Query 007511
Match_columns 601
No_of_seqs 550 out of 3277
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:34:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ec1_A YQEH GTPase; atnos1, at 100.0 4.7E-53 1.6E-57 451.0 10.2 365 82-534 5-369 (369)
2 3h2y_A GTPase family protein; 100.0 6.4E-52 2.2E-56 442.0 10.1 364 82-534 5-368 (368)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 7.3E-24 2.5E-28 223.6 13.9 177 281-458 5-228 (359)
4 3rlf_A Maltose/maltodextrin im 99.9 2.4E-24 8.2E-29 228.8 8.0 171 281-452 4-214 (381)
5 2yyz_A Sugar ABC transporter, 99.9 3E-23 1E-27 219.3 12.3 171 281-452 4-214 (359)
6 3tui_C Methionine import ATP-b 99.9 6.3E-24 2.2E-28 224.3 6.2 170 281-451 25-243 (366)
7 2it1_A 362AA long hypothetical 99.9 4.2E-23 1.5E-27 218.4 11.4 171 281-452 4-214 (362)
8 1z47_A CYSA, putative ABC-tran 99.9 1.5E-23 5.3E-28 221.1 7.7 173 279-452 13-226 (355)
9 1v43_A Sugar-binding transport 99.9 5.2E-23 1.8E-27 218.5 10.3 171 281-452 12-222 (372)
10 1oxx_K GLCV, glucose, ABC tran 99.9 9.2E-23 3.1E-27 215.5 11.2 171 281-452 4-221 (353)
11 3gfo_A Cobalt import ATP-bindi 99.9 2.6E-23 8.9E-28 212.6 6.7 169 281-451 8-223 (275)
12 1g29_1 MALK, maltose transport 99.9 8.4E-23 2.9E-27 217.1 10.3 171 281-452 4-220 (372)
13 3d31_A Sulfate/molybdate ABC t 99.9 5.1E-23 1.7E-27 216.8 8.5 170 281-452 2-208 (348)
14 4g1u_C Hemin import ATP-bindin 99.9 6.1E-23 2.1E-27 209.0 8.0 170 281-451 12-227 (266)
15 3tif_A Uncharacterized ABC tra 99.9 3.8E-23 1.3E-27 206.8 5.4 170 282-452 3-225 (235)
16 2pcj_A ABC transporter, lipopr 99.9 8E-23 2.7E-27 203.0 7.2 169 281-451 5-218 (224)
17 1g6h_A High-affinity branched- 99.9 9.6E-23 3.3E-27 206.5 7.1 169 281-451 8-232 (257)
18 2olj_A Amino acid ABC transpor 99.9 8.3E-23 2.8E-27 207.6 6.3 169 281-451 25-238 (263)
19 1vpl_A ABC transporter, ATP-bi 99.9 8.1E-23 2.8E-27 206.9 5.3 171 279-451 14-225 (256)
20 2nq2_C Hypothetical ABC transp 99.9 2.3E-22 7.7E-27 203.3 7.6 167 281-449 5-206 (253)
21 1b0u_A Histidine permease; ABC 99.9 1.2E-22 4.1E-27 206.4 5.5 169 281-451 7-232 (262)
22 1ji0_A ABC transporter; ATP bi 99.9 2.5E-22 8.6E-27 201.4 6.7 169 281-451 7-218 (240)
23 2onk_A Molybdate/tungstate ABC 99.9 2.8E-22 9.5E-27 201.1 6.2 166 282-451 3-206 (240)
24 2yz2_A Putative ABC transporte 99.8 1.4E-21 4.8E-26 199.0 7.4 169 281-451 3-217 (266)
25 2ihy_A ABC transporter, ATP-bi 99.8 1.4E-21 4.9E-26 200.1 7.1 169 281-451 22-242 (279)
26 2ixe_A Antigen peptide transpo 99.8 4.2E-21 1.4E-25 195.9 8.5 171 280-451 16-235 (271)
27 2ff7_A Alpha-hemolysin translo 99.8 1.6E-20 5.5E-25 189.1 10.5 170 279-451 6-222 (247)
28 1sgw_A Putative ABC transporte 99.8 3.6E-21 1.2E-25 189.6 5.6 155 279-436 9-190 (214)
29 1mv5_A LMRA, multidrug resista 99.8 1.1E-20 3.6E-25 189.9 8.5 168 281-451 2-216 (243)
30 3gd7_A Fusion complex of cysti 99.8 1.3E-20 4.3E-25 201.4 9.3 171 279-453 18-234 (390)
31 2qi9_C Vitamin B12 import ATP- 99.8 6.2E-21 2.1E-25 192.3 6.0 163 282-451 6-212 (249)
32 2d2e_A SUFC protein; ABC-ATPas 99.8 2.3E-21 7.8E-26 195.6 2.6 169 281-451 4-223 (250)
33 3nh6_A ATP-binding cassette SU 99.8 2.3E-20 7.7E-25 193.4 9.1 169 280-451 53-267 (306)
34 2zu0_C Probable ATP-dependent 99.8 2E-20 6.9E-25 190.5 6.2 169 281-451 21-244 (267)
35 2cbz_A Multidrug resistance-as 99.8 3.1E-20 1.1E-24 185.8 4.1 168 281-451 4-207 (237)
36 2pjz_A Hypothetical protein ST 99.8 4.4E-20 1.5E-24 187.5 4.2 163 282-451 3-205 (263)
37 2pze_A Cystic fibrosis transme 99.8 1.1E-19 3.9E-24 180.8 5.8 168 280-451 6-208 (229)
38 2ghi_A Transport protein; mult 99.8 3E-19 1E-23 181.1 8.9 168 280-451 17-232 (260)
39 3b5x_A Lipid A export ATP-bind 99.7 2E-18 7E-23 194.2 11.2 169 280-451 341-557 (582)
40 3qf4_A ABC transporter, ATP-bi 99.7 1.8E-18 6E-23 194.9 9.3 169 280-451 341-556 (587)
41 3b60_A Lipid A export ATP-bind 99.7 2.9E-18 9.9E-23 193.0 9.3 169 280-451 341-557 (582)
42 3qf4_B Uncharacterized ABC tra 99.7 3.3E-18 1.1E-22 193.1 9.1 169 280-451 354-568 (598)
43 4a82_A Cystic fibrosis transme 99.7 3.6E-18 1.2E-22 192.0 8.6 169 280-451 339-554 (578)
44 2yl4_A ATP-binding cassette SU 99.7 3.6E-18 1.2E-22 192.7 8.4 168 281-451 342-560 (595)
45 3ozx_A RNAse L inhibitor; ATP 99.7 5.1E-18 1.8E-22 188.7 8.4 164 283-448 272-462 (538)
46 3bk7_A ABC transporter ATP-bin 99.7 1.1E-17 3.8E-22 188.4 7.0 163 282-447 359-547 (607)
47 2bbs_A Cystic fibrosis transme 99.7 4.3E-18 1.5E-22 175.2 2.9 154 293-451 51-237 (290)
48 1yqt_A RNAse L inhibitor; ATP- 99.7 1.7E-17 5.9E-22 184.7 7.7 162 283-447 290-477 (538)
49 2rcn_A Probable GTPase ENGC; Y 99.7 3.2E-17 1.1E-21 172.9 8.2 183 192-402 126-328 (358)
50 3bk7_A ABC transporter ATP-bin 99.7 6.7E-17 2.3E-21 182.1 8.2 161 285-448 96-304 (607)
51 1yqt_A RNAse L inhibitor; ATP- 99.7 6E-17 2.1E-21 180.4 7.5 161 285-448 26-234 (538)
52 3j16_B RLI1P; ribosome recycli 99.6 1E-16 3.5E-21 180.4 6.3 152 294-447 361-543 (608)
53 4f4c_A Multidrug resistance pr 99.6 1.8E-16 6.3E-21 193.2 8.9 177 279-458 1075-1304(1321)
54 3g5u_A MCG1178, multidrug resi 99.6 4.2E-16 1.5E-20 189.5 9.7 169 280-451 387-603 (1284)
55 4f4c_A Multidrug resistance pr 99.6 3.6E-16 1.2E-20 190.6 8.5 169 280-451 415-631 (1321)
56 2yv5_A YJEQ protein; hydrolase 99.6 4.1E-16 1.4E-20 161.5 7.5 184 193-401 76-301 (302)
57 1puj_A YLQF, conserved hypothe 99.6 7.6E-16 2.6E-20 157.9 9.3 160 177-381 6-178 (282)
58 3g5u_A MCG1178, multidrug resi 99.6 1.2E-15 4E-20 185.6 11.5 170 280-452 1030-1249(1284)
59 2iw3_A Elongation factor 3A; a 99.6 1.8E-15 6.1E-20 176.8 7.9 164 280-451 435-624 (986)
60 2iw3_A Elongation factor 3A; a 99.6 4.6E-16 1.6E-20 181.8 2.1 172 281-457 672-983 (986)
61 3ozx_A RNAse L inhibitor; ATP 99.5 1.4E-15 4.8E-20 169.1 4.5 160 286-449 5-214 (538)
62 1t9h_A YLOQ, probable GTPase E 99.5 3.6E-15 1.2E-19 154.3 6.8 136 173-338 69-205 (307)
63 3j16_B RLI1P; ribosome recycli 99.5 4.4E-15 1.5E-19 167.1 6.6 170 277-449 66-298 (608)
64 3cnl_A YLQF, putative uncharac 99.5 3.5E-15 1.2E-19 151.4 4.7 145 188-381 13-157 (262)
65 3ux8_A Excinuclease ABC, A sub 99.5 1.7E-14 5.9E-19 164.9 7.7 156 293-450 31-287 (670)
66 1u0l_A Probable GTPase ENGC; p 99.5 1.9E-14 6.4E-19 148.8 7.3 121 193-338 81-201 (301)
67 1mky_A Probable GTP-binding pr 99.4 3.8E-13 1.3E-17 146.2 8.1 160 182-380 67-240 (439)
68 2hjg_A GTP-binding protein ENG 99.3 1.7E-12 5.7E-17 141.0 9.0 158 182-380 68-235 (436)
69 3ux8_A Excinuclease ABC, A sub 99.3 4E-13 1.4E-17 153.5 3.6 80 371-451 525-630 (670)
70 2npi_A Protein CLP1; CLP1-PCF1 99.3 3.7E-13 1.3E-17 146.8 1.1 147 298-451 130-329 (460)
71 3b85_A Phosphate starvation-in 99.3 2.7E-13 9.4E-18 132.7 0.1 122 289-437 9-156 (208)
72 4dcu_A GTP-binding protein ENG 99.2 1.6E-11 5.5E-16 134.0 10.1 158 182-380 88-255 (456)
73 3sop_A Neuronal-specific septi 99.1 3.5E-12 1.2E-16 129.8 -0.9 103 308-411 4-121 (270)
74 2v9p_A Replication protein E1; 99.1 1.6E-12 5.4E-17 134.3 -3.6 133 293-451 113-256 (305)
75 3b9q_A Chloroplast SRP recepto 99.1 6.9E-12 2.4E-16 129.6 -0.2 134 301-437 94-255 (302)
76 3pih_A Uvrabc system protein A 99.1 1.1E-10 3.9E-15 136.2 9.9 80 371-451 787-892 (916)
77 2vf7_A UVRA2, excinuclease ABC 99.1 3.1E-11 1.1E-15 139.8 4.8 81 370-451 711-817 (842)
78 1tq4_A IIGP1, interferon-induc 99.1 3.2E-11 1.1E-15 129.6 4.5 117 308-425 71-213 (413)
79 2r6f_A Excinuclease ABC subuni 99.1 1.5E-10 5.1E-15 134.7 8.0 81 370-451 826-932 (972)
80 2ygr_A Uvrabc system protein A 99.0 1.8E-10 6.2E-15 134.4 7.2 80 371-451 845-950 (993)
81 1ye8_A Protein THEP1, hypothet 99.0 2.2E-10 7.4E-15 109.2 6.2 92 308-411 2-107 (178)
82 2og2_A Putative signal recogni 99.0 2.5E-11 8.4E-16 128.2 -0.8 134 301-437 151-312 (359)
83 3qf7_A RAD50; ABC-ATPase, ATPa 99.0 4.9E-10 1.7E-14 118.8 7.8 69 382-451 274-363 (365)
84 4gp7_A Metallophosphoesterase; 99.0 1.1E-10 3.8E-15 110.1 2.0 124 301-436 3-156 (171)
85 4aby_A DNA repair protein RECN 99.0 9.4E-11 3.2E-15 125.8 1.0 61 388-450 296-377 (415)
86 3aez_A Pantothenate kinase; tr 98.9 6E-11 2E-15 123.1 -1.0 105 304-413 87-204 (312)
87 1rj9_A FTSY, signal recognitio 98.9 7.4E-11 2.5E-15 122.0 -1.1 129 307-438 102-257 (304)
88 1tf7_A KAIC; homohexamer, hexa 98.8 1.4E-10 4.9E-15 128.7 -3.3 155 291-449 23-211 (525)
89 1z6g_A Guanylate kinase; struc 98.8 9.3E-10 3.2E-14 108.1 2.1 144 294-447 11-193 (218)
90 2pt7_A CAG-ALFA; ATPase, prote 98.7 6.1E-09 2.1E-13 108.8 4.6 98 293-425 158-262 (330)
91 1znw_A Guanylate kinase, GMP k 98.7 1.7E-10 5.9E-15 112.1 -7.2 50 303-352 16-74 (207)
92 1tf7_A KAIC; homohexamer, hexa 98.7 1.2E-08 4E-13 113.3 6.4 121 303-435 277-413 (525)
93 2jeo_A Uridine-cytidine kinase 98.6 5.7E-09 1.9E-13 104.1 -0.2 116 290-411 9-141 (245)
94 2yhs_A FTSY, cell division pro 98.5 1.2E-08 4.1E-13 111.3 -0.1 133 301-437 287-447 (503)
95 1e69_A Chromosome segregation 98.5 1.5E-07 5.2E-12 97.7 7.5 68 381-450 213-301 (322)
96 2dpy_A FLII, flagellum-specifi 98.5 2E-09 6.8E-14 116.7 -7.3 131 285-426 136-296 (438)
97 3e70_C DPA, signal recognition 98.4 1.3E-08 4.4E-13 106.2 -2.0 126 305-437 127-277 (328)
98 2qnr_A Septin-2, protein NEDD5 98.4 1.4E-08 4.8E-13 104.7 -1.9 103 285-409 3-133 (301)
99 2e87_A Hypothetical protein PH 98.4 1.4E-08 4.9E-13 107.0 -2.5 84 308-410 169-255 (357)
100 3thx_B DNA mismatch repair pro 98.4 1.2E-07 4.3E-12 110.8 4.9 122 292-435 659-792 (918)
101 2i3b_A HCR-ntpase, human cance 98.3 6.9E-07 2.3E-11 85.8 7.4 108 308-427 3-134 (189)
102 3thx_A DNA mismatch repair pro 98.3 2.1E-07 7.1E-12 109.3 4.0 120 294-437 650-783 (934)
103 1cr0_A DNA primase/helicase; R 98.3 6.5E-07 2.2E-11 91.4 7.1 41 294-335 23-64 (296)
104 2obl_A ESCN; ATPase, hydrolase 98.3 1.5E-08 5E-13 106.6 -5.5 159 287-451 52-245 (347)
105 2o8b_B DNA mismatch repair pro 98.2 4.9E-07 1.7E-11 107.3 4.9 127 286-436 761-909 (1022)
106 3qkt_A DNA double-strand break 98.2 2E-06 6.7E-11 90.0 8.6 64 382-446 243-327 (339)
107 2qag_C Septin-7; cell cycle, c 98.2 4E-07 1.4E-11 97.9 2.9 142 281-441 12-179 (418)
108 2eyu_A Twitching motility prot 98.2 1.2E-06 4E-11 88.5 5.9 41 294-337 15-57 (261)
109 3asz_A Uridine kinase; cytidin 98.2 1.4E-07 4.8E-12 91.2 -0.9 94 306-409 5-117 (211)
110 1htw_A HI0065; nucleotide-bind 98.2 3.7E-07 1.3E-11 85.1 1.6 48 288-337 15-63 (158)
111 1nlf_A Regulatory protein REPA 98.1 2.3E-06 7.7E-11 86.7 6.8 129 305-438 28-180 (279)
112 1udx_A The GTP-binding protein 98.1 2.2E-06 7.7E-11 92.0 5.9 129 301-432 151-301 (416)
113 1pui_A ENGB, probable GTP-bind 98.1 3.2E-06 1.1E-10 81.0 6.3 48 285-336 8-61 (210)
114 2f1r_A Molybdopterin-guanine d 98.1 8.6E-08 3E-12 90.6 -5.3 26 308-333 4-29 (171)
115 1zp6_A Hypothetical protein AT 98.0 5.6E-08 1.9E-12 92.3 -7.1 112 305-419 7-142 (191)
116 1ewq_A DNA mismatch repair pro 98.0 5.4E-06 1.9E-10 95.5 6.7 104 281-412 551-664 (765)
117 4a74_A DNA repair and recombin 98.0 3.1E-06 1.1E-10 82.2 3.8 29 304-332 22-51 (231)
118 3szr_A Interferon-induced GTP- 97.9 3.2E-06 1.1E-10 95.3 3.7 30 308-337 47-77 (608)
119 2w0m_A SSO2452; RECA, SSPF, un 97.9 8.5E-06 2.9E-10 79.0 6.3 32 304-335 20-52 (235)
120 2ehv_A Hypothetical protein PH 97.9 1.2E-05 4E-10 79.1 6.8 32 304-335 27-61 (251)
121 2qag_B Septin-6, protein NEDD5 97.9 5.4E-06 1.9E-10 89.0 4.6 75 287-363 22-106 (427)
122 3jvv_A Twitching mobility prot 97.9 5.5E-06 1.9E-10 87.3 4.0 31 305-335 122-152 (356)
123 1x3s_A RAS-related protein RAB 97.9 5.6E-06 1.9E-10 77.8 3.6 110 194-321 85-194 (195)
124 2x8a_A Nuclear valosin-contain 97.9 1.1E-07 3.8E-12 96.6 -9.4 110 293-407 33-159 (274)
125 1wb9_A DNA mismatch repair pro 97.8 1.4E-05 4.8E-10 92.5 6.6 121 292-435 594-726 (800)
126 3t34_A Dynamin-related protein 97.8 5E-05 1.7E-09 79.8 10.1 39 294-335 25-65 (360)
127 3i8s_A Ferrous iron transport 97.8 5.3E-05 1.8E-09 76.6 9.5 114 308-440 5-123 (274)
128 1nij_A Hypothetical protein YJ 97.8 2.2E-06 7.5E-11 88.9 -0.9 119 309-433 7-183 (318)
129 2gza_A Type IV secretion syste 97.8 3.3E-06 1.1E-10 89.1 -0.0 40 296-336 165-205 (361)
130 1in4_A RUVB, holliday junction 97.8 3.7E-06 1.3E-10 87.6 0.3 131 289-427 27-195 (334)
131 3b1v_A Ferrous iron uptake tra 97.7 0.00012 4E-09 74.1 10.4 110 308-439 5-117 (272)
132 3lxx_A GTPase IMAP family memb 97.7 5.4E-05 1.8E-09 74.5 7.7 25 308-332 31-55 (239)
133 1ega_A Protein (GTP-binding pr 97.7 6.3E-05 2.2E-09 77.2 8.3 24 306-329 8-31 (301)
134 3iby_A Ferrous iron transport 97.7 7.2E-05 2.5E-09 74.9 8.2 115 308-440 3-121 (256)
135 1s96_A Guanylate kinase, GMP k 97.6 1.5E-05 5.2E-10 78.1 2.6 29 304-332 13-42 (219)
136 2wji_A Ferrous iron transport 97.6 0.00011 3.9E-09 67.5 7.8 23 308-330 5-27 (165)
137 3pih_A Uvrabc system protein A 97.6 2.9E-05 9.8E-10 90.9 3.4 80 370-450 445-549 (916)
138 4a9a_A Ribosome-interacting GT 97.5 5.9E-05 2E-09 79.8 5.4 57 308-380 74-131 (376)
139 3iev_A GTP-binding protein ERA 97.5 8.5E-05 2.9E-09 76.4 6.2 103 180-302 76-179 (308)
140 2qm8_A GTPase/ATPase; G protei 97.5 1.6E-05 5.3E-10 83.2 0.5 50 287-337 36-86 (337)
141 3k53_A Ferrous iron transport 97.5 0.00031 1.1E-08 70.5 10.2 57 308-380 5-62 (271)
142 3euj_A Chromosome partition pr 97.5 3.8E-05 1.3E-09 83.8 3.4 42 294-337 18-60 (483)
143 3a1s_A Iron(II) transport prot 97.5 0.00018 6.2E-09 72.0 8.1 57 308-380 7-64 (258)
144 2r6f_A Excinuclease ABC subuni 97.5 8.2E-05 2.8E-09 86.9 6.0 79 371-450 486-589 (972)
145 3lxw_A GTPase IMAP family memb 97.5 0.00015 5E-09 72.1 6.8 23 308-330 23-45 (247)
146 1odf_A YGR205W, hypothetical 3 97.5 6.6E-06 2.3E-10 84.2 -3.2 98 308-409 33-158 (290)
147 2gj8_A MNME, tRNA modification 97.5 5.4E-05 1.8E-09 70.5 3.3 58 308-380 6-64 (172)
148 2wjg_A FEOB, ferrous iron tran 97.4 0.00036 1.2E-08 65.0 9.0 57 308-380 9-66 (188)
149 2ygr_A Uvrabc system protein A 97.4 0.00011 3.8E-09 86.0 5.4 79 371-450 503-606 (993)
150 1f2t_B RAD50 ABC-ATPase; DNA d 97.4 6.1E-05 2.1E-09 69.2 2.4 65 381-446 51-136 (148)
151 3lnc_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 73.1 3.2 36 295-331 16-53 (231)
152 1wf3_A GTP-binding protein; GT 97.4 7.2E-05 2.5E-09 76.8 3.2 60 307-381 8-68 (301)
153 1wf3_A GTP-binding protein; GT 97.3 0.00021 7E-09 73.4 6.3 100 180-301 70-169 (301)
154 3iev_A GTP-binding protein ERA 97.3 8.7E-05 3E-09 76.3 3.0 62 305-381 9-72 (308)
155 1pzn_A RAD51, DNA repair and r 97.3 7.6E-05 2.6E-09 78.3 2.5 39 297-335 121-162 (349)
156 2vf7_A UVRA2, excinuclease ABC 97.3 0.00011 3.9E-09 85.1 4.1 80 370-450 360-464 (842)
157 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4E-09 69.8 3.3 27 304-330 4-31 (205)
158 3a00_A Guanylate kinase, GMP k 97.3 0.00013 4.3E-09 69.1 3.5 24 309-332 4-27 (186)
159 3pqc_A Probable GTP-binding pr 97.3 0.00032 1.1E-08 65.5 6.2 89 194-301 102-190 (195)
160 1lvg_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 70.1 3.3 24 308-331 6-29 (198)
161 4dhe_A Probable GTP-binding pr 97.3 0.00024 8.3E-09 68.3 5.4 93 194-302 113-208 (223)
162 3t5g_A GTP-binding protein RHE 97.2 0.00019 6.4E-09 66.6 4.2 105 194-321 75-180 (181)
163 1svi_A GTP-binding protein YSX 97.1 0.00094 3.2E-08 62.5 7.5 86 196-300 105-190 (195)
164 3kta_A Chromosome segregation 97.1 0.00023 7.9E-09 66.6 3.2 35 301-335 21-55 (182)
165 1p9r_A General secretion pathw 97.1 9.4E-05 3.2E-09 79.5 0.5 42 294-337 157-198 (418)
166 3c8u_A Fructokinase; YP_612366 97.1 0.00015 5.2E-09 69.8 1.8 29 305-333 20-49 (208)
167 2oap_1 GSPE-2, type II secreti 97.0 0.0002 6.9E-09 78.9 2.5 40 295-335 249-289 (511)
168 2cvh_A DNA repair and recombin 97.0 0.00073 2.5E-08 64.8 6.0 25 304-328 17-42 (220)
169 1sq5_A Pantothenate kinase; P- 97.0 0.00022 7.6E-09 73.3 2.5 33 305-337 78-113 (308)
170 2cxx_A Probable GTP-binding pr 97.0 0.0003 1E-08 65.5 3.0 54 308-380 3-56 (190)
171 4dcu_A GTP-binding protein ENG 97.0 0.00065 2.2E-08 73.7 6.0 91 193-301 274-365 (456)
172 1svi_A GTP-binding protein YSX 97.0 0.00032 1.1E-08 65.8 2.9 57 308-380 25-81 (195)
173 1mky_A Probable GTP-binding pr 97.0 0.00066 2.3E-08 73.2 5.8 133 193-352 260-392 (439)
174 3t5d_A Septin-7; GTP-binding p 96.9 0.00031 1.1E-08 70.7 3.0 23 308-330 10-32 (274)
175 1lw7_A Transcriptional regulat 96.9 0.00029 9.8E-09 74.1 2.6 34 301-334 162-198 (365)
176 2ewv_A Twitching motility prot 96.9 0.00028 9.5E-09 74.6 2.4 33 304-336 133-167 (372)
177 3pqc_A Probable GTP-binding pr 96.9 0.00044 1.5E-08 64.5 3.5 56 308-380 25-80 (195)
178 1h65_A Chloroplast outer envel 96.9 0.00036 1.2E-08 70.1 3.0 58 308-380 41-99 (270)
179 1kgd_A CASK, peripheral plasma 96.9 0.00043 1.5E-08 65.1 3.3 24 308-331 7-30 (180)
180 3def_A T7I23.11 protein; chlor 96.9 0.00038 1.3E-08 69.6 3.0 58 308-380 38-96 (262)
181 2qu8_A Putative nucleolar GTP- 96.9 0.0023 7.7E-08 62.1 8.5 95 194-300 106-200 (228)
182 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00038 1.3E-08 74.0 3.1 22 308-329 24-45 (396)
183 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00029 1E-08 74.9 2.1 23 308-330 22-44 (392)
184 3tkl_A RAS-related protein RAB 96.9 0.0015 5E-08 61.1 6.6 108 194-321 86-194 (196)
185 4dhe_A Probable GTP-binding pr 96.9 0.00029 9.8E-09 67.8 1.7 59 308-380 31-91 (223)
186 2dyk_A GTP-binding protein; GT 96.9 0.00041 1.4E-08 62.6 2.6 86 188-299 71-156 (161)
187 2j41_A Guanylate kinase; GMP, 96.8 0.00045 1.6E-08 65.6 3.0 30 304-333 3-33 (207)
188 2dyk_A GTP-binding protein; GT 96.8 0.00039 1.3E-08 62.7 2.3 58 308-380 3-61 (161)
189 3t1o_A Gliding protein MGLA; G 96.8 0.00076 2.6E-08 62.9 4.2 90 193-300 94-187 (198)
190 2qtf_A Protein HFLX, GTP-bindi 96.8 0.00043 1.5E-08 73.0 2.4 22 309-330 182-203 (364)
191 3gee_A MNME, tRNA modification 96.8 0.00029 1E-08 76.9 1.1 58 308-380 235-293 (476)
192 1jal_A YCHF protein; nucleotid 96.8 0.00043 1.5E-08 72.8 2.3 22 308-329 4-25 (363)
193 3j2k_7 ERF3, eukaryotic polype 96.8 0.0038 1.3E-07 67.3 9.7 94 192-299 114-219 (439)
194 1vma_A Cell division protein F 96.7 0.00074 2.5E-08 69.4 3.8 87 305-411 102-194 (306)
195 2hjg_A GTP-binding protein ENG 96.7 0.0015 5.1E-08 70.4 6.2 91 193-301 254-345 (436)
196 1qhl_A Protein (cell division 96.7 0.00025 8.4E-09 69.9 -0.0 30 308-337 29-58 (227)
197 1ega_A Protein (GTP-binding pr 96.7 0.00088 3E-08 68.6 4.1 90 190-301 82-171 (301)
198 2xtp_A GTPase IMAP family memb 96.7 0.00061 2.1E-08 67.7 2.8 23 308-330 24-46 (260)
199 1ek0_A Protein (GTP-binding pr 96.7 0.0021 7.1E-08 58.2 6.1 94 193-301 72-165 (170)
200 1xzp_A Probable tRNA modificat 96.7 0.00025 8.6E-09 77.5 -0.1 57 308-379 245-302 (482)
201 2bbw_A Adenylate kinase 4, AK4 96.7 0.00043 1.5E-08 68.4 1.5 30 308-337 29-61 (246)
202 3q72_A GTP-binding protein RAD 96.7 0.00071 2.4E-08 61.4 2.7 23 308-330 4-26 (166)
203 3ec2_A DNA replication protein 96.7 0.00041 1.4E-08 64.8 1.1 28 308-335 40-67 (180)
204 3clv_A RAB5 protein, putative; 96.6 0.0035 1.2E-07 58.4 7.4 23 308-330 9-31 (208)
205 1vg8_A RAS-related protein RAB 96.6 0.0015 5.1E-08 61.7 4.7 94 194-301 78-171 (207)
206 3cb4_D GTP-binding protein LEP 96.6 0.0017 5.7E-08 72.8 5.8 119 193-332 91-219 (599)
207 2qu8_A Putative nucleolar GTP- 96.6 0.00089 3E-08 65.0 3.1 57 308-380 31-88 (228)
208 3reg_A RHO-like small GTPase; 96.6 0.0014 4.9E-08 61.5 4.4 93 192-302 90-185 (194)
209 3sjy_A Translation initiation 96.6 0.0013 4.6E-08 70.0 4.7 90 193-301 95-188 (403)
210 3nwj_A ATSK2; P loop, shikimat 96.6 0.00061 2.1E-08 68.0 1.7 46 284-330 21-72 (250)
211 1oix_A RAS-related protein RAB 96.6 0.00087 3E-08 63.2 2.7 24 308-331 31-54 (191)
212 4dsu_A GTPase KRAS, isoform 2B 96.6 0.0013 4.6E-08 60.8 4.0 22 308-329 6-27 (189)
213 3tw8_B RAS-related protein RAB 96.6 0.001 3.5E-08 61.0 3.1 22 308-329 11-32 (181)
214 3uie_A Adenylyl-sulfate kinase 96.6 0.00077 2.6E-08 64.3 2.3 37 294-331 13-50 (200)
215 3geh_A MNME, tRNA modification 96.6 0.00036 1.2E-08 75.9 -0.1 58 308-380 226-284 (462)
216 2lkc_A Translation initiation 96.5 0.0011 3.6E-08 61.0 3.0 23 307-329 9-31 (178)
217 2atx_A Small GTP binding prote 96.5 0.0017 5.8E-08 60.8 4.4 90 192-300 85-188 (194)
218 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0027 9.4E-08 58.1 5.7 97 191-301 74-170 (177)
219 4ad8_A DNA repair protein RECN 96.5 0.0016 5.6E-08 71.6 4.9 66 381-448 390-473 (517)
220 3tau_A Guanylate kinase, GMP k 96.5 0.0013 4.4E-08 63.3 3.5 27 306-332 7-34 (208)
221 1z2a_A RAS-related protein RAB 96.5 0.0013 4.3E-08 59.6 3.2 22 308-329 7-28 (168)
222 2f9l_A RAB11B, member RAS onco 96.5 0.001 3.6E-08 62.9 2.8 23 308-330 7-29 (199)
223 4bas_A ADP-ribosylation factor 96.5 0.0021 7.1E-08 60.2 4.8 101 192-301 82-185 (199)
224 3kta_B Chromosome segregation 96.5 0.00091 3.1E-08 63.0 2.1 63 382-446 59-140 (173)
225 3ney_A 55 kDa erythrocyte memb 96.5 0.0018 6.1E-08 62.3 4.1 26 306-331 18-44 (197)
226 2g6b_A RAS-related protein RAB 96.4 0.0017 5.7E-08 59.8 3.8 23 308-330 12-34 (180)
227 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0013 4.6E-08 60.2 3.0 22 308-329 9-30 (177)
228 1upt_A ARL1, ADP-ribosylation 96.4 0.00081 2.8E-08 61.2 1.5 95 192-300 70-164 (171)
229 1u8z_A RAS-related protein RAL 96.4 0.0019 6.6E-08 58.2 4.0 22 308-329 6-27 (168)
230 1s0u_A EIF-2-gamma, translatio 96.4 0.0064 2.2E-07 64.8 8.5 95 192-301 100-194 (408)
231 2y8e_A RAB-protein 6, GH09086P 96.4 0.0014 4.9E-08 59.9 3.0 22 308-329 16-37 (179)
232 1wxq_A GTP-binding protein; st 96.4 0.00093 3.2E-08 71.2 1.8 23 308-330 2-24 (397)
233 1f6b_A SAR1; gtpases, N-termin 96.4 0.00094 3.2E-08 63.4 1.6 35 293-328 13-47 (198)
234 3q3j_B RHO-related GTP-binding 96.4 0.0021 7.2E-08 61.8 4.1 92 192-301 94-199 (214)
235 1g16_A RAS-related protein SEC 96.4 0.0014 4.6E-08 59.5 2.6 22 308-329 5-26 (170)
236 2fn4_A P23, RAS-related protei 96.4 0.0019 6.6E-08 59.2 3.6 22 308-329 11-32 (181)
237 3tkl_A RAS-related protein RAB 96.3 0.0018 6E-08 60.6 3.4 22 308-329 18-39 (196)
238 1z08_A RAS-related protein RAB 96.3 0.0021 7.3E-08 58.3 3.8 22 308-329 8-29 (170)
239 3p26_A Elongation factor 1 alp 96.3 0.0041 1.4E-07 67.9 6.6 96 192-298 130-231 (483)
240 2bov_A RAla, RAS-related prote 96.3 0.0022 7.6E-08 60.4 4.0 22 308-329 16-37 (206)
241 3k1j_A LON protease, ATP-depen 96.3 0.0025 8.4E-08 71.6 4.9 44 290-334 44-88 (604)
242 2yc2_C IFT27, small RAB-relate 96.3 0.0053 1.8E-07 57.7 6.6 96 190-301 90-188 (208)
243 1ixz_A ATP-dependent metallopr 96.3 0.001 3.5E-08 65.8 1.5 35 294-330 39-73 (254)
244 2lkc_A Translation initiation 96.3 0.0021 7E-08 59.0 3.5 86 194-300 76-166 (178)
245 1zun_B Sulfate adenylate trans 96.3 0.0071 2.4E-07 65.0 8.3 91 193-299 124-218 (434)
246 2bdt_A BH3686; alpha-beta prot 96.3 0.0016 5.4E-08 61.2 2.8 20 309-328 5-24 (189)
247 2ce2_X GTPase HRAS; signaling 96.3 0.0061 2.1E-07 54.5 6.6 88 195-300 73-160 (166)
248 2www_A Methylmalonic aciduria 96.3 0.0018 6.1E-08 67.7 3.4 28 308-335 76-103 (349)
249 2efe_B Small GTP-binding prote 96.3 0.0034 1.2E-07 57.6 4.9 89 194-301 82-171 (181)
250 3con_A GTPase NRAS; structural 96.3 0.0054 1.8E-07 57.0 6.3 91 192-300 88-178 (190)
251 2kjq_A DNAA-related protein; s 96.3 0.0013 4.4E-08 60.1 1.9 25 308-332 38-62 (149)
252 4eun_A Thermoresistant glucoki 96.3 0.0017 5.7E-08 61.9 2.8 25 306-330 28-53 (200)
253 2hup_A RAS-related protein RAB 96.3 0.0033 1.1E-07 59.7 4.8 92 192-301 97-189 (201)
254 1jny_A EF-1-alpha, elongation 96.3 0.022 7.4E-07 61.2 11.9 113 192-332 103-225 (435)
255 1rz3_A Hypothetical protein rb 96.3 0.0012 4.2E-08 63.1 1.8 31 305-335 20-51 (201)
256 1zj6_A ADP-ribosylation factor 96.3 0.0036 1.2E-07 58.2 5.1 94 194-301 81-174 (187)
257 1g16_A RAS-related protein SEC 96.3 0.007 2.4E-07 54.7 6.8 89 194-301 73-161 (170)
258 3tw8_B RAS-related protein RAB 96.3 0.0038 1.3E-07 57.2 5.0 89 193-301 78-167 (181)
259 2a9k_A RAS-related protein RAL 96.3 0.0026 9E-08 58.6 3.9 22 308-329 20-41 (187)
260 3clv_A RAB5 protein, putative; 96.2 0.0039 1.3E-07 58.0 5.2 86 194-300 114-199 (208)
261 1zd9_A ADP-ribosylation factor 96.2 0.0019 6.3E-08 60.5 2.9 95 193-301 87-181 (188)
262 3cph_A RAS-related protein SEC 96.2 0.0022 7.4E-08 60.9 3.3 22 308-329 22-43 (213)
263 3cph_A RAS-related protein SEC 96.2 0.0097 3.3E-07 56.3 8.0 89 194-301 90-178 (213)
264 2qag_A Septin-2, protein NEDD5 96.2 0.0017 5.8E-08 68.3 2.8 25 308-332 39-63 (361)
265 2h17_A ADP-ribosylation factor 96.2 0.016 5.6E-07 53.4 9.3 22 308-329 23-44 (181)
266 1vg8_A RAS-related protein RAB 96.2 0.0024 8.2E-08 60.3 3.6 23 308-330 10-32 (207)
267 3kkq_A RAS-related protein M-R 96.2 0.0038 1.3E-07 57.6 4.8 88 195-300 88-177 (183)
268 3con_A GTPase NRAS; structural 96.2 0.0029 9.9E-08 58.9 4.0 22 308-329 23-44 (190)
269 2fu5_C RAS-related protein RAB 96.2 0.015 5.2E-07 53.4 8.9 90 192-300 76-166 (183)
270 1wb1_A Translation elongation 96.2 0.0035 1.2E-07 68.4 5.2 94 191-301 91-185 (482)
271 3lda_A DNA repair protein RAD5 96.2 0.011 3.6E-07 63.1 8.7 32 304-335 175-209 (400)
272 1xzp_A Probable tRNA modificat 96.2 0.0027 9.1E-08 69.4 4.2 81 193-300 320-400 (482)
273 2g6b_A RAS-related protein RAB 96.2 0.0084 2.9E-07 54.9 7.0 91 192-301 79-170 (180)
274 1kag_A SKI, shikimate kinase I 96.2 0.0021 7.3E-08 59.2 2.9 23 308-330 6-28 (173)
275 1iy2_A ATP-dependent metallopr 96.2 0.0013 4.5E-08 66.1 1.5 35 294-330 63-97 (278)
276 2h57_A ADP-ribosylation factor 96.2 0.0017 5.9E-08 60.7 2.1 96 193-300 87-182 (190)
277 1m2o_B GTP-binding protein SAR 96.2 0.002 6.7E-08 60.6 2.6 33 296-329 14-46 (190)
278 4e22_A Cytidylate kinase; P-lo 96.2 0.0012 4.1E-08 65.6 1.1 29 308-336 29-60 (252)
279 1zbd_A Rabphilin-3A; G protein 96.1 0.017 5.9E-07 54.2 9.2 91 191-300 75-166 (203)
280 2bme_A RAB4A, RAS-related prot 96.1 0.0022 7.5E-08 59.3 2.8 23 308-330 12-34 (186)
281 2f7s_A C25KG, RAS-related prot 96.1 0.0067 2.3E-07 57.8 6.3 92 191-300 102-194 (217)
282 1z2a_A RAS-related protein RAB 96.1 0.0047 1.6E-07 55.8 4.9 87 194-300 75-162 (168)
283 2zej_A Dardarin, leucine-rich 96.1 0.0022 7.5E-08 59.8 2.8 23 308-330 4-26 (184)
284 3bwd_D RAC-like GTP-binding pr 96.1 0.0013 4.6E-08 60.5 1.2 90 193-301 76-177 (182)
285 2h17_A ADP-ribosylation factor 96.1 0.0033 1.1E-07 58.3 3.9 94 192-299 84-177 (181)
286 2x77_A ADP-ribosylation factor 96.1 0.0011 3.8E-08 61.8 0.6 94 194-301 87-180 (189)
287 3bc1_A RAS-related protein RAB 96.1 0.0066 2.2E-07 56.1 5.9 92 191-300 88-180 (195)
288 1r8s_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 57.0 3.5 95 192-300 63-157 (164)
289 1ky3_A GTP-binding protein YPT 96.1 0.0041 1.4E-07 57.0 4.3 95 192-300 77-173 (182)
290 2bcg_Y Protein YP2, GTP-bindin 96.1 0.0026 8.8E-08 60.3 3.0 23 308-330 10-32 (206)
291 2q3h_A RAS homolog gene family 96.1 0.0028 9.7E-08 59.6 3.3 89 193-300 88-190 (201)
292 4gzl_A RAS-related C3 botulinu 96.1 0.0018 6.3E-08 61.6 1.9 90 192-300 97-200 (204)
293 3t5g_A GTP-binding protein RHE 96.1 0.0038 1.3E-07 57.5 4.0 21 308-328 8-28 (181)
294 2x2e_A Dynamin-1; nitration, h 96.1 0.0089 3E-07 62.3 7.3 24 307-330 32-55 (353)
295 1kk1_A EIF2gamma; initiation o 96.0 0.005 1.7E-07 65.6 5.4 94 192-301 102-196 (410)
296 1f5n_A Interferon-induced guan 96.0 0.0025 8.5E-08 71.2 3.1 23 308-330 40-62 (592)
297 1z0f_A RAB14, member RAS oncog 96.0 0.0042 1.4E-07 56.7 4.1 89 193-300 84-173 (179)
298 2il1_A RAB12; G-protein, GDP, 96.0 0.003 1E-07 59.3 3.1 22 308-329 28-49 (192)
299 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0045 1.5E-07 57.2 4.2 88 195-300 74-161 (189)
300 2q3h_A RAS homolog gene family 96.0 0.0038 1.3E-07 58.8 3.7 22 308-329 22-43 (201)
301 2o52_A RAS-related protein RAB 96.0 0.0027 9.3E-08 60.1 2.7 22 308-329 27-48 (200)
302 4djt_A GTP-binding nuclear pro 96.0 0.0041 1.4E-07 59.4 4.0 88 195-301 83-171 (218)
303 2hxs_A RAB-26, RAS-related pro 96.0 0.0052 1.8E-07 56.2 4.5 92 194-301 77-169 (178)
304 2x77_A ADP-ribosylation factor 96.0 0.021 7.3E-07 52.9 8.9 21 308-328 24-44 (189)
305 2c78_A Elongation factor TU-A; 96.0 0.004 1.4E-07 66.3 4.2 85 193-291 95-180 (405)
306 1z08_A RAS-related protein RAB 96.0 0.011 3.7E-07 53.5 6.6 90 192-300 74-164 (170)
307 1c1y_A RAS-related protein RAP 96.0 0.0048 1.6E-07 55.7 4.1 89 195-300 73-162 (167)
308 1u8z_A RAS-related protein RAL 96.0 0.0062 2.1E-07 54.7 4.8 89 194-300 73-162 (168)
309 2gf9_A RAS-related protein RAB 96.0 0.012 4E-07 54.8 6.9 89 193-300 91-180 (189)
310 3oes_A GTPase rhebl1; small GT 96.0 0.0045 1.5E-07 58.5 4.0 23 308-330 26-48 (201)
311 3vaa_A Shikimate kinase, SK; s 96.0 0.003 1E-07 60.1 2.8 37 293-330 12-49 (199)
312 2p67_A LAO/AO transport system 95.9 0.002 6.7E-08 67.2 1.6 46 289-335 39-85 (341)
313 3dz8_A RAS-related protein RAB 95.9 0.012 4.1E-07 54.9 6.9 91 192-301 91-182 (191)
314 2gco_A H9, RHO-related GTP-bin 95.9 0.004 1.4E-07 58.9 3.6 90 193-301 93-196 (201)
315 2fg5_A RAB-22B, RAS-related pr 95.9 0.0048 1.6E-07 57.8 4.1 89 194-301 93-182 (192)
316 3q72_A GTP-binding protein RAD 95.9 0.0075 2.6E-07 54.4 5.3 89 194-300 70-159 (166)
317 2a5j_A RAS-related protein RAB 95.9 0.013 4.5E-07 54.6 7.1 88 194-300 91-179 (191)
318 3zvr_A Dynamin-1; hydrolase, D 95.9 0.0042 1.4E-07 71.3 4.2 87 195-301 186-274 (772)
319 1ksh_A ARF-like protein 2; sma 95.9 0.0031 1E-07 58.5 2.6 97 191-301 80-176 (186)
320 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0026 9E-08 58.6 2.2 91 193-302 73-177 (186)
321 2gf0_A GTP-binding protein DI- 95.9 0.0077 2.6E-07 56.2 5.4 93 194-303 77-169 (199)
322 1r2q_A RAS-related protein RAB 95.9 0.0054 1.9E-07 55.4 4.1 90 193-301 75-165 (170)
323 2ew1_A RAS-related protein RAB 95.9 0.0033 1.1E-07 59.9 2.8 22 308-329 28-49 (201)
324 2b6h_A ADP-ribosylation factor 95.9 0.0079 2.7E-07 56.5 5.3 93 194-300 94-186 (192)
325 3tqc_A Pantothenate kinase; bi 95.9 0.0048 1.7E-07 63.7 4.0 23 309-331 95-117 (321)
326 2iwr_A Centaurin gamma 1; ANK 95.9 0.0092 3.2E-07 54.7 5.6 90 196-300 72-164 (178)
327 1f6b_A SAR1; gtpases, N-termin 95.8 0.0069 2.4E-07 57.3 4.8 95 193-299 89-193 (198)
328 2il1_A RAB12; G-protein, GDP, 95.8 0.0036 1.2E-07 58.7 2.7 89 194-300 96-185 (192)
329 2a9k_A RAS-related protein RAL 95.8 0.0063 2.2E-07 55.9 4.4 89 194-300 87-176 (187)
330 2j1l_A RHO-related GTP-binding 95.8 0.0027 9.4E-08 60.8 1.9 90 193-301 102-205 (214)
331 2y8e_A RAB-protein 6, GH09086P 95.8 0.013 4.5E-07 53.3 6.4 89 194-301 84-173 (179)
332 1z0j_A RAB-22, RAS-related pro 95.8 0.0039 1.3E-07 56.4 2.8 89 194-301 76-165 (170)
333 3izq_1 HBS1P, elongation facto 95.8 0.01 3.5E-07 66.7 6.7 99 188-297 260-364 (611)
334 3llu_A RAS-related GTP-binding 95.8 0.0029 9.9E-08 59.6 1.9 94 195-299 94-191 (196)
335 1moz_A ARL1, ADP-ribosylation 95.8 0.014 4.6E-07 53.7 6.5 94 192-300 81-175 (183)
336 2bov_A RAla, RAS-related prote 95.8 0.012 4.2E-07 55.1 6.2 89 194-300 83-172 (206)
337 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.0039 1.3E-07 56.9 2.6 25 304-328 21-45 (149)
338 3c5c_A RAS-like protein 12; GD 95.7 0.0062 2.1E-07 56.9 4.0 22 308-329 23-44 (187)
339 2bcg_Y Protein YP2, GTP-bindin 95.7 0.024 8.4E-07 53.3 8.2 90 193-301 77-167 (206)
340 2o5v_A DNA replication and rep 95.7 0.0033 1.1E-07 66.0 2.2 66 382-451 259-346 (359)
341 2fh5_B SR-beta, signal recogni 95.7 0.0073 2.5E-07 57.4 4.5 23 308-330 9-31 (214)
342 1w1w_A Structural maintenance 95.7 0.0055 1.9E-07 65.7 4.0 50 278-334 4-54 (430)
343 3gee_A MNME, tRNA modification 95.7 0.0078 2.7E-07 65.6 5.2 87 191-301 307-394 (476)
344 1lnz_A SPO0B-associated GTP-bi 95.7 0.0024 8.3E-08 66.6 1.1 22 308-329 160-181 (342)
345 3r7w_A Gtpase1, GTP-binding pr 95.7 0.0041 1.4E-07 63.7 2.7 22 308-329 5-26 (307)
346 3oes_A GTPase rhebl1; small GT 95.7 0.0068 2.3E-07 57.2 4.0 91 193-301 92-183 (201)
347 3q85_A GTP-binding protein REM 95.7 0.0077 2.6E-07 54.6 4.3 87 196-300 75-162 (169)
348 2nzj_A GTP-binding protein REM 95.7 0.012 4.1E-07 53.5 5.6 90 193-300 74-164 (175)
349 2ew1_A RAS-related protein RAB 95.7 0.0087 3E-07 57.0 4.7 92 190-300 92-184 (201)
350 2j0v_A RAC-like GTP-binding pr 95.7 0.0024 8.3E-08 60.7 0.8 90 193-301 77-176 (212)
351 2bme_A RAB4A, RAS-related prot 95.6 0.017 5.9E-07 53.1 6.6 92 190-300 76-168 (186)
352 1d2e_A Elongation factor TU (E 95.6 0.011 3.7E-07 62.8 5.9 87 191-291 84-171 (397)
353 4gzl_A RAS-related C3 botulinu 95.6 0.0067 2.3E-07 57.6 3.9 22 308-329 32-53 (204)
354 2fv8_A H6, RHO-related GTP-bin 95.6 0.0051 1.7E-07 58.5 3.0 90 193-301 93-196 (207)
355 1knq_A Gluconate kinase; ALFA/ 95.6 0.005 1.7E-07 56.9 2.8 23 308-330 10-32 (175)
356 1svm_A Large T antigen; AAA+ f 95.6 0.0049 1.7E-07 65.1 3.0 36 294-330 157-193 (377)
357 2vp4_A Deoxynucleoside kinase; 95.6 0.0046 1.6E-07 60.4 2.6 25 305-329 18-43 (230)
358 1m2o_B GTP-binding protein SAR 95.6 0.0063 2.2E-07 57.1 3.5 96 193-299 87-186 (190)
359 1z06_A RAS-related protein RAB 95.6 0.0072 2.5E-07 56.3 3.8 89 193-299 90-182 (189)
360 3ihw_A Centg3; RAS, centaurin, 95.6 0.011 3.7E-07 55.2 5.0 88 196-300 85-175 (184)
361 2gj8_A MNME, tRNA modification 95.6 0.0036 1.2E-07 57.9 1.7 83 193-301 80-162 (172)
362 2atx_A Small GTP binding prote 95.6 0.0077 2.6E-07 56.2 4.0 22 308-329 20-41 (194)
363 2nzj_A GTP-binding protein REM 95.6 0.0054 1.9E-07 55.8 2.8 22 308-329 6-27 (175)
364 2oil_A CATX-8, RAS-related pro 95.6 0.012 4E-07 54.9 5.2 88 194-300 95-183 (193)
365 1kao_A RAP2A; GTP-binding prot 95.6 0.0049 1.7E-07 55.4 2.4 89 194-300 72-161 (167)
366 2px0_A Flagellar biosynthesis 95.6 0.0066 2.3E-07 61.9 3.7 38 308-351 107-144 (296)
367 3cpj_B GTP-binding protein YPT 95.5 0.0051 1.7E-07 59.3 2.6 23 308-330 15-37 (223)
368 2erx_A GTP-binding protein DI- 95.5 0.0058 2E-07 55.3 2.8 22 308-329 5-26 (172)
369 2fn4_A P23, RAS-related protei 95.5 0.0076 2.6E-07 55.1 3.6 88 195-300 79-167 (181)
370 1fzq_A ADP-ribosylation factor 95.5 0.014 4.9E-07 54.1 5.6 96 192-301 79-174 (181)
371 3th5_A RAS-related C3 botulinu 94.5 0.0023 7.7E-08 60.6 0.0 93 193-299 98-199 (204)
372 2fh5_B SR-beta, signal recogni 95.5 0.025 8.6E-07 53.6 7.4 69 193-269 75-143 (214)
373 1kao_A RAP2A; GTP-binding prot 95.5 0.0057 1.9E-07 54.9 2.7 22 308-329 5-26 (167)
374 3tr5_A RF-3, peptide chain rel 95.5 0.017 5.9E-07 63.7 7.0 50 191-255 100-149 (528)
375 3q85_A GTP-binding protein REM 95.5 0.0064 2.2E-07 55.1 2.9 23 308-330 4-26 (169)
376 1m7b_A RND3/RHOE small GTP-bin 95.4 0.0058 2E-07 56.7 2.6 90 193-301 75-179 (184)
377 1cke_A CK, MSSA, protein (cyti 95.4 0.0031 1E-07 60.9 0.6 23 308-330 7-29 (227)
378 2j0v_A RAC-like GTP-binding pr 95.4 0.009 3.1E-07 56.7 3.9 22 308-329 11-32 (212)
379 1fzq_A ADP-ribosylation factor 95.4 0.0054 1.8E-07 57.0 2.2 22 308-329 18-39 (181)
380 1c1y_A RAS-related protein RAP 95.4 0.0065 2.2E-07 54.7 2.7 22 308-329 5-26 (167)
381 1z0j_A RAB-22, RAS-related pro 95.4 0.0064 2.2E-07 54.9 2.7 23 308-330 8-30 (170)
382 2j69_A Bacterial dynamin-like 95.4 0.0048 1.7E-07 70.4 2.1 23 308-330 71-93 (695)
383 2ce2_X GTPase HRAS; signaling 95.4 0.0062 2.1E-07 54.5 2.4 22 308-329 5-26 (166)
384 3o47_A ADP-ribosylation factor 95.4 0.015 5.2E-07 60.1 5.6 95 193-301 229-323 (329)
385 2p5s_A RAS and EF-hand domain 95.4 0.021 7.1E-07 53.7 6.2 88 194-300 98-192 (199)
386 2o52_A RAS-related protein RAB 95.4 0.021 7.1E-07 53.9 6.2 88 194-300 95-183 (200)
387 1ek0_A Protein (GTP-binding pr 95.4 0.0069 2.4E-07 54.6 2.7 23 308-330 5-27 (170)
388 1gwn_A RHO-related GTP-binding 95.3 0.0054 1.8E-07 58.6 2.0 91 193-301 96-200 (205)
389 1f60_A Elongation factor EEF1A 95.3 0.0084 2.9E-07 65.0 3.7 128 190-333 102-237 (458)
390 3cr8_A Sulfate adenylyltranfer 95.3 0.0045 1.5E-07 68.7 1.6 32 304-335 366-398 (552)
391 2atv_A RERG, RAS-like estrogen 95.3 0.012 4.3E-07 55.0 4.5 88 195-300 97-186 (196)
392 3gj0_A GTP-binding nuclear pro 95.3 0.011 3.9E-07 56.5 4.3 85 195-300 86-170 (221)
393 2ged_A SR-beta, signal recogni 95.3 0.007 2.4E-07 56.4 2.7 23 308-330 50-72 (193)
394 3qq5_A Small GTP-binding prote 95.3 0.0025 8.5E-08 68.5 -0.6 58 308-380 36-95 (423)
395 2qpt_A EH domain-containing pr 95.3 0.01 3.5E-07 65.8 4.4 23 308-330 67-89 (550)
396 1r2q_A RAS-related protein RAB 95.3 0.0076 2.6E-07 54.4 2.7 22 308-329 8-29 (170)
397 2dy1_A Elongation factor G; tr 95.3 0.018 6E-07 65.4 6.2 25 308-332 11-35 (665)
398 2ywe_A GTP-binding protein LEP 95.2 0.014 4.9E-07 65.2 5.3 119 193-332 93-221 (600)
399 3mca_A HBS1, elongation factor 95.2 0.016 5.4E-07 64.9 5.6 86 194-295 276-373 (592)
400 3cpj_B GTP-binding protein YPT 95.2 0.026 9E-07 54.1 6.5 91 193-302 82-173 (223)
401 2oil_A CATX-8, RAS-related pro 95.2 0.0081 2.8E-07 56.0 2.7 23 308-330 27-49 (193)
402 2erx_A GTP-binding protein DI- 95.2 0.013 4.5E-07 52.8 4.1 91 195-302 73-164 (172)
403 1ky3_A GTP-binding protein YPT 95.2 0.0082 2.8E-07 54.9 2.7 23 308-330 10-32 (182)
404 3qq5_A Small GTP-binding prote 95.2 0.007 2.4E-07 65.0 2.4 85 192-302 109-193 (423)
405 2cjw_A GTP-binding protein GEM 95.2 0.0084 2.9E-07 56.5 2.7 22 308-329 8-29 (192)
406 1r8s_A ADP-ribosylation factor 95.2 0.0087 3E-07 53.9 2.7 22 308-329 2-23 (164)
407 3geh_A MNME, tRNA modification 95.2 0.01 3.4E-07 64.5 3.6 84 190-301 297-380 (462)
408 4dkx_A RAS-related protein RAB 95.1 0.021 7.3E-07 55.3 5.6 87 194-299 83-170 (216)
409 1upt_A ARL1, ADP-ribosylation 95.1 0.0089 3.1E-07 54.1 2.7 22 308-329 9-30 (171)
410 2hxs_A RAB-26, RAS-related pro 95.1 0.0096 3.3E-07 54.4 2.9 23 308-330 8-30 (178)
411 1z0f_A RAB14, member RAS oncog 95.1 0.009 3.1E-07 54.4 2.7 23 308-330 17-39 (179)
412 3bc1_A RAS-related protein RAB 95.1 0.0089 3.1E-07 55.2 2.7 22 308-329 13-34 (195)
413 2o5v_A DNA replication and rep 95.1 0.0068 2.3E-07 63.6 2.0 35 374-409 291-326 (359)
414 3c5h_A Glucocorticoid receptor 95.1 0.029 9.8E-07 55.5 6.4 87 196-299 162-249 (255)
415 3cbq_A GTP-binding protein REM 95.1 0.023 7.7E-07 53.6 5.4 88 195-300 95-183 (195)
416 2qor_A Guanylate kinase; phosp 95.1 0.0093 3.2E-07 56.8 2.7 25 306-330 11-36 (204)
417 3qks_A DNA double-strand break 95.0 0.009 3.1E-07 57.3 2.6 25 304-328 21-45 (203)
418 2wkq_A NPH1-1, RAS-related C3 95.0 0.0065 2.2E-07 61.8 1.6 91 192-301 222-326 (332)
419 3c5c_A RAS-like protein 12; GD 95.0 0.018 6E-07 53.7 4.5 91 194-300 89-181 (187)
420 1moz_A ARL1, ADP-ribosylation 95.0 0.007 2.4E-07 55.7 1.6 21 308-328 20-40 (183)
421 2efe_B Small GTP-binding prote 95.0 0.01 3.5E-07 54.3 2.7 23 308-330 14-36 (181)
422 1jjv_A Dephospho-COA kinase; P 94.9 0.011 3.8E-07 56.1 2.9 20 309-328 5-24 (206)
423 3cbq_A GTP-binding protein REM 94.9 0.009 3.1E-07 56.4 2.2 23 308-330 25-47 (195)
424 2gf9_A RAS-related protein RAB 94.9 0.011 3.7E-07 55.1 2.7 23 308-330 24-46 (189)
425 2if2_A Dephospho-COA kinase; a 94.9 0.01 3.5E-07 56.3 2.5 21 308-328 3-23 (204)
426 1r5b_A Eukaryotic peptide chai 94.9 0.043 1.5E-06 59.5 7.7 92 192-297 140-244 (467)
427 1n0w_A DNA repair protein RAD5 94.9 0.012 4E-07 57.1 2.9 26 304-329 21-47 (243)
428 3kkq_A RAS-related protein M-R 94.9 0.011 3.9E-07 54.3 2.7 22 308-329 20-41 (183)
429 2gf0_A GTP-binding protein DI- 94.9 0.01 3.5E-07 55.3 2.4 22 308-329 10-31 (199)
430 3gj0_A GTP-binding nuclear pro 94.9 0.0071 2.4E-07 58.0 1.3 20 308-327 17-36 (221)
431 3lvq_E ARF-GAP with SH3 domain 94.8 0.071 2.4E-06 57.9 9.4 23 308-330 324-346 (497)
432 1jwy_B Dynamin A GTPase domain 94.8 0.01 3.5E-07 60.3 2.5 23 308-330 26-48 (315)
433 1ksh_A ARF-like protein 2; sma 94.8 0.012 4.1E-07 54.4 2.7 22 308-329 20-41 (186)
434 2aka_B Dynamin-1; fusion prote 94.8 0.01 3.6E-07 59.6 2.5 24 308-331 28-51 (299)
435 3ihw_A Centg3; RAS, centaurin, 94.8 0.012 4.1E-07 54.9 2.7 22 308-329 22-43 (184)
436 3l0i_B RAS-related protein RAB 94.8 0.0049 1.7E-07 58.1 -0.1 89 194-301 103-192 (199)
437 1z06_A RAS-related protein RAB 94.8 0.012 4.2E-07 54.6 2.7 22 308-329 22-43 (189)
438 1zu4_A FTSY; GTPase, signal re 94.8 0.011 3.8E-07 61.0 2.5 35 301-335 99-134 (320)
439 1zbd_A Rabphilin-3A; G protein 94.8 0.013 4.5E-07 55.0 2.9 22 308-329 10-31 (203)
440 3dz8_A RAS-related protein RAB 94.8 0.011 3.9E-07 55.0 2.4 23 308-330 25-47 (191)
441 2wji_A Ferrous iron transport 94.7 0.012 4.2E-07 53.6 2.5 79 196-300 81-160 (165)
442 1ex7_A Guanylate kinase; subst 94.7 0.014 4.7E-07 55.5 2.9 22 309-330 4-25 (186)
443 3iby_A Ferrous iron transport 94.7 0.005 1.7E-07 61.4 -0.2 82 195-301 82-163 (256)
444 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.013 4.5E-07 53.8 2.7 22 308-329 7-28 (186)
445 3t5d_A Septin-7; GTP-binding p 94.7 0.019 6.5E-07 57.4 4.0 94 197-315 116-210 (274)
446 2fg5_A RAB-22B, RAS-related pr 94.7 0.012 4.1E-07 55.0 2.4 23 308-330 25-47 (192)
447 3t1o_A Gliding protein MGLA; G 94.7 0.013 4.6E-07 54.2 2.7 23 308-330 16-38 (198)
448 4bas_A ADP-ribosylation factor 94.7 0.013 4.3E-07 54.7 2.5 22 308-329 19-40 (199)
449 1zd9_A ADP-ribosylation factor 94.7 0.014 4.7E-07 54.4 2.7 22 308-329 24-45 (188)
450 2a5j_A RAS-related protein RAB 94.7 0.014 4.7E-07 54.5 2.7 22 308-329 23-44 (191)
451 1m7b_A RND3/RHOE small GTP-bin 94.7 0.012 4.3E-07 54.4 2.4 22 308-329 9-30 (184)
452 3dpu_A RAB family protein; roc 94.7 0.028 9.6E-07 61.9 5.6 85 195-302 120-205 (535)
453 2h57_A ADP-ribosylation factor 94.7 0.011 3.7E-07 55.1 1.9 23 308-330 23-45 (190)
454 2cxx_A Probable GTP-binding pr 94.7 0.048 1.6E-06 50.2 6.4 53 242-301 124-180 (190)
455 3t61_A Gluconokinase; PSI-biol 94.7 0.014 4.8E-07 55.3 2.8 23 308-330 20-42 (202)
456 3reg_A RHO-like small GTPase; 94.6 0.014 4.8E-07 54.5 2.7 23 308-330 25-47 (194)
457 1lnz_A SPO0B-associated GTP-bi 94.6 0.019 6.5E-07 59.8 3.9 92 195-302 235-327 (342)
458 2aka_B Dynamin-1; fusion prote 94.6 0.017 5.8E-07 58.1 3.4 91 190-299 155-247 (299)
459 1x3s_A RAS-related protein RAB 94.6 0.014 4.9E-07 54.0 2.7 23 308-330 17-39 (195)
460 2qt1_A Nicotinamide riboside k 94.6 0.017 5.7E-07 55.0 3.2 23 308-330 23-45 (207)
461 1zj6_A ADP-ribosylation factor 94.6 0.014 4.8E-07 54.1 2.6 21 308-328 18-38 (187)
462 1np6_A Molybdopterin-guanine d 94.6 0.015 5.1E-07 54.6 2.8 24 308-331 8-31 (174)
463 1g7s_A Translation initiation 94.6 0.029 9.8E-07 62.8 5.4 93 193-300 90-213 (594)
464 2p5s_A RAS and EF-hand domain 94.6 0.015 5.2E-07 54.7 2.7 23 308-330 30-52 (199)
465 2e87_A Hypothetical protein PH 94.6 0.085 2.9E-06 54.9 8.8 90 193-301 243-332 (357)
466 2iwr_A Centaurin gamma 1; ANK 94.5 0.011 3.9E-07 54.1 1.8 22 308-329 9-30 (178)
467 2g3y_A GTP-binding protein GEM 94.5 0.016 5.4E-07 55.9 2.8 22 308-329 39-60 (211)
468 3lxx_A GTPase IMAP family memb 94.5 0.043 1.5E-06 53.4 6.0 62 183-255 99-160 (239)
469 3bwd_D RAC-like GTP-binding pr 94.5 0.016 5.4E-07 53.1 2.7 22 308-329 10-31 (182)
470 3i8s_A Ferrous iron transport 94.5 0.0047 1.6E-07 62.1 -1.0 82 195-301 84-165 (274)
471 2atv_A RERG, RAS-like estrogen 94.5 0.016 5.4E-07 54.3 2.7 22 308-329 30-51 (196)
472 1nrj_B SR-beta, signal recogni 94.5 0.016 5.5E-07 55.2 2.7 21 308-328 14-34 (218)
473 3mca_A HBS1, elongation factor 94.5 0.01 3.5E-07 66.5 1.4 22 308-329 179-200 (592)
474 3avx_A Elongation factor TS, e 94.4 0.05 1.7E-06 64.9 7.2 86 191-290 377-463 (1289)
475 2dby_A GTP-binding protein; GD 94.4 0.016 5.5E-07 61.0 2.8 23 308-330 3-25 (368)
476 2f7s_A C25KG, RAS-related prot 94.4 0.017 6E-07 54.9 2.9 22 308-329 27-48 (217)
477 3lvq_E ARF-GAP with SH3 domain 94.4 0.03 1E-06 60.9 5.0 92 192-301 385-480 (497)
478 1sxj_E Activator 1 40 kDa subu 94.4 0.018 6E-07 59.4 3.0 30 308-337 38-68 (354)
479 2fv8_A H6, RHO-related GTP-bin 94.4 0.014 4.9E-07 55.3 2.1 23 308-330 27-49 (207)
480 2fu5_C RAS-related protein RAB 94.3 0.013 4.3E-07 54.0 1.5 22 308-329 10-31 (183)
481 1gwn_A RHO-related GTP-binding 94.3 0.017 5.9E-07 55.0 2.4 23 308-330 30-52 (205)
482 2b6h_A ADP-ribosylation factor 94.2 0.024 8.4E-07 53.1 3.4 21 308-328 31-51 (192)
483 2pez_A Bifunctional 3'-phospho 94.2 0.016 5.5E-07 53.8 2.0 25 308-332 7-31 (179)
484 3llu_A RAS-related GTP-binding 94.2 0.019 6.4E-07 53.9 2.6 23 308-330 22-44 (196)
485 2j1l_A RHO-related GTP-binding 94.2 0.019 6.4E-07 54.9 2.6 22 308-329 36-57 (214)
486 2zej_A Dardarin, leucine-rich 94.2 0.0053 1.8E-07 57.1 -1.3 89 196-299 79-172 (184)
487 3kb2_A SPBC2 prophage-derived 94.2 0.022 7.7E-07 51.9 2.9 22 309-330 4-25 (173)
488 4djt_A GTP-binding nuclear pro 94.1 0.01 3.6E-07 56.5 0.6 22 308-329 13-34 (218)
489 1sxj_C Activator 1 40 kDa subu 94.1 0.015 5.2E-07 60.0 1.8 42 290-332 28-72 (340)
490 2gco_A H9, RHO-related GTP-bin 94.1 0.02 6.8E-07 54.0 2.4 23 308-330 27-49 (201)
491 3p26_A Elongation factor 1 alp 94.1 0.018 6.3E-07 62.7 2.5 22 308-329 35-56 (483)
492 1ko7_A HPR kinase/phosphatase; 94.0 0.022 7.6E-07 58.5 2.8 72 243-328 82-166 (314)
493 3j2k_7 ERF3, eukaryotic polype 94.0 0.022 7.4E-07 61.4 2.8 23 308-330 19-41 (439)
494 2hup_A RAS-related protein RAB 93.8 0.023 8E-07 53.6 2.4 22 308-329 31-52 (201)
495 3q3j_B RHO-related GTP-binding 93.8 0.026 8.9E-07 54.0 2.7 22 308-329 29-50 (214)
496 2qtf_A Protein HFLX, GTP-bindi 93.8 0.071 2.4E-06 55.9 6.2 95 192-301 253-350 (364)
497 2g3y_A GTP-binding protein GEM 93.7 0.062 2.1E-06 51.7 5.3 89 194-300 109-198 (211)
498 2wkq_A NPH1-1, RAS-related C3 93.7 0.035 1.2E-06 56.3 3.7 22 308-329 157-178 (332)
499 3a1s_A Iron(II) transport prot 93.7 0.027 9.4E-07 56.0 2.8 82 195-301 82-163 (258)
500 4a1f_A DNAB helicase, replicat 93.7 0.1 3.6E-06 54.1 7.2 111 304-433 43-160 (338)
No 1
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=100.00 E-value=4.7e-53 Score=451.04 Aligned_cols=365 Identities=31% Similarity=0.571 Sum_probs=247.4
Q ss_pred CCCCCcCccccccCCCCCccccCCcchhhhhhhcccccccchhhhhhhhccCCceeecccccchhhhcCCCceecccccc
Q 007511 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (601)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~C~RC~~ 161 (601)
.+|.||||.||++||++|||.|... +++ ..+.++|+|||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----------------------~~~-----------------~~~~~~C~RC~~ 44 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKSV-----------------------LEK-----------------DAEEVICQRCFR 44 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChHH-----------------------hcC-----------------CCCCEEchhHHH
Confidence 5899999999999999999997531 110 124699999999
Q ss_pred ccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCC
Q 007511 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (601)
Q Consensus 162 l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~ 241 (601)
++|||++.+.. ++.++|...+ ......+++|++|+|++||++++.+.+.+++. + .
T Consensus 45 l~hy~~~~~v~----~~~e~f~~~L----~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~----------------~-~ 99 (369)
T 3ec1_A 45 LKHYNEVQDVP----LDDDDFLSML----HRIGESKALVVNIVDIFDFNGSFIPGLPRFAA----------------D-N 99 (369)
T ss_dssp ------------------CHHHHHH----HHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT----------------T-S
T ss_pred hhccccccCCc----CCHHHHHHHH----HHhhccCcEEEEEEECCCCCCchhhHHHHHhC----------------C-C
Confidence 99999987654 3566676443 33445688999999999999998888877653 1 2
Q ss_pred cEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 242 ~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
|+++|+||+||++.+...+.+.+|+.++++..|. ...+++.+|+.+++|.+.+++.+..+. ....++++|.+|+||||
T Consensus 100 piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 100 PILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL-CPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVGKST 177 (369)
T ss_dssp CEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC-CCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSSHHH
T ss_pred CEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC-CcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCchHH
Confidence 7999999999998766677889999888777763 235789999999999999999885543 34579999999999999
Q ss_pred HHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhccccc
Q 007511 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 322 LLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iara 401 (601)
|+|+|+|...... ..+..+..||||.+...+. +.....++||||+...++....+...+.+.+...+.
T Consensus 178 liN~L~~~~~~~~----------~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 245 (369)
T 3ec1_A 178 FINRIIEEATGKG----------NVITTSYFPGTTLDMIEIP--LESGATLYDTPGIINHHQMAHFVDARDLKIITPKRE 245 (369)
T ss_dssp HHHHHHHHHHHTT----------CCCEEEECTTSSCEEEEEE--CSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSC
T ss_pred HHHHHHhhccCCc----------cceeecCCCCeEEeeEEEE--eCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccc
Confidence 9999998632111 1234566799998776654 344578999999988776777788777888877788
Q ss_pred cCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchHHHHHHHcCCccCCCCcHhHHHHhCCce
Q 007511 402 LKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHFGRQLQPPIGEKRVEELGKWV 481 (601)
Q Consensus 402 L~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~e~~~~~~g~~l~pP~~~~~l~~l~~~~ 481 (601)
+++.++++++++..+++++.+.+...... ..+..+.+....+|.++++++.++|++++|..+.||..++ ++.+++|+
T Consensus 246 i~~~~~~l~~~~~~~~g~l~~l~~l~~~~--~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~-~~~~~~l~ 322 (369)
T 3ec1_A 246 IHPRVYQLNEGQTLFFGGLARLDYIKGGR--RSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRY-AAEFPPLV 322 (369)
T ss_dssp CCCEEEEECTTEEEEETTTEEEEEEESSS--EEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGG-TTTCCCEE
T ss_pred cCceEEEEcCCceEEECCEEEEEEccCCC--ceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchh-hhhccCcE
Confidence 89999999998888877777654433211 1345566777778999999999999999999999998755 77889999
Q ss_pred eeEEEEecCCCCCccceEEEcCCcEEEeeecCCcEEEEEcCCceEEEEcCCCC
Q 007511 482 RKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLRNALL 534 (601)
Q Consensus 482 ~~~~~i~g~~~~~~~~Di~i~glGwi~v~~~g~~~i~v~tp~gv~v~~R~~l~ 534 (601)
+++|.+.++ ..||+|+|||||+|+. +++.+++|+|+||+|++|+||+
T Consensus 323 ~~~~~~~~~-----~~di~i~glgwi~v~~-~~~~~~~~~p~~v~v~~R~~li 369 (369)
T 3ec1_A 323 PRSLSVKER-----KTDIVFSGLGWVTCND-PGAQLVVHAPKGVDVFIRQSLI 369 (369)
T ss_dssp EEEEECCSS-----SEEEEETTTEEEEESS-SCCEEEEEEETTSCEEEEECCC
T ss_pred EEEEEeCCC-----ceeEEEccCceEEeeC-CceEEEEEeCCCceEEeecCCC
Confidence 999988764 5899999999999984 4789999999999999999986
No 2
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=100.00 E-value=6.4e-52 Score=442.02 Aligned_cols=364 Identities=31% Similarity=0.575 Sum_probs=242.1
Q ss_pred CCCCCcCccccccCCCCCccccCCcchhhhhhhcccccccchhhhhhhhccCCceeecccccchhhhcCCCceecccccc
Q 007511 82 TVCPGCGVLMQDTNPKHPGYFIRPSQNLNKVRKSHLVHVANESEFSNSLKKGGLVVFEAENETSEVKKHEKPVVCARCHA 161 (601)
Q Consensus 82 ~~C~GCG~~lQ~~dp~~pGY~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~C~RC~~ 161 (601)
.+|.||||.||++||+.|||.|... ++ .+.++|||||+
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~~-----------------------~~-------------------~~~~~C~Rc~~ 42 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPASS-----------------------LE-------------------KEQVICQRCFR 42 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCChHH-----------------------cc-------------------CCCcEEhhhhh
Confidence 5899999999999999999997531 11 12699999999
Q ss_pred ccccCcccccccccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCC
Q 007511 162 LRHYGKVKDVTVENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVP 241 (601)
Q Consensus 162 l~hy~~~~~~~~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~ 241 (601)
++|||++.... ++.+.|... +......+++|++|+|++|+++++.+.+.+++. + .
T Consensus 43 l~hy~~~~~v~----~~~e~f~~~----l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~----------------~-~ 97 (368)
T 3h2y_A 43 LKHYNEIQDVS----LTDDDFLRI----LNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVG----------------N-N 97 (368)
T ss_dssp -----------------CHHHHHH----HHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSS----------------S-S
T ss_pred hhccCccccCC----CCHHHHHHH----HHHHhccCcEEEEEEECCCCcccHHHHHHHHhC----------------C-C
Confidence 99999987654 345566543 333445678999999999988777777666542 2 2
Q ss_pred cEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 242 ~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
|+++|+||+||++.....+.+.+|+.+.++..|. ...+++.+|+.+++|.+.+++.+..+. .+..++++|.+|+||||
T Consensus 98 p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~-~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 98 KVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGL-KPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVGKST 175 (368)
T ss_dssp CEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTC-CCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSSHHH
T ss_pred cEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCC-CcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCChhH
Confidence 7999999999998766667889999888777763 234789999999999999999885543 34579999999999999
Q ss_pred HHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhccccc
Q 007511 322 LLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE 401 (601)
Q Consensus 322 LLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iara 401 (601)
|+|+|+|... |... .....+..||||.+...+. +.....++||||+...++....+...+.+.+...+.
T Consensus 176 liN~L~~~~~---~~~~------~~~~~~~~~gtT~~~~~~~--~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~ 244 (368)
T 3h2y_A 176 FINRMIKEFS---DETE------NVITTSHFPGTTLDLIDIP--LDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKE 244 (368)
T ss_dssp HHHHHHHHHT---TSCS------SCCEEECCC----CEEEEE--SSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSC
T ss_pred HHHHHHhhhc---cccc------cceecCCCCCeecceEEEE--ecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccc
Confidence 9999998642 1100 1234567799997766654 333478999999988777777888888888888888
Q ss_pred cCCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEEeecCEEEeecceecchHHHHHHHcCCccCCCCcHhHHHHhCCce
Q 007511 402 LKPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTVWASPYLPLHMGKTENACTMVEKHFGRQLQPPIGEKRVEELGKWV 481 (601)
Q Consensus 402 L~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~Gki~~a~e~~~~~~g~~l~pP~~~~~l~~l~~~~ 481 (601)
++|.++++++++..+++++.+.+...... ..+..+++....+|.++++++.++|++++|..+.||..+ .++.+++|+
T Consensus 245 i~~~~~~l~~~~~~~~g~l~~~d~l~~~~--~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~-~~~~~~~l~ 321 (368)
T 3h2y_A 245 IKPMVFQLNEEQTLFFSGLARFDYVSGGR--RAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPE-ELENMPELV 321 (368)
T ss_dssp CCCEEEEECTTEEEEETTTEEEEEEESSS--EEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSCHH-HHHTSCCEE
T ss_pred cCceEEEEcCCCEEEEcceEEEEEecCCC--ceEEEEecCccccccccHHHHHHHHHHHhCCccCCCchh-hHhhccCcE
Confidence 89999999998887777777654433211 134556677777899999999999999999999999864 478899999
Q ss_pred eeEEEEecCCCCCccceEEEcCCcEEEeeecCCcEEEEEcCCceEEEEcCCCC
Q 007511 482 RKEFHVSGSSWDSSSVDIAAAGLGWFSVRLKGEAALGVWTYEGVDIVLRNALL 534 (601)
Q Consensus 482 ~~~~~i~g~~~~~~~~Di~i~glGwi~v~~~g~~~i~v~tp~gv~v~~R~~l~ 534 (601)
.++|.+.++ ..||+|+|||||+|+.. ++.+++|+|+||+|++|+||+
T Consensus 322 ~~~~~~~~~-----~~di~i~glgwi~v~~~-~~~~~~~~p~~v~v~~r~~~~ 368 (368)
T 3h2y_A 322 KYEFNIREP-----KTDVVFSGLGWVTVNEP-GAKIVAHVPKGVSVSLRKSLI 368 (368)
T ss_dssp EEEEECCSS-----SEEEEETTTEEEEECSS-CCEEEEEEETTCCEEEEECCC
T ss_pred EEEEEecCC-----cceEEEcccceEEEecC-ceEEEEEecCCcEEEeecCcC
Confidence 999988764 48999999999999844 789999999999999999986
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=7.3e-24 Score=223.59 Aligned_cols=177 Identities=17% Similarity=0.244 Sum_probs=145.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------cccccee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~ 345 (601)
+.+.++.+.||...+++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+. ..++.++
T Consensus 5 l~i~~ls~~y~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 5 LHIGHLSKSFQNTPVLNDI-SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 6678889999999999999 99999998655 999999999999999999999998541 2346799
Q ss_pred EeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 346 HLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
+++|++. |.+| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+||||| +|++++|
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999876 8888 888876433211 157889999987 7899999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc---hHHHHH
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN---ACTMVE 458 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~---a~e~~~ 458 (601)
|+..+..+...++....+.|.|+++++ .+||++++|++|++.. ..++|.
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 888889998877766655577887543 5799999999999854 344444
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=2.4e-24 Score=228.83 Aligned_cols=171 Identities=20% Similarity=0.266 Sum_probs=144.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.||...+++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+ ...++.+++++|
T Consensus 4 l~~~~l~~~yg~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 4 VQLQNVTKAWGEVVVSKDI-NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEeEEEEECCEEEEeee-EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 6678889999999999999 99999998655 99999999999999999999999955 234567999999
Q ss_pred cCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |.+| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+||||| +|++++|
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 986 8888 888776432211 256899999987 7899999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 888899999999988766577887443 5899999999999854
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.89 E-value=3e-23 Score=219.29 Aligned_cols=171 Identities=20% Similarity=0.225 Sum_probs=142.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+|||||||||++|+|+.+|++|.+ ...++.+++++|
T Consensus 4 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGV-SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEECCEEEEeee-EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5677888999888899999 99999997655 99999999999999999999999954 123567999999
Q ss_pred cCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+||||| +|++++|
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 875 8877 888876533211 246889999977 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 889999999999988765577777544 4799999999999854
No 6
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.89 E-value=6.3e-24 Score=224.27 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=140.5
Q ss_pred EEEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------cc
Q 007511 281 LHFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------------EE 340 (601)
Q Consensus 281 V~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------------~~ 340 (601)
+.+.++.+.|+. ..+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. ..
T Consensus 25 i~v~~ls~~y~~~~~~~~aL~~v-sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 25 IKLSNITKVFHQGTRTIQALNNV-SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp EEEEEEEEEEECSSSEEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEEEeEEEEeCCCCCCeEEEEee-EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 566777777753 3589999 99999998665 999999999999999999999999541 12
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++.+++++|.+. |.+| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+||||| +|+
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 567999999876 7767 787765432111 256889999987 7889999999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+++| |+..+..+..+++.+..+.|.|++.++ .+||++++|++|++.
T Consensus 184 lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999 899999999999998776678887544 479999999999984
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=4.2e-23 Score=218.43 Aligned_cols=171 Identities=21% Similarity=0.261 Sum_probs=142.2
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.||...+++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+ ...++.+++++|
T Consensus 4 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNI-NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEEEESSSSEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEeEEEEECCEEEEEee-EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5677888999888899999 99999997655 99999999999999999999999854 123467999999
Q ss_pred cCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+++.+.... .. ..++++.+||.. .++++.+|||||||||+|||+| +|++++|
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 875 8877 7887764221 11 146899999987 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 888999999999988765577777544 4799999999999853
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.88 E-value=1.5e-23 Score=221.10 Aligned_cols=173 Identities=21% Similarity=0.259 Sum_probs=143.8
Q ss_pred ceEEEEEeEeec-CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeE
Q 007511 279 TKLHFVSAVKNW-GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSH 346 (601)
Q Consensus 279 ~~V~lvSa~kg~-G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~ 346 (601)
..+.+.++.+.| |...+++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+ ...++.+++
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGV-SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeee-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 457788999999 888899999 99999997655 99999999999999999999999854 223567999
Q ss_pred eeecCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
++|++. |.+| .+++.+..... . ..++++.+||.. .++++.+|||||||||+||||| +|++++|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 171 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999875 8877 88876643211 1 146899999987 7889999999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceecc
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.|.|++++ ..+||++++|++|++..
T Consensus 172 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp TTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 88999999999998876556777743 35799999999999854
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=5.2e-23 Score=218.51 Aligned_cols=171 Identities=16% Similarity=0.218 Sum_probs=139.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+|||||||||++|+|+.+|++|.+ ...++.+++++|
T Consensus 12 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKL-NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEEEECCEEEEeee-EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 6777889999888899999 99999997655 99999999999999999999999955 123567999999
Q ss_pred cCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-----
Q 007511 350 APV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI----- 409 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL----- 409 (601)
++. |++| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+|||+| +|++++|
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 875 8877 788776432211 146899999987 7889999999999999999999 9999999
Q ss_pred --ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 410 --KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 410 --D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
|+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 889999999999988766577777544 4799999999999853
No 10
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=9.2e-23 Score=215.50 Aligned_cols=171 Identities=18% Similarity=0.182 Sum_probs=142.2
Q ss_pred EEEEEeEeecCCcc--ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc---------------ccccc
Q 007511 281 LHFVSAVKNWGLKS--LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD---------------GEEKN 342 (601)
Q Consensus 281 V~lvSa~kg~G~~~--LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i---------------~~~~~ 342 (601)
+.+.++.+.|+... +++++ ++.+.+|+++. +|+|||||||||++|+|+.+|++|.+ ...++
T Consensus 4 l~i~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNV-NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEE-EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECCEeeeeEece-EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 55678888898777 99999 99999997655 99999999999999999999999854 12356
Q ss_pred ceeEeeecCC--CCCc-eeeeeeeccccc---------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 343 IVSHLTEAPV--PGTT-LGIVRVEGVLPA---------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT-~~~i~~~~~l~~---------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
.+++++|++. |++| .+++.+.....+ ..++++.+||.. .++++.+|||||||||+|||+| +|+++
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 7999999875 8877 888876433211 146889999987 7889999999999999999999 99999
Q ss_pred Ee-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 408 RI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 408 lL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+| |+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99 899999999999988765577777544 4799999999999843
No 11
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.87 E-value=2.6e-23 Score=212.57 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=136.7
Q ss_pred EEEEEeEeecCC-ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------ccccce
Q 007511 281 LHFVSAVKNWGL-KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i 344 (601)
+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+
T Consensus 8 l~i~~ls~~y~~~~~~L~~i-sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 8 LKVEELNYNYSDGTHALKGI-NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEECTTSCEEEEEE-EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEECCCCeEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 567788899965 4599999 99999998655 999999999999999999999998551 134579
Q ss_pred eEeeecC---CCCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 345 SHLTEAP---VPGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 345 ~~v~qs~---~pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
++++|.+ ....| .+++.+..... . ..++++.+|+.. .++.+.+|||||||||+||++| +|++++
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl 166 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI 166 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999976 24455 77765532111 1 146789999987 7889999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHH-HhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDV-EESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~-~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++.+. .+ |.|++.+ ..+||++++|++|++.
T Consensus 167 LDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~~G~i~ 223 (275)
T 3gfo_A 167 LDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMKEGRVI 223 (275)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEETTEEE
T ss_pred EECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9 8999999999999887 44 7777743 3579999999999973
No 12
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.87 E-value=8.4e-23 Score=217.14 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=141.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------------cccccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------------GEEKNI 343 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------------~~~~~~ 343 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+ ...++.
T Consensus 4 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREM-SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEeEEEEECCEEEEeee-EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5677888999888899999 99999997655 99999999999999999999999854 122467
Q ss_pred eeEeeecCC--CCCc-eeeeeeecccc---c------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLP---A------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~---~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+++++|++. |++| .+++.+..... . ..++++.+||.. .++++.+|||||||||+|||+| +|++++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999875 8878 78877643211 1 146889999977 7889999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
| |+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9 889999999999988765577777544 4799999999999854
No 13
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.87 E-value=5.1e-23 Score=216.84 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=140.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc----------cccccceeEeee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD----------GEEKNIVSHLTE 349 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i----------~~~~~~i~~v~q 349 (601)
+.+.++.+.|+.. +++++ ++.+.+|+++. +|+||||||||||+|+|+.+|++|.+ ...++.+++++|
T Consensus 2 l~~~~l~~~y~~~-~l~~v-sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNL-SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEEEECSSC-EEEEE-EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEEEECCE-EEeee-EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 4566788889877 99999 99999997655 99999999999999999999999955 123467999999
Q ss_pred cCC--CCCc-eeeeeeeccc---c---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 350 APV--PGTT-LGIVRVEGVL---P---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 350 s~~--pgtT-~~~i~~~~~l---~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
++. |++| .+++.+.... . ...++++.+||.. .++++.+|||||||||+|||+| +|++++| |
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 875 8877 7887664221 1 1257899999987 7889999999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceecc
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~~ 452 (601)
+..+..+..+++.+..+.|.|+++++ .+||++++|++|++..
T Consensus 160 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 160 PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999988766577777544 4799999999999854
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.87 E-value=6.1e-23 Score=208.97 Aligned_cols=170 Identities=21% Similarity=0.216 Sum_probs=139.0
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEe
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHL 347 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v 347 (601)
+.+.+..+.|+...+++++ ++.+.+|+++. +|+||||||||+|+|+|+.+|++|.+. ..++.++++
T Consensus 12 l~~~~l~~~~~~~~vL~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDV-SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEEEeEEEEeCCeeEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 6678888999999999999 99999997655 999999999999999999999999651 234568999
Q ss_pred eecCC--CCCc-eeeeeeeccccc-------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--------CCCEEE
Q 007511 348 TEAPV--PGTT-LGIVRVEGVLPA-------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--------KPRTYR 408 (601)
Q Consensus 348 ~qs~~--pgtT-~~~i~~~~~l~~-------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--------~P~lll 408 (601)
+|.+. +.+| .+++.+...... ..++++.+|+.. .++.+.+|||||+|||+||++| +|++++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 99765 5556 777665322111 256788899977 7888999999999999999998 599999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++.+..+++.+++.+ ..+||++++|++|++.
T Consensus 171 lDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 171 LDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp ECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred EeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 8 88999999999998877756677633 3589999999999984
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.87 E-value=3.8e-23 Score=206.81 Aligned_cols=170 Identities=21% Similarity=0.253 Sum_probs=134.1
Q ss_pred EEEEeEeecCC----ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc----------------c
Q 007511 282 HFVSAVKNWGL----KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE----------------E 340 (601)
Q Consensus 282 ~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~----------------~ 340 (601)
.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. .
T Consensus 3 ~~~~l~~~y~~~~~~~~~L~~i-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 3 KLKNVTKTYKMGEEIIYALKNV-NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEETTEEEEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEeCCCCcceeeEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 34556666653 3589999 99999997655 9999999999999999999999996511 1
Q ss_pred ccceeEeeecCC--CCCc-eeeeeeeccc------cc------hhhhhccCCCcC--cCCccCCCCHHHHHHhcccccc-
Q 007511 341 KNIVSHLTEAPV--PGTT-LGIVRVEGVL------PA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 341 ~~~i~~v~qs~~--pgtT-~~~i~~~~~l------~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++.+++++|.+. |++| .+++.+.... .. ..++++.+|+.. .++++.+|||||+|||+||+||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~ 161 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALA 161 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 235999999876 6766 7776543211 11 146788899976 4889999999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+..+..+..+++.+..+.|.|++.++ .+||++++|++|++..
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 9999999 889999999999988765467777433 4799999999999843
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.87 E-value=8e-23 Score=202.98 Aligned_cols=169 Identities=21% Similarity=0.172 Sum_probs=137.1
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------c--------c-ccc
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------E--------E-KNI 343 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------~--------~-~~~ 343 (601)
+.+.++.+.|+...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. . . ++.
T Consensus 5 l~~~~l~~~y~~~~~l~~v-sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGI-SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEeEEEEECCEeeEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 5567888889888899999 99999998655 999999999999999999999998541 0 1 256
Q ss_pred eeEeeecCC--CCCc-eeeeeeecccc---------chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 344 VSHLTEAPV--PGTT-LGIVRVEGVLP---------AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 344 i~~v~qs~~--pgtT-~~~i~~~~~l~---------~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+++++|.+. +.+| .+++.+..... ...++++.+|+.. .++.+.+|||||+|||+||++| +|++++
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999875 6666 77765532111 1146889999977 7889999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+ |.+++.++ .+||++++|++|++.
T Consensus 164 LDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 164 ADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELAELTHRTLEMKDGKVV 218 (224)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 9 889999999999988766 67776332 579999999999874
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.86 E-value=9.6e-23 Score=206.53 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=137.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-------------ccccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-------------~~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+|+|+|+.+|++|.+. ..++.+++
T Consensus 8 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 8 LRTENIVKYFGEFKALDGV-SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEEEETTEEEEEEE-CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EEEeeeEEEECCEeeEeee-EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 5677888999888899999 99999997655 999999999999999999999998541 11346999
Q ss_pred eeecCC--CCCc-eeeeeeeccc----------------cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccc
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVL----------------PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINK 400 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l----------------~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iar 400 (601)
++|.+. +..| .+++.+.... .. ..++++.+|+.. .++.+.+|||||||||+||+
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 999875 5566 7776553211 11 146788899976 78899999999999999999
Q ss_pred cc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceec
Q 007511 401 EL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 401 aL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~ 451 (601)
+| +|++++| |+..+..+..+++....+ |.+++. +..+||++++|++|++.
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99 9999999 899999999999988766 677763 33589999999999873
No 18
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.86 E-value=8.3e-23 Score=207.57 Aligned_cols=169 Identities=19% Similarity=0.248 Sum_probs=138.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------cccccee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~ 345 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++
T Consensus 25 l~i~~l~~~y~~~~vL~~v-sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGI-NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 6677888899888899999 99999997655 999999999999999999999988551 1134699
Q ss_pred EeeecCC--CCCc-eeeeeeec-c---ccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 346 HLTEAPV--PGTT-LGIVRVEG-V---LPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 346 ~v~qs~~--pgtT-~~~i~~~~-~---l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
+++|.+. +.+| .+++.+.. . ... ..++++.+|+.. .++.+.+|||||+|||+||++| +|++++|
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999875 6666 77776521 1 111 146789999976 7889999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+.++++....+ |.+++.+ ..+||++++|++|++.
T Consensus 184 DEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 238 (263)
T 2olj_A 184 DEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYII 238 (263)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988766 7777733 3479999999999984
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=8.1e-23 Score=206.88 Aligned_cols=171 Identities=16% Similarity=0.249 Sum_probs=139.5
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccccceeE
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEKNIVSH 346 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~~~i~~ 346 (601)
..+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.+++
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~v-sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGI-SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEee-EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 347778888999888899999 99999997655 999999999999999999999999651 12457999
Q ss_pred eeecCC--CCCc-eeeeeeeccc---cc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 347 LTEAPV--PGTT-LGIVRVEGVL---PA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~l---~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
++|.+. +++| .+++.+.... .. ..++++.+|+.. .++.+..|||||+|||+||++| +|++++|
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 172 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE 172 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999875 6666 7777553211 11 146788889976 6888999999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++.++ .+||++++|++|++.
T Consensus 173 Pts~LD~~~~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 173 PTSGLDVLNAREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEETTEEE
T ss_pred CccccCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEECCEEE
Confidence 889999999999988655 67777443 469999999999974
No 20
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.86 E-value=2.3e-22 Score=203.34 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=137.4
Q ss_pred EEEEEeEeecC-CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc
Q 007511 281 LHFVSAVKNWG-LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT 356 (601)
Q Consensus 281 V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT 356 (601)
+.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+. .++.++|++|.+. +..|
T Consensus 5 l~i~~l~~~y~~~~~vl~~i-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~~~i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQL-NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-VYQSIGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEE-EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSCCCCSSCCB
T ss_pred EEEeeEEEEeCCCCeEEEEE-EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EeccEEEEcCCCccCCCCC
Confidence 55677888888 77899999 99999997655 999999999999999999999999876 4567999999875 5666
Q ss_pred -eeeeeeeccc--------cc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 357 -LGIVRVEGVL--------PA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 357 -~~~i~~~~~l--------~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.+++.+.... .. ..++++.+|+.. .++.+..|||||+|||+||++| +|++++| |+.
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~ 162 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHH
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 7777653210 11 146788899977 7888999999999999999999 9999999 889
Q ss_pred hHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecce
Q 007511 413 HSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 413 ~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gk 449 (601)
.+..+..+++....+.|.+++.++ .+||++++|++|+
T Consensus 163 ~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 999999999988665466777433 4789999999998
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.86 E-value=1.2e-22 Score=206.42 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=137.7
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------------------
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------------- 338 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------------- 338 (601)
+.+.++.+.||...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+.
T Consensus 7 l~i~~l~~~y~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGV-SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEeeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 6677888899888899999 99999997655 999999999999999999999988541
Q ss_pred ----ccccceeEeeecCC--CCCc-eeeeeeec-cc---cc------hhhhhccCCCcC--cCCccCCCCHHHHHHhccc
Q 007511 339 ----EEKNIVSHLTEAPV--PGTT-LGIVRVEG-VL---PA------QAKLFDTPGLLH--PNQITTRLTREEQKLVNIN 399 (601)
Q Consensus 339 ----~~~~~i~~v~qs~~--pgtT-~~~i~~~~-~l---~~------~~~llDtpGL~~--~~~~~~~LSgGe~qrv~ia 399 (601)
..++.+++++|.+. +.+| .+++.+.. .. .. ..++++.+|+.. .++.+.+|||||+|||+||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 11346999999865 6666 77776521 11 11 146889999975 5889999999999999999
Q ss_pred ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 400 KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 400 raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++| +|++++| |+..+..+.++++....+ |.+++.+ ..+||++++|++|++.
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999 9999999 899999999999988766 6777743 3479999999999984
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=2.5e-22 Score=201.45 Aligned_cols=169 Identities=23% Similarity=0.232 Sum_probs=135.6
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------c-cccceeE
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------E-EKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~-~~~~i~~ 346 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. . .++.++|
T Consensus 7 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 7 LEVQSLHVYYGAIHAIKGI-DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEEEeEEEEECCeeEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 5677888899888899999 99999997655 999999999999999999999998551 0 1345999
Q ss_pred eeecCC--CCCc-eeeeeeecc--cc-c-----hhhhhccC-CCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe--
Q 007511 347 LTEAPV--PGTT-LGIVRVEGV--LP-A-----QAKLFDTP-GLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-- 409 (601)
Q Consensus 347 v~qs~~--pgtT-~~~i~~~~~--l~-~-----~~~llDtp-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-- 409 (601)
++|.+. +++| .+++.+... .. . ..++++.+ |+.. .++.+.+|||||+||++||++| +|++++|
T Consensus 86 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999875 6666 777765321 11 1 13567777 4865 6888999999999999999999 9999999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++.++ .+||++++|++|++.
T Consensus 166 Pts~LD~~~~~~l~~~l~~~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 218 (240)
T 1ji0_A 166 PSLGLAPILVSEVFEVIQKINQE-GTTILLVEQNALGALKVAHYGYVLETGQIV 218 (240)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999988654 66776433 479999999999974
No 23
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.85 E-value=2.8e-22 Score=201.10 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=132.7
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeec
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEA 350 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs 350 (601)
.+.++.+.|+. +++++ ++.+.+ +++ ++|+||||||||+++|+|+.+|++|.+. ..++.+++++|.
T Consensus 3 ~~~~l~~~y~~--~l~~i-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 3 LKVRAEKRLGN--FRLNV-DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEEEEEEEETT--EEEEE-EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEeCC--EEeee-EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 34566777764 48999 888888 765 4999999999999999999999998551 234569999998
Q ss_pred CC--CCCc-eeeeeeeccccc-------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------c
Q 007511 351 PV--PGTT-LGIVRVEGVLPA-------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------K 410 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l~~-------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D 410 (601)
+. +++| .+++.+.....+ ..++++.+|+.. .++.+.+|||||+||+++|++| +|++++| |
T Consensus 79 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD 158 (240)
T 2onk_A 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred CccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 75 6666 777765432211 246889999976 7888999999999999999999 9999999 8
Q ss_pred cchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecceec
Q 007511 411 AGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGKTE 451 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gki~ 451 (601)
+..+..+..+++....+.|.+++.++ .+||++++|++|++.
T Consensus 159 ~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~ 206 (240)
T 2onk_A 159 LKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999988655466776433 479999999999974
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.84 E-value=1.4e-21 Score=198.96 Aligned_cols=169 Identities=18% Similarity=0.201 Sum_probs=135.7
Q ss_pred EEEEEeEeecC--C---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------cccccee
Q 007511 281 LHFVSAVKNWG--L---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G--~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------~~~~~i~ 345 (601)
+.+.++.+.|+ . ..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENV-SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEecCCCccccceeeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 44567777886 4 4689999 99999997655 999999999999999999999999652 2356799
Q ss_pred EeeecC---CCCCc-eeeeeeeccc--cc------hhhhhccCCCc--C-cCCccCCCCHHHHHHhcccccc--CCCEEE
Q 007511 346 HLTEAP---VPGTT-LGIVRVEGVL--PA------QAKLFDTPGLL--H-PNQITTRLTREEQKLVNINKEL--KPRTYR 408 (601)
Q Consensus 346 ~v~qs~---~pgtT-~~~i~~~~~l--~~------~~~llDtpGL~--~-~~~~~~~LSgGe~qrv~iaraL--~P~lll 408 (601)
+++|.+ .+..| .+++.+.... .. ..++++.+|+. . .++.+..|||||+|||+||++| +|++++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 161 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999985 25556 7777653211 11 24688999998 6 7888999999999999999999 999999
Q ss_pred e-------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 409 I-------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 409 L-------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
| |+..+..+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 162 LDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~ 217 (266)
T 2yz2_A 162 LDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKV 217 (266)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEE
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9 899999999999988766 6777633 3479999999999873
No 25
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=1.4e-21 Score=200.15 Aligned_cols=169 Identities=18% Similarity=0.258 Sum_probs=135.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc--------------cccccee
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG--------------EEKNIVS 345 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~--------------~~~~~i~ 345 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+|+|+|+.+|++|.+. ..++.++
T Consensus 22 l~~~~l~~~y~~~~vL~~i-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 22 IQLDQIGRMKQGKTILKKI-SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEEEeEEEEECCEEEEEee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 5677888999888899999 99999997655 999999999999999999999988541 1245699
Q ss_pred EeeecCC----CCCc-eeeeeeecc--------ccc-----hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 346 HLTEAPV----PGTT-LGIVRVEGV--------LPA-----QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 346 ~v~qs~~----pgtT-~~~i~~~~~--------l~~-----~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++|.+. +.+| .+++.+... ... ..++++.+|+.. .++.+.+|||||+|||+||++| +|
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 9999752 2335 777654210 011 146788899976 7889999999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceE--EE-------EEEeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVES--IY-------VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~ti--i~-------~~~~ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++....+ |.++ +. +..+||++++|++|++.
T Consensus 181 ~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~ 242 (279)
T 2ihy_A 181 QVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242 (279)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETTEEE
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999 889999999999988766 6666 63 34579999999999974
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.83 E-value=4.2e-21 Score=195.93 Aligned_cols=171 Identities=18% Similarity=0.201 Sum_probs=132.0
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~ 343 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|+++|++|.+. ..++.
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGL-TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred eEEEEEEEEEeCCCCCceeeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3677888888976 6799999 99999997655 999999999999999999999998651 12456
Q ss_pred eeEeeecCC--CCCceeeeeeeccc-cc------------hhhhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--C
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVL-PA------------QAKLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--K 403 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l-~~------------~~~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~ 403 (601)
++|++|.+. +.|..+++.+.... .. ..++++.+ |+.. .++.+..|||||+|||+|||+| +
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999875 54337777653211 11 02345555 6655 6778999999999999999999 9
Q ss_pred CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 404 PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 404 P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
|++++| |+..+..+..+++....+.+.+++.++ ..||++++|++|++.
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999 888999999999876544366776332 248999999999974
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.82 E-value=1.6e-20 Score=189.08 Aligned_cols=170 Identities=16% Similarity=0.162 Sum_probs=129.9
Q ss_pred ceEEEEEeEeec--CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccc
Q 007511 279 TKLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNI 343 (601)
Q Consensus 279 ~~V~lvSa~kg~--G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~ 343 (601)
-++.+.++.+.| +...+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+. ..++.
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNI-NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 367888999999 456799999 99999997655 999999999999999999999998551 12456
Q ss_pred eeEeeecCC--CCCceeeeeeeccccc---hhhhhccCCCc-----------C-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLL-----------H-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~-----------~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|.+. +.|..+++.+...... ..++++..|+. . .++.+..|||||+|||+||++| +|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999875 4433777765321111 12334444443 2 3455789999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++... + +.+++.++ ..||++++|++|++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~~d~v~~l~~G~i~ 222 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKNADRIIVMEKGKIV 222 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTTSSEEEEEETTEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 99999 8899999999998873 4 66776332 358999999999984
No 28
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.82 E-value=3.6e-21 Score=189.64 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=124.3
Q ss_pred ceEEEEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-------ccccceeEeeec
Q 007511 279 TKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-------EEKNIVSHLTEA 350 (601)
Q Consensus 279 ~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~~~~~i~~v~qs 350 (601)
..+.+.++.+.|+. .+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+. ..++.++|++|.
T Consensus 9 ~~l~~~~ls~~y~~-~il~~v-sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERI-TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEE-EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCC-eEEeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 35778888899988 899999 9999998755 5999999999999999999999999652 235679999998
Q ss_pred CC--CCCc-eeeeeeeccc-----c--chhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 351 PV--PGTT-LGIVRVEGVL-----P--AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~~l-----~--~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
+. +++| .+++.+.... . ...++++.+|+...++.+..|||||+||+++|++| +|++++| |+
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 75 6666 7776553211 1 12467888898644778999999999999999999 9999999 89
Q ss_pred chHHHHHHHHHHHHHhcCceEEEEE
Q 007511 412 GHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 412 ~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
..+..+..+++....+ +.+++.++
T Consensus 167 ~~~~~l~~~l~~~~~~-g~tiiivt 190 (214)
T 1sgw_A 167 DSKHKVLKSILEILKE-KGIVIISS 190 (214)
T ss_dssp TTHHHHHHHHHHHHHH-HSEEEEEE
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEe
Confidence 9999999999987655 56666443
No 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.82 E-value=1.1e-20 Score=189.92 Aligned_cols=168 Identities=10% Similarity=0.149 Sum_probs=127.9
Q ss_pred EEEEEeEeec-CCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeE
Q 007511 281 LHFVSAVKNW-GLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSH 346 (601)
Q Consensus 281 V~lvSa~kg~-G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~ 346 (601)
+.+.++.+.| +...+++++ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+. ..++.+++
T Consensus 2 l~~~~l~~~y~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDI-SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEE-EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCCCceEEEe-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 3456777888 567799999 9999999765 4999999999999999999999999651 23457999
Q ss_pred eeecCC--CCCceeeeeeecc--ccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 347 LTEAPV--PGTTLGIVRVEGV--LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 347 v~qs~~--pgtT~~~i~~~~~--l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
++|.+. +.|..+++.+... ... ..++++..|+.. .++.+..|||||+||++||++| +|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999875 4433777765311 111 134455555543 2345679999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+..+..+..+++... + +.+++.++ ..||++++|++|++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 999 8888999999998875 4 66776333 358999999999974
No 30
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.3e-20 Score=201.37 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=133.0
Q ss_pred ceEEEEEeEeec--CCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 279 TKLHFVSAVKNW--GLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 279 ~~V~lvSa~kg~--G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
..+.+.++.+.| +...+++++ ++.+.+|+++. +|+|||||||||++|+|+.+ ++|.+ ...++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~v-sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENI-SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecCCCeEEeece-eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 357888999999 667899999 99999997655 99999999999999999987 77744 123567
Q ss_pred eeEeeecCC--CCCceeeeeeeccccc--hhhhhccCCCcC-cCCccCC-----------CCHHHHHHhcccccc--CCC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPA--QAKLFDTPGLLH-PNQITTR-----------LTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~--~~~llDtpGL~~-~~~~~~~-----------LSgGe~qrv~iaraL--~P~ 405 (601)
+++++|++. +.|..+++.+...... ..++++..|+.. .++++.. |||||||||+||||| +|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 999999986 5333777653221111 256788889876 6677777 999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecch
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTENA 453 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~a 453 (601)
+++| |+..+..+..+++... . +.+++.++ .+||++++|++|++...
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~~-~-~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQAF-A-DCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTTT-T-TSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 9999 7788888888887643 2 55666332 36999999999998543
No 31
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=6.2e-21 Score=192.28 Aligned_cols=163 Identities=13% Similarity=0.107 Sum_probs=129.2
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccceeEee
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNIVSHLT 348 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~i~~v~ 348 (601)
.+.++.+. .+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|+ |.+. ..++.++|++
T Consensus 6 ~~~~l~~~----~vl~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 6 QLQDVAES----TRLGPL-SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEEEET----TTEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EEEceEEE----EEEeee-EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC
Confidence 34444444 689999 99999997654 9999999999999999999999 9651 1235699999
Q ss_pred ecCC--CCCc-eeeeeeeccc--c--chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC-------EEEe--
Q 007511 349 EAPV--PGTT-LGIVRVEGVL--P--AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR-------TYRI-- 409 (601)
Q Consensus 349 qs~~--pgtT-~~~i~~~~~l--~--~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~-------lllL-- 409 (601)
|.+. +++| .+++.+.... . ...++++.+|+.. .++.+..|||||+||++||++| +|+ +++|
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 9875 5666 7776653111 1 1256888999976 7888999999999999999999 999 9999
Q ss_pred -----ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 410 -----KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 410 -----D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
|+..+..+..+++....+ |.+++.+ ..+||++++|++|++.
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 212 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 889999999999988766 6677633 3579999999999874
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.81 E-value=2.3e-21 Score=195.63 Aligned_cols=169 Identities=18% Similarity=0.163 Sum_probs=127.9
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcc--ccCCCCCccc-------------cccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGE-------------EKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~--~~~~~G~i~~-------------~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+++|+|+ .+|++|.+.. .+..+
T Consensus 4 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGV-NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEEEeEEEEECCEEEEece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 4567788888888899999 99999997655 999999999999999998 7788885410 12347
Q ss_pred eEeeecCC--CCCc-eeeeeeecc------cc------chhhhhccCCCc-C-cCCccCC-CCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEGV------LP------AQAKLFDTPGLL-H-PNQITTR-LTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~~------l~------~~~~llDtpGL~-~-~~~~~~~-LSgGe~qrv~iaraL--~P 404 (601)
++++|.+. +++| .+++.+... .. ...++++.+|+. . .++.+.. |||||+|||+||++| +|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 89999875 6677 666544210 00 114578888994 4 6788888 999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------Ee-ecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VW-ASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~-ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++....+ |.+++.++ .+ ||++++|++|++.
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGP-NFGALVITHYQRILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCST-TCEEEEECSSSGGGGTSCCSEEEEEETTEEE
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCCEEEEEECCEEE
Confidence 99999 888999999999887544 66776433 35 5999999999974
No 33
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.81 E-value=2.3e-20 Score=193.43 Aligned_cols=169 Identities=18% Similarity=0.220 Sum_probs=128.6
Q ss_pred eEEEEEeEeecC-CccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWG-LKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G-~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.|.+.++.+.|+ ...+++++ ++.+.+|++ ++||+||||||||+++|+|++.|++|.+ ...++.++
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~i-sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDV-SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEE-EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred eEEEEEEEEEcCCCCceeeee-eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 477888888994 56799999 999999975 5599999999999999999999999955 13456799
Q ss_pred EeeecCC--CCCceeeeeeeccccch---hhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+++|.+. ++|..+++.+....... ...++.. |+.. .++....|||||+|||+||||| +|++
T Consensus 132 ~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 132 VVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp EECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999986 44337887654221111 1222222 4433 4556788999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+.....+..+++.... +.|++.++ ..||++++|++|++.
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~aD~i~vl~~G~iv 267 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVNADQILVIKDGCIV 267 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHTCSEEEEEETTEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 999 78888899999887653 45666333 259999999999984
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.80 E-value=2e-20 Score=190.52 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=130.3
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcc--ccCCCCCccc-------------cccce
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKS--VDAGRGGDGE-------------EKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~--~~~~~G~i~~-------------~~~~i 344 (601)
+.+.++.+.|+...+++++ ++.+.+|++++ +|+||||||||+|+|+|+ .+|++|.+.. .+..+
T Consensus 21 l~~~~l~~~y~~~~vl~~v-sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 21 LSIKDLHVSVEDKAILRGL-SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEEEETTEEEEEEE-EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEEEeEEEEECCEEEEEee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 6677888899888899999 99999997655 999999999999999999 4677885410 12348
Q ss_pred eEeeecCC--CCCc-eeeeeeec-------c---cc------chhhhhccCCCc-C-cCCccC-CCCHHHHHHhcccccc
Q 007511 345 SHLTEAPV--PGTT-LGIVRVEG-------V---LP------AQAKLFDTPGLL-H-PNQITT-RLTREEQKLVNINKEL 402 (601)
Q Consensus 345 ~~v~qs~~--pgtT-~~~i~~~~-------~---l~------~~~~llDtpGL~-~-~~~~~~-~LSgGe~qrv~iaraL 402 (601)
++++|.+. +++| .+++.+.. . .. ...++++.+|+. . .++.+. .|||||+|||+||++|
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 99999875 6666 55543211 0 01 114678889996 3 577776 5999999999999999
Q ss_pred --CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE-------e-ecCEEEeecceec
Q 007511 403 --KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV-------W-ASPYLPLHMGKTE 451 (601)
Q Consensus 403 --~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~-------~-ad~vl~l~~Gki~ 451 (601)
+|++++| |+..+..+..+++....+ |.+++.++. + ||++++|++|++.
T Consensus 180 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 180 VLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 9999999 888999999999876544 667774432 3 8999999999874
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=3.1e-20 Score=185.84 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=123.7
Q ss_pred EEEEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC-CCCc
Q 007511 281 LHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV-PGTT 356 (601)
Q Consensus 281 V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~-pgtT 356 (601)
+.+.++.+.|+ ...+++++ ++.+.+|++++ +|+||||||||+++|+|+++|++|.+... ..+++++|.+. +..|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~-g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGI-TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK-GSVAYVPQQAWIQNDS 81 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC-SCEEEECSSCCCCSEE
T ss_pred EEEEEEEEEeCCCCCceeeee-EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC-CEEEEEcCCCcCCCcC
Confidence 56677888887 46799999 99999997655 99999999999999999999999976432 35899999876 5555
Q ss_pred -eeeeeeeccccc--hhhhhccCCCc------C------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc
Q 007511 357 -LGIVRVEGVLPA--QAKLFDTPGLL------H------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG 412 (601)
Q Consensus 357 -~~~i~~~~~l~~--~~~llDtpGL~------~------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~ 412 (601)
.+++.+...... ...+++..++. . .++.+..|||||+||++||++| +|++++| |+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 677655322111 12222222221 1 3567889999999999999999 9999999 777
Q ss_pred hHHHHHHHHHH--HHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 413 HSIHIAGLMRM--DVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 413 ~~~~l~~lir~--~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
.+..+..++.. ...+ +.+++.++ .+||++++|++|++.
T Consensus 162 ~~~~i~~~l~~~~~~~~-~~tviivtH~~~~~~~~d~v~~l~~G~i~ 207 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLK-NKTRILVTHSMSYLPQVDVIIVMSGGKIS 207 (237)
T ss_dssp HHHHHHHHTTSTTSTTT-TSEEEEECSCSTTGGGSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhcC-CCEEEEEecChHHHHhCCEEEEEeCCEEE
Confidence 78888877741 1123 56666332 368999999999974
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.78 E-value=4.4e-20 Score=187.50 Aligned_cols=163 Identities=20% Similarity=0.179 Sum_probs=126.7
Q ss_pred EEEEeEeecCC----ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc---------cccccee-E
Q 007511 282 HFVSAVKNWGL----KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVS-H 346 (601)
Q Consensus 282 ~lvSa~kg~G~----~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~---------~~~~~i~-~ 346 (601)
.+.++.+.|+. ..+++++ ++.+. |+++ ++|+||||||||+++|+|+. |++|.+. ..++.++ +
T Consensus 3 ~~~~l~~~y~~~~~~~~il~~v-sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 3 QLKNVGITLSGKGYERFSLENI-NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEETTEEEEEEEE-EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEeCCCCccceeEEee-eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 45566677765 6799999 99999 8755 59999999999999999999 9999652 1145789 9
Q ss_pred eeecCCCCCc-eeeeeeeccc---c--chhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------
Q 007511 347 LTEAPVPGTT-LGIVRVEGVL---P--AQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI------- 409 (601)
Q Consensus 347 v~qs~~pgtT-~~~i~~~~~l---~--~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL------- 409 (601)
++|.+....| .+++.+...+ . ...++++.+|+. . .++.+.+|||||+||+++|++| +|++++|
T Consensus 80 v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 80 LPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp CGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred eCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9998653445 6776543211 1 125688889997 6 7888999999999999999999 9999999
Q ss_pred ccchHHHHHHHHHHHHHhcCceEEEE-------EEeec-CEEEeecceec
Q 007511 410 KAGHSIHIAGLMRMDVEESSVESIYV-------TVWAS-PYLPLHMGKTE 451 (601)
Q Consensus 410 D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad-~vl~l~~Gki~ 451 (601)
|+..+..+..+++.... +++.+ ..+|| ++++|++|++.
T Consensus 160 D~~~~~~l~~~L~~~~~----tviivtHd~~~~~~~~d~~i~~l~~G~i~ 205 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK----EGILVTHELDMLNLYKEYKAYFLVGNRLQ 205 (263)
T ss_dssp CHHHHHHHHHHHHHSCS----EEEEEESCGGGGGGCTTSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcC----cEEEEEcCHHHHHHhcCceEEEEECCEEE
Confidence 78888888888876532 56533 35789 99999999874
No 37
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.77 E-value=1.1e-19 Score=180.84 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=122.4
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CC
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PG 354 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pg 354 (601)
.+.+.++.+.|+ ...+++++ ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+... ..++|++|.+. ++
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~-g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-GRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEE-EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC-SCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCCCCceeeeee-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC-CEEEEEecCCcccCC
Confidence 366778888884 46799999 99999997655 99999999999999999999999976432 36899999876 55
Q ss_pred Cceeeeeeeccccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------cc
Q 007511 355 TTLGIVRVEGVLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KA 411 (601)
Q Consensus 355 tT~~~i~~~~~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~ 411 (601)
|..+++.+...... ...+++..++.. .++....|||||+||+++|++| +|++++| |+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 33777765321111 122333333321 2234579999999999999999 9999999 77
Q ss_pred chHHHHHHHH-HHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 412 GHSIHIAGLM-RMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 412 ~~~~~l~~li-r~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
.....+..++ +... + +.+++.++ ..||++++|++|++.
T Consensus 164 ~~~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 164 LTEKEIFESCVCKLM-A-NKTRILVTSKMEHLKKADKILILHEGSSY 208 (229)
T ss_dssp HHHHHHHHHCCCCCT-T-TSEEEEECCCHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhh-C-CCEEEEEcCChHHHHhCCEEEEEECCEEE
Confidence 7777777753 3322 3 56666333 258999999999874
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.77 E-value=3e-19 Score=181.14 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=125.8
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc------------ccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG------------EEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~------------~~~~~ 343 (601)
.+.+.++.+.|+. ..+++++ ++.+.+|++++ +|+||||||||+++|+|++++ .|.+. ..++.
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~v-sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSI-NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEE-EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred eEEEEEEEEEeCCCCcCceeEee-EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 3677888888875 3589999 99999997655 999999999999999999986 67541 12457
Q ss_pred eeEeeecCC-CCCc-eeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV-PGTT-LGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~-pgtT-~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++|++|.+. ...| .+++.+...... ..++++..|+.. .++.+..|||||+|||+||++| +|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 999999876 2235 777655311111 123444555432 2356789999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+..+..+..+++... + +.+++.++ ..||++++|++|++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~~~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTISSAESIILLNKGKIV 232 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGSTTCSEEEEEETTEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 99999 8888999999998774 3 56666332 358999999999974
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.75 E-value=2e-18 Score=194.23 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=130.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++.+.|+. ..+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i-~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHV-SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred eEEEEEEEEEcCCCCccccccc-eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 4778888899974 5799999 9999999755 599999999999999999999999955 1235679
Q ss_pred eEeeecCC--CCCceeeeeeec--cccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEG--VLPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~--~l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++++|.+. ++|..+|+.+.. .... ..++++..|+.+ .+.....|||||+||+++||+| +|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 420 ALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999986 554488887642 1111 134555555532 2334578999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+.+.++... + |.|++.++ ..||++++|++|++.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 500 PVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIEQADEILVVDEGEII 557 (582)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHhCCEEEEEECCEEE
Confidence 99999 7888888998888764 3 56666333 369999999999984
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.74 E-value=1.8e-18 Score=194.86 Aligned_cols=169 Identities=19% Similarity=0.277 Sum_probs=129.7
Q ss_pred eEEEEEeEeecC--CccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWG--LKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G--~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+ ...+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGV-NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred cEEEEEEEEEcCCCCCcceece-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 588889999984 46799999 9999999755 599999999999999999999999955 1235679
Q ss_pred eEeeecCC--CCCceeeeeeeccccch---h---------hhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQ---A---------KLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~---~---------~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|++. ++|..+|+.+....... . +.++.+ |+.. .++....||||||||++||||| +|+
T Consensus 420 ~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 420 SAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 99999987 55448887653221111 1 122222 4443 4566789999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+++| |+.....+.+.++... + +.|++.++ ..||++++|++|++.
T Consensus 500 illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~~~~~d~i~vl~~G~i~ 556 (587)
T 3qf4_A 500 VLILDDCTSSVDPITEKRILDGLKRYT-K-GCTTFIITQKIPTALLADKILVLHEGKVA 556 (587)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHS-T-TCEEEEEESCHHHHTTSSEEEEEETTEEE
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhC-C-CCEEEEEecChHHHHhCCEEEEEECCEEE
Confidence 9999 7888888888888753 3 66776443 379999999999984
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.73 E-value=2.9e-18 Score=193.02 Aligned_cols=169 Identities=13% Similarity=0.121 Sum_probs=130.6
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v-~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNI-NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEE-EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred cEEEEEEEEEcCCCCCccccce-eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 4788899999974 6799999 9999999755 599999999999999999999999854 1234579
Q ss_pred eEeeecCC--CCCceeeeeeec-c-ccc--hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEG-V-LPA--QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~-~-l~~--~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
++++|.+. ++|..+++.+.. . ... ..++++..|+.+ .++....|||||+||+++||++ +|
T Consensus 420 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 420 ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999986 554488887632 1 111 134555555532 2345678999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+.+.++... + +.|++.++ ..||++++|++|++.
T Consensus 500 ~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 557 (582)
T 3b60_A 500 PILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIEQADEIVVVEDGIIV 557 (582)
T ss_dssp SEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTTTCSEEEEEETTEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999 8888889999988765 3 56666332 368999999999984
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.73 E-value=3.3e-18 Score=193.12 Aligned_cols=169 Identities=16% Similarity=0.214 Sum_probs=129.1
Q ss_pred eEEEEEeEeecCC-ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------ccccccee
Q 007511 280 KLHFVSAVKNWGL-KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIVS 345 (601)
Q Consensus 280 ~V~lvSa~kg~G~-~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i~ 345 (601)
.+.+.++...|+. ..+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.++
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDI-TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSE-EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred eEEEEEEEEECCCCCccccce-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 5888899999964 5699999 9999999755 499999999999999999999999955 12356799
Q ss_pred EeeecCC--CCCceeeeeeeccccc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCE
Q 007511 346 HLTEAPV--PGTTLGIVRVEGVLPA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRT 406 (601)
Q Consensus 346 ~v~qs~~--pgtT~~~i~~~~~l~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~l 406 (601)
+++|++. ++|..+|+.+...... ..+.++..++.. .+.....||||||||++||||+ +|++
T Consensus 433 ~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 433 IVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp EECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999987 5544888765321111 133444444432 1223368999999999999999 9999
Q ss_pred EEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 407 YRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 407 llL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++| |+.....+...++... + +.|++.++ ..||++++|++|++.
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 568 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLM-E-GKTSIIIAHRLNTIKNADLIIVLRDGEIV 568 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHH-T-TSEEEEESCCTTHHHHCSEEEEECSSSEE
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 999 7888888888888764 3 66776433 359999999999974
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.72 E-value=3.6e-18 Score=192.04 Aligned_cols=169 Identities=14% Similarity=0.218 Sum_probs=127.9
Q ss_pred eEEEEEeEeecCC--ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 280 KLHFVSAVKNWGL--KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 280 ~V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
.+.+.++...|+. ..+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDI-NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEE-EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred eEEEEEEEEEcCCCCCcceeee-EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5788888899864 4689999 9999999755 599999999999999999999999955 1235679
Q ss_pred eEeeecCC--CCCceeeeeeeccccch---hhhhccC-----------CCcC-cCCccCCCCHHHHHHhcccccc--CCC
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTP-----------GLLH-PNQITTRLTREEQKLVNINKEL--KPR 405 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtp-----------GL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ 405 (601)
++++|++. ++|..+|+.+....... .+.++.. |+.. .+.....||||||||+++|||| +|+
T Consensus 418 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 418 GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999987 55448887653221111 2222223 3332 3445678999999999999999 999
Q ss_pred EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 406 TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 406 lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+++| |+.....+...++.... +.|++.++ ..||++++|++|++.
T Consensus 498 illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l~~~~~~d~i~~l~~G~i~ 554 (578)
T 4a82_A 498 ILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTITHADKIVVIENGHIV 554 (578)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGTTTCSEEEEEETTEEE
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9999 77788888888876643 45666332 368999999999984
No 44
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.72 E-value=3.6e-18 Score=192.71 Aligned_cols=168 Identities=14% Similarity=0.194 Sum_probs=129.5
Q ss_pred EEEEEeEeecCC---ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc------------cccccce
Q 007511 281 LHFVSAVKNWGL---KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNIV 344 (601)
Q Consensus 281 V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~i 344 (601)
+.+.++.+.|+. ..+++++ ++.+++|+++ ++|+||||||||+++|+|+++|++|.+ ...++.+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~i-sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDF-SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEE-EEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEEEeCCCCCCccccce-EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 888899999974 3599999 9999999755 599999999999999999999999854 1234579
Q ss_pred eEeeecCC--CCCceeeeeeeccc---cc---hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--
Q 007511 345 SHLTEAPV--PGTTLGIVRVEGVL---PA---QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 345 ~~v~qs~~--pgtT~~~i~~~~~l---~~---~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
++++|.+. ++|..+|+.+.... .. ..++++..|+.+ .+.....|||||+||+++||+|
T Consensus 421 ~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~ 500 (595)
T 2yl4_A 421 GTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLK 500 (595)
T ss_dssp EEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHH
T ss_pred EEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHc
Confidence 99999986 55448888664221 11 134555555532 2233588999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+|++++| |+.....+.+.++.... +.|++.++ ..||++++|++|++.
T Consensus 501 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 501 NPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9999999 78888899999987654 45666433 358999999999984
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.72 E-value=5.1e-18 Score=188.71 Aligned_cols=164 Identities=15% Similarity=0.155 Sum_probs=126.1
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC--CCc-ee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP--GTT-LG 358 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p--gtT-~~ 358 (601)
+.+..+.|+.. .+... ++.+.+|+++. +|+||||||||+++|+|+.+|++|.+......+++++|...+ ..| .+
T Consensus 272 ~~~l~~~~~~~-~l~~~-~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~ 349 (538)
T 3ozx_A 272 WTKIIKKLGDF-QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ 349 (538)
T ss_dssp ECCEEEEETTE-EEEEC-CEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHH
T ss_pred EcceEEEECCE-EEEec-cceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHH
Confidence 33455666543 23333 56677887655 999999999999999999999999887777789999998763 344 44
Q ss_pred eeeeecc-c--c---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHH
Q 007511 359 IVRVEGV-L--P---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMR 422 (601)
Q Consensus 359 ~i~~~~~-l--~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir 422 (601)
++..... . . ...++++.+|+.. .++.+..|||||||||+||++| +|++++| |+..+..+..+++
T Consensus 350 ~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~ 429 (538)
T 3ozx_A 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429 (538)
T ss_dssp HHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 4432110 0 0 1256788899977 7889999999999999999999 9999999 8899999999999
Q ss_pred HHHHhcCceEEE-------EEEeecCEEEeecc
Q 007511 423 MDVEESSVESIY-------VTVWASPYLPLHMG 448 (601)
Q Consensus 423 ~~~~~~g~tii~-------~~~~ad~vl~l~~G 448 (601)
.+..+.|.+++. +..+||++++|+.+
T Consensus 430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 430 RVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 887765777763 34589999999864
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.69 E-value=1.1e-17 Score=188.44 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=124.1
Q ss_pred EEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-e
Q 007511 282 HFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT-L 357 (601)
Q Consensus 282 ~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT-~ 357 (601)
.+.++.+.|+.. .++.+ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+.. ...++|++|.+. +..| .
T Consensus 359 ~~~~l~~~~~~~-~l~~~-~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~i~~v~Q~~~~~~~~tv~ 435 (607)
T 3bk7_A 359 EYPRLVKDYGSF-KLEVE-PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAEYEGTVY 435 (607)
T ss_dssp EECCEEEECSSC-EEEEC-CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCCEEEECSSCCCCCSSBHH
T ss_pred EEeceEEEecce-EEEec-ccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeEEEEEecCccCCCCCcHH
Confidence 344566677643 45555 66677887655 9999999999999999999999998754 467999999875 4555 4
Q ss_pred eeeeee-c-ccc---chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHH
Q 007511 358 GIVRVE-G-VLP---AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMR 422 (601)
Q Consensus 358 ~~i~~~-~-~l~---~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir 422 (601)
+++... . ... ...++++.+|+.. .++.+.+|||||||||+||++| +|++|+| |+..+..+..+++
T Consensus 436 e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 515 (607)
T 3bk7_A 436 ELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515 (607)
T ss_dssp HHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 443221 0 000 1246788889876 7888999999999999999999 9999999 8999999999999
Q ss_pred HHHHhcCceEEEE-------EEeecCEEEeec
Q 007511 423 MDVEESSVESIYV-------TVWASPYLPLHM 447 (601)
Q Consensus 423 ~~~~~~g~tii~~-------~~~ad~vl~l~~ 447 (601)
.+..+.|.+++.+ ..+||++++|+.
T Consensus 516 ~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 516 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 8875546677633 357999999984
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=4.3e-18 Score=175.22 Aligned_cols=154 Identities=18% Similarity=0.209 Sum_probs=110.5
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCceeeeeeeccccc-
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLGIVRVEGVLPA- 368 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~~i~~~~~l~~- 368 (601)
..+++++ ++.+.+|++++ +|+||||||||+++|+|+.+|++|.+... ..++|++|.+. ++|..+++. ......
T Consensus 51 ~~vl~~i-sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~ 127 (290)
T 2bbs_A 51 TPVLKDI-NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS-GRISFCSQNSWIMPGTIKENII-GVSYDEY 127 (290)
T ss_dssp CCSEEEE-EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC-SCEEEECSSCCCCSSBHHHHHH-TTCCCHH
T ss_pred ceEEEee-EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-CEEEEEeCCCccCcccHHHHhh-CcccchH
Confidence 5689999 99999997655 99999999999999999999999976432 36899999876 543377765 211111
Q ss_pred -hhhhhccCCCcC------------cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHH-HHHH
Q 007511 369 -QAKLFDTPGLLH------------PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLM-RMDV 425 (601)
Q Consensus 369 -~~~llDtpGL~~------------~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~li-r~~~ 425 (601)
...+++..|+.. .++.+..|||||+||++||++| +|++++| |+..+..+..++ +...
T Consensus 128 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~ 207 (290)
T 2bbs_A 128 RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207 (290)
T ss_dssp HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh
Confidence 122334444432 1233579999999999999999 9999999 777777777753 2222
Q ss_pred HhcCceEEEEE------EeecCEEEeecceec
Q 007511 426 EESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 426 ~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
+ +.+++.++ .+||++++|++|++.
T Consensus 208 -~-~~tviivtHd~~~~~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 208 -A-NKTRILVTSKMEHLKKADKILILHEGSSY 237 (290)
T ss_dssp -T-TSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred -C-CCEEEEEecCHHHHHcCCEEEEEECCeEE
Confidence 3 56676433 358999999999873
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.69 E-value=1.7e-17 Score=184.75 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=122.8
Q ss_pred EEEeEeecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCc-ee
Q 007511 283 FVSAVKNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTT-LG 358 (601)
Q Consensus 283 lvSa~kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT-~~ 358 (601)
+.++.+.|+.. .++.+ ++.+.+|+++ ++|+||||||||+++|+|+.+|++|.+.. ...++|++|.+. +..| .+
T Consensus 290 ~~~l~~~~~~~-~l~~~-~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 290 YPRLVKDYGSF-RLEVE-PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-DLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp ECCEEEEETTE-EEEEC-CEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-CCCEEEECSSCCCCCSSBHHH
T ss_pred EeeEEEEECCE-EEEeC-ccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CceEEEEecCCcCCCCCcHHH
Confidence 34555666542 35555 6667788765 49999999999999999999999998754 457999999875 4555 34
Q ss_pred eeeee--ccccc---hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHH
Q 007511 359 IVRVE--GVLPA---QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRM 423 (601)
Q Consensus 359 ~i~~~--~~l~~---~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~ 423 (601)
++... ..... ..++++.+|+.. .++.+..|||||||||+||++| +|++++| |+..+..+..+++.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 33211 00011 246788899876 7889999999999999999999 9999999 89999999999998
Q ss_pred HHHhcCceEEE-------EEEeecCEEEeec
Q 007511 424 DVEESSVESIY-------VTVWASPYLPLHM 447 (601)
Q Consensus 424 ~~~~~g~tii~-------~~~~ad~vl~l~~ 447 (601)
+..+.|.+++. +..+||++++|+.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 76544667763 3458999999984
No 49
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.68 E-value=3.2e-17 Score=172.87 Aligned_cols=183 Identities=16% Similarity=0.097 Sum_probs=120.9
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+...|+|++ ||+.++..+. ..|.++|..+ +..++ ++++|+||+||++.. ....+..|+..+ +
T Consensus 126 ~i~anvD~v~i-v~a~~P~~~~-~~i~r~L~~a-------~~~~~-----~~iivlNK~DL~~~~-~~~~~~~~~~~y-~ 189 (358)
T 2rcn_A 126 PIAANIDQIVI-VSAILPELSL-NIIDRYLVGC-------ETLQV-----EPLIVLNKIDLLDDE-GMDFVNEQMDIY-R 189 (358)
T ss_dssp EEEECCCEEEE-EEESTTTCCH-HHHHHHHHHH-------HHHTC-----EEEEEEECGGGCCHH-HHHHHHHHHHHH-H
T ss_pred HHHhcCCEEEE-EEeCCCCCCH-HHHHHHHHHH-------HhcCC-----CEEEEEECccCCCch-hHHHHHHHHHHH-H
Confidence 34567888884 5788866554 4688887643 22232 689999999999742 112367787654 4
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhcccc-CCCCCccc---------cc
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVD-AGRGGDGE---------EK 341 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~-~~~G~i~~---------~~ 341 (601)
..| ..++++|+.++.|.+.|...+ .+..++++|+||||||||||+|+|... +..|.+.. ..
T Consensus 190 ~~G----~~v~~~Sa~~~~gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~ 260 (358)
T 2rcn_A 190 NIG----YRVLMVSSHTQDGLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTA 260 (358)
T ss_dssp TTT----CCEEECBTTTTBTHHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CC
T ss_pred hCC----CcEEEEecCCCcCHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEE
Confidence 555 258899999888876554432 333456699999999999999999999 98886632 23
Q ss_pred cceeEeeecCC--CCCc-eeeeeeeccccc------hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc
Q 007511 342 NIVSHLTEAPV--PGTT-LGIVRVEGVLPA------QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL 402 (601)
Q Consensus 342 ~~i~~v~qs~~--pgtT-~~~i~~~~~l~~------~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL 402 (601)
..+++++|... +..+ .++ .+. .+.. ..++++..|+.. .+.....|| ||+||+++++++
T Consensus 261 ~~i~~v~q~~~l~dtpgv~e~-~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 261 ARLYHFPHGGDVIDSPGVREF-GLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CEEEECTTSCEEEECHHHHTC-CCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred EEEEEECCCCEecCcccHHHh-hhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 34666666543 2222 121 110 0111 146788888876 677888999 999999999987
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.66 E-value=6.7e-17 Score=182.08 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=117.5
Q ss_pred EeEeecCCc-cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------c--------------
Q 007511 285 SAVKNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------E-------------- 339 (601)
Q Consensus 285 Sa~kg~G~~-~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------~-------------- 339 (601)
++.+.||.. .++.++ + .+.+|+++. +|+||||||||+|+|+|++.|+.|.+. .
T Consensus 96 ~ls~~yg~~~~~l~~v-s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 96 DCVHRYGVNAFVLYRL-P-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp SEEEECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CeEEEECCCCeeeCCC-C-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 455677765 378888 5 678887655 999999999999999999999999741 0
Q ss_pred cccceeEeeecCC--C----CCceeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 340 EKNIVSHLTEAPV--P----GTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 340 ~~~~i~~v~qs~~--p----gtT~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
.+..+++++|... + ++..+++..........++++.+||.. .++.+.+|||||+|||+||++| +|++|+|
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLD 253 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFD 253 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0123455555321 1 211332221101122367889999977 7889999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecc
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMG 448 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~G 448 (601)
|+..+..+..+++.+..+ |.+++.++ .+||++++|+.+
T Consensus 254 EPTs~LD~~~~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 254 EPSSYLDIRQRLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred CCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 888999999999988765 67777443 478999999754
No 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.66 E-value=6e-17 Score=180.36 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=117.5
Q ss_pred EeEeecCCc-cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc---------c--------------
Q 007511 285 SAVKNWGLK-SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG---------E-------------- 339 (601)
Q Consensus 285 Sa~kg~G~~-~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~---------~-------------- 339 (601)
++.+.||.. .++.++ + .+.+|++++ +|+||||||||+|+|+|++.|+.|.+. .
T Consensus 26 ~ls~~yg~~~~~l~~v-s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 26 DCVHRYGVNAFVLYRL-P-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CEEEECSTTCCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred CcEEEECCccccccCc-C-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 556778765 378888 5 678887655 999999999999999999999998730 0
Q ss_pred cccceeEeeecCC--CCC---c-eeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-
Q 007511 340 EKNIVSHLTEAPV--PGT---T-LGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI- 409 (601)
Q Consensus 340 ~~~~i~~v~qs~~--pgt---T-~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL- 409 (601)
....+++++|... +.. | .+++..........++++.+|+.. .++.+.+|||||+|||+||++| +|++++|
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 0123455555321 211 2 222211001122367889999976 7889999999999999999999 9999999
Q ss_pred ------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecc
Q 007511 410 ------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMG 448 (601)
Q Consensus 410 ------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~G 448 (601)
|+..+..+..+++.+..+ |.+++.++ .+||++++|+++
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 888889999999988765 67777443 478999999764
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1e-16 Score=180.44 Aligned_cols=152 Identities=20% Similarity=0.187 Sum_probs=114.6
Q ss_pred cccchhhhhcccCC-----cE-EEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCC--CCc-eeeeeeec
Q 007511 294 SLIDDVVDLAGKRG-----NV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVP--GTT-LGIVRVEG 364 (601)
Q Consensus 294 ~LL~~I~~l~~~~G-----~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~p--gtT-~~~i~~~~ 364 (601)
..++++ ++.+..| ++ +++|+||||||||+++|+|+.+|++|.. .....+++++|...+ ..| .+++....
T Consensus 361 ~~l~~v-sl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~~~~i~~~~q~~~~~~~~tv~e~~~~~~ 438 (608)
T 3j16_B 361 KTQGDF-VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IPKLNVSMKPQKIAPKFPGTVRQLFFKKI 438 (608)
T ss_dssp EECSSC-EEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CCSCCEEEECSSCCCCCCSBHHHHHHHHC
T ss_pred cccCce-EEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-ccCCcEEEecccccccCCccHHHHHHHHh
Confidence 355666 6666666 44 5599999999999999999999999963 234468999987652 223 44322110
Q ss_pred --cccc---hhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcC
Q 007511 365 --VLPA---QAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESS 429 (601)
Q Consensus 365 --~l~~---~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g 429 (601)
.... ..++++.+|+.. .++.+.+|||||||||+||++| +|++|+| |+..+..+..+++.+..+.|
T Consensus 439 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g 518 (608)
T 3j16_B 439 RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK 518 (608)
T ss_dssp SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 0111 246788888877 7889999999999999999999 9999999 88899999999998865547
Q ss_pred ceEEEE-------EEeecCEEEeec
Q 007511 430 VESIYV-------TVWASPYLPLHM 447 (601)
Q Consensus 430 ~tii~~-------~~~ad~vl~l~~ 447 (601)
.|++.+ ..+||++++|+.
T Consensus 519 ~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 519 KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 777743 357999999986
No 53
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.63 E-value=1.8e-16 Score=193.16 Aligned_cols=177 Identities=11% Similarity=0.141 Sum_probs=131.2
Q ss_pred ceEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------ccccc
Q 007511 279 TKLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKN 342 (601)
Q Consensus 279 ~~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~ 342 (601)
.+|.+.++..+|.. ..+|+++ ++.+++|+ +++||+||||||||+++|+|++.|.+|.+ ...|+
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL~~i-sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEILKGL-SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSEEEE-EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHT
T ss_pred CeEEEEEEEEeCCCCCCCccccce-eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHh
Confidence 36889999999953 3589999 99999985 66699999999999999999999999954 35678
Q ss_pred ceeEeeecCC--CCCceeeeeeecc---ccc--hhhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc-
Q 007511 343 IVSHLTEAPV--PGTTLGIVRVEGV---LPA--QAKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL- 402 (601)
Q Consensus 343 ~i~~v~qs~~--pgtT~~~i~~~~~---l~~--~~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL- 402 (601)
++++|+|++. .||-++|+.+... ... ..+.++..|+ .. -...-..||||||||++|||||
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll 1233 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV 1233 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH
Confidence 8999999998 6666999875421 111 1223333333 21 1223457999999999999999
Q ss_pred -CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc---hHHHHH
Q 007511 403 -KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN---ACTMVE 458 (601)
Q Consensus 403 -~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~---a~e~~~ 458 (601)
+|++++| |+.....+...++... .+.|++.++ ..||++++|++|++.+ .+++++
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999 6666667777776543 256777444 3689999999999854 345554
No 54
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.62 E-value=4.2e-16 Score=189.49 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=126.6
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
.|.+.++...|+. ..+++++ ++.+++|++ ++||+||||||||+++|+|+++|++|.+ ...++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGL-NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEE-EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEEEEEEcCCCCCCcceecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 5888899999964 3589999 999999975 5599999999999999999999999955 234567
Q ss_pred eeEeeecCC--CCCceeeeeeeccccch---hhh---------hcc-C-CCcC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQ---AKL---------FDT-P-GLLH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~~---~~l---------lDt-p-GL~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|++. ++|..+|+.+....... .+. ++. | |+.. .......||||||||++||||| +|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 999999997 66558888754211111 111 221 2 2222 3445678999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+...++... + |.|++.++ ..||++++|++|++.
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~l~~i~~~d~i~vl~~G~i~ 603 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDKAR-E-GRTTIVIAHRLSTVRNADVIAGFDGGVIV 603 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHHHH-T-TSEEEEECSCHHHHTTCSEEEECSSSCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999 6777777777776543 3 66776443 358999999999974
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.61 E-value=3.6e-16 Score=190.63 Aligned_cols=169 Identities=13% Similarity=0.153 Sum_probs=127.8
Q ss_pred eEEEEEeEeecCC---ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 280 KLHFVSAVKNWGL---KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~---~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
+|.+.++...|.. ..+|+++ ++.+++|+ +++||++|||||||+++|+|++.|.+|.+ ...++.
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~i-sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGM-NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEE-EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred cEEEEEeeeeCCCCCCCceeece-EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 6889999999953 4689999 99999996 45599999999999999999999999954 235678
Q ss_pred eeEeeecCC--CCCceeeeeeeccccch---hhhhccCCC-----------cC-cCCccCCCCHHHHHHhcccccc--CC
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLPAQ---AKLFDTPGL-----------LH-PNQITTRLTREEQKLVNINKEL--KP 404 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~~~---~~llDtpGL-----------~~-~~~~~~~LSgGe~qrv~iaraL--~P 404 (601)
+++++|+++ .+|-++|+.+....... .+.++..++ .. -...-..||||||||++||||+ +|
T Consensus 494 i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 494 VAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred ccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 999999998 44449998764221111 222222222 21 2233567999999999999999 99
Q ss_pred CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceec
Q 007511 405 RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTE 451 (601)
Q Consensus 405 ~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~ 451 (601)
++++| |+.....+...+..... +.|++.++ ..||++++|++|++.
T Consensus 574 ~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i~~aD~Iivl~~G~iv 631 (1321)
T 4f4c_A 574 KILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTIRNADLIISCKNGQVV 631 (1321)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTTTTCSEEEEEETTEEE
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHHHhCCEEEEeeCCeee
Confidence 99999 77777777777766543 56776443 479999999999984
No 56
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.61 E-value=4.1e-16 Score=161.46 Aligned_cols=184 Identities=17% Similarity=0.126 Sum_probs=125.3
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|.|++|+|+.+++.++. .+.+++.... ..+ .|+++|+||+||+++.. .....+|.. .++.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~-------~~~-----~~~ilV~NK~DL~~~~~-v~~~~~~~~-~~~~ 140 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYE-------YFK-----VEPVIVFNKIDLLNEEE-KKELERWIS-IYRD 140 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHH-------HTT-----CEEEEEECCGGGCCHHH-HHHHHHHHH-HHHH
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHH-------hCC-----CCEEEEEEcccCCCccc-cHHHHHHHH-HHHH
Confidence 4667999999999999876654 5667665321 112 37999999999985310 012445543 3344
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccc-------------
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE------------- 339 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~------------- 339 (601)
.| ..++.+|+.++.|.+.+++.+ .+..++++|+||||||||+|+|+ +..+.+|.+..
T Consensus 141 ~g----~~~~~~SA~~g~gi~~L~~~l-----~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~ 210 (302)
T 2yv5_A 141 AG----YDVLKVSAKTGEGIDELVDYL-----EGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR 210 (302)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHT-----TTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE
T ss_pred CC----CeEEEEECCCCCCHHHHHhhc-----cCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE
Confidence 44 268899999999988887765 22245569999999999999999 99999886642
Q ss_pred -cc-cceeEeeecCC-------CCCceeee--eeec------cccc----------hhhhhccCCCcC--cCCccCCCCH
Q 007511 340 -EK-NIVSHLTEAPV-------PGTTLGIV--RVEG------VLPA----------QAKLFDTPGLLH--PNQITTRLTR 390 (601)
Q Consensus 340 -~~-~~i~~v~qs~~-------pgtT~~~i--~~~~------~l~~----------~~~llDtpGL~~--~~~~~~~LSg 390 (601)
.. +.+++++|.+. +.+|.+++ .+.. .+.+ ..++++..||.. .++++..||+
T Consensus 211 ~~~~~~~g~v~d~pg~~~~~l~~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~ 290 (302)
T 2yv5_A 211 LIPFGKGSFVGDTPGFSKVEATMFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKV 290 (302)
T ss_dssp EEEETTTEEEESSCCCSSCCGGGTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTC
T ss_pred EEEcCCCcEEEECcCcCcCcccccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 01 24788988762 34554555 2220 0111 256788889974 5778888999
Q ss_pred HHHHHhccccc
Q 007511 391 EEQKLVNINKE 401 (601)
Q Consensus 391 Ge~qrv~iara 401 (601)
..++++.+||.
T Consensus 291 ~~~R~~~~~~~ 301 (302)
T 2yv5_A 291 YLEEIKELCRE 301 (302)
T ss_dssp CCTTHHHHSSC
T ss_pred HHHHHHHHhcc
Confidence 88888888874
No 57
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.61 E-value=7.6e-16 Score=157.87 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=105.9
Q ss_pred CCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC
Q 007511 177 LPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS 256 (601)
Q Consensus 177 lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~ 256 (601)
+|.+.- ...+++...+..+|+|++|+|++++..+.++.+.+++. + .|+++|+||+||++.
T Consensus 6 ~PGhm~--ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~----------------~-kp~ilVlNK~DL~~~- 65 (282)
T 1puj_A 6 FPGHMA--KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILK----------------N-KPRIMLLNKADKADA- 65 (282)
T ss_dssp ---CTT--HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCS----------------S-SCEEEEEECGGGSCH-
T ss_pred CchHHH--HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHC----------------C-CCEEEEEECcccCCH-
Confidence 566532 22356677788899999999999999988878877753 1 279999999999863
Q ss_pred CChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcc------------cC-CcEEEECCCCCchhHHH
Q 007511 257 LSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG------------KR-GNVWAIGAQNAGKSTLL 323 (601)
Q Consensus 257 ~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~------------~~-G~v~ivG~nGaGKSTLL 323 (601)
...+.|...+ ++.| ..++.+|+..+.|...+++.+..+.. .. -.++++|.+|+|||||+
T Consensus 66 ---~~~~~~~~~~-~~~g----~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsli 137 (282)
T 1puj_A 66 ---AVTQQWKEHF-ENQG----IRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLI 137 (282)
T ss_dssp ---HHHHHHHHHH-HTTT----CCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHH
T ss_pred ---HHHHHHHHHH-HhcC----CcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHH
Confidence 4567787654 3334 25788999999999988876644321 11 15788999999999999
Q ss_pred HHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCc
Q 007511 324 NAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 324 n~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
|+|.|.... ..+..||+|.+...+. +.....++||||+..+
T Consensus 138 N~l~~~~~~---------------~~~~~~g~T~~~~~~~--~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 138 NRLAKKNIA---------------KTGDRPGITTSQQWVK--VGKELELLDTPGILWP 178 (282)
T ss_dssp HHHHTSCCC---------------------------CCEE--ETTTEEEEECCCCCCS
T ss_pred HHHhcCcee---------------ecCCCCCeeeeeEEEE--eCCCEEEEECcCcCCC
Confidence 999975422 2344578886554332 3345689999999764
No 58
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.60 E-value=1.2e-15 Score=185.64 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=126.4
Q ss_pred eEEEEEeEeecCCc---cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc------------cccccc
Q 007511 280 KLHFVSAVKNWGLK---SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD------------GEEKNI 343 (601)
Q Consensus 280 ~V~lvSa~kg~G~~---~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i------------~~~~~~ 343 (601)
.+.+.++...|+.. .+++++ ++.+.+|++ +++|+||||||||+++|+|+++|++|.+ ...++.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~v-sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGL-SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSC-CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred cEEEEEEEEECCCCCCCeeecce-eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 58888898998643 589999 999999975 5599999999999999999999999854 234677
Q ss_pred eeEeeecCC--CCCceeeeeeecccc--ch---h---------hhhccC--CCcC-cCCccCCCCHHHHHHhcccccc--
Q 007511 344 VSHLTEAPV--PGTTLGIVRVEGVLP--AQ---A---------KLFDTP--GLLH-PNQITTRLTREEQKLVNINKEL-- 402 (601)
Q Consensus 344 i~~v~qs~~--pgtT~~~i~~~~~l~--~~---~---------~llDtp--GL~~-~~~~~~~LSgGe~qrv~iaraL-- 402 (601)
+++++|++. ++|..+|+.+..... .. . .+++.+ |+.. .......||||||||++|||+|
T Consensus 1109 i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1109 LGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp CEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred eEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 999999987 444488876532111 11 1 222221 2221 2334568999999999999999
Q ss_pred CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCEEEeecceecc
Q 007511 403 KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPYLPLHMGKTEN 452 (601)
Q Consensus 403 ~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~vl~l~~Gki~~ 452 (601)
+|++++| |+.....+...++... .|.|++.++ ..||++++|++|++..
T Consensus 1189 ~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999 7888888888887643 366776332 4699999999999843
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.57 E-value=1.8e-15 Score=176.81 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=122.4
Q ss_pred eEEEEEeEeecCCccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhc-cccCCCCCccccccceeEeeecC---CCC
Q 007511 280 KLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAK-SVDAGRGGDGEEKNIVSHLTEAP---VPG 354 (601)
Q Consensus 280 ~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g-~~~~~~G~i~~~~~~i~~v~qs~---~pg 354 (601)
.+...+..+.||...+++++ ++.+.+|++++ +|+||||||||+++|+| .. .|........+++++|.. .+.
T Consensus 435 ~L~~~~ls~~yg~~~iL~~v-sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKT-QLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEE-EEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTCCCTTTSCEEETTCCCCCCCTT
T ss_pred eeEEeeEEEEECCEEeEecc-eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCccccceeEEEEcccccccccC
Confidence 46677889999988999999 99999998655 99999999999999995 22 121101112357777653 255
Q ss_pred Cc-eeeeeeec-cc-cchhhhhccCCCc-C-cCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccchHHHHHHH
Q 007511 355 TT-LGIVRVEG-VL-PAQAKLFDTPGLL-H-PNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGL 420 (601)
Q Consensus 355 tT-~~~i~~~~-~l-~~~~~llDtpGL~-~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~l 420 (601)
+| .+++.... .. ....++++.+|+. . .++.+..||||||||++||++| +|++++| |+..+..+..+
T Consensus 511 ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 511 TSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp SBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred CcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 66 55553210 00 1125678999995 3 6788999999999999999999 9999999 78888888888
Q ss_pred HHHHHHhcCceEEEE-------EEeecCEEEeecceec
Q 007511 421 MRMDVEESSVESIYV-------TVWASPYLPLHMGKTE 451 (601)
Q Consensus 421 ir~~~~~~g~tii~~-------~~~ad~vl~l~~Gki~ 451 (601)
++. . |.+++.+ ..+||+++.|++|++.
T Consensus 591 L~~---~-g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 591 LNT---C-GITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp HHH---S-CSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHh---C-CCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 876 3 6667643 3579999999999973
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.56 E-value=4.6e-16 Score=181.76 Aligned_cols=172 Identities=12% Similarity=0.099 Sum_probs=117.5
Q ss_pred EEEEEeEeecCC--ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcccc-ccceeEeeecCC----
Q 007511 281 LHFVSAVKNWGL--KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEE-KNIVSHLTEAPV---- 352 (601)
Q Consensus 281 V~lvSa~kg~G~--~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~-~~~i~~v~qs~~---- 352 (601)
+.+.++.+.|+. ..+++++ ++.+..|+++ ++|+||||||||+++|+|+.+|++|.+... ...++|++|.+.
T Consensus 672 L~v~nLs~~Y~g~~~~iL~dV-Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~ 750 (986)
T 2iw3_A 672 VKVTNMEFQYPGTSKPQITDI-NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIE 750 (986)
T ss_dssp EEEEEEEECCTTCSSCSEEEE-EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHGG
T ss_pred EEEEeeEEEeCCCCceeeecc-EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhhh
Confidence 567788888864 5789999 9999999755 599999999999999999999999976432 124677766421
Q ss_pred ---C-------------C------------Cc------------------------------------------------
Q 007511 353 ---P-------------G------------TT------------------------------------------------ 356 (601)
Q Consensus 353 ---p-------------g------------tT------------------------------------------------ 356 (601)
. + .+
T Consensus 751 ~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~ 830 (986)
T 2iw3_A 751 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMK 830 (986)
T ss_dssp GCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTST
T ss_pred cccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcc
Confidence 0 0 00
Q ss_pred ---------eeeeeeecc-----------------------c-----cchhhhhccCCCcC---cCCccCCCCHHHHHHh
Q 007511 357 ---------LGIVRVEGV-----------------------L-----PAQAKLFDTPGLLH---PNQITTRLTREEQKLV 396 (601)
Q Consensus 357 ---------~~~i~~~~~-----------------------l-----~~~~~llDtpGL~~---~~~~~~~LSgGe~qrv 396 (601)
.+++.+... . ....++++.+||.. .++.+..|||||||||
T Consensus 831 ~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRV 910 (986)
T 2iw3_A 831 SERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKL 910 (986)
T ss_dssp TCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHH
T ss_pred cccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHH
Confidence 000000000 0 00134677888864 4678999999999999
Q ss_pred cccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE-------EEEeecCEEEeecceecchHHHH
Q 007511 397 NINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY-------VTVWASPYLPLHMGKTENACTMV 457 (601)
Q Consensus 397 ~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~-------~~~~ad~vl~l~~Gki~~a~e~~ 457 (601)
+||++| +|++++| |+.....+..+++.. +.+++. +..+||+++.|++|++......|
T Consensus 911 aLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~ 983 (986)
T 2iw3_A 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983 (986)
T ss_dssp HHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEECCBTTBCCC-----
T ss_pred HHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCcc
Confidence 999999 9999999 666666666665432 345653 33578999999999985443333
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.55 E-value=1.4e-15 Score=169.12 Aligned_cols=160 Identities=13% Similarity=0.138 Sum_probs=105.6
Q ss_pred eEeecCCccc-cchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcc-----------ccc-----------
Q 007511 286 AVKNWGLKSL-IDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDG-----------EEK----------- 341 (601)
Q Consensus 286 a~kg~G~~~L-L~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~-----------~~~----------- 341 (601)
..++||.+.. +-.+ . ...+|+++. ||+||||||||+|+|+|++.|+.|.+. ...
T Consensus 5 ~~~~~~~~~f~l~~l-~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 5 VIHRYKVNGFKLFGL-P-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp EEEESSTTSCEEECC-C-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CceecCCCceeecCC-C-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 3466765432 1112 1 234676655 999999999999999999999999761 000
Q ss_pred -cc--eeEeeecCC------CCCceeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe
Q 007511 342 -NI--VSHLTEAPV------PGTTLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI 409 (601)
Q Consensus 342 -~~--i~~v~qs~~------pgtT~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL 409 (601)
.. +....+... +++..+.+..........++++.+|+.. .++.+.+|||||+|||+||++| +|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 01 111111110 1111111100000112357888999977 7889999999999999999999 9999999
Q ss_pred -------ccchHHHHHHHHHHHHHhcCceEEEE-------EEeecCEEEeecce
Q 007511 410 -------KAGHSIHIAGLMRMDVEESSVESIYV-------TVWASPYLPLHMGK 449 (601)
Q Consensus 410 -------D~~~~~~l~~lir~~~~~~g~tii~~-------~~~ad~vl~l~~Gk 449 (601)
|+..+..+..+++.+.. |.+++.+ ..+||++++++.|.
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 78888899999988753 6677743 34789999998653
No 62
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.54 E-value=3.6e-15 Score=154.30 Aligned_cols=136 Identities=15% Similarity=0.155 Sum_probs=90.3
Q ss_pred cccCCCCchhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCC
Q 007511 173 VENLLPDFDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDL 252 (601)
Q Consensus 173 ~~~~lP~~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DL 252 (601)
++.++|+.....+ .++..+|+|++|+|+.+++.+.+ .+.++|..+ +..+ .++++|+||+||
T Consensus 69 i~~i~~R~~~l~R------~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~-------~~~~-----~~~vivlnK~DL 129 (307)
T 1t9h_A 69 LMEIKERTNELIR------PPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLV-------EAND-----IQPIICITKMDL 129 (307)
T ss_dssp EEEECCCSCEETT------TTEECCCEEEEEEESTTTTCCHH-HHHHHHHHH-------HTTT-----CEEEEEEECGGG
T ss_pred EEEEcchhhhhhH------HHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHH-------HHCC-----CCEEEEEECCcc
Confidence 3445676543311 35667999999999999888876 788887643 2223 278999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhcccc
Q 007511 253 LPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 253 Lp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
++.......+..|...+ +..| .+++.+|+.++.|...|++.. +|+ ++++|+||||||||||+|+|...
T Consensus 130 ~~~~~~~~~~~~~~~~y-~~~g----~~v~~~sa~~~~g~~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 130 IEDQDTEDTIQAYAEDY-RNIG----YDVYLTSSKDQDSLADIIPHF------QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHT----CCEEECCHHHHTTCTTTGGGG------TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CchhhhHHHHHHHHHHH-HhCC----CeEEEEecCCCCCHHHHHhhc------CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 97520002367776543 4455 368899999999988777654 354 56699999999999999999999
Q ss_pred CCCCCcc
Q 007511 332 AGRGGDG 338 (601)
Q Consensus 332 ~~~G~i~ 338 (601)
+..|.+.
T Consensus 199 ~~~G~I~ 205 (307)
T 1t9h_A 199 LRTNEIS 205 (307)
T ss_dssp -------
T ss_pred cccccee
Confidence 8888653
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.4e-15 Score=167.08 Aligned_cols=170 Identities=12% Similarity=0.151 Sum_probs=111.7
Q ss_pred ccceEEEEEe--------EeecCCcc-ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCcccc---c--
Q 007511 277 KITKLHFVSA--------VKNWGLKS-LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEE---K-- 341 (601)
Q Consensus 277 ~~~~V~lvSa--------~kg~G~~~-LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~---~-- 341 (601)
+|..|.+++. .+.|+... .+..+ . .+.+|+++. +|+||||||||||+|+|++.|+.|.+... .
T Consensus 66 p~~~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l-~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~ 143 (608)
T 3j16_B 66 PFDAIQIINLPTNLEAHVTHRYSANSFKLHRL-P-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEI 143 (608)
T ss_dssp SSCCEEEEEESSSSSTTEEEECSTTSCEEECC-C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHH
T ss_pred CccceEEecCChhhcCCeEEEECCCceeecCC-C-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhh
Confidence 3455555554 45555432 34444 2 346677655 99999999999999999999999976210 0
Q ss_pred ------------------cceeEe--eecCC--CCC------c-eeeeeeeccc--cchhhhhccCCCcC-cCCccCCCC
Q 007511 342 ------------------NIVSHL--TEAPV--PGT------T-LGIVRVEGVL--PAQAKLFDTPGLLH-PNQITTRLT 389 (601)
Q Consensus 342 ------------------~~i~~v--~qs~~--pgt------T-~~~i~~~~~l--~~~~~llDtpGL~~-~~~~~~~LS 389 (601)
..+..+ ++... +.. + .+.+...... ....++++.+|+.. .++.+.+||
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 223 (608)
T 3j16_B 144 IKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLS 223 (608)
T ss_dssp HHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCC
T ss_pred hheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCC
Confidence 000000 01000 000 0 0000000000 11256788899976 788999999
Q ss_pred HHHHHHhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-------EeecCEEEeecce
Q 007511 390 REEQKLVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT-------VWASPYLPLHMGK 449 (601)
Q Consensus 390 gGe~qrv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~-------~~ad~vl~l~~Gk 449 (601)
|||+|||+||++| +|++|+| |+..+..+..+++.+..+ |.+++.++ .+||++++|+.+.
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999 9999999 788888999999987765 66777443 4789999998654
No 64
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.52 E-value=3.5e-15 Score=151.36 Aligned_cols=145 Identities=23% Similarity=0.308 Sum_probs=99.2
Q ss_pred HHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 188 ~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
+++...+..+|+|++|+|++++..+.++.+. ++ + .+.++|+||+||++. ..++.|+.
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-------------~-----k~~iivlNK~DL~~~----~~~~~~~~ 69 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-------------R-----KETIILLNKVDIADE----KTTKKWVE 69 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-------------T-----SEEEEEEECGGGSCH----HHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-------------C-----CCcEEEEECccCCCH----HHHHHHHH
Confidence 3455566789999999999999888766544 33 1 279999999999863 45677876
Q ss_pred HHHHHcCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEe
Q 007511 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHL 347 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v 347 (601)
.+ +..|. .+ .+|+.++.|...+++.+.... ..++++|.+|+|||||+|.|.|.....
T Consensus 70 ~~-~~~g~----~v-~iSa~~~~gi~~L~~~l~~~~---~~v~~vG~~~vGKSslin~l~~~~~~~-------------- 126 (262)
T 3cnl_A 70 FF-KKQGK----RV-ITTHKGEPRKVLLKKLSFDRL---ARVLIVGVPNTGKSTIINKLKGKRASS-------------- 126 (262)
T ss_dssp HH-HHTTC----CE-EECCTTSCHHHHHHHHCCCTT---CEEEEEESTTSSHHHHHHHHHTTCC----------------
T ss_pred HH-HHcCC----eE-EEECCCCcCHHHHHHHHHHhh---hheEEeCCCCCCHHHHHHHHhcccccc--------------
Confidence 54 44442 46 899999999888887773321 368889999999999999999754322
Q ss_pred eecCCCCCceeeeeeeccccchhhhhccCCCcCc
Q 007511 348 TEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHP 381 (601)
Q Consensus 348 ~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~ 381 (601)
.++.||+|.....+. +.....++||||+..+
T Consensus 127 -~~~~~g~T~~~~~~~--~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 127 -VGAQPGITKGIQWFS--LENGVKILDTPGILYK 157 (262)
T ss_dssp ---------CCSCEEE--CTTSCEEESSCEECCC
T ss_pred -cCCCCCCccceEEEE--eCCCEEEEECCCcccC
Confidence 233467775443332 3345689999999764
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.49 E-value=1.7e-14 Score=164.85 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=99.2
Q ss_pred ccccchhhhhcccCCcEEE-ECCCCCchhHHH---------------------HHHhccccCCCCCcc------------
Q 007511 293 KSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLL---------------------NAIAKSVDAGRGGDG------------ 338 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLL---------------------n~L~g~~~~~~G~i~------------ 338 (601)
..++++| ++.+.+|+++. +|+||||||||+ +.+.|+..|+.|.+.
T Consensus 31 ~~~L~~v-sl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 31 AHNLKNI-DVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp STTCCSE-EEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred ccceecc-EEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 4579999 99999997655 999999999998 777777777644210
Q ss_pred ---ccccceeEeeecC---------------------CCCCc-eeeeeeecccc--c---------------hhhhhccC
Q 007511 339 ---EEKNIVSHLTEAP---------------------VPGTT-LGIVRVEGVLP--A---------------QAKLFDTP 376 (601)
Q Consensus 339 ---~~~~~i~~v~qs~---------------------~pgtT-~~~i~~~~~l~--~---------------~~~llDtp 376 (601)
..+..+++++|.. .+.+| .+++.+...+. . ...+++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1112233333321 12334 44443311100 0 01247778
Q ss_pred CCcC--cCCccCCCCHHHHHHhcccccc--CCC--EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------E
Q 007511 377 GLLH--PNQITTRLTREEQKLVNINKEL--KPR--TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------V 437 (601)
Q Consensus 377 GL~~--~~~~~~~LSgGe~qrv~iaraL--~P~--lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~ 437 (601)
||.. .++.+.+|||||||||+||||| +|+ +++| |+..+..+..+++.+..+ |.|++.++ .
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~ 268 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEHDEDTML 268 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT-TCEEEEECCCHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHh
Confidence 8875 5789999999999999999999 777 9998 899999999999998765 77777443 3
Q ss_pred eecCEEEe------eccee
Q 007511 438 WASPYLPL------HMGKT 450 (601)
Q Consensus 438 ~ad~vl~l------~~Gki 450 (601)
+||++++| ++|++
T Consensus 269 ~~d~ii~l~~g~~~~~G~i 287 (670)
T 3ux8_A 269 AADYLIDIGPGAGIHGGEV 287 (670)
T ss_dssp HCSEEEEECSSSGGGCCSE
T ss_pred hCCEEEEecccccccCCEE
Confidence 58999999 78876
No 66
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.49 E-value=1.9e-14 Score=148.84 Aligned_cols=121 Identities=21% Similarity=0.177 Sum_probs=82.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.++..++ ..+.+++.... .. + .|+++|+||+||.+.. ......+|...+
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~-------~~----~-~piilv~NK~DL~~~~-~v~~~~~~~~~~--- 143 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAE-------KN----E-LETVMVINKMDLYDED-DLRKVRELEEIY--- 143 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHH-------HT----T-CEEEEEECCGGGCCHH-HHHHHHHHHHHH---
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHH-------HC----C-CCEEEEEeHHHcCCch-hHHHHHHHHHHH---
Confidence 456799999999999976554 45666654321 11 2 3899999999997531 012245555432
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCcc
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG 338 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~ 338 (601)
+. . ..++.+||+.+.|..+++..+ .+..++++|+||||||||||+|+|+..|++|.+.
T Consensus 144 -~~-~-~~~~~~SAktg~gv~~lf~~l-----~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~ 201 (301)
T 1u0l_A 144 -SG-L-YPIVKTSAKTGMGIEELKEYL-----KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 201 (301)
T ss_dssp -TT-T-SCEEECCTTTCTTHHHHHHHH-----SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred -hh-h-CcEEEEECCCCcCHHHHHHHh-----cCCeEEEECCCCCcHHHHHHHhccccccccccee
Confidence 21 1 368889999999998888765 2224566999999999999999999999988653
No 67
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=3.8e-13 Score=146.16 Aligned_cols=160 Identities=24% Similarity=0.263 Sum_probs=100.2
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+..+...++..+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+... ..
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~-----~p~ilv~NK~D~~~~----~~ 127 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS----------T-----VDTILVANKAENLRE----FE 127 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------T-----CCEEEEEESCCSHHH----HH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------C-----CCEEEEEeCCCCccc----cH
Confidence 4555666677778899999999999987665555666666431 1 279999999998521 01
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhcc----c-------CC--cEEEECCCCCchhHHHHHHhc
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAG----K-------RG--NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~----~-------~G--~v~ivG~nGaGKSTLLn~L~g 328 (601)
...+ .++. ..| +.+++.+||.++.|..++++.+..... . .+ .+++||++|||||||+|.|+|
T Consensus 128 ~~~~-~~~~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 128 REVK-PELY-SLG---FGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp HHTH-HHHG-GGS---SCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHT
T ss_pred HHHH-HHHH-hcC---CCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhC
Confidence 1110 1222 333 346788999999999988877633211 0 11 578899999999999999998
Q ss_pred cccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 329 SVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 329 ~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
... ...++.|++|.+.......+.+ ...++||+|+..
T Consensus 203 ~~~---------------~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~ 240 (439)
T 1mky_A 203 KER---------------ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRR 240 (439)
T ss_dssp STT---------------EEECCCC------CCEEEEETTEEEEESSCSCC--
T ss_pred Ccc---------------cccCCCCCCcCCceEEEEEECCEEEEEEECCCCcc
Confidence 642 1245567787654332222222 246789999854
No 68
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.33 E-value=1.7e-12 Score=140.97 Aligned_cols=158 Identities=23% Similarity=0.274 Sum_probs=97.7
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+..+...++..+|+|++|+|+.+.....+..+.+++.. . + .|+++|+||+|+..... .
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~----------~----~-~pvilv~NK~D~~~~~~---~ 129 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR----------T----K-KPVVLAVNKLDNTEMRA---N 129 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT----------C----C-SCEEEEEECCCC--------C
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----------c----C-CCEEEEEECccCccchh---h
Confidence 445566666677788999999999998766555555555432 1 2 38999999999975321 1
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhccc-------CC--cEEEECCCCCchhHHHHHHhccccC
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK-------RG--NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~-------~G--~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
..+| + ..| +..++.+|+.++.|..++++.+...... .+ +++++|.+|||||||+|.|+|..
T Consensus 130 ~~~~----~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~-- 199 (436)
T 2hjg_A 130 IYDF----Y-SLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE-- 199 (436)
T ss_dssp CCSS----G-GGS---SCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST--
T ss_pred HHHH----H-HcC---CCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC--
Confidence 1111 1 223 3467889999999999988877443321 12 57889999999999999999743
Q ss_pred CCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 333 ~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
....+..+++|.+.+.......+ ...++||||+..
T Consensus 200 -------------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~ 235 (436)
T 2hjg_A 200 -------------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 235 (436)
T ss_dssp -------------TEEEC---------CCEEEEETTEEEEETTHHHHTC
T ss_pred -------------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCc
Confidence 12234557788665433222222 367899999865
No 69
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.32 E-value=4e-13 Score=153.52 Aligned_cols=80 Identities=18% Similarity=0.184 Sum_probs=65.1
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC---CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP---RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P---~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
+.++.+|+.. .++.+.+|||||||||+|||+| +| ++++| |+.....+..+++.+..+ |.|++.++
T Consensus 525 ~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~-g~tvi~vt 603 (670)
T 3ux8_A 525 ETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVIE 603 (670)
T ss_dssp HHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEe
Confidence 4556677754 5788999999999999999999 55 58988 888999999999988766 77777333
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
.+||++++| ++|++.
T Consensus 604 Hd~~~~~~~d~i~~l~~~~g~~~G~i~ 630 (670)
T 3ux8_A 604 HNLDVIKTADYIIDLGPEGGDRGGQIV 630 (670)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEE
T ss_pred CCHHHHHhCCEEEEecCCcCCCCCEEE
Confidence 469999999 889873
No 70
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.7e-13 Score=146.81 Aligned_cols=147 Identities=11% Similarity=0.082 Sum_probs=101.7
Q ss_pred hhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCC-C-cc---ccccceeEeeecCC-----CCCc-eeeeeeecc
Q 007511 298 DVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG-G-DG---EEKNIVSHLTEAPV-----PGTT-LGIVRVEGV 365 (601)
Q Consensus 298 ~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G-~-i~---~~~~~i~~v~qs~~-----pgtT-~~~i~~~~~ 365 (601)
++ ++.+..|+ ++++|+||||||||+++|+|+..++.| . +. ..++.+++++|... +..| .+++ +...
T Consensus 130 ~v-sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 130 KI-RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HH-HHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred cC-ceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 35 67777775 566999999999999999999999988 7 42 23567888888762 2234 4444 3211
Q ss_pred c-------cchhhhhccCCCcCcCCccCCCCHHHHHHhccccc--c--CCCE----EEecc-ch------HHHHHHHHHH
Q 007511 366 L-------PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKE--L--KPRT----YRIKA-GH------SIHIAGLMRM 423 (601)
Q Consensus 366 l-------~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iara--L--~P~l----llLD~-~~------~~~l~~lir~ 423 (601)
. .....+++.+|+..... ...|||||+||+++|++ | +|++ ++||. .. ...+..+++.
T Consensus 208 ~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~ 286 (460)
T 2npi_A 208 LTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEK 286 (460)
T ss_dssp CBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHH
Confidence 1 11246778888876333 78999999999999999 8 9999 99966 22 2333444332
Q ss_pred HHHhcCceEEEEE-------------EeecC-----EEEee-cceec
Q 007511 424 DVEESSVESIYVT-------------VWASP-----YLPLH-MGKTE 451 (601)
Q Consensus 424 ~~~~~g~tii~~~-------------~~ad~-----vl~l~-~Gki~ 451 (601)
.+.+++.++ .+||+ +++|+ .|++.
T Consensus 287 ----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 287 ----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp ----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred ----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 245555332 46788 99998 88764
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.29 E-value=2.7e-13 Score=132.69 Aligned_cols=122 Identities=14% Similarity=0.123 Sum_probs=76.0
Q ss_pred ecCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccc---------cccceeEeeecCCCCCcee
Q 007511 289 NWGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGE---------EKNIVSHLTEAPVPGTTLG 358 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~---------~~~~i~~v~qs~~pgtT~~ 358 (601)
.||...+++++ .+|++ +++|+||||||||+++|+|+ +|++|.+.. .++.+++++|.+ .+
T Consensus 9 ~~g~~~~l~~i-----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-----~e 77 (208)
T 3b85_A 9 TLGQKHYVDAI-----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-----NE 77 (208)
T ss_dssp SHHHHHHHHHH-----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred CHhHHHHHHhc-----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-----HH
Confidence 45556677776 45654 55999999999999999999 999997732 234577777754 22
Q ss_pred ee-eeecc----c------cchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEeccc---hHHHHHHHHH
Q 007511 359 IV-RVEGV----L------PAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKAG---HSIHIAGLMR 422 (601)
Q Consensus 359 ~i-~~~~~----l------~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~---~~~~l~~lir 422 (601)
++ .+... + ....++++. | .||+||+++|++| +|++++||+- ....+..+++
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l~~-g------------lGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~ 144 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLMEA-G------------IVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLT 144 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHHHT-T------------SEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHh-C------------CchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHH
Confidence 32 11000 0 001122222 2 2999999999999 9999999643 4455566665
Q ss_pred HHHHhcCceEEEEEE
Q 007511 423 MDVEESSVESIYVTV 437 (601)
Q Consensus 423 ~~~~~~g~tii~~~~ 437 (601)
.. . .+.+++ ++.
T Consensus 145 ~l-~-~g~tii-vtH 156 (208)
T 3b85_A 145 RL-G-FGSKMV-VTG 156 (208)
T ss_dssp TB-C-TTCEEE-EEE
T ss_pred Hh-c-CCCEEE-EEC
Confidence 54 2 356665 544
No 72
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=1.6e-11 Score=133.98 Aligned_cols=158 Identities=24% Similarity=0.254 Sum_probs=97.1
Q ss_pred hhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH
Q 007511 182 FDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR 261 (601)
Q Consensus 182 ~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~ 261 (601)
+.+.+..+...++..+|+|++|+|+.+.....+..+.+++... + .|+++|+||+|+.... ..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--------------~-~pvilV~NK~D~~~~~---~~ 149 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--------------K-KPVVLAVNKLDNTEMR---AN 149 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--------------C-SCEEEEEECC-----------
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--------------C-CCEEEEEECccchhhh---hh
Confidence 4555666666777789999999999987666666666665421 2 3899999999987431 11
Q ss_pred HHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhhccc---------CCcEEEECCCCCchhHHHHHHhccccC
Q 007511 262 FEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDLAGK---------RGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~---------~G~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
..+ ++ ..| +..++.+|+.++.|..++++.+...... .-.++++|.+|+|||||+|.|+|...
T Consensus 150 ~~e----~~-~lg---~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~- 220 (456)
T 4dcu_A 150 IYD----FY-SLG---FGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER- 220 (456)
T ss_dssp -CC----SG-GGS---SSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT-
T ss_pred HHH----HH-HcC---CCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCc-
Confidence 111 11 222 3567789999999998888776443211 11578899999999999999996431
Q ss_pred CCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 333 GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 333 ~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
...+..|++|.+......... ....++||||+..
T Consensus 221 --------------~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 221 --------------VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255 (456)
T ss_dssp --------------EEECC------CTTSEEEEETTEEEEETTGGGTTT
T ss_pred --------------cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCc
Confidence 233455777765433222222 2357899999875
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.13 E-value=3.5e-12 Score=129.83 Aligned_cols=103 Identities=17% Similarity=0.128 Sum_probs=62.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCcc---------ccccceeEeeecCC--CCCc-eeeeeeeccccch--hhhh
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG---------EEKNIVSHLTEAPV--PGTT-LGIVRVEGVLPAQ--AKLF 373 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~---------~~~~~i~~v~qs~~--pgtT-~~~i~~~~~l~~~--~~ll 373 (601)
.+++||+||||||||||+|+|+..++.|.+. ..++.+++++|... +.+| .+++.+....... ...+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 4678999999999999999999999988541 23456888888764 5556 6666553222211 0111
Q ss_pred ccCCCcC-cCCccCCCCHHHHHHhccccccCCCEEEecc
Q 007511 374 DTPGLLH-PNQITTRLTREEQKLVNINKELKPRTYRIKA 411 (601)
Q Consensus 374 DtpGL~~-~~~~~~~LSgGe~qrv~iaraL~P~lllLD~ 411 (601)
....... .+....+||+||+||+++||++-. +++||+
T Consensus 84 ~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~-llllde 121 (270)
T 3sop_A 84 EKYINEQYEKFLKEEVNIARKKRIPDTRVHCC-LYFISP 121 (270)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE-EEEECC
T ss_pred HHHHHHHHHhhhHHhcCcccchhhhhheeeee-eEEEec
Confidence 1111112 455678899999999999999833 777753
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.13 E-value=1.6e-12 Score=134.33 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=87.0
Q ss_pred ccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCcee-eeeeecccc-
Q 007511 293 KSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLG-IVRVEGVLP- 367 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~-~i~~~~~l~- 367 (601)
..+++++ ++.+.+|+++ ++|+||||||||+++|+|++ .|.+ +.+++|.+. +++..+ ++.+.....
T Consensus 113 ~~vL~~v-sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~~~~ 182 (305)
T 2v9p_A 113 INALKLW-LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDDATH 182 (305)
T ss_dssp HHHHHHH-HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEEECH
T ss_pred hhhhccc-eEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCccccH
Confidence 5688999 8999998754 59999999999999999998 5743 345566553 444444 555431111
Q ss_pred chhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEe---ccchHHHHHHHHHHHHHhcCceEEEEEEeecC
Q 007511 368 AQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRI---KAGHSIHIAGLMRMDVEESSVESIYVTVWASP 441 (601)
Q Consensus 368 ~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllL---D~~~~~~l~~lir~~~~~~g~tii~~~~~ad~ 441 (601)
....+++.. +.. .+ ...|||||+|| ||++ +|++++. |+.....+..+ . .. +.+..+||+
T Consensus 183 ~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLlTs~LD~~~~~~i~~l------t--H~-~~~~~~aD~ 247 (305)
T 2v9p_A 183 ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLVTSNIDVQAEDRYLYL------H--SR-VQTFRFEQP 247 (305)
T ss_dssp HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEEEESSCSTTCGGGGGG------T--TT-EEEEECCCC
T ss_pred HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEEECCCCHHHHHHHHHH------h--CC-HHHHHhCCE
Confidence 123344442 222 22 67899999999 8888 8999985 77666555421 1 11 234578999
Q ss_pred EEEeecceec
Q 007511 442 YLPLHMGKTE 451 (601)
Q Consensus 442 vl~l~~Gki~ 451 (601)
+ +|++|++.
T Consensus 248 i-vl~~G~iv 256 (305)
T 2v9p_A 248 C-TDESGEQP 256 (305)
T ss_dssp C-CCC---CC
T ss_pred E-EEeCCEEE
Confidence 9 99999873
No 75
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.11 E-value=6.9e-12 Score=129.64 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=92.2
Q ss_pred hhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-------c---------c--ccceeEeeecCC---CCCc-e
Q 007511 301 DLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-------E---------E--KNIVSHLTEAPV---PGTT-L 357 (601)
Q Consensus 301 ~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~---------~--~~~i~~v~qs~~---pgtT-~ 357 (601)
++.+.+|+++ ++|+||||||||++.|+|++.+..|.+. . . +..+++++|.+. |..| .
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~ 173 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 173 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHH
Confidence 4445667654 5999999999999999999998888541 0 1 235788887642 3334 4
Q ss_pred eeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC--EEEeccchHHHHHHHHHHHHHhcCceE
Q 007511 358 GIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR--TYRIKAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 358 ~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~--lllLD~~~~~~l~~lir~~~~~~g~ti 432 (601)
+++.+.........++|++|+.+ .++++.+|| +||+++|+++ +|+ +++|||...+.....++......+.++
T Consensus 174 e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDptsglD~~~~~~~~~~~~g~t~ 250 (302)
T 3b9q_A 174 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG 250 (302)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHHHHHHHhcCCCE
Confidence 55443211111245789999976 566788898 8999999999 899 999997766665666666554446666
Q ss_pred EEEEE
Q 007511 433 IYVTV 437 (601)
Q Consensus 433 i~~~~ 437 (601)
+.++.
T Consensus 251 iiiTh 255 (302)
T 3b9q_A 251 LILTK 255 (302)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 65554
No 76
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.10 E-value=1.1e-10 Score=136.18 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=64.9
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C---CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K---PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~---P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
++++.+||.. .++.+.+|||||+|||+||++| + |++|+| |+.....+..+++.+..+ |.|++.++
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G~TVIvI~ 865 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-GNTVIVIE 865 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 5667788864 5788999999999999999999 4 468888 788899999999988765 67777433
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
..||++++| +.|++.
T Consensus 866 HdL~~i~~ADrIivLgp~gg~~~G~Iv 892 (916)
T 3pih_A 866 HNLDVIKNADHIIDLGPEGGKEGGYIV 892 (916)
T ss_dssp CCHHHHTTCSEEEEEESSSGGGCCEEE
T ss_pred CCHHHHHhCCEEEEecCCCCCCCCEEE
Confidence 359999999 788874
No 77
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.10 E-value=3.1e-11 Score=139.78 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=65.9
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C---CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K---PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~---P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
.++++.+||.. .++.+..|||||+|||.||++| + |++|+| |+.....+..+++.+..+ |.+++.+
T Consensus 711 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~tVIvi 789 (842)
T 2vf7_A 711 LDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA-GNTVIAV 789 (842)
T ss_dssp HHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 35677788865 5788999999999999999999 4 689998 888899999999988766 6677632
Q ss_pred E------EeecCEEEe------ecceec
Q 007511 436 T------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 436 ~------~~ad~vl~l------~~Gki~ 451 (601)
+ ..||++++| ++|++.
T Consensus 790 sHdl~~i~~aDrii~L~p~~g~~~G~Iv 817 (842)
T 2vf7_A 790 EHKMQVVAASDWVLDIGPGAGEDGGRLV 817 (842)
T ss_dssp CCCHHHHTTCSEEEEECSSSGGGCCSEE
T ss_pred cCCHHHHHhCCEEEEECCCCCCCCCEEE
Confidence 2 579999999 688873
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.10 E-value=3.2e-11 Score=129.57 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=81.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCcccccc---ceeEeeecCC-CCCc-eeeeeeeccccchhhhhccCCCcCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKN---IVSHLTEAPV-PGTT-LGIVRVEGVLPAQAKLFDTPGLLHPN 382 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~---~i~~v~qs~~-pgtT-~~~i~~~~~l~~~~~llDtpGL~~~~ 382 (601)
.++++|+||||||||||+|+|+..+++|.+..... ..++++|.+. +.+| .++..+........++++..|+...+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~ 150 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYD 150 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccC
Confidence 35669999999999999999999999996632211 1267777754 5666 56554432112236778888887644
Q ss_pred CccCCCCHH--HHHHhcccccc---CC---------CEEEe-------ccchHHHHHHHHHHHH
Q 007511 383 QITTRLTRE--EQKLVNINKEL---KP---------RTYRI-------KAGHSIHIAGLMRMDV 425 (601)
Q Consensus 383 ~~~~~LSgG--e~qrv~iaraL---~P---------~lllL-------D~~~~~~l~~lir~~~ 425 (601)
.... ||+| |+||+.+|++| +. +++++ |+..+..+..+++...
T Consensus 151 ~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 151 FFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp EEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred CeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 4444 9999 99999999998 22 23322 6667788888888764
No 79
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.05 E-value=1.5e-10 Score=134.65 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=65.9
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C---CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K---PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~---P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~ 435 (601)
.++++.+||.. .++.+..|||||+|||+||++| + |++|+| |+.....+..+++.+..+ |.+++.+
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvi 904 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-GDTVLVI 904 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 35677788865 5788999999999999999999 4 489998 888899999999988765 6677633
Q ss_pred E------EeecCEEEe------ecceec
Q 007511 436 T------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 436 ~------~~ad~vl~l------~~Gki~ 451 (601)
+ .+||++++| +.|++.
T Consensus 905 sHdl~~i~~aDrIivL~p~gG~~~G~Iv 932 (972)
T 2r6f_A 905 EHNLDVIKTADYIIDLGPEGGDRGGQIV 932 (972)
T ss_dssp CCCHHHHTTCSEEEEECSSSTTSCCSEE
T ss_pred cCCHHHHHhCCEEEEEcCCCCCCCCEEE
Confidence 3 369999999 678873
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.03 E-value=1.8e-10 Score=134.40 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=65.1
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C---CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K---PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~---P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
++++.+||.. .++.+..|||||+|||+||++| + |++|+| |+.....+..+++.+..+ |.+++.++
T Consensus 845 ~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-G~TVIvis 923 (993)
T 2ygr_A 845 RTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-GNTVIVIE 923 (993)
T ss_dssp HHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEC
T ss_pred HHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEc
Confidence 4677788864 5788999999999999999999 4 489998 788899999999988765 66776333
Q ss_pred ------EeecCEEEe------ecceec
Q 007511 437 ------VWASPYLPL------HMGKTE 451 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki~ 451 (601)
.+||++++| +.|++.
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv 950 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVV 950 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEE
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEE
Confidence 369999999 678873
No 81
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.02 E-value=2.2e-10 Score=109.25 Aligned_cols=92 Identities=14% Similarity=0.085 Sum_probs=58.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCc-----c--ccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD-----G--EEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i-----~--~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
.++++|+||||||||+++|+|++...-.+. . ..++.+++++|.. +..+++. . .+. .+ .. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~---~~~~~~~-~-~~~-----~~-~~-~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT---EGKKKIF-S-SKF-----FT-SK-KL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET---TCCEEEE-E-ETT-----CC-CS-SE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC---cHHHHHH-H-hhc-----CC-cc-cc
Confidence 367799999999999999999874221110 0 2234567777764 1122221 0 110 00 00 12
Q ss_pred cCCccCCCCHHHHHHhccccc-----c--CCCEEEecc
Q 007511 381 PNQITTRLTREEQKLVNINKE-----L--KPRTYRIKA 411 (601)
Q Consensus 381 ~~~~~~~LSgGe~qrv~iara-----L--~P~lllLD~ 411 (601)
.++.+..||+||+||+++|++ + +|++++||+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDE 107 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeC
Confidence 456778899999999999996 6 999999976
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.01 E-value=2.5e-11 Score=128.19 Aligned_cols=134 Identities=17% Similarity=0.154 Sum_probs=92.3
Q ss_pred hhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCcc-------c-----------cccceeEeeecCC---CCCc-e
Q 007511 301 DLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDG-------E-----------EKNIVSHLTEAPV---PGTT-L 357 (601)
Q Consensus 301 ~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~-----------~~~~i~~v~qs~~---pgtT-~ 357 (601)
++.+.+|.++ +||+||||||||++.|+|++.+..|.+. . .+..+++++|.+. |..| .
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~ 230 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLS 230 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHH
Confidence 4445667654 5999999999999999999998887541 0 1235788887642 3334 4
Q ss_pred eeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC--EEEeccchHHHHHHHHHHHHHhcCceE
Q 007511 358 GIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR--TYRIKAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 358 ~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~--lllLD~~~~~~l~~lir~~~~~~g~ti 432 (601)
+++.+.........++|++|+.+ .++++.+|| +||+++++++ +|+ +++|||...+.....++......+.++
T Consensus 231 e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLDpttglD~~~~~~~~~~~~g~t~ 307 (359)
T 2og2_A 231 KAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQAREFNEVVGITG 307 (359)
T ss_dssp HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHHHHHHHHTCCCE
T ss_pred HHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHHHHHHHhcCCeE
Confidence 55443211111235789999976 566788898 8999999999 899 999997766666666666555446666
Q ss_pred EEEEE
Q 007511 433 IYVTV 437 (601)
Q Consensus 433 i~~~~ 437 (601)
+.++.
T Consensus 308 iiiTh 312 (359)
T 2og2_A 308 LILTK 312 (359)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 65544
No 83
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.98 E-value=4.9e-10 Score=118.79 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCccCCCCHHHHHHhcccccc--------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------Eeec
Q 007511 382 NQITTRLTREEQKLVNINKEL--------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWAS 440 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL--------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad 440 (601)
++.+..|||||+||++||++| +|++++| |+.....+..+++.+..+ |.+++.++ .+||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~-g~tvi~itH~~~~~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL-NKVIVFITHDREFSEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGS-SSEEEEEESCHHHHTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCC
Confidence 467889999999999988775 6999999 888899999999887655 67777444 4689
Q ss_pred CEEEeecceec
Q 007511 441 PYLPLHMGKTE 451 (601)
Q Consensus 441 ~vl~l~~Gki~ 451 (601)
++++|++|++.
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999874
No 84
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.97 E-value=1.1e-10 Score=110.14 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred hhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCC----ceeeeeeeccccchhhhhcc
Q 007511 301 DLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGT----TLGIVRVEGVLPAQAKLFDT 375 (601)
Q Consensus 301 ~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgt----T~~~i~~~~~l~~~~~llDt 375 (601)
++.+.+|++++ +|+||||||||++++.+-.....+ ....+++++++.... +.+.+. ......-.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~-----d~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 71 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISS-----DFCRGLMSDDENDQTVTGAAFDVLH------YIVSKRLQ 71 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEH-----HHHHHHHCSSTTCGGGHHHHHHHHH------HHHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEcc-----HHHHHHhcCcccchhhHHHHHHHHH------HHHHHHHh
Confidence 56677887655 999999999999965432111000 000123333321100 011000 00111111
Q ss_pred CCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe-------ccc----------------hHHHHHHHHHHHHHhcCc
Q 007511 376 PGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI-------KAG----------------HSIHIAGLMRMDVEESSV 430 (601)
Q Consensus 376 pGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL-------D~~----------------~~~~l~~lir~~~~~~g~ 430 (601)
.|...........|+|++||+++|+++ +|++++| |+. ....+..+++....+ |.
T Consensus 72 ~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g~ 150 (171)
T 4gp7_A 72 LGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-GF 150 (171)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-TC
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-CC
Confidence 233221112345699999999999999 9999999 444 335556666656555 66
Q ss_pred eEEEEE
Q 007511 431 ESIYVT 436 (601)
Q Consensus 431 tii~~~ 436 (601)
+++.++
T Consensus 151 tvi~vt 156 (171)
T 4gp7_A 151 RYVYIL 156 (171)
T ss_dssp SEEEEE
T ss_pred cEEEEe
Confidence 766544
No 85
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.96 E-value=9.4e-11 Score=125.78 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=50.6
Q ss_pred CCHHHHHHhcccccc--CC--CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEE------EEeecCEEEe----e
Q 007511 388 LTREEQKLVNINKEL--KP--RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYV------TVWASPYLPL----H 446 (601)
Q Consensus 388 LSgGe~qrv~iaraL--~P--~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~------~~~ad~vl~l----~ 446 (601)
|||||+||++||++| +| ++++| |+.....+..+++.+. + +.+++.+ ..+||++++| +
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~~~~~~d~i~~l~k~~~ 373 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQIAARAHHHYKVEKQVE 373 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHHHHTTCSEEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHhhcCeEEEEEEecc
Confidence 699999999999998 88 99999 7888889999998876 4 5566633 2478999999 7
Q ss_pred ccee
Q 007511 447 MGKT 450 (601)
Q Consensus 447 ~Gki 450 (601)
+|++
T Consensus 374 ~G~~ 377 (415)
T 4aby_A 374 DGRT 377 (415)
T ss_dssp TTEE
T ss_pred CCce
Confidence 8775
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.95 E-value=6e-11 Score=123.14 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=74.2
Q ss_pred ccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCceeeeeeec--cccc------hhhh
Q 007511 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLGIVRVEG--VLPA------QAKL 372 (601)
Q Consensus 304 ~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~~i~~~~--~l~~------~~~l 372 (601)
..+|. ++++|+||||||||+++|+|++.+..|. ..+++++|... |.+..+++.+.. .... ..++
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~ 161 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRF 161 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 34565 4559999999999999999999887663 46789999875 553355544321 0111 1345
Q ss_pred hccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEeccch
Q 007511 373 FDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKAGH 413 (601)
Q Consensus 373 lDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~ 413 (601)
++.++-...+..+..||+||+||+++|+++ +|++++||.-.
T Consensus 162 L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~ 204 (312)
T 3aez_A 162 VTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLN 204 (312)
T ss_dssp HHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTT
T ss_pred HHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCcc
Confidence 555552124466789999999999999998 99999996543
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.93 E-value=7.4e-11 Score=122.01 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=86.0
Q ss_pred Cc-EEEECCCCCchhHHHHHHhccccCCCCCcc-------c-----------cccceeEeeecCC--CCCc-eeeeeeec
Q 007511 307 GN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG-------E-----------EKNIVSHLTEAPV--PGTT-LGIVRVEG 364 (601)
Q Consensus 307 G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~-------~-----------~~~~i~~v~qs~~--pgtT-~~~i~~~~ 364 (601)
|+ ++++|+||||||||++.|+|++.++.|.+. . .+..+++++|.+. |..| .+++....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 44 556999999999999999999999887541 0 1235788888753 4334 44433211
Q ss_pred cccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCC--EEEeccchHHHHHHHHHHHHHhcCceEEEEEEe
Q 007511 365 VLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPR--TYRIKAGHSIHIAGLMRMDVEESSVESIYVTVW 438 (601)
Q Consensus 365 ~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~--lllLD~~~~~~l~~lir~~~~~~g~tii~~~~~ 438 (601)
.......++|++|..+ ....+.+| .+||+++||++ +|+ ++.||+.....+...++......+.+++.++..
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eL---s~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~~~~~~~~~~t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEEL---KKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHH---HHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHH---HHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 1011134789999865 33334444 47899999999 898 444588887888888887766556666665544
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.83 E-value=1.4e-10 Score=128.65 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=104.5
Q ss_pred CCccccchhhhh-cccCCcEEE-ECCCCCchhHHHHH--HhccccCCCCCc-----------cccccceeEeeecCCCCC
Q 007511 291 GLKSLIDDVVDL-AGKRGNVWA-IGAQNAGKSTLLNA--IAKSVDAGRGGD-----------GEEKNIVSHLTEAPVPGT 355 (601)
Q Consensus 291 G~~~LL~~I~~l-~~~~G~v~i-vG~nGaGKSTLLn~--L~g~~~~~~G~i-----------~~~~~~i~~v~qs~~pgt 355 (601)
+....|+++ ++ .+.+|++++ +|+||||||||+++ +.|+.+++.|.+ ....+.+++++|.+...-
T Consensus 23 ~g~~~Ld~i-~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 23 TMIEGFDDI-SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCCTTHHHH-TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CCchhHHHh-cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 345688998 78 788888766 99999999999999 679998888744 112345778877654110
Q ss_pred ceeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEeccchHHHHHHHHHHHHHhcCceE
Q 007511 356 TLGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 356 T~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~~~l~~lir~~~~~~g~ti 432 (601)
+...+... ......++++.+|+.. .++.+..||+||.|+|.++... .|. .-+|+..+..+..+++.+... |.|+
T Consensus 102 ~l~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-~~lD~~~~~~l~~ll~~l~~~-g~tv 178 (525)
T 1tf7_A 102 KLFILDAS-PDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-YDASSVVRRELFRLVARLKQI-GATT 178 (525)
T ss_dssp SEEEEECC-CCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT-TCCHHHHHHHHHHHHHHHHHH-TCEE
T ss_pred cEEEEecC-cccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh-cCCHHHHHHHHHHHHHHHHHC-CCEE
Confidence 11111100 0001123455556554 5667888999999999888876 343 234788889999999988765 7777
Q ss_pred EEEEE----------------eecCEEEeecce
Q 007511 433 IYVTV----------------WASPYLPLHMGK 449 (601)
Q Consensus 433 i~~~~----------------~ad~vl~l~~Gk 449 (601)
+.++. +||++++|++++
T Consensus 179 l~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 179 VMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp EEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred EEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 74322 289999999843
No 89
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.81 E-value=9.3e-10 Score=108.06 Aligned_cols=144 Identities=12% Similarity=-0.102 Sum_probs=74.9
Q ss_pred cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCccc------------cccceeEeeecCC--CCCc--
Q 007511 294 SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGE------------EKNIVSHLTEAPV--PGTT-- 356 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~------------~~~~i~~v~qs~~--pgtT-- 356 (601)
.-++++ ++.+.+|++ +++|+||||||||+++|+|+. | |.+.. .++.+++++|++. +..+
T Consensus 11 ~~l~~i-sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVP-RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCC-ceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 346777 888888865 559999999999999999988 4 54321 2345777877653 2222
Q ss_pred ---eeeeeeecccc-----chhhhhccCCCcCcCCccCCCCHHHHHHhcc-----cccc--CCCEEEe-------ccchH
Q 007511 357 ---LGIVRVEGVLP-----AQAKLFDTPGLLHPNQITTRLTREEQKLVNI-----NKEL--KPRTYRI-------KAGHS 414 (601)
Q Consensus 357 ---~~~i~~~~~l~-----~~~~llDtpGL~~~~~~~~~LSgGe~qrv~i-----araL--~P~lllL-------D~~~~ 414 (601)
.++..+..... ...++++.+.+.-. ...|||||+||+++ ++++ .|.+++| |....
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNKICLF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCCcEEE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 11111111110 11345555443222 14689999999999 6666 5676666 33444
Q ss_pred HHHHHHHHHHHHhcCceEEEEEEeecCEEEeec
Q 007511 415 IHIAGLMRMDVEESSVESIYVTVWASPYLPLHM 447 (601)
Q Consensus 415 ~~l~~lir~~~~~~g~tii~~~~~ad~vl~l~~ 447 (601)
..+...+.....+ .++.. ...+|.++++++
T Consensus 164 ~~i~~~l~~~~~~--~~~~h-~~~~d~iiv~~~ 193 (218)
T 1z6g_A 164 EQIQKRMEQLNIE--LHEAN-LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHHHH--HHHHT-TSCCSEEEECSS
T ss_pred HHHHHHHHHHHHH--HHhhc-ccCCCEEEECCC
Confidence 4454444433222 11000 145777877774
No 90
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.71 E-value=6.1e-09 Score=108.82 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=66.2
Q ss_pred ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCc----eeeeeeecccc
Q 007511 293 KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTT----LGIVRVEGVLP 367 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT----~~~i~~~~~l~ 367 (601)
..+++.+ ++.+.+|. ++++|+||||||||+|+|+|+++++.|.+.. ...+... .+.+.+
T Consensus 158 ~~~l~~l-~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i----------~~~~e~~~~~~~~~i~~----- 221 (330)
T 2pt7_A 158 EQAISAI-KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI----------EDTEEIVFKHHKNYTQL----- 221 (330)
T ss_dssp HHHHHHH-HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE----------ESSCCCCCSSCSSEEEE-----
T ss_pred HHHHhhh-hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE----------CCeeccccccchhEEEE-----
Confidence 4578888 67776664 6669999999999999999999988774311 1000000 000100
Q ss_pred chhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEeccchHHHHHHHHHHHH
Q 007511 368 AQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIKAGHSIHIAGLMRMDV 425 (601)
Q Consensus 368 ~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~~~l~~lir~~~ 425 (601)
+. | +||+||++++++| +|+++++|+-....+..+++...
T Consensus 222 -----~~--g------------gg~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~~~ 262 (330)
T 2pt7_A 222 -----FF--G------------GNITSADCLKSCLRMRPDRIILGELRSSEAYDFYNVLC 262 (330)
T ss_dssp -----EC--B------------TTBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHHHH
T ss_pred -----Ee--C------------CChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHHHh
Confidence 00 0 7999999999999 99999997555455666666554
No 91
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.70 E-value=1.7e-10 Score=112.07 Aligned_cols=50 Identities=20% Similarity=0.158 Sum_probs=32.5
Q ss_pred cccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCc--------cccccceeEeeecCC
Q 007511 303 AGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGD--------GEEKNIVSHLTEAPV 352 (601)
Q Consensus 303 ~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i--------~~~~~~i~~v~qs~~ 352 (601)
.+.+|++++ +|+||||||||+|+|+|+.+...+.. ...++.+++++|++.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~ 74 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPT 74 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHH
Confidence 456777654 99999999999999999984111100 112356788888654
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.69 E-value=1.2e-08 Score=113.26 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred cccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeee-eeeccccchhhhhccCCCcC
Q 007511 303 AGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIV-RVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 303 ~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i-~~~~~l~~~~~llDtpGL~~ 380 (601)
.+.+|.+++ +|+||+|||||+++++|...+. |. +.+.+.++.+.... .... .+. +. ..++. ..|+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----~vi~~~~ee~~~~l-~~~~~~~g--~~-~~~~~-~~g~~~ 345 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----RAILFAYEESRAQL-LRNAYSWG--MD-FEEME-RQNLLK 345 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----CEEEEESSSCHHHH-HHHHHTTS--CC-HHHHH-HTTSEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----CEEEEEEeCCHHHH-HHHHHHcC--CC-HHHHH-hCCCEE
Confidence 445676655 9999999999999999988764 43 12344444431100 1000 000 00 11221 234443
Q ss_pred -cCCccCCCCHHHHHHhcccccc--CCCEEEec------cc-----hHHHHHHHHHHHHHhcCceEEEE
Q 007511 381 -PNQITTRLTREEQKLVNINKEL--KPRTYRIK------AG-----HSIHIAGLMRMDVEESSVESIYV 435 (601)
Q Consensus 381 -~~~~~~~LSgGe~qrv~iaraL--~P~lllLD------~~-----~~~~l~~lir~~~~~~g~tii~~ 435 (601)
.+..+..||+||+|++++++++ +|+++++| .. .+..+..+++..... |.+++.+
T Consensus 346 ~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~-g~tvilv 413 (525)
T 1tf7_A 346 IVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQE-EITGLFT 413 (525)
T ss_dssp ECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHT-TCEEEEE
T ss_pred EEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 5566788999999999999998 99999994 44 566677788776655 6676643
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.58 E-value=5.7e-09 Score=104.05 Aligned_cols=116 Identities=11% Similarity=0.070 Sum_probs=63.9
Q ss_pred cCCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCcc--ccccceeEeeecCC-CCCc-eeeeeeec
Q 007511 290 WGLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDG--EEKNIVSHLTEAPV-PGTT-LGIVRVEG 364 (601)
Q Consensus 290 ~G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~--~~~~~i~~v~qs~~-pgtT-~~~i~~~~ 364 (601)
.|...+++++ ++.+.+|.+ +++|+||||||||+++|+|++ |.+. ..++.++++++..+ +.+| .+++....
T Consensus 9 ~~~~~~l~~i-sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~ 83 (245)
T 2jeo_A 9 SGVDLGTENL-YFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALK 83 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHT
T ss_pred CCCceeecce-eccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhc
Confidence 3556789999 888888864 559999999999999999976 4221 23556888888765 4445 33322110
Q ss_pred c---cc--c---hhhhhccCC-CcC-cCCccCCCCHHHHHHhcccccc--CCCEEEecc
Q 007511 365 V---LP--A---QAKLFDTPG-LLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKA 411 (601)
Q Consensus 365 ~---l~--~---~~~llDtpG-L~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~ 411 (601)
. +. . ...+.+.+. +.. ....+..||+|++||+.++ ++ +|+++++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg 141 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEG 141 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEEC
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeC
Confidence 0 00 0 011122221 222 4556788999999999874 44 889999963
No 94
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.51 E-value=1.2e-08 Score=111.25 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=81.7
Q ss_pred hhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCccc------------------cccceeEeeecCC--CCCc-ee
Q 007511 301 DLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGDGE------------------EKNIVSHLTEAPV--PGTT-LG 358 (601)
Q Consensus 301 ~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i~~------------------~~~~i~~v~qs~~--pgtT-~~ 358 (601)
++.+.+|.++ +||+||||||||+++|+|++.+..|.+.. .++.+++++|... |..+ .+
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e 366 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD 366 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHH
Confidence 4555667655 59999999999999999999888775410 1345788887653 3333 44
Q ss_pred eeeeeccccchhhhhccCCCcCc-CCccCCCCHHHHHHhcccccc---CCC--EEEeccchHHHHHHHHHHHHHhcCceE
Q 007511 359 IVRVEGVLPAQAKLFDTPGLLHP-NQITTRLTREEQKLVNINKEL---KPR--TYRIKAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 359 ~i~~~~~l~~~~~llDtpGL~~~-~~~~~~LSgGe~qrv~iaraL---~P~--lllLD~~~~~~l~~lir~~~~~~g~ti 432 (601)
++.+........-++||.|.... ..+.. ...|++.+++++ .|. +|.+|..........++......+.+.
T Consensus 367 ~l~~a~~~~~DvVLIDTaGrl~~~~~lm~----EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~itg 442 (503)
T 2yhs_A 367 AIQAAKARNIDVLIADTAGRLQNKSHLME----ELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG 442 (503)
T ss_dssp HHHHHHHTTCSEEEECCCCSCCCHHHHHH----HHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCSE
T ss_pred HHHHHHhcCCCEEEEeCCCccchhhhHHH----HHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCCE
Confidence 44332111112457899998652 21222 334677777766 464 445577766666666776655545555
Q ss_pred EEEEE
Q 007511 433 IYVTV 437 (601)
Q Consensus 433 i~~~~ 437 (601)
+.++.
T Consensus 443 vIlTK 447 (503)
T 2yhs_A 443 ITLTK 447 (503)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 54443
No 95
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.49 E-value=1.5e-07 Score=97.73 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.5
Q ss_pred cCCccCCCCHHHHHHhcccccc------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecC
Q 007511 381 PNQITTRLTREEQKLVNINKEL------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASP 441 (601)
Q Consensus 381 ~~~~~~~LSgGe~qrv~iaraL------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~ 441 (601)
.+..+..||+||+||++||++| .|++++| |+.....+..+++... + +.+++.++ .+||+
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-K-HTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-T-TSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEECCHHHHhhCce
Confidence 3456789999999999999986 4789998 7888888899888763 3 55565333 35676
Q ss_pred E--EEeeccee
Q 007511 442 Y--LPLHMGKT 450 (601)
Q Consensus 442 v--l~l~~Gki 450 (601)
+ +.+.+|..
T Consensus 291 ~~~v~~~~g~s 301 (322)
T 1e69_A 291 LHGVTMVNGVS 301 (322)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEEEeCCEE
Confidence 5 66666653
No 96
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.48 E-value=2e-09 Score=116.69 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=83.5
Q ss_pred EeEeecC-CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCcc--------------------cccc
Q 007511 285 SAVKNWG-LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG--------------------EEKN 342 (601)
Q Consensus 285 Sa~kg~G-~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~--------------------~~~~ 342 (601)
+..+.|+ ...+++++ +.+.+|+ +.++|+||||||||+++|+|+..++.|.+. ..++
T Consensus 136 ~v~~~~~tg~~vld~v--l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r 213 (438)
T 2dpy_A 136 PIEHVLDTGVRAINAL--LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRAR 213 (438)
T ss_dssp CCCSBCCCSCHHHHHH--SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHT
T ss_pred ccceecCCCceEEeee--EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCc
Confidence 3345554 35678887 6677775 556999999999999999999999887330 1235
Q ss_pred ceeEeeecCC---CCCc-eeeeeeeccccchhhhhccCC--CcC-cCCccCCCCHHHHHHhccccccCCCEEE-eccchH
Q 007511 343 IVSHLTEAPV---PGTT-LGIVRVEGVLPAQAKLFDTPG--LLH-PNQITTRLTREEQKLVNINKELKPRTYR-IKAGHS 414 (601)
Q Consensus 343 ~i~~v~qs~~---pgtT-~~~i~~~~~l~~~~~llDtpG--L~~-~~~~~~~LSgGe~qrv~iaraL~P~lll-LD~~~~ 414 (601)
.+++++|+.. +..| .+++.+.. +.+..-+ +.. .+ .+..||+|| ||+++| +-+|++.- +|+...
T Consensus 214 ~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~~~~~v~~~ld-~l~~lS~g~-qrvslA-l~~p~~t~glD~~~~ 284 (438)
T 2dpy_A 214 SVVIAAPADVSPLLRMQGAAYATRIA------EDFRDRGQHVLLIMD-SLTRYAMAQ-REIALA-IGEPPATKGYPPSVF 284 (438)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHH------HHHHTTTCEEEEEEE-CHHHHHHHH-HHHHHH-TTCCCCSSSCCTTHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHH------HHHHhCCCCHHHHHH-hHHHHHHHH-HHHHHH-hCCCcccccCCHHHH
Confidence 5788888643 2233 23222111 1111011 000 11 256789999 999999 33888621 399999
Q ss_pred HHHHHHHHHHHH
Q 007511 415 IHIAGLMRMDVE 426 (601)
Q Consensus 415 ~~l~~lir~~~~ 426 (601)
..+..++.....
T Consensus 285 ~~l~~ll~r~~~ 296 (438)
T 2dpy_A 285 AKLPALVERAGN 296 (438)
T ss_dssp HHHHHHHTTCSC
T ss_pred HHHHHHHHHHHh
Confidence 999998877654
No 97
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.44 E-value=1.3e-08 Score=106.21 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=78.1
Q ss_pred cCCcE-EEECCCCCchhHHHHHHhccccCCCCCccc----------------cccc--eeEeeecCC--CCCc-eeeeee
Q 007511 305 KRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGDGE----------------EKNI--VSHLTEAPV--PGTT-LGIVRV 362 (601)
Q Consensus 305 ~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~----------------~~~~--i~~v~qs~~--pgtT-~~~i~~ 362 (601)
.+|.+ +++|+||||||||++.|+|++.+..|.+.. .++. +.+++|... |..+ .+++..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45655 559999999999999999999998885410 0122 335555433 3334 444432
Q ss_pred eccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEeccchHHHHHHHHHHHHHhcCceEEEEEE
Q 007511 363 EGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKAGHSIHIAGLMRMDVEESSVESIYVTV 437 (601)
Q Consensus 363 ~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~~~l~~lir~~~~~~g~tii~~~~ 437 (601)
.........++|++|+.+ ......+|+ .+++++ ++.++.||......+...++......+.+.+.++.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111111134689999865 333333333 366676 55677789888888888888776665666655544
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.43 E-value=1.4e-08 Score=104.67 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=46.0
Q ss_pred EeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhcc-ccCCCCCccc---------cccceeEeeecCCCC
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS-VDAGRGGDGE---------EKNIVSHLTEAPVPG 354 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~-~~~~~G~i~~---------~~~~i~~v~qs~~pg 354 (601)
++.+.|+...+++++ ++ .+++||+||||||||||+|+|. ..+..| +.. ....+++++|...
T Consensus 3 ~l~~~~~~~~~l~~~-~~-----~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~-- 73 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGF-EF-----TLMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG-- 73 (301)
T ss_dssp ----------------CE-----EEEEEEETTSSHHHHHHHHHC-------------------------CEEEEC-----
T ss_pred CCcceECCEEEEcCC-CE-----EEEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC--
Confidence 345566767777777 44 4688999999999999999997 666666 210 0122333333211
Q ss_pred CceeeeeeeccccchhhhhccCCC-------cC-----------cCCccCCCCHHHHHHhccccccCCCEEEe
Q 007511 355 TTLGIVRVEGVLPAQAKLFDTPGL-------LH-----------PNQITTRLTREEQKLVNINKELKPRTYRI 409 (601)
Q Consensus 355 tT~~~i~~~~~l~~~~~llDtpGL-------~~-----------~~~~~~~LSgGe~qrv~iaraL~P~lllL 409 (601)
. .....+.|++|+ .. .++++..+|+|++||+.+++++. ++++
T Consensus 74 ~-----------~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~--ll~l 133 (301)
T 2qnr_A 74 V-----------KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC--CFYF 133 (301)
T ss_dssp C-----------CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE--EEEE
T ss_pred c-----------ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh--eeee
Confidence 0 001234444444 11 12567789999999999999873 4444
No 99
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.41 E-value=1.4e-08 Score=107.01 Aligned_cols=84 Identities=29% Similarity=0.264 Sum_probs=52.6
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~~~~~~~ 386 (601)
.++++|.+|||||||+|.|+|... .....|++|.+........ .....++||||+.. ....
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~ 230 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAKP----------------EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLD--RPIS 230 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSCC----------------EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSS--SCST
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC----------------ccCCCCCeeeceeEEEEEecCceEEEEeCCCccc--cchh
Confidence 577799999999999999997531 1122345553322111111 12357899999865 3456
Q ss_pred CCCHHHHHHhcccccc--CCCEEEec
Q 007511 387 RLTREEQKLVNINKEL--KPRTYRIK 410 (601)
Q Consensus 387 ~LSgGe~qrv~iaraL--~P~lllLD 410 (601)
.++++++|.+. +.+. ++-++++|
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D 255 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFD 255 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEEC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEe
Confidence 78999988775 3333 44455566
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.41 E-value=1.2e-07 Score=110.82 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=73.8
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-CCCCccccccceeEeeecCCCCCceeeeeeeccccch
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~ 369 (601)
...+++++ ++.+.+|++++ +||||+||||||+++++.... ..| .++ |.... .+.. .
T Consensus 659 ~~~V~ndv-sl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g---------~~v-----pa~~~-~i~~------~ 716 (918)
T 3thx_B 659 DQYVPNNT-DLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG---------SYV-----PAEEA-TIGI------V 716 (918)
T ss_dssp SSSCCEEE-EECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT---------CCB-----SSSEE-EEEC------C
T ss_pred Cceecccc-cccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC---------ccc-----cchhh-hhhH------H
Confidence 34567777 77777777655 999999999999998764311 001 111 21111 0110 1
Q ss_pred hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-CCCEEEe-------ccchHHHHH-HHHHHHHHhcCceEEEE
Q 007511 370 AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-KPRTYRI-------KAGHSIHIA-GLMRMDVEESSVESIYV 435 (601)
Q Consensus 370 ~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-~P~lllL-------D~~~~~~l~-~lir~~~~~~g~tii~~ 435 (601)
..++...|+.+ ..+..+.+|+|++|++.++++. +|++++| |+.....+. .+++.+..+.|.+++++
T Consensus 717 d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~v 792 (918)
T 3thx_B 717 DGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFV 792 (918)
T ss_dssp SEEEEEC----------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 23455556554 4455778999999999999888 9999999 566666665 66766655446665443
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.33 E-value=6.9e-07 Score=85.75 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=64.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecCCCCCceeeeeeeccccchhhhhccCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPG 377 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpG 377 (601)
.++++|+||||||||+++|+|++. +.| +. ..++.+++++|.. .+. ..++.. +. +....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~-~g~-~~~l~~---~~-----~~~~~ 70 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL-SGT-RGPLSR---VG-----LEPPP 70 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET-TSC-EEEEEE---CC-----CCCCS
T ss_pred EEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec-ccc-eehhhc---cc-----ccCCc
Confidence 467799999999999999999988 777 42 2345567777765 221 222211 00 00000
Q ss_pred Cc---CcCCccCCCCHHHHHHh-cccc---cc--CCCEEEeccc--h---HHHHHHHHHHHHHh
Q 007511 378 LL---HPNQITTRLTREEQKLV-NINK---EL--KPRTYRIKAG--H---SIHIAGLMRMDVEE 427 (601)
Q Consensus 378 L~---~~~~~~~~LSgGe~qrv-~iar---aL--~P~lllLD~~--~---~~~l~~lir~~~~~ 427 (601)
.. ...++...+|+||++++ ++++ |+ +|++++||.. . ...+...+......
T Consensus 71 ~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~ 134 (189)
T 2i3b_A 71 GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST 134 (189)
T ss_dssp SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence 00 12334556899999887 4444 34 8999999761 1 12345555555544
No 102
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.32 E-value=2.1e-07 Score=109.25 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=63.0
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhcccc-CCCCCccccccceeEeeecCCCCCceeeeeeeccccchhh
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVD-AGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAK 371 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~-~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~ 371 (601)
.+++++ ++....|++++ +||||+||||||+++++..- +..| .+++... ..+.. ...
T Consensus 650 ~v~ndi-sl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G---------~~vpa~~------~~~~~------~d~ 707 (934)
T 3thx_A 650 FIPNDV-YFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIG---------CFVPCES------AEVSI------VDC 707 (934)
T ss_dssp CCCEEE-EEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHT---------CCBSEEE------EEEEC------CSE
T ss_pred eecccc-eeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcC---------Ccccccc------ccchH------HHH
Confidence 456677 77777777655 99999999999999943210 1111 1222110 00100 123
Q ss_pred hhccCCCcCcCCccCCCCHHHHHHh---cccccc-CCCEEEe-------ccchHHHH-HHHHHHHHHhcCceEEEEEE
Q 007511 372 LFDTPGLLHPNQITTRLTREEQKLV---NINKEL-KPRTYRI-------KAGHSIHI-AGLMRMDVEESSVESIYVTV 437 (601)
Q Consensus 372 llDtpGL~~~~~~~~~LSgGe~qrv---~iaraL-~P~lllL-------D~~~~~~l-~~lir~~~~~~g~tii~~~~ 437 (601)
++...|+.+ .....+|+++.++. .+.+++ +|++++| |+.....+ ..++..+..+.|.+++++++
T Consensus 708 i~~~ig~~d--~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH 783 (934)
T 3thx_A 708 ILARVGAGD--SQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH 783 (934)
T ss_dssp EEEECC-----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHhcCchh--hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 455556543 22334555554444 444444 8999999 55566666 56666665544666655443
No 103
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.31 E-value=6.5e-07 Score=91.42 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=34.7
Q ss_pred cccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccCCCC
Q 007511 294 SLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
..|+++ .+.+.+|++++ +|+||+|||||++.|+|...+..|
T Consensus 23 ~~Ld~i-~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDK-TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHH-HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHH-hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 357787 57788887665 999999999999999999988766
No 104
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.31 E-value=1.5e-08 Score=106.64 Aligned_cols=159 Identities=16% Similarity=0.079 Sum_probs=87.2
Q ss_pred EeecC-CccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCccc-------c------------cccee
Q 007511 287 VKNWG-LKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGE-------E------------KNIVS 345 (601)
Q Consensus 287 ~kg~G-~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~-------~------------~~~i~ 345 (601)
.+.|+ ...+++.+ +.+.+|+ +.++|+||||||||+++|+|+..++.|.+.. . .+.+.
T Consensus 52 ~~~~~tg~~ald~l--l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~ 129 (347)
T 2obl_A 52 DQPFILGVRAIDGL--LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVL 129 (347)
T ss_dssp CSEECCSCHHHHHH--SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEE
T ss_pred ceecCCCCEEEEee--eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEE
Confidence 34454 34577777 6667775 5559999999999999999999988773210 0 01122
Q ss_pred EeeecCCCCCceeeeeeeccccchhhhhccCCCcC--cCCccCCCCHHHHHHhccccccCCCE-EEeccchHHHHHHHHH
Q 007511 346 HLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH--PNQITTRLTREEQKLVNINKELKPRT-YRIKAGHSIHIAGLMR 422 (601)
Q Consensus 346 ~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL~P~l-llLD~~~~~~l~~lir 422 (601)
++.++..|... .+..........+.+...|-.- .-..+..||+|| |++++| .-+|++ -=+|+.....+..++.
T Consensus 130 ~~~~~~~~~~~--r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp~~~~~l~~lle 205 (347)
T 2obl_A 130 VVTTSDRPALE--RMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDVRGGFPPSVFSSLPKLLE 205 (347)
T ss_dssp EEECTTSCHHH--HHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCCBTTBCHHHHHHHHHHHT
T ss_pred EEECCCCCHHH--HHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCcccCCCHHHHHHHHHHHH
Confidence 22222221100 0000000000011111111100 013467899999 899999 338876 2349988889888888
Q ss_pred HHHH-hcCc-----eEEE-----EEEeecCEEEeecceec
Q 007511 423 MDVE-ESSV-----ESIY-----VTVWASPYLPLHMGKTE 451 (601)
Q Consensus 423 ~~~~-~~g~-----tii~-----~~~~ad~vl~l~~Gki~ 451 (601)
.... +.|. +++. -..+||+++.+.+|++.
T Consensus 206 r~~~~~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 206 RAGPAPKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIV 245 (347)
T ss_dssp TCEECSSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEE
T ss_pred HHhCCCCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEE
Confidence 7654 3343 2221 12345666666666664
No 105
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.24 E-value=4.9e-07 Score=107.29 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=73.3
Q ss_pred eEeec-CCccccchhhhhcccC-------CcEEE-ECCCCCchhHHHHHHhccccCCCCCcccccccee-EeeecCCCCC
Q 007511 286 AVKNW-GLKSLIDDVVDLAGKR-------GNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVS-HLTEAPVPGT 355 (601)
Q Consensus 286 a~kg~-G~~~LL~~I~~l~~~~-------G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~-~v~qs~~pgt 355 (601)
+.+.+ +...+++++ ++.+.. |++++ +||||+||||||++| |+..+. ..+| +|+|... .+
T Consensus 761 l~~~~~~~~~v~ndi-~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------aqiG~~Vpq~~~-~l 829 (1022)
T 2o8b_B 761 ITKTFFGDDFIPNDI-LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------AQMGCYVPAEVC-RL 829 (1022)
T ss_dssp ------CCCCCCEEE-EESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------HTTTCCEESSEE-EE
T ss_pred EEEEecCCceEeeee-eeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------hheeEEeccCcC-CC
Confidence 45555 556788888 777665 66554 999999999999999 887531 2334 7877642 12
Q ss_pred c-eeeeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEecc-------ch-HHHHHHHHHH
Q 007511 356 T-LGIVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKA-------GH-SIHIAGLMRM 423 (601)
Q Consensus 356 T-~~~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~-------~~-~~~l~~lir~ 423 (601)
+ .+.+ +...|+.+ ..+..+.+++++++ +++++++ +|.+++||+ .. ...+..+++.
T Consensus 830 ~v~d~I------------~~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~ 896 (1022)
T 2o8b_B 830 TPIDRV------------FTRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKE 896 (1022)
T ss_dssp CCCSBE------------EEECC---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHH------------HHHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence 2 2222 22334433 22334567777665 7777776 899999943 33 2345677777
Q ss_pred HHHhcCceEEEEE
Q 007511 424 DVEESSVESIYVT 436 (601)
Q Consensus 424 ~~~~~g~tii~~~ 436 (601)
+..+.+.++++++
T Consensus 897 L~~~~g~~vl~~T 909 (1022)
T 2o8b_B 897 LAETIKCRTLFST 909 (1022)
T ss_dssp HHHTSCCEEEEEC
T ss_pred HHhcCCCEEEEEe
Confidence 6654355554443
No 106
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.23 E-value=2e-06 Score=89.96 Aligned_cols=64 Identities=13% Similarity=0.080 Sum_probs=48.1
Q ss_pred CCccCCCCHHHHH------Hhcccccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------Eeec
Q 007511 382 NQITTRLTREEQK------LVNINKEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWAS 440 (601)
Q Consensus 382 ~~~~~~LSgGe~q------rv~iaraL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad 440 (601)
++.+..|||||+| |+++|+++ +|++++| |+..+..+..+++....+ +.+++.++ .+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhCC
Confidence 5568899999999 56677777 8999999 788888888888877655 55666433 3567
Q ss_pred CEEEee
Q 007511 441 PYLPLH 446 (601)
Q Consensus 441 ~vl~l~ 446 (601)
+++.++
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776664
No 107
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.21 E-value=4e-07 Score=97.94 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=70.8
Q ss_pred EEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCC--CccccccceeEeeecCCCCCc-e
Q 007511 281 LHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG--GDGEEKNIVSHLTEAPVPGTT-L 357 (601)
Q Consensus 281 V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G--~i~~~~~~i~~v~qs~~pgtT-~ 357 (601)
+.+.++.+.|+...+++++ ++ .+++||+||||||||||+|+|...+..| +... . .+.++ .
T Consensus 12 l~~~~l~~~y~~~~vl~~v-sf-----~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~----------~-~~~t~~~ 74 (418)
T 2qag_C 12 VGFANLPNQVYRKSVKRGF-EF-----TLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSH----------R-IKKTVQV 74 (418)
T ss_dssp ---CCCCCCTTTTTCC-CC-CE-----EEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC----------------CCEE
T ss_pred EEEEecceeECCEEEecCC-CE-----EEEEECCCCCcHHHHHHHHhCCCCCCCCCCCccc----------C-Cccceee
Confidence 4455667788877788887 54 3688999999999999999998865443 1100 0 01111 1
Q ss_pred eeeeeecc---ccchhhhhccCCCcCc-C-----C-----ccCCCCHHHHHHhcccccc--CCC---EEEec-cc-hHHH
Q 007511 358 GIVRVEGV---LPAQAKLFDTPGLLHP-N-----Q-----ITTRLTREEQKLVNINKEL--KPR---TYRIK-AG-HSIH 416 (601)
Q Consensus 358 ~~i~~~~~---l~~~~~llDtpGL~~~-~-----~-----~~~~LSgGe~qrv~iaraL--~P~---lllLD-~~-~~~~ 416 (601)
..+.+... ......+.|++|+... + + .-..++.+++|++.|++++ +|+ ++++| |. ..+.
T Consensus 75 ~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~ 154 (418)
T 2qag_C 75 EQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK 154 (418)
T ss_dssp EEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCC
T ss_pred eeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCC
Confidence 11111100 0011346677776431 0 0 0113455667889999998 788 56664 32 1111
Q ss_pred H--HHHHHHHHHhcCceEEEEEEeecC
Q 007511 417 I--AGLMRMDVEESSVESIYVTVWASP 441 (601)
Q Consensus 417 l--~~lir~~~~~~g~tii~~~~~ad~ 441 (601)
- ..+++.+. . +..++.+..-+|.
T Consensus 155 ~~d~~~lk~L~-~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 155 PLDIEFMKRLH-E-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHHHHHHT-T-TSEEEEEEESTTS
T ss_pred HHHHHHHHHHh-c-cCcEEEEEEcccC
Confidence 1 13444333 2 5556666666664
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.20 E-value=1.2e-06 Score=88.47 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=33.0
Q ss_pred cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCC-CCCc
Q 007511 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG-RGGD 337 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~-~G~i 337 (601)
.+++++ + +.+|. ++++|+||||||||+++|+|++.+. .|.+
T Consensus 15 ~vl~~i-~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I 57 (261)
T 2eyu_A 15 DKVLEL-C--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI 57 (261)
T ss_dssp THHHHG-G--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHH-h--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence 577777 3 45665 5669999999999999999999887 7754
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.20 E-value=1.4e-07 Score=91.18 Aligned_cols=94 Identities=14% Similarity=-0.009 Sum_probs=56.2
Q ss_pred CCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC----CCCc-eeeeeeeccccc------hhhhh
Q 007511 306 RGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV----PGTT-LGIVRVEGVLPA------QAKLF 373 (601)
Q Consensus 306 ~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~----pgtT-~~~i~~~~~l~~------~~~ll 373 (601)
+|. ++++|+||||||||+++|+|++.+ .+++++|... +..+ .++..+...... ..+++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHA 74 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHH
Confidence 444 566999999999999999998743 4678887764 1222 122211111010 12344
Q ss_pred ccCCCcC-cCCccCCCCHHHH----HHhcccccc--CCCEEEe
Q 007511 374 DTPGLLH-PNQITTRLTREEQ----KLVNINKEL--KPRTYRI 409 (601)
Q Consensus 374 DtpGL~~-~~~~~~~LSgGe~----qrv~iaraL--~P~lllL 409 (601)
+..++.. ...+...+|+|++ |++.+++++ +|.++++
T Consensus 75 ~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~ 117 (211)
T 3asz_A 75 QALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLY 117 (211)
T ss_dssp HHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTS
T ss_pred HHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhcc
Confidence 5555543 3335667888864 677787776 6665554
No 110
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.18 E-value=3.7e-07 Score=85.11 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=39.4
Q ss_pred eecCCccccchhhhhcccCCcEE-EECCCCCchhHHHHHHhccccCCCCCc
Q 007511 288 KNWGLKSLIDDVVDLAGKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 288 kg~G~~~LL~~I~~l~~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
+.||...+++.+ ++.+.+|+++ ++|+||||||||+++|+|+. |..|.+
T Consensus 15 ~~~g~~~~l~~v-sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V 63 (158)
T 1htw_A 15 LRFGKKFAEILL-KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV 63 (158)
T ss_dssp HHHHHHHHHHHH-HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred HHHHHHHHHhcc-ccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence 445555677788 8888999765 59999999999999999999 888854
No 111
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.15 E-value=2.3e-06 Score=86.71 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=70.2
Q ss_pred cCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccc-----cccceeEeeecCCCCCceeee-eeeccccc--hhhhhcc
Q 007511 305 KRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGE-----EKNIVSHLTEAPVPGTTLGIV-RVEGVLPA--QAKLFDT 375 (601)
Q Consensus 305 ~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~-----~~~~i~~v~qs~~pgtT~~~i-~~~~~l~~--~~~llDt 375 (601)
.+|.+++ +|+||+|||||++.|++.... |.+.. ....+.|++...........+ .+...+.. ...+++.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~g~~~~~~~~~~~~~~ 105 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADG 105 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCHHHHHHHHHHHHhhcChhhhhhccCc
Confidence 4566554 999999999999999986542 32100 012334443222110000000 00000100 1233555
Q ss_pred CCCcC-cCCccCCCCHHHHHHhcccccc--CCCEEEeccchH------------HHHHHHHHHHHHhcCceEEEEEEe
Q 007511 376 PGLLH-PNQITTRLTREEQKLVNINKEL--KPRTYRIKAGHS------------IHIAGLMRMDVEESSVESIYVTVW 438 (601)
Q Consensus 376 pGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~------------~~l~~lir~~~~~~g~tii~~~~~ 438 (601)
+++.. .++.+..||+|+++++. ++ +|+++++|+-.. ..+...++.+..+.+.+++.+.+.
T Consensus 106 l~l~~~~~~~~~~ls~g~~~~i~---~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 106 LLIQPLIGSLPNIMAPEWFDGLK---RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 180 (279)
T ss_dssp EEECCCTTSCCCTTSHHHHHHHH---HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred eEEeecCCCCcccCCHHHHHHHH---HhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 66655 45678899999988763 33 899999943322 455566666655557777655443
No 112
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.10 E-value=2.2e-06 Score=92.03 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=68.2
Q ss_pred hhcccCC-cEEEECCCCCchhHHHHHHhccccCCCCC-ccccccceeEeeecCCCCCc-eeeeeee------ccccc---
Q 007511 301 DLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGRGG-DGEEKNIVSHLTEAPVPGTT-LGIVRVE------GVLPA--- 368 (601)
Q Consensus 301 ~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~G~-i~~~~~~i~~v~qs~~pgtT-~~~i~~~------~~l~~--- 368 (601)
++.+..+ .+++||+||||||||||+|++....-.+. .......++++.+......+ .+...+. ..+..
T Consensus 151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl 230 (416)
T 1udx_A 151 RLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFL 230 (416)
T ss_dssp EEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHH
T ss_pred eeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHH
Confidence 4555555 57789999999999999999874311110 01112234555443211011 1110000 00000
Q ss_pred -----hhhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEe---ccchHHHHHHHHHHHHHhcCceE
Q 007511 369 -----QAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRI---KAGHSIHIAGLMRMDVEESSVES 432 (601)
Q Consensus 369 -----~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllL---D~~~~~~l~~lir~~~~~~g~ti 432 (601)
...++...++. +..+..||++++|++.++++| .|.++++ |..... ....+.....+.+.++
T Consensus 231 ~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~-~~~~l~~~l~~~g~~v 301 (416)
T 1udx_A 231 RHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEE-AVKALADALAREGLAV 301 (416)
T ss_dssp HHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHH-HHHHHHHHHHTTTSCE
T ss_pred HHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHH-HHHHHHHHHHhcCCeE
Confidence 01122222332 456678999999999999988 8999888 665553 3333333333334343
No 113
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.09 E-value=3.2e-06 Score=81.00 Aligned_cols=48 Identities=27% Similarity=0.259 Sum_probs=27.9
Q ss_pred EeEeecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccc-----cCCCCC
Q 007511 285 SAVKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSV-----DAGRGG 336 (601)
Q Consensus 285 Sa~kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~-----~~~~G~ 336 (601)
++.+.|+. .++++ +.+..|. ++++|+||||||||+|+|+|.. .+..|.
T Consensus 8 ~~~~~~~~-~~l~~---~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~ 61 (210)
T 1pui_A 8 QTHFVMSA-PDIRH---LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGR 61 (210)
T ss_dssp ---CEEEE-SSGGG---SSCSCSEEEEEEECTTSSHHHHHTTTCCC------------
T ss_pred hhhheeec-CCHhH---CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcc
Confidence 34444542 34444 4556664 6779999999999999999987 566664
No 114
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.07 E-value=8.6e-08 Score=90.62 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.7
Q ss_pred cEEEECCCCCchhHHHHHHhccccCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAG 333 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~ 333 (601)
.++++|+||||||||++.|+|++.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 46779999999999999999999876
No 115
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.05 E-value=5.6e-08 Score=92.26 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=58.2
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhccccCCCCCcc----------ccccceeEeeecCCCCCc-eeeeeeeccc---cch
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDG----------EEKNIVSHLTEAPVPGTT-LGIVRVEGVL---PAQ 369 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~----------~~~~~i~~v~qs~~pgtT-~~~i~~~~~l---~~~ 369 (601)
.+|. ++++|+||||||||+++|+|. ++.|.+. ..+..+++++|...+..+ .+++...... .+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 84 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY 84 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCC
Confidence 4565 455999999999999999997 4445220 001112333332211112 2222111000 000
Q ss_pred hhhhc----cCCCcC-c--CCccCCCCHHHHHHhcccccc--CCCEEEeccchHHHHHH
Q 007511 370 AKLFD----TPGLLH-P--NQITTRLTREEQKLVNINKEL--KPRTYRIKAGHSIHIAG 419 (601)
Q Consensus 370 ~~llD----tpGL~~-~--~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~~~~~l~~ 419 (601)
..++| ..++.. . +..+..+|+|++|++.++|++ +|+++ +|+.....+..
T Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l-ld~~~~~~~~~ 142 (191)
T 1zp6_A 85 FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL-SDPLVVADLHS 142 (191)
T ss_dssp EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC-CCHHHHHHHHH
T ss_pred eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc-CCHHHHHHHHH
Confidence 11112 122221 1 334567999999999999998 66654 56654444333
No 116
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.99 E-value=5.4e-06 Score=95.50 Aligned_cols=104 Identities=15% Similarity=0.134 Sum_probs=61.6
Q ss_pred EEEEEeEeec---CCccccchhhhhcccCCcE-EEECCCCCchhHHHHHHhcccc-CCCCCccc-cccceeEeeecCCCC
Q 007511 281 LHFVSAVKNW---GLKSLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVD-AGRGGDGE-EKNIVSHLTEAPVPG 354 (601)
Q Consensus 281 V~lvSa~kg~---G~~~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~-~~~G~i~~-~~~~i~~v~qs~~pg 354 (601)
+.+..+.+-. +...+++++ ++. |++ +++|+||+||||||++|+|+.. +..|.... .+..++++.
T Consensus 551 i~i~~~rHP~le~~~~~vl~di-sl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~------ 620 (765)
T 1ewq_A 551 LQIRAGRHPVVERRTEFVPNDL-EMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFD------ 620 (765)
T ss_dssp EEEEEECCTTGGGTSCCCCEEE-EES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCS------
T ss_pred EEEEEeECceEccCCceEeeec-cCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHH------
Confidence 4444444333 334566677 555 554 5599999999999999999864 55664211 011111111
Q ss_pred CceeeeeeeccccchhhhhccCCCcCcCCccCCCCHHHHHHhcccccc----CCCEEEeccc
Q 007511 355 TTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTRLTREEQKLVNINKEL----KPRTYRIKAG 412 (601)
Q Consensus 355 tT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL----~P~lllLD~~ 412 (601)
.++...|+. +.....+|+++++++.+++++ +|++++||.-
T Consensus 621 ----------------~i~~~~~~~--d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 621 ----------------GIYTRIGAS--DDLAGGKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp ----------------EEEEECCC--------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred ----------------HhhccCCHH--HHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 122222332 223345789999999998887 8999999764
No 117
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.98 E-value=3.1e-06 Score=82.21 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=23.6
Q ss_pred ccCCcEEE-ECCCCCchhHHHHHHhccccC
Q 007511 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 304 ~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~ 332 (601)
+.+|++++ +|+||||||||+++|+|...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45676555 999999999999999996544
No 118
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.95 E-value=3.2e-06 Score=95.30 Aligned_cols=30 Identities=33% Similarity=0.453 Sum_probs=22.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccC-CCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA-GRGGD 337 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~-~~G~i 337 (601)
.+++||+|||||||||++|+|+..| ++|.+
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v 77 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIV 77 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence 4788999999999999999999888 68854
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.95 E-value=8.5e-06 Score=78.97 Aligned_cols=32 Identities=13% Similarity=0.021 Sum_probs=25.2
Q ss_pred ccCCcEE-EECCCCCchhHHHHHHhccccCCCC
Q 007511 304 GKRGNVW-AIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 304 ~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
+.+|.++ ++|+||+|||||++.|++...+..|
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 4567654 4999999999999999987755444
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.92 E-value=1.2e-05 Score=79.10 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=24.1
Q ss_pred ccCCcEEE-ECCCCCchhHHHHHHh--ccccCCCC
Q 007511 304 GKRGNVWA-IGAQNAGKSTLLNAIA--KSVDAGRG 335 (601)
Q Consensus 304 ~~~G~v~i-vG~nGaGKSTLLn~L~--g~~~~~~G 335 (601)
+.+|++++ +|+||||||||+++|+ |...+..|
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~ 61 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEP 61 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCe
Confidence 46676555 9999999999999999 65334333
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.91 E-value=5.4e-06 Score=89.04 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=47.4
Q ss_pred EeecCCccccchhhhhcccCCcE---EEECCCCCchhHHHHHHhccccCC--CC--CccccccceeEeeecCC--CCCc-
Q 007511 287 VKNWGLKSLIDDVVDLAGKRGNV---WAIGAQNAGKSTLLNAIAKSVDAG--RG--GDGEEKNIVSHLTEAPV--PGTT- 356 (601)
Q Consensus 287 ~kg~G~~~LL~~I~~l~~~~G~v---~ivG~nGaGKSTLLn~L~g~~~~~--~G--~i~~~~~~i~~v~qs~~--pgtT- 356 (601)
.++|+... ++++ ++.+.+|.+ ++||+||||||||||+|+|+.-.. .+ .....++.+++++|... +.+|
T Consensus 22 ~~~y~~~~-L~~v-sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 22 HVGFDSLP-DQLV-NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp CC-CC--C-HHHH-HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEE
T ss_pred EEEECCee-cCCC-ceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccch
Confidence 56777666 8888 889999975 669999999999999999985210 01 01122346788888754 4455
Q ss_pred eeeeeee
Q 007511 357 LGIVRVE 363 (601)
Q Consensus 357 ~~~i~~~ 363 (601)
.+++.+.
T Consensus 100 ~D~~~~g 106 (427)
T 2qag_B 100 VSTVGFG 106 (427)
T ss_dssp EEEECCC
T ss_pred hhhhhhh
Confidence 6666553
No 122
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.89 E-value=5.5e-06 Score=87.27 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=25.8
Q ss_pred cCCcEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 305 ~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.+|.+.++|+||||||||+++|+|++.+..|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~ 152 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCC
Confidence 3445677999999999999999999987643
No 123
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.88 E-value=5.6e-06 Score=77.80 Aligned_cols=110 Identities=20% Similarity=0.192 Sum_probs=60.3
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+... ...+..++.... .+. . ....|+++|+||+|+............| ++..
T Consensus 85 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~-----~~~-~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~ 150 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDT--FVKLDNWLNELE-----TYC-T--RNDIVNMLVGNKIDKENREVDRNEGLKF----ARKH 150 (195)
T ss_dssp HTTCCEEEEEEETTCHHH--HHTHHHHHHHHT-----TCC-S--CSCCEEEEEEECTTSSSCCSCHHHHHHH----HHHT
T ss_pred hccCCEEEEEEECcCHHH--HHHHHHHHHHHH-----Hhc-C--cCCCcEEEEEECCcCcccccCHHHHHHH----HHHc
Confidence 456899999999987531 122333332210 000 0 0124899999999996554443444444 3333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
+ ..++.+|+..+.|...+++.+..........+--+.+|+||||
T Consensus 151 ~----~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~~~~n~gkSs 194 (195)
T 1x3s_A 151 S----MLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPSS 194 (195)
T ss_dssp T----CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGTCC---------
T ss_pred C----CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhhcccccCCCCCC
Confidence 4 2577899999999988888875544333334445777999997
No 124
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.85 E-value=1.1e-07 Score=96.55 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=61.4
Q ss_pred ccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCC----C-Cc-----cccccceeEeeecC---CCCCc-ee
Q 007511 293 KSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGR----G-GD-----GEEKNIVSHLTEAP---VPGTT-LG 358 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~----G-~i-----~~~~~~i~~v~qs~---~pgtT-~~ 358 (601)
..+++.+ .+...+| +.++|+||+|||||+++|+|...+.. | .+ .+..+.++++++.. .|..+ .+
T Consensus 33 ~~~l~~~-~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 33 PDQFKAL-GLVTPAG-VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp HHHHHHT-TCCCCSE-EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHc-CCCCCCe-EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 3466666 6666777 88899999999999999999874310 0 00 11122345555542 24433 44
Q ss_pred eeeeeccccchhhhhccCCCcC-cCCccCCCCHHHHHHhcccccc--CCCEE
Q 007511 359 IVRVEGVLPAQAKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL--KPRTY 407 (601)
Q Consensus 359 ~i~~~~~l~~~~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL--~P~ll 407 (601)
++.......+.. +.-.+.. .++.+..|||||+|++.++.++ +|+++
T Consensus 111 eid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 111 EVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp TCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 433211110000 0000111 3456677899999998888887 66643
No 125
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.83 E-value=1.4e-05 Score=92.53 Aligned_cols=121 Identities=11% Similarity=0.084 Sum_probs=63.8
Q ss_pred CccccchhhhhcccCCcEEE-ECCCCCchhHHHHHHhccccC-CCCCccccccceeEeeecCCCCCceeeeeeeccccch
Q 007511 292 LKSLIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSVDA-GRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQ 369 (601)
Q Consensus 292 ~~~LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~-~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~ 369 (601)
...+++++ ++. ..|++++ +|+||+||||||++|+|.... ..|. ++++. . ..+.+ .
T Consensus 594 ~~~vlndi-sl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~---------~vpa~-----~-~~i~~---~--- 650 (800)
T 1wb9_A 594 EPFIANPL-NLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS---------YVPAQ-----K-VEIGP---I--- 650 (800)
T ss_dssp SCCCCEEE-EEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC---------CBSSS-----E-EEECC---C---
T ss_pred Cceeeecc-ccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc---------ccchh-----c-cccee---H---
Confidence 34567777 666 5666555 999999999999999987422 2231 22211 0 00000 0
Q ss_pred hhhhccCCCcC-cCCccCCCCHHHHHHhcccccc-CCCEEEecc-------chHHHH-HHHHHHHHHhcCceEEEE
Q 007511 370 AKLFDTPGLLH-PNQITTRLTREEQKLVNINKEL-KPRTYRIKA-------GHSIHI-AGLMRMDVEESSVESIYV 435 (601)
Q Consensus 370 ~~llDtpGL~~-~~~~~~~LSgGe~qrv~iaraL-~P~lllLD~-------~~~~~l-~~lir~~~~~~g~tii~~ 435 (601)
..++...|..+ .....+.+|.++++...+...+ +|++++||. .....+ ..++..+..+.+.+++++
T Consensus 651 ~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~ 726 (800)
T 1wb9_A 651 DRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFA 726 (800)
T ss_dssp CEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEE
Confidence 01222233322 2222345778887766665555 899999943 344443 567766655335555443
No 126
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.83 E-value=5e-05 Score=79.80 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=26.6
Q ss_pred cccchhhhhcccCCcEEEECCCCCchhHHHHHHhcc--ccCCCC
Q 007511 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS--VDAGRG 335 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~--~~~~~G 335 (601)
..++.+ ++... .|++||.+|||||||||+|+|. .+...|
T Consensus 25 ~~l~~i-~~~lp--~I~vvG~~~sGKSSLln~l~g~~~lp~~~~ 65 (360)
T 3t34_A 25 SALPTL-WDSLP--AIAVVGGQSSGKSSVLESIVGKDFLPRGSG 65 (360)
T ss_dssp CCC-----CCCC--EEEEECBTTSSHHHHHHHHHTSCCSCCCSS
T ss_pred cccccc-cccCC--EEEEECCCCCcHHHHHHHHhCCCcCCCCCC
Confidence 455555 44444 7889999999999999999994 444444
No 127
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.80 E-value=5.3e-05 Score=76.57 Aligned_cols=114 Identities=20% Similarity=0.141 Sum_probs=62.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~~~~~~~ 386 (601)
.|+++|.+|||||||+|.|+|.. ...+.+||+|.+........ .....++|+||.........
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~----------------~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 68 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR----------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISS 68 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC----------------EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccc
Confidence 57889999999999999999743 12345588886553332222 22357899999976332111
Q ss_pred CCCHHHHHHhcccc-cc-CCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEeec
Q 007511 387 RLTREEQKLVNINK-EL-KPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVWAS 440 (601)
Q Consensus 387 ~LSgGe~qrv~iar-aL-~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~ad 440 (601)
..+.++. +.-.. .. +++++++ |.........+....... +..++.+..-+|
T Consensus 69 ~~~~~e~--i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-~~p~ivv~NK~D 123 (274)
T 3i8s_A 69 QTSLDEQ--IACHYILSGDADLLINVVDASNLERNLYLTLQLLEL-GIPCIVALNMLD 123 (274)
T ss_dssp -CCHHHH--HHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-TCCEEEEEECHH
T ss_pred cCCHHHH--HHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc-CCCEEEEEECcc
Confidence 1233332 11111 11 5665554 766655555555444433 444444444444
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.80 E-value=2.2e-06 Score=88.86 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=68.2
Q ss_pred EEEECCCCCchhHHHHHHhccc--------cCCCCCccc---------------------------cccceeEe---eec
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSV--------DAGRGGDGE---------------------------EKNIVSHL---TEA 350 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~--------~~~~G~i~~---------------------------~~~~i~~v---~qs 350 (601)
+.++|+||||||||||.|+|.. .++.|.+.. ..+.++++ +|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~ 86 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDK 86 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhc
Confidence 4559999999999999999986 667775410 01224444 344
Q ss_pred CC--CCCc-eeeeeeec--c----c--cch-------hhhhccCCCcCcCCccCCCCHHHHHHhcccccc--CCCEEEec
Q 007511 351 PV--PGTT-LGIVRVEG--V----L--PAQ-------AKLFDTPGLLHPNQITTRLTREEQKLVNINKEL--KPRTYRIK 410 (601)
Q Consensus 351 ~~--pgtT-~~~i~~~~--~----l--~~~-------~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL--~P~lllLD 410 (601)
.. +..+ .++..+.. . + ... ..++...++....+....||+||+||+..++.+ +|+++ |
T Consensus 87 ~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~--d 164 (318)
T 1nij_A 87 GNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA--G 164 (318)
T ss_dssp TSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC--S
T ss_pred CCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC--C
Confidence 33 2444 44443210 0 0 000 112333444331112236899999999888877 77765 4
Q ss_pred cchHHHHHHHHHHHHHhcCceEE
Q 007511 411 AGHSIHIAGLMRMDVEESSVESI 433 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~~g~tii 433 (601)
.. ..+..+++... .+.+++
T Consensus 165 e~--~~l~~~l~~l~--~~~~ii 183 (318)
T 1nij_A 165 EA--EKLHERLARIN--ARAPVY 183 (318)
T ss_dssp CT--HHHHHHHHHHC--SSSCEE
T ss_pred HH--HHHHHHHHHhC--CCCeEE
Confidence 43 66777777653 245554
No 129
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.78 E-value=3.3e-06 Score=89.13 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=34.0
Q ss_pred cchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCC
Q 007511 296 IDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGG 336 (601)
Q Consensus 296 L~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~ 336 (601)
++++ ++.+.+|. ++++|+||||||||+|+|+|++++..|.
T Consensus 165 ~~~l-~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 165 MSFL-RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp HHHH-HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred HHHH-HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 3777 77777775 5669999999999999999999988774
No 130
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=3.7e-06 Score=87.56 Aligned_cols=131 Identities=14% Similarity=0.046 Sum_probs=72.0
Q ss_pred ecCCccccchhhhhcccC--------CcEEEECCCCCchhHHHHHHhccc----cCCCCCcc------------ccccce
Q 007511 289 NWGLKSLIDDVVDLAGKR--------GNVWAIGAQNAGKSTLLNAIAKSV----DAGRGGDG------------EEKNIV 344 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~--------G~v~ivG~nGaGKSTLLn~L~g~~----~~~~G~i~------------~~~~~i 344 (601)
.+|...+++.+ ++.+.. ..++++|+||+|||||+++|++.. .+.+|.+. ..+..+
T Consensus 27 ~~g~~~~~~~l-~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v 105 (334)
T 1in4_A 27 FIGQENVKKKL-SLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDV 105 (334)
T ss_dssp CCSCHHHHHHH-HHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCE
T ss_pred ccCcHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCE
Confidence 34555566666 333321 356779999999999999999987 45555431 012345
Q ss_pred eEeeecCC-CCCceeeeeeecccc--------c-h----hhhhccCCCcCcCCccCCCCHHHHHHhccccccCCCEEEec
Q 007511 345 SHLTEAPV-PGTTLGIVRVEGVLP--------A-Q----AKLFDTPGLLHPNQITTRLTREEQKLVNINKELKPRTYRIK 410 (601)
Q Consensus 345 ~~v~qs~~-pgtT~~~i~~~~~l~--------~-~----~~llDtpGL~~~~~~~~~LSgGe~qrv~iaraL~P~lllLD 410 (601)
.++.+... ..+..+.+....... + . ...++.+++......+..||+|++||+.++- -||
T Consensus 106 ~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~-------~Ld 178 (334)
T 1in4_A 106 LFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIIL-------ELD 178 (334)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEE-------ECC
T ss_pred EEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCcee-------eCC
Confidence 55554332 111122211000000 0 0 1122334444444567889999999997663 345
Q ss_pred cchHHHHHHHHHHHHHh
Q 007511 411 AGHSIHIAGLMRMDVEE 427 (601)
Q Consensus 411 ~~~~~~l~~lir~~~~~ 427 (601)
+.....+..+++.....
T Consensus 179 ~~~~~~l~~iL~~~~~~ 195 (334)
T 1in4_A 179 FYTVKELKEIIKRAASL 195 (334)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66667777777765543
No 131
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.72 E-value=0.00012 Score=74.11 Aligned_cols=110 Identities=16% Similarity=0.122 Sum_probs=59.6
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCCccCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQITTR 387 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~~~~~ 387 (601)
.|+++|.+|||||||+|.|+|... ..+.+||+|.+.............++|+||..... .
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~~----------------~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~----~ 64 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHNQ----------------RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMS----P 64 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC----------------CCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSS----C
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC----------------cccCCCCCcEEEEEEEEecCCeEEEEECCCcCccC----C
Confidence 578899999999999999997431 23345787755433222222246789999986532 1
Q ss_pred CCHHHH-HHhccccccCCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEee
Q 007511 388 LTREEQ-KLVNINKELKPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVWA 439 (601)
Q Consensus 388 LSgGe~-qrv~iaraL~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~a 439 (601)
.|..+. .+..+ +.-+++++++ |.........+...... .+..++.+...+
T Consensus 65 ~~~~e~v~~~~~-~~~~~d~vi~V~D~t~~e~~~~~~~~l~~-~~~p~ilv~NK~ 117 (272)
T 3b1v_A 65 YSPEAKVARDYL-LSQRADSILNVVDATNLERNLYLTTQLIE-TGIPVTIALNMI 117 (272)
T ss_dssp SSHHHHHHHHHH-HTTCCSEEEEEEEGGGHHHHHHHHHHHHH-TCSCEEEEEECH
T ss_pred CChHHHHHHHHH-hcCCCCEEEEEecCCchHhHHHHHHHHHh-cCCCEEEEEECh
Confidence 232322 11111 1114665554 76665544444444333 244444443333
No 132
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.71 E-value=5.4e-05 Score=74.46 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.9
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
+|+++|.+|||||||+|+|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 6788999999999999999986543
No 133
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.70 E-value=6.3e-05 Score=77.16 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=21.4
Q ss_pred CCcEEEECCCCCchhHHHHHHhcc
Q 007511 306 RGNVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 306 ~G~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.+.|++||++|||||||+|+|+|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346888999999999999999985
No 134
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.68 E-value=7.2e-05 Score=74.94 Aligned_cols=115 Identities=21% Similarity=0.175 Sum_probs=60.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcCcCCccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLHPNQITT 386 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~~~~~~~ 386 (601)
.|+++|.+|||||||+|.|+|.. ...+.+|++|.+.........+ ...++|+||+......-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~----------------~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~ 66 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN----------------QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAE 66 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----------------EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC----
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccccccc
Confidence 57889999999999999998742 1234558888654433222222 357899999965321100
Q ss_pred CCCHHHH-HHhccccccCCCEEEe--ccchHHHHHHHHHHHHHhcCceEEEEEEeec
Q 007511 387 RLTREEQ-KLVNINKELKPRTYRI--KAGHSIHIAGLMRMDVEESSVESIYVTVWAS 440 (601)
Q Consensus 387 ~LSgGe~-qrv~iaraL~P~lllL--D~~~~~~l~~lir~~~~~~g~tii~~~~~ad 440 (601)
.-|..+. .+-.+. .-+++.+++ |.........+....... +..++.+...+|
T Consensus 67 ~~~~~e~i~~~~~~-~~~~d~vi~VvDas~~~~~~~l~~~l~~~-~~pvilv~NK~D 121 (256)
T 3iby_A 67 GISQDEQIAAQSVI-DLEYDCIINVIDACHLERHLYLTSQLFEL-GKPVVVALNMMD 121 (256)
T ss_dssp --CHHHHHHHHHHH-HSCCSEEEEEEEGGGHHHHHHHHHHHTTS-CSCEEEEEECHH
T ss_pred CCCHHHHHHHHHHh-hCCCCEEEEEeeCCCchhHHHHHHHHHHc-CCCEEEEEEChh
Confidence 0022221 111110 015665554 777655555555444332 444444333333
No 135
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.65 E-value=1.5e-05 Score=78.07 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=23.6
Q ss_pred ccCCcEE-EECCCCCchhHHHHHHhccccC
Q 007511 304 GKRGNVW-AIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 304 ~~~G~v~-ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.++|.++ ++||||||||||+++|+|..+|
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 3566654 5999999999999999999875
No 136
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.61 E-value=0.00011 Score=67.52 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++|||||||+|.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999753
No 137
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.55 E-value=2.9e-05 Score=90.87 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=66.3
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CCC--EEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KPR--TYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P~--lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
.+++..+||.. .++.+.+|||||+|||+||++| +|+ +|+| |+.....+..+++.+..+ |.|++.++
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~-G~TvivVt 523 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL-GNTVIVVE 523 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT-TCEEEEEC
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc-CCEEEEEe
Confidence 45677789975 6889999999999999999999 555 9998 888999999999988765 77777433
Q ss_pred ------EeecCEEEe------eccee
Q 007511 437 ------VWASPYLPL------HMGKT 450 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki 450 (601)
..||+++.| +.|++
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~i 549 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRV 549 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEE
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEE
Confidence 359999999 78876
No 138
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=97.54 E-value=5.9e-05 Score=79.83 Aligned_cols=57 Identities=30% Similarity=0.307 Sum_probs=40.5
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
+|++||.+|||||||||+|+|.. +..+.+|+||++.+.-...+. ....++|+|||..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~----------------~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE----------------SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIID 131 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC----------------CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC----------------CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccC
Confidence 68889999999999999999743 122455888866543222222 2367899999975
No 139
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.52 E-value=8.5e-05 Score=76.42 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=67.8
Q ss_pred chhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHH-HHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCC
Q 007511 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS 258 (601)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i-~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~ 258 (601)
..+.+.+.......+..+|+|++|+|+.+.....+..+ .+.+.. . + .|+++|+||+|+...
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----------~----~-~pvilV~NK~Dl~~~--- 137 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----------L----N-KPVIVVINKIDKIGP--- 137 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----------G----C-CCEEEEEECGGGSSS---
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----------c----C-CCEEEEEECccCCCC---
Confidence 34556666666677788999999999998755433333 333321 1 1 389999999999832
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
...+..++..+....+ .+..++.+|+..+.|...+++.+...
T Consensus 138 ~~~~~~~~~~l~~~~~--~~~~i~~vSA~~g~gv~~L~~~l~~~ 179 (308)
T 3iev_A 138 AKNVLPLIDEIHKKHP--ELTEIVPISALKGANLDELVKTILKY 179 (308)
T ss_dssp GGGGHHHHHHHHHHCT--TCCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCHHHHHHHHHHh
Confidence 1233444444444443 24578899999999988888877444
No 140
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.52 E-value=1.6e-05 Score=83.16 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=39.4
Q ss_pred EeecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCCCc
Q 007511 287 VKNWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 287 ~kg~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
.+.|+...+++++ ++.+.+|. +.++|+||||||||+|+|+|+..+..|.+
T Consensus 36 ~~~~~~~~~l~~i-~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 36 DHRAAVRDLIDAV-LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp HHHHHHHHHHHHH-GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ccccChHHHHHhC-CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 3445556678888 77777776 45599999999999999999988877754
No 141
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.51 E-value=0.00031 Score=70.51 Aligned_cols=57 Identities=25% Similarity=0.305 Sum_probs=38.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|+|... ..+..|++|.+......... ....++|+||...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~----------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 62 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ----------------HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYS 62 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE----------------EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc----------------ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccc
Confidence 578899999999999999997531 22345777755433222222 2357899999875
No 142
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.50 E-value=3.8e-05 Score=83.80 Aligned_cols=42 Identities=17% Similarity=-0.015 Sum_probs=35.7
Q ss_pred cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccccCCCCCc
Q 007511 294 SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
.+++++ ++.+.+ ++ +++|+||||||||+++|+|+..|+.|.+
T Consensus 18 ~~l~~v-sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I 60 (483)
T 3euj_A 18 NGFFAR-TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL 60 (483)
T ss_dssp TTEEEE-EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred ccccce-EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence 357777 788877 55 5599999999999999999999999965
No 143
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.50 E-value=0.00018 Score=72.04 Aligned_cols=57 Identities=28% Similarity=0.301 Sum_probs=39.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|+|.. ...+.+||+|.+........ .....++|+||...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~----------------~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~ 64 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK----------------QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYS 64 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----------------CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 57889999999999999999743 11334578885543332222 12367899999865
No 144
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.48 E-value=8.2e-05 Score=86.88 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=65.7
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C--CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K--PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT- 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~--P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~- 436 (601)
++++.+||.. .++.+.+|||||+|||.||++| + |++|+| |+.....+..+++.+... |.|++.++
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeH 564 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL-GNTLIVVEH 564 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEECC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhC-CCEEEEEec
Confidence 4578889974 6899999999999999999999 4 589998 888999999999988655 77777332
Q ss_pred -----EeecCEEEe------eccee
Q 007511 437 -----VWASPYLPL------HMGKT 450 (601)
Q Consensus 437 -----~~ad~vl~l------~~Gki 450 (601)
..||+++.| +.|++
T Consensus 565 dl~~i~~ADrIi~LgpgaG~~gG~i 589 (972)
T 2r6f_A 565 DEDTMLAADYLIDIGPGAGIHGGEV 589 (972)
T ss_dssp CHHHHHSCSEEEEECSSSGGGCCSE
T ss_pred CHHHHHhCCEEEEeCCCccCCCCEE
Confidence 468999999 67776
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.46 E-value=0.00015 Score=72.13 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.8
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|++||.+|||||||+|.|+|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57889999999999999999754
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.45 E-value=6.6e-06 Score=84.20 Aligned_cols=98 Identities=12% Similarity=0.034 Sum_probs=56.5
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC--CCCceeeeeeec------c---ccc------hh
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV--PGTTLGIVRVEG------V---LPA------QA 370 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~--pgtT~~~i~~~~------~---l~~------~~ 370 (601)
.|+++|++|||||||.+.|.+++.+. |. ..+.+.+++++.+ +++..+++.+.. . ... ..
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~~-g~---~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLMEK-YG---GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HG---GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-CC---CCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 35669999999999999999988542 10 0223344477664 433333332110 0 000 11
Q ss_pred hhhccC--CC-----c--CcCCccCCCCHHHHHHhccc--cccCCCEEEe
Q 007511 371 KLFDTP--GL-----L--HPNQITTRLTREEQKLVNIN--KELKPRTYRI 409 (601)
Q Consensus 371 ~llDtp--GL-----~--~~~~~~~~LSgGe~qrv~ia--raL~P~lllL 409 (601)
+.++.+ |+ . ....+...+||||.||+.++ +++.|+++++
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIl 158 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFIL 158 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEE
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEE
Confidence 222222 21 0 02344567999999999886 5568899998
No 147
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.45 E-value=5.4e-05 Score=70.47 Aligned_cols=58 Identities=36% Similarity=0.447 Sum_probs=37.1
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
.++++|.+|||||||+|.|++...+ ..+..|++|.+...-...+.+ ...++||+|+..
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGREAA---------------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcc---------------eeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 5788999999999999999975321 123345666543322111222 246889999864
No 148
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.45 E-value=0.00036 Score=65.02 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=36.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~ 380 (601)
.++++|++|||||||+|.|++.. ...+..|++|.+........ .....++|+||...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~----------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN----------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC----------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCc
Confidence 57889999999999999999632 11223366664432211111 12356899999865
No 149
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.38 E-value=0.00011 Score=86.04 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=65.1
Q ss_pred hhhccCCCcC--cCCccCCCCHHHHHHhcccccc--C--CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE-
Q 007511 371 KLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--K--PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT- 436 (601)
Q Consensus 371 ~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~--P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~- 436 (601)
++++.+||.. .++.+.+|||||+|||.||++| + |++|+| |+.....+..+++.+... |.|++.+.
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~-G~TVIvVeH 581 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDL-GNTLIVVEH 581 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHc-CCEEEEECC
Confidence 4577889874 6899999999999999999999 5 589998 788889999999988765 77777332
Q ss_pred -----EeecCEEEe------eccee
Q 007511 437 -----VWASPYLPL------HMGKT 450 (601)
Q Consensus 437 -----~~ad~vl~l------~~Gki 450 (601)
..||+++.| +.|++
T Consensus 582 dl~~i~~ADrIi~Lgp~aG~~gG~i 606 (993)
T 2ygr_A 582 DEDTIEHADWIVDIGPGAGEHGGRI 606 (993)
T ss_dssp CHHHHHTCSEEEEECSSSGGGCCSC
T ss_pred CHHHHHhCCEEEEecCccccCCCEE
Confidence 468999999 67776
No 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=97.36 E-value=6.1e-05 Score=69.21 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=50.4
Q ss_pred cCCccCCCCHHHHHHhccc------ccc--CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------Eee
Q 007511 381 PNQITTRLTREEQKLVNIN------KEL--KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWA 439 (601)
Q Consensus 381 ~~~~~~~LSgGe~qrv~ia------raL--~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~a 439 (601)
.++.+..|||||+||+++| ++| +|++++| |+.....+..+++....+ +.+++.++ .+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEELKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCGGGGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChHHHHHhC
Confidence 4567889999999999876 777 7999999 788888888888876554 56666443 367
Q ss_pred cCEEEee
Q 007511 440 SPYLPLH 446 (601)
Q Consensus 440 d~vl~l~ 446 (601)
|+++.++
T Consensus 130 d~ii~l~ 136 (148)
T 1f2t_B 130 DHVIRIS 136 (148)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8888774
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.36 E-value=7.6e-05 Score=73.05 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=19.0
Q ss_pred ccchhhhhcccCCcEEE-ECCCCCchhHHHHHHh-cccc
Q 007511 295 LIDDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIA-KSVD 331 (601)
Q Consensus 295 LL~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~-g~~~ 331 (601)
....+ ++.+.+|.+++ +|+||||||||+++|+ |+.+
T Consensus 16 ~~~~~-sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPG-SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCC-CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 44555 77778887554 9999999999999999 9873
No 152
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.36 E-value=7.2e-05 Score=76.79 Aligned_cols=60 Identities=38% Similarity=0.396 Sum_probs=39.3
Q ss_pred CcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcCc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLHP 381 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~~ 381 (601)
|.|++||.+|||||||+|.|+|... ...++.|+||.+.+...... .....++||||+...
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~---------------~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV---------------APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce---------------eeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 5688899999999999999997431 11234467775543321111 123568999998753
No 153
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.34 E-value=0.00021 Score=73.38 Aligned_cols=100 Identities=15% Similarity=0.090 Sum_probs=64.5
Q ss_pred chhhHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCCh
Q 007511 180 FDFDHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP 259 (601)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~ 259 (601)
..+.+.+......++..+|++++|+|+.+.....+..+.+.+... . ...|+++|+||+|+....
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~--------~-----~~~p~ilV~NK~Dl~~~~--- 133 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPL--------V-----GKVPILLVGNKLDAAKYP--- 133 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGG--------T-----TTSCEEEEEECGGGCSSH---
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhh--------c-----CCCCEEEEEECcccCCch---
Confidence 344555666667778899999999999987544333343433321 0 013899999999998531
Q ss_pred hHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 260 TRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 260 ~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+..++..+ . .+..++.+|+.++.|...+++.+..
T Consensus 134 ~~~~~~~~~~---~---~~~~~~~iSA~~g~gv~~l~~~l~~ 169 (301)
T 1wf3_A 134 EEAMKAYHEL---L---PEAEPRMLSALDERQVAELKADLLA 169 (301)
T ss_dssp HHHHHHHHHT---S---TTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh---c---CcCcEEEEeCCCCCCHHHHHHHHHH
Confidence 1133333332 1 3456888999988888888877743
No 154
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.30 E-value=8.7e-05 Score=76.33 Aligned_cols=62 Identities=39% Similarity=0.434 Sum_probs=41.4
Q ss_pred cCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc--cchhhhhccCCCcCc
Q 007511 305 KRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL--PAQAKLFDTPGLLHP 381 (601)
Q Consensus 305 ~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l--~~~~~llDtpGL~~~ 381 (601)
..|.|+++|.+|||||||+|.|+|... ...++.|++|...+...... .....++||||+...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~---------------~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~ 72 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKV---------------SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCC---------------SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc---------------cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcc
Confidence 456889999999999999999997431 11344577775443322112 223568999999753
No 155
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=7.6e-05 Score=78.27 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred chhhhhcccCCcEEE-ECCCCCchhHHHHHHhccc--cCCCC
Q 007511 297 DDVVDLAGKRGNVWA-IGAQNAGKSTLLNAIAKSV--DAGRG 335 (601)
Q Consensus 297 ~~I~~l~~~~G~v~i-vG~nGaGKSTLLn~L~g~~--~~~~G 335 (601)
+.+....+.+|.++. +|+||+|||||++.|++.. +++.|
T Consensus 121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~G 162 (349)
T 1pzn_A 121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEG 162 (349)
T ss_dssp HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcC
Confidence 333345567787655 9999999999999999987 55553
No 156
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.29 E-value=0.00011 Score=85.14 Aligned_cols=80 Identities=13% Similarity=0.084 Sum_probs=65.6
Q ss_pred hhhhccCCCcC--cCCccCCCCHHHHHHhcccccc--CC--CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE
Q 007511 370 AKLFDTPGLLH--PNQITTRLTREEQKLVNINKEL--KP--RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT 436 (601)
Q Consensus 370 ~~llDtpGL~~--~~~~~~~LSgGe~qrv~iaraL--~P--~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~ 436 (601)
...++.+||.. .++.+..|||||+|||.||++| +| .+|+| |+.....+..+++.+... |.+++.+.
T Consensus 360 l~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~-G~TVIvVe 438 (842)
T 2vf7_A 360 LDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG-GNSLFVVE 438 (842)
T ss_dssp HHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT-TCEEEEEC
T ss_pred HHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEc
Confidence 45678899975 6899999999999999999999 66 58888 788899999999988765 67777332
Q ss_pred ------EeecCEEEe------eccee
Q 007511 437 ------VWASPYLPL------HMGKT 450 (601)
Q Consensus 437 ------~~ad~vl~l------~~Gki 450 (601)
..||+++.| +.|++
T Consensus 439 Hdl~~l~~aD~ii~lgpgaG~~~G~i 464 (842)
T 2vf7_A 439 HDLDVIRRADWLVDVGPEAGEKGGEI 464 (842)
T ss_dssp CCHHHHTTCSEEEEECSSSGGGCCSE
T ss_pred CCHHHHHhCCEEEEeCCCcccCCCEE
Confidence 468999999 66765
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.27 E-value=0.00012 Score=69.82 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=22.1
Q ss_pred ccCCcE-EEECCCCCchhHHHHHHhccc
Q 007511 304 GKRGNV-WAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 304 ~~~G~v-~ivG~nGaGKSTLLn~L~g~~ 330 (601)
..+|.+ +++|+||||||||+++|+|+.
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345654 559999999999999999986
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.27 E-value=0.00013 Score=69.10 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred EEEECCCCCchhHHHHHHhccccC
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
++++|+||||||||+++|+|+.++
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEECCCCCCHHHHHHHHHhhCCc
Confidence 567999999999999999999864
No 159
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.26 E-value=0.00032 Score=65.47 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=57.0
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+++|++|+|+.+........+.+++... + .|+++|+||+|+.+.. ......+.+...+...
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--------------~-~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--------------N-IPFTIVLTKMDKVKMS-ERAKKLEEHRKVFSKY 165 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--------------T-CCEEEEEECGGGSCGG-GHHHHHHHHHHHHHSS
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHc--------------C-CCEEEEEEChhcCChH-HHHHHHHHHHHHHhhc
Confidence 3456899999999886544444444444321 1 3899999999998542 1122223333333332
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+ ...++.+|+..+.|..++++.+..
T Consensus 166 ~---~~~~~~~Sa~~~~gv~~l~~~l~~ 190 (195)
T 3pqc_A 166 G---EYTIIPTSSVTGEGISELLDLIST 190 (195)
T ss_dssp C---CSCEEECCTTTCTTHHHHHHHHHH
T ss_pred C---CCceEEEecCCCCCHHHHHHHHHH
Confidence 2 236888999999999988887743
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00012 Score=70.11 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.5
Q ss_pred cEEEECCCCCchhHHHHHHhcccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
.++++|+||||||||+++|+|+++
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 467799999999999999999874
No 161
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.25 E-value=0.00024 Score=68.30 Aligned_cols=93 Identities=15% Similarity=0.117 Sum_probs=56.0
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
....|+|++|+|+.+........+.+++.. . + .|+++|+||+|+++.... ......+.+.+...
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~----------~----~-~p~i~v~nK~Dl~~~~~~-~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAP----------T----G-KPIHSLLTKCDKLTRQES-INALRATQKSLDAY 176 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGG----------G----C-CCEEEEEECGGGSCHHHH-HHHHHHHHHHHHHH
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHh----------c----C-CCEEEEEeccccCChhhH-HHHHHHHHHHHHhh
Confidence 445788999999998654333444444432 1 1 379999999999863211 11112222222221
Q ss_pred ---CCCccceEEEEEeEeecCCccccchhhhh
Q 007511 274 ---GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 274 ---g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+......++.+|+..+.|..++++.+...
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 208 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESW 208 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence 10123568899999999999888887443
No 162
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.23 E-value=0.00019 Score=66.55 Aligned_cols=105 Identities=20% Similarity=0.091 Sum_probs=60.5
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... ... ....|+++|+||+|+... .........| .+.
T Consensus 75 ~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~~----~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~ 140 (181)
T 3t5g_A 75 SIDINGYILVYSVTSIK-SF-EVIKVIHGKLLD----MVG----KVQIPIMLVGNKKDLHMERVISYEEGKAL----AES 140 (181)
T ss_dssp TTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH----HC--------CCEEEEEECTTCTTTCCSCHHHHHHH----HHH
T ss_pred HhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHH----hcC----CCCCCEEEEEECccchhcceecHHHHHHH----HHH
Confidence 44689999999998743 22 223333221100 000 012389999999999754 3333444444 334
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
.+ ..++.+|+..+.|..++++.+....... -|..++||||
T Consensus 141 ~~----~~~~~~Sa~~~~~v~~l~~~l~~~~~~~-----~~~~~~gkss 180 (181)
T 3t5g_A 141 WN----AAFLESSAKENQTAVDVFRRIILEAEKM-----DGACSQGKSS 180 (181)
T ss_dssp TT----CEEEECCTTSHHHHHHHHHHHHHHHHTC----------CCBSC
T ss_pred hC----CcEEEEecCCCCCHHHHHHHHHHHHHHh-----cCCcccCcCC
Confidence 44 2578899999999999888875443322 3778889986
No 163
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.09 E-value=0.00094 Score=62.51 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=53.1
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCC
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~ 275 (601)
..|.+++|+|+.+........+.+++.. . + .|+++|+||+|+.+.. .+.....+..+..+.
T Consensus 105 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~----------~----~-~p~i~v~nK~Dl~~~~----~~~~~~~~~~~~~~~ 165 (195)
T 1svi_A 105 ELKAVVQIVDLRHAPSNDDVQMYEFLKY----------Y----G-IPVIVIATKADKIPKG----KWDKHAKVVRQTLNI 165 (195)
T ss_dssp TEEEEEEEEETTSCCCHHHHHHHHHHHH----------T----T-CCEEEEEECGGGSCGG----GHHHHHHHHHHHHTC
T ss_pred cCCEEEEEEECCCCCCHHHHHHHHHHHH----------c----C-CCEEEEEECcccCChH----HHHHHHHHHHHHHcc
Confidence 4489999999998654333334444432 1 1 3899999999998642 222222222121221
Q ss_pred CccceEEEEEeEeecCCccccchhh
Q 007511 276 SKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 276 ~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.....++.+|+..+.|..++++.+.
T Consensus 166 ~~~~~~~~~Sa~~~~gv~~l~~~l~ 190 (195)
T 1svi_A 166 DPEDELILFSSETKKGKDEAWGAIK 190 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHH
T ss_pred cCCCceEEEEccCCCCHHHHHHHHH
Confidence 1224688899999999988887763
No 164
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.08 E-value=0.00023 Score=66.60 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=28.4
Q ss_pred hhcccCCcEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 301 DLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 301 ~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
++.+.+|..+++|+||||||||+++|.+.+.+..|
T Consensus 21 ~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 21 VIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp EEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred EEecCCCcEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 45556776677999999999999999988766554
No 165
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.08 E-value=9.4e-05 Score=79.45 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred cccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCc
Q 007511 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
.+++.+ +...+|.+.++|+|||||||||++|+|++.+..|.+
T Consensus 157 ~~L~~l--~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I 198 (418)
T 1p9r_A 157 DNFRRL--IKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 198 (418)
T ss_dssp HHHHHH--HTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred HHHHHH--HHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence 345554 222333567799999999999999999998887743
No 166
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.06 E-value=0.00015 Score=69.78 Aligned_cols=29 Identities=38% Similarity=0.407 Sum_probs=24.3
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhccccCC
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAG 333 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~ 333 (601)
.+|. ++++|+||||||||+++|+|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4454 5669999999999999999998764
No 167
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.02 E-value=0.0002 Score=78.85 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=31.8
Q ss_pred ccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCC
Q 007511 295 LIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 295 LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
+++.+ ++.+..|. +.++|+||||||||+|+|+|+++++.|
T Consensus 249 ~l~~l-~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 249 VLAYL-WLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHHH-HHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHH-HHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 44555 55555664 677999999999999999999988776
No 168
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.01 E-value=0.00073 Score=64.75 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=21.3
Q ss_pred ccCCcEEE-ECCCCCchhHHHHHHhc
Q 007511 304 GKRGNVWA-IGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 304 ~~~G~v~i-vG~nGaGKSTLLn~L~g 328 (601)
+.+|.+++ +|+||+|||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45676655 99999999999999998
No 169
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.00 E-value=0.00022 Score=73.25 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=27.1
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhcccc--CCCCCc
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVD--AGRGGD 337 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~~~--~~~G~i 337 (601)
.+|. ++++|+||||||||+++|+|++. |+.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 4554 55699999999999999999987 777743
No 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.98 E-value=0.0003 Score=65.48 Aligned_cols=54 Identities=30% Similarity=0.431 Sum_probs=36.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
+|+++|.+|||||||+|.+++... ..+..|++|.....+.. . ...++|+||+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~t~~~~~~~~--~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV----------------RRGKRPGVTRKIIEIEW--K-NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC----------------SSSSSTTCTTSCEEEEE--T-TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC----------------ccCCCCCccceeEEEec--C-CEEEEECCCccc
Confidence 478899999999999999996431 12233666644433321 1 457899999754
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.98 E-value=0.00065 Score=73.65 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=61.2
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCC-ChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL-SPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~-~~~~l~~w~~~~~~ 271 (601)
.+..+|++++|+|+.+.....+..+.+++.. .+ .++++|+||+|+..... ..+.+.+++++.+.
T Consensus 274 ~~~~ad~~llviD~~~~~~~~~~~~~~~~~~----------~~-----~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 338 (456)
T 4dcu_A 274 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----------AG-----KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ 338 (456)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TT-----CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCG
T ss_pred HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH----------cC-----CCEEEEEEChhcCCCchHHHHHHHHHHHHhcc
Confidence 4556899999999998655444444444432 12 38999999999986532 22344455444332
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+ ...++.+||..+.|..++++.+..
T Consensus 339 ~~~---~~~~~~~SA~~g~gv~~l~~~i~~ 365 (456)
T 4dcu_A 339 FLD---YAPILFMSALTKKRIHTLMPAIIK 365 (456)
T ss_dssp GGT---TSCEEECCTTTCTTGGGHHHHHHH
T ss_pred cCC---CCCEEEEcCCCCcCHHHHHHHHHH
Confidence 222 346889999999999999888744
No 172
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.96 E-value=0.00032 Score=65.81 Aligned_cols=57 Identities=21% Similarity=0.345 Sum_probs=33.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
.++++|..|||||||+|.|++.... ...++.+++|.+...+. ......++|+||+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~t~~~~~~~--~~~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRKNL--------------ARTSSKPGKTQTLNFYI--INDELHFVDVPGYGF 81 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEE--ETTTEEEEECCCBCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc--------------cccCCCCCceeeEEEEE--ECCcEEEEECCCCCc
Confidence 6888999999999999999964210 01123355664433322 233567899999865
No 173
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.96 E-value=0.00066 Score=73.20 Aligned_cols=133 Identities=19% Similarity=0.186 Sum_probs=77.1
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|++++|+|+.+.....+..+.+++.. .+ .++++|+||+|++.... ....++.....+.
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~----------~~-----~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~ 322 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLMER----------RG-----RASVVVFNKWDLVVHRE--KRYDEFTKLFREK 322 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TT-----CEEEEEEECGGGSTTGG--GCHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH----------cC-----CCEEEEEECccCCCchh--hHHHHHHHHHHHH
Confidence 3455899999999987654333333333321 12 38999999999986421 1123332222222
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCC
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPV 352 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~ 352 (601)
........++.+||.++.|...+++.+........ .-=+|+.+|.+++....... ...+-++-|.+|-..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~--------~~i~t~~ln~~l~~~~~~~~--~~~~~ki~y~~q~~~ 392 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT--------TKVPSSAINSALQKVLAFTN--LPRGLKIFFGVQVDI 392 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT--------CCCCHHHHHHHHHHHHTTCC--CSTTCCEEEEEEEET
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc--------ccCCHHHHHHHHHHHHHcCC--CCCCcEEEEEEecCC
Confidence 22112346889999999999999888844322211 11278999988875432111 013345667777654
No 174
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.95 E-value=0.00031 Score=70.68 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|.+|+|||||+|+|++..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999998754
No 175
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.93 E-value=0.00029 Score=74.13 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=28.5
Q ss_pred hhcccC--C-cEEEECCCCCchhHHHHHHhccccCCC
Q 007511 301 DLAGKR--G-NVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (601)
Q Consensus 301 ~l~~~~--G-~v~ivG~nGaGKSTLLn~L~g~~~~~~ 334 (601)
++.+.+ + .++++|+||||||||+++|+|++.+..
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 455555 5 466699999999999999999999887
No 176
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.92 E-value=0.00028 Score=74.63 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=27.1
Q ss_pred ccCCc-EEEECCCCCchhHHHHHHhccccCC-CCC
Q 007511 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG-RGG 336 (601)
Q Consensus 304 ~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~-~G~ 336 (601)
+.+|. ++++|+||||||||+++|+|++.+. .|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~ 167 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH 167 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcE
Confidence 44554 6669999999999999999999876 563
No 177
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.92 E-value=0.00044 Score=64.53 Aligned_cols=56 Identities=32% Similarity=0.333 Sum_probs=37.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~ 380 (601)
+++++|..|||||||+|.|++.... ..++.+++|....... ......++|+||+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~t~~~~~~~--~~~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIA---------------FVSKTPGKTRSINFYL--VNSKYYFVDLPGYGY 80 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCS---------------CCCSSCCCCCCEEEEE--ETTTEEEEECCCBSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCccc---------------cccCCCCCccCeEEEE--ECCcEEEEECCCCcc
Confidence 6888999999999999999975311 1223355664433221 223456899999754
No 178
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.91 E-value=0.00036 Score=70.06 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=36.6
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|+++|.+|+|||||+|.|+|.... ..+..+++|.+......... ....++||||+..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGERVV---------------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCS---------------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcc---------------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 5788999999999999999974321 12233445533322221111 1367899999865
No 179
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.90 E-value=0.00043 Score=65.06 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEECCCCCchhHHHHHHhcccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
.++++|+||||||||++.|++..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 356699999999999999999864
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.89 E-value=0.00038 Score=69.56 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=36.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|+++|.+|+|||||+|+|+|.... +.+..+++|........... ....++||||...
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~ 96 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQVV---------------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVE 96 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSCCS---------------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCc---------------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCC
Confidence 5788999999999999999974311 12233444533222211121 1357899999975
No 181
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.89 E-value=0.0023 Score=62.07 Aligned_cols=95 Identities=14% Similarity=0.103 Sum_probs=55.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+...-.......++... +.. . ...|+++|+||+|+................+....
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l--------~~~-~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 175 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSI--------KSV-F-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNV 175 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHH--------HTC-C--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHH--------HHh-h-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhc
Confidence 4567899999999986432112222333221 000 0 12389999999999865322222223334444443
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+ ....++.+|+..+.|+.++++.+.
T Consensus 176 ~--~~~~~~~~SA~~g~gi~~l~~~l~ 200 (228)
T 2qu8_A 176 K--NPIKFSSFSTLTGVGVEQAKITAC 200 (228)
T ss_dssp C--SCEEEEECCTTTCTTHHHHHHHHH
T ss_pred C--CCceEEEEecccCCCHHHHHHHHH
Confidence 3 123678899999999988887763
No 182
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.00038 Score=74.00 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.+++||.+|||||||||+|+|.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6888999999999999999975
No 183
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.87 E-value=0.00029 Score=74.92 Aligned_cols=23 Identities=48% Similarity=0.628 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.+.+||+||||||||||+|+|..
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~ 44 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSV 44 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 56779999999999999999843
No 184
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.85 E-value=0.0015 Score=61.11 Aligned_cols=108 Identities=20% Similarity=0.158 Sum_probs=56.2
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++... ..+.. ...|+++|+||+|+.... ........| .+.
T Consensus 86 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i-----~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~ 150 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQE-SF-NNVKQWLQEI-----DRYAS----ENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADS 150 (196)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HTHHHHHHHH-----HHHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHH----HHH
T ss_pred HhhCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHhcC----CCCCEEEEEECcccccccccCHHHHHHH----HHH
Confidence 45689999999999843 21 2233333221 00110 123899999999998653 222333333 334
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhH
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKST 321 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKST 321 (601)
.+ ..++.+|+..+.|..++++.+........ --.-+..|++||+
T Consensus 151 ~~----~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~-~~~~~~~~~~~s~ 194 (196)
T 3tkl_A 151 LG----IPFLETSAKNATNVEQSFMTMAAEIKKRM-GPGATAGGAEKSN 194 (196)
T ss_dssp TT----CCEEEECTTTCTTHHHHHHHHHHHHHHHC--------------
T ss_pred cC----CcEEEEeCCCCCCHHHHHHHHHHHHHHHh-ccccccCCCccCC
Confidence 44 25788999999999988877744332211 1112345666665
No 185
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.85 E-value=0.00029 Score=67.81 Aligned_cols=59 Identities=29% Similarity=0.286 Sum_probs=38.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecc--ccchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGV--LPAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~--l~~~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|++.... ...+..+++|.+....... -.....++||||+..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRL--------------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSS--------------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCcc--------------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 6888999999999999999975310 1123346667543322211 112367899999865
No 186
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.85 E-value=0.00041 Score=62.59 Aligned_cols=86 Identities=23% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 188 RKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 188 ~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
.........+|.+++|+|+.+........+.+++... + .|+++|+||+|+.... ....++
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--------------~-~p~ilv~nK~Dl~~~~---~~~~~~-- 130 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK--------------G-KPVILVATKVDDPKHE---LYLGPL-- 130 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--------------T-CCEEEEEECCCSGGGG---GGCGGG--
T ss_pred HHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc--------------C-CCEEEEEECcccccch---HhHHHH--
Confidence 3444556779999999999986443333444444321 1 3799999999997531 222222
Q ss_pred HHHHHcCCCccceEEEEEeEeecCCccccchh
Q 007511 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
. ..+ ...++.+|+..+.|..++++.+
T Consensus 131 --~-~~~---~~~~~~~Sa~~~~gv~~l~~~l 156 (161)
T 2dyk_A 131 --Y-GLG---FGDPIPTSSEHARGLEELLEAI 156 (161)
T ss_dssp --G-GGS---SCSCEECBTTTTBSHHHHHHHH
T ss_pred --H-hCC---CCCeEEEecccCCChHHHHHHH
Confidence 1 223 2357889999999998888776
No 187
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.84 E-value=0.00045 Score=65.64 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=23.6
Q ss_pred ccCCc-EEEECCCCCchhHHHHHHhccccCC
Q 007511 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAG 333 (601)
Q Consensus 304 ~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~ 333 (601)
+.+|. ++++|+||||||||++.|++...++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 34565 4559999999999999999987543
No 188
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.83 E-value=0.00039 Score=62.71 Aligned_cols=58 Identities=34% Similarity=0.379 Sum_probs=32.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccc-cchhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVL-PAQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l-~~~~~llDtpGL~~ 380 (601)
+++++|..|||||||+|.+.+.... ..+..+++|.+........ .....++|+||...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSA---------------VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCee---------------eccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4788999999999999999974311 1122244443322221111 12356899999875
No 189
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.81 E-value=0.00076 Score=62.93 Aligned_cols=90 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred hccCCcEEEEEEeCCCCCCCccH----HHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPR----KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~----~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~ 268 (601)
....+|.+++|+|+.+.....+. .+.+++.. .+.. ....|+++|+||+||... .....+.+|.
T Consensus 94 ~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~--------~~~~--~~~~piilv~NK~Dl~~~-~~~~~~~~~~-- 160 (198)
T 3t1o_A 94 ILRGVDGIVFVADSAPNRLRANAESMRNMRENLAE--------YGLT--LDDVPIVIQVNKRDLPDA-LPVEMVRAVV-- 160 (198)
T ss_dssp HTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHH--------TTCC--TTSSCEEEEEECTTSTTC-CCHHHHHHHH--
T ss_pred HHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHh--------hccc--cCCCCEEEEEEchhcccc-cCHHHHHHHH--
Confidence 45679999999999854221111 22222221 1100 122489999999999754 3444454443
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+..+ ...++.+|+..+.|..++++.+.
T Consensus 161 --~~~~---~~~~~~~Sa~~~~gv~~l~~~l~ 187 (198)
T 3t1o_A 161 --DPEG---KFPVLEAVATEGKGVFETLKEVS 187 (198)
T ss_dssp --CTTC---CSCEEECBGGGTBTHHHHHHHHH
T ss_pred --HhcC---CceEEEEecCCCcCHHHHHHHHH
Confidence 3333 23678899999999988887763
No 190
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.78 E-value=0.00043 Score=73.00 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.6
Q ss_pred EEEECCCCCchhHHHHHHhccc
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
++++|++|||||||+|+|+|..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7789999999999999999764
No 191
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.76 E-value=0.00029 Score=76.88 Aligned_cols=58 Identities=33% Similarity=0.349 Sum_probs=25.6
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|++.. ....+..|+||.+.+.....+.+ ...++||||+..
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~---------------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE---------------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---------------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 58889999999999999998742 12234457788665433222222 367899999965
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.76 E-value=0.00043 Score=72.83 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.+++||.+|||||||+|+|++.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5788999999999999999974
No 193
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=96.75 E-value=0.0038 Score=67.28 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=55.8
Q ss_pred hhccCCcEEEEEEeCCCCCC-------CccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChh---H
Q 007511 192 SASGARSVVLMVVDAADFDG-------SFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPT---R 261 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~-------s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~---~ 261 (601)
..+..+|++++|||+.+..+ ....+...++.. . +.+++++|+||+|+...+.... .
T Consensus 114 ~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----------~----~v~~iIvviNK~Dl~~~~~~~~~~~~ 179 (439)
T 3j2k_7 114 GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----------A----GVKHLIVLINKMDDPTVNWSNERYEE 179 (439)
T ss_pred hhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----------c----CCCeEEEEeecCCCcccchHHHHHHH
Confidence 34456999999999998653 122222222221 1 2234999999999974322222 2
Q ss_pred HHHHHHHHHHHcCCCc--cceEEEEEeEeecCCccccchh
Q 007511 262 FEHWVRQRAREDGISK--ITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 262 l~~w~~~~~~~~g~~~--~~~V~lvSa~kg~G~~~LL~~I 299 (601)
+..-+..+++..|... ...++.+|+.++.|..++.+.+
T Consensus 180 i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~~~ 219 (439)
T 3j2k_7 180 CKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSDFC 219 (439)
T ss_pred HHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccccc
Confidence 3333334454555311 2358889999999998876644
No 194
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.74 E-value=0.00074 Score=69.45 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhccCCCcCcCC
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFDTPGLLHPNQ 383 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llDtpGL~~~~~ 383 (601)
.++. ++++|+||+||||++..|++.+.+..| ++.++..+.......+ ....+.+..|+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-------kV~lv~~D~~r~~a~e---------qL~~~~~~~gl~~--- 162 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-------SVVLAAADTFRAAAIE---------QLKIWGERVGATV--- 162 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECTTCHHHHH---------HHHHHHHHHTCEE---
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-------EEEEEccccccHHHHH---------HHHHHHHHcCCcE---
Confidence 3444 456999999999999999999876544 2233322211000000 0112334445432
Q ss_pred ccCCCCHHHHHHh---cccccc--CCCEEEecc
Q 007511 384 ITTRLTREEQKLV---NINKEL--KPRTYRIKA 411 (601)
Q Consensus 384 ~~~~LSgGe~qrv---~iaraL--~P~lllLD~ 411 (601)
...+|+|+.+++ ++++++ +++++++|.
T Consensus 163 -~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDt 194 (306)
T 1vma_A 163 -ISHSEGADPAAVAFDAVAHALARNKDVVIIDT 194 (306)
T ss_dssp -ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred -EecCCccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 234577888888 677766 889999953
No 195
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.73 E-value=0.0015 Score=70.38 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=57.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCC-hhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-PTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~-~~~l~~w~~~~~~ 271 (601)
.+..+|++++|+|+.+.....+..+...+.. .+ .++++|+||+|+...... ...+.+.+.+.+.
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~----------~~-----~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~ 318 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE----------AG-----KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQ 318 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH----------TT-----CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCG
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH----------cC-----CcEEEEEECccCCCcchHHHHHHHHHHHHhcc
Confidence 4456899999999998765433333333221 12 389999999999875321 1223333332221
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.. ....++.+|+..+.|..++++.+..
T Consensus 319 ~~---~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 319 FL---DYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp GG---TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred cC---CCCCEEEEecccCCCHHHHHHHHHH
Confidence 11 1246889999999999999888744
No 196
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.71 E-value=0.00025 Score=69.88 Aligned_cols=30 Identities=23% Similarity=0.102 Sum_probs=26.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGD 337 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i 337 (601)
.++++|+||||||||+++|+|++.|+.|.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 456699999999999999999999998865
No 197
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.71 E-value=0.00088 Score=68.57 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=59.3
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
...++..+|++++|+|+.+ .......+.+.+.. . + .|+++|+||+|+... ...+..++..+
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~----------~----~-~P~ilvlNK~D~~~~---~~~~~~~l~~l 142 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE----------G----K-APVILAVNKVDNVQE---KADLLPHLQFL 142 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS----------S----S-SCEEEEEESTTTCCC---HHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh----------c----C-CCEEEEEECcccCcc---HHHHHHHHHHH
Confidence 3456778999999999988 33333334443321 0 1 389999999999751 23455555554
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
....+ +..++.+|+..+.|...+++.+..
T Consensus 143 ~~~~~---~~~~i~iSA~~g~~v~~l~~~i~~ 171 (301)
T 1ega_A 143 ASQMN---FLDIVPISAETGLNVDTIAAIVRK 171 (301)
T ss_dssp HTTSC---CSEEEECCTTTTTTHHHHHHHHHT
T ss_pred HHhcC---cCceEEEECCCCCCHHHHHHHHHH
Confidence 43333 346788999888888888877743
No 198
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.70 E-value=0.00061 Score=67.65 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|.+|||||||+|.|+|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68889999999999999999754
No 199
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.70 E-value=0.0021 Score=58.19 Aligned_cols=94 Identities=20% Similarity=0.115 Sum_probs=55.1
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.+.. ++ ..+..++..... .. . ...|+++|+||+|+...........+....+.+.
T Consensus 72 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~~-~---~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~ 140 (170)
T 1ek0_A 72 YYRNAQAALVVYDVTKPQ-SF-IKARHWVKELHE-----QA-S---KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEE 140 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH-----HS-C---TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH
T ss_pred hhccCcEEEEEEecCChH-HH-HHHHHHHHHHHH-----hc-C---CCCcEEEEEECCCccccccccCCCHHHHHHHHHH
Confidence 345689999999998753 21 233333322110 00 0 1238999999999986421111112223333344
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|..++++.+.+
T Consensus 141 ~~----~~~~~~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 141 KG----LLFFETSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp HT----CEEEECCTTTCTTHHHHHHHHHT
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHHH
Confidence 44 25788999999999988887743
No 200
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.70 E-value=0.00025 Score=77.55 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=39.9
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLL 379 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~ 379 (601)
.|+++|.+|||||||+|.|++... ...+..|+||++.+.....+.+ ...++||+|+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~~---------------a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNEDR---------------AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTB---------------CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCCC---------------CccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 588899999999999999997542 1234457788665433222222 35789999997
No 201
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.68 E-value=0.00043 Score=68.38 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=26.0
Q ss_pred cEEEECCCCCchhHHHHHHh---ccccCCCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGGD 337 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~---g~~~~~~G~i 337 (601)
.++++|+||||||||+++|+ |+..++.|.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 46779999999999999999 9988877754
No 202
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.66 E-value=0.00071 Score=61.41 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.+++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 57889999999999999998643
No 203
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.65 E-value=0.00041 Score=64.85 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.4
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.++++|+||+|||||+++|++...+..|
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 3566999999999999999998765444
No 204
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.63 E-value=0.0035 Score=58.37 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.8
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58889999999999999999864
No 205
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.62 E-value=0.0015 Score=61.72 Aligned_cols=94 Identities=13% Similarity=0.169 Sum_probs=55.0
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+... + ..+..++..... ... .......|+++|+||+|+............|... ..
T Consensus 78 ~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~~~~----~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~ 147 (207)
T 1vg8_A 78 YRGADCCVLVFDVTAPNT-F-KTLDSWRDEFLI----QAS-PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS---KN 147 (207)
T ss_dssp GTTCSEEEEEEETTCHHH-H-HTHHHHHHHHHH----HHC-CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH---TT
T ss_pred HhCCcEEEEEEECCCHHH-H-HHHHHHHHHHHH----hcc-cccCCCCcEEEEEECCCCcccccCHHHHHHHHHh---cC
Confidence 456899999999987532 1 223333221100 000 0000113799999999998544444444444321 22
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+ ..++.+|+..+.|...+++.+..
T Consensus 148 ~----~~~~~~Sa~~g~gi~~l~~~l~~ 171 (207)
T 1vg8_A 148 N----IPYFETSAKEAINVEQAFQTIAR 171 (207)
T ss_dssp S----CCEEECBTTTTBSHHHHHHHHHH
T ss_pred C----ceEEEEeCCCCCCHHHHHHHHHH
Confidence 2 35788999999999888877743
No 206
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.61 E-value=0.0017 Score=72.84 Aligned_cols=119 Identities=22% Similarity=0.204 Sum_probs=75.0
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|.+++|+|+.+.............. .. + .|+++|+||+|+...+ ...+.+ +....
T Consensus 91 ~l~~aD~aILVVDa~~gv~~qt~~~~~~~~----------~~----~-ipiIvViNKiDl~~a~--~~~v~~---ei~~~ 150 (599)
T 3cb4_D 91 SLAACEGALLVVDAGQGVEAQTLANCYTAM----------EM----D-LEVVPVLNKIDLPAAD--PERVAE---EIEDI 150 (599)
T ss_dssp HHHHCSEEEEEEETTTCCCTHHHHHHHHHH----------HT----T-CEEEEEEECTTSTTCC--HHHHHH---HHHHH
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHH----------HC----C-CCEEEeeeccCccccc--HHHHHH---HHHHH
Confidence 344589999999999876543222222111 11 2 3899999999997642 222222 22223
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccC-----C--cEEEEC---CCCCchhHHHHHHhccccC
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR-----G--NVWAIG---AQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~-----G--~v~ivG---~nGaGKSTLLn~L~g~~~~ 332 (601)
.+. ...+++.+|+.++.|...+++.+......+ + ...+.. .++.|+.++++.+.|.+..
T Consensus 151 lg~-~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~ 219 (599)
T 3cb4_D 151 VGI-DATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRK 219 (599)
T ss_dssp TCC-CCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEES
T ss_pred hCC-CcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEec
Confidence 342 234688999999999999988875543221 1 223333 2789999999999988765
No 207
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.60 E-value=0.00089 Score=64.98 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=33.3
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeecccc-chhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLP-AQAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~-~~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|++.. +. .++.+++|.+......... ....++|+||...
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~---------------~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN---------------VD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC---------------EE-EECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---------------Cc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 68889999999999999998632 11 2234555543322111111 2357899999854
No 208
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.59 E-value=0.0014 Score=61.45 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=56.4
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC---CCChhHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS---SLSPTRFEHWVRQ 268 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~---~~~~~~l~~w~~~ 268 (601)
.....+|.+++|+|+.+.. ++......++... . ... ...|+++|+||+|+... .........|.
T Consensus 90 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~-~----~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-- 156 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRT-SFDNISTKWEPEI-K----HYI-----DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLC-- 156 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHHHHHHTHHHHH-H----HHC-----TTSEEEEEEECGGGCCTTTTCCCHHHHHHHH--
T ss_pred hhccCCcEEEEEEECCCHH-HHHHHHHHHHHHH-H----HhC-----CCCCEEEEEEChhhccCCCCcccHHHHHHHH--
Confidence 3456789999999998853 2221112222211 0 011 12389999999999853 23334444443
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+..+ ...++.+|+..+.|..++++.+...
T Consensus 157 --~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 157 --QKLG---CVAYIEASSVAKIGLNEVFEKSVDC 185 (194)
T ss_dssp --HHHT---CSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred --HhcC---CCEEEEeecCCCCCHHHHHHHHHHH
Confidence 3344 2347889999999999888877443
No 209
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.59 E-value=0.0013 Score=70.00 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=54.5
Q ss_pred hccCCcEEEEEEeCCCCC-CCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHH---HHH
Q 007511 193 ASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHW---VRQ 268 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~-~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w---~~~ 268 (601)
.+..+|.+++|+|+.+.. .........++... + .+|+++|+||+|+... .....+ +.+
T Consensus 95 ~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~----------~----~~~iivviNK~Dl~~~----~~~~~~~~~i~~ 156 (403)
T 3sjy_A 95 GAALMDGAILVVAANEPFPQPQTREHFVALGII----------G----VKNLIIVQNKVDVVSK----EEALSQYRQIKQ 156 (403)
T ss_dssp HHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH----------T----CCCEEEEEECGGGSCH----HHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc----------C----CCCEEEEEECccccch----HHHHHHHHHHHH
Confidence 345699999999999864 22222222222211 1 1379999999999853 222222 223
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+++..+. ....++.+|+..+.|...+++.+.+
T Consensus 157 ~l~~~~~-~~~~ii~vSA~~g~gi~~L~~~l~~ 188 (403)
T 3sjy_A 157 FTKGTWA-ENVPIIPVSALHKINIDSLIEGIEE 188 (403)
T ss_dssp HHTTSTT-TTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHhhCC-CCCEEEEEECCCCcChHHHHHHHHH
Confidence 3322221 1235888999999998888888754
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.58 E-value=0.00061 Score=68.04 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=31.9
Q ss_pred EEe-Eeec-CCccccchhhhhcccC---C-cEEEECCCCCchhHHHHHHhccc
Q 007511 284 VSA-VKNW-GLKSLIDDVVDLAGKR---G-NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 284 vSa-~kg~-G~~~LL~~I~~l~~~~---G-~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++ .+.| +...+++++ ++.+.+ | .++++|++||||||+.+.|++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~-~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKK-AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------CHHHHHH-HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhh-hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 344 5566 667799999 888776 6 56779999999999999999855
No 211
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.57 E-value=0.00087 Score=63.25 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.3
Q ss_pred cEEEECCCCCchhHHHHHHhcccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
.++++|+||||||||+|.|+|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 577899999999999999998764
No 212
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.57 E-value=0.0013 Score=60.81 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 213
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.56 E-value=0.001 Score=61.04 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 214
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.56 E-value=0.00077 Score=64.31 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=27.4
Q ss_pred cccchhhhhcccCCc-EEEECCCCCchhHHHHHHhcccc
Q 007511 294 SLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
...+.. .+...+|. ++++|+||||||||.++|++.+.
T Consensus 13 ~~~~~~-~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 13 EKVDRQ-RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CHHHHH-HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHH-HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444 44445665 55699999999999999998874
No 215
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.56 E-value=0.00036 Score=75.92 Aligned_cols=58 Identities=34% Similarity=0.477 Sum_probs=33.9
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc-hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA-QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~-~~~llDtpGL~~ 380 (601)
.|+++|.+|||||||+|.|++... ...+..|++|.+.......+.+ ...++||+|+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~---------------a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDR---------------AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHB---------------SCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc---------------ccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 588899999999999999997531 1233447777654322211222 256899999865
No 216
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.54 E-value=0.0011 Score=60.97 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=20.5
Q ss_pred CcEEEECCCCCchhHHHHHHhcc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
-.|+++|.+|||||||+|.+++.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36888999999999999999864
No 217
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0017 Score=60.85 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=54.3
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-------------CC
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-------------~~ 257 (601)
.....+|.+++|+|+.+.. ++. .+. .++... . ... .+ .|+++|+||+|+... ..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~----~~~----~~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 152 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPA-SFQ-NVKEEWVPEL-K----EYA----PN-VPFLLIGTQIDLRDDPKTLARLNDMKEKPI 152 (194)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-H----HHS----TT-CCEEEEEECTTSTTCHHHHHHHTTTTCCCC
T ss_pred HhcCCCCEEEEEEECCCHH-HHH-HHHHHHHHHH-H----HhC----CC-CCEEEEEEChhhcccccchhhcccccCccc
Confidence 3456789999999998753 221 222 222211 0 010 12 389999999999863 22
Q ss_pred ChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 258 ~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.......|. +..+ ...++.+|+..+.|.+++++.+.
T Consensus 153 ~~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 153 CVEQGQKLA----KEIG---ACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp CHHHHHHHH----HHHT---CSCEEECCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHH----HHcC---CcEEEEeeCCCCCCHHHHHHHHH
Confidence 223334443 3333 23578899999999988887763
No 218
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.52 E-value=0.0027 Score=58.08 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=57.9
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
......+|.+++|+|+.+.. ++ ..+..++.... .. ..... ....|+++|+||+|+............|...
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~-~~---~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-- 144 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQ-SF-QNLSNWKKEFI-YY---ADVKE-PESFPFVILGNKIDISERQVSTEEAQAWCRD-- 144 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHH-HH-HTHHHHHHHHH-HH---HTCSC-TTTSCEEEEEECTTCSSCSSCHHHHHHHHHH--
T ss_pred HHHHhcCCEEEEEEECcCHH-HH-HHHHHHHHHHH-HH---ccccc-cCCCcEEEEEECCcccccccCHHHHHHHHHh--
Confidence 34566799999999998754 11 22333332110 00 00000 0123899999999998554444555555432
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ...++.+|+..+.|..++++.+..
T Consensus 145 --~~---~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 145 --NG---DYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp --TT---CCCEEECCTTTCTTHHHHHHHHHH
T ss_pred --cC---CceEEEEeCCCCCCHHHHHHHHHH
Confidence 22 135788999999999888877743
No 219
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.51 E-value=0.0016 Score=71.63 Aligned_cols=66 Identities=11% Similarity=0.020 Sum_probs=53.7
Q ss_pred cCCccCCC-CHHHHHHhcccccc--CC--CEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEE------EeecCE
Q 007511 381 PNQITTRL-TREEQKLVNINKEL--KP--RTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVT------VWASPY 442 (601)
Q Consensus 381 ~~~~~~~L-SgGe~qrv~iaraL--~P--~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~------~~ad~v 442 (601)
..+.+..| ||||+|||+||++| +| ++++| |+.....+..+++.+.. +.+++.++ .+||++
T Consensus 390 ~~~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~~~d~~ 467 (517)
T 4ad8_A 390 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAARAHHH 467 (517)
T ss_dssp CCCBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHHHSSEE
T ss_pred CcccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHhCCEE
Confidence 34567888 99999999999998 88 99998 88899999999998765 45666433 368999
Q ss_pred EEeecc
Q 007511 443 LPLHMG 448 (601)
Q Consensus 443 l~l~~G 448 (601)
++++.+
T Consensus 468 ~~~~~~ 473 (517)
T 4ad8_A 468 YKVEKQ 473 (517)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 999654
No 220
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.51 E-value=0.0013 Score=63.28 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCc-EEEECCCCCchhHHHHHHhccccC
Q 007511 306 RGN-VWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 306 ~G~-v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
+|. ++++||||||||||++.|++..++
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 455 455999999999999999998754
No 221
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.50 E-value=0.0013 Score=59.65 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999874
No 222
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.50 E-value=0.001 Score=62.92 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.8
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++|||||||+|.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57889999999999999999865
No 223
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.50 E-value=0.0021 Score=60.21 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=56.1
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhc-CCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH-
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKE-GKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR- 269 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~-gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~- 269 (601)
..+..+|.+++|+|+.+.. ++ ..+.+++....... ..+. .......|+++|+||+|+.... ....+...+...
T Consensus 82 ~~~~~~d~ii~v~D~~~~~-s~-~~~~~~~~~~~~~~--~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~ 156 (199)
T 4bas_A 82 TYYDNIDAVIFVVDSSDHL-RL-CVVKSEIQAMLKHE--DIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILDLTT 156 (199)
T ss_dssp GGCTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTSH--HHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHTHHH
T ss_pred HHHhcCCEEEEEEECCcHH-HH-HHHHHHHHHHHhCh--hhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhcchh
Confidence 3456799999999999864 22 22333332211100 0000 0000023899999999998652 223333332211
Q ss_pred H-HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 270 A-REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 270 ~-~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
. +..+ ..++.+|+..+.|+.++++.+..
T Consensus 157 ~~~~~~----~~~~~~Sa~~g~gv~~l~~~l~~ 185 (199)
T 4bas_A 157 LMGDHP----FVIFASNGLKGTGVHEGFSWLQE 185 (199)
T ss_dssp HHTTSC----EEEEECBTTTTBTHHHHHHHHHH
T ss_pred hccCCe----eEEEEeeCCCccCHHHHHHHHHH
Confidence 1 1122 36788999999999988887744
No 224
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=96.46 E-value=0.00091 Score=62.97 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=47.2
Q ss_pred CCccCCCCHHHHHHhcccccc--C----CCEEEe-------ccchHHHHHHHHHHHHHhcCceEEE------EEEeecCE
Q 007511 382 NQITTRLTREEQKLVNINKEL--K----PRTYRI-------KAGHSIHIAGLMRMDVEESSVESIY------VTVWASPY 442 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL--~----P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~------~~~~ad~v 442 (601)
.+.+..|||||+||+++|+++ . |++++| |+.+...+..+++....+ + +++. +..+||++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~-~~ivith~~~~~~~ad~i 136 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-S-QFIVITLRDVMMANADKI 136 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-S-EEEEECSCHHHHTTCSEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-C-EEEEEEecHHHHHhCCEE
Confidence 456788999999999999998 2 588888 888889999999876543 3 3332 22467888
Q ss_pred EEee
Q 007511 443 LPLH 446 (601)
Q Consensus 443 l~l~ 446 (601)
+.+.
T Consensus 137 ~~v~ 140 (173)
T 3kta_B 137 IGVS 140 (173)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7553
No 225
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.45 E-value=0.0018 Score=62.28 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCc-EEEECCCCCchhHHHHHHhcccc
Q 007511 306 RGN-VWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 306 ~G~-v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
+|. ++++||||||||||++.|++..+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 454 55699999999999999998764
No 226
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.45 E-value=0.0017 Score=59.76 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58889999999999999998743
No 227
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.44 E-value=0.0013 Score=60.20 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 228
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.43 E-value=0.00081 Score=61.24 Aligned_cols=95 Identities=18% Similarity=0.142 Sum_probs=53.4
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++. .+..++...... ... ...|+++|+||+|+.... ....+.... ..
T Consensus 70 ~~~~~~d~ii~v~d~~~~~-s~~-~~~~~~~~~~~~----~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~---~~ 135 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRD-RIG-ISKSELVAMLEE----EEL----RKAILVVFANKQDMEQAM-TSSEMANSL---GL 135 (171)
T ss_dssp GGCTTCSEEEEEEETTCCT-THH-HHHHHHHHHHTC----GGG----TTCEEEEEEECTTSTTCC-CHHHHHHHH---TG
T ss_pred HHhccCCEEEEEEECCCHH-HHH-HHHHHHHHHHhc----hhh----CCCEEEEEEECCCCcCCC-CHHHHHHHh---Cc
Confidence 3456799999999999864 332 233333221100 000 123899999999997642 222222221 11
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
......-..++.+|+..+.|..++++.+.
T Consensus 136 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 164 (171)
T 1upt_A 136 PALKDRKWQIFKTSATKGTGLDEAMEWLV 164 (171)
T ss_dssp GGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred hhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence 10000112577889999999888887763
No 229
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.42 E-value=0.0019 Score=58.16 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999964
No 230
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.41 E-value=0.0064 Score=64.80 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+..+|.+++|+|+.+... .+...+.+... . .. +.+++++|+||+|+...+..... .+.++++++
T Consensus 100 ~~~~~~D~~ilVvda~~g~~--~~qt~e~l~~~-~------~l----~~~~iivv~NK~Dl~~~~~~~~~-~~~i~~~l~ 165 (408)
T 1s0u_A 100 SGASLMDGAILVIAANEPCP--QPQTKEHLMAL-E------IL----GIDKIIIVQNKIDLVDEKQAEEN-YEQIKEFVK 165 (408)
T ss_dssp TTCSCCSEEEEEEETTSCSS--CHHHHHHHHHH-H------HT----TCCCEEEEEECTTSSCTTTTTTH-HHHHHHHHT
T ss_pred HhHhhCCEEEEEEECCCCCC--CchhHHHHHHH-H------Hc----CCCeEEEEEEccCCCCHHHHHHH-HHHHHHHHh
Confidence 44557899999999998531 12222222111 0 01 12379999999999865321112 222333333
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.... ....++.+|+..+.|...|++.+..
T Consensus 166 ~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~ 194 (408)
T 1s0u_A 166 GTIA-ENAPIIPISAHHEANIDVLLKAIQD 194 (408)
T ss_dssp TSTT-TTCCEEEC------CHHHHHHHHHH
T ss_pred hcCC-CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 2211 1236889999999999988888754
No 231
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.40 E-value=0.0014 Score=59.90 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5888999999999999999864
No 232
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.38 E-value=0.00093 Score=71.22 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
++++||.+|||||||+|+|+|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47889999999999999999753
No 233
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.38 E-value=0.00094 Score=63.39 Aligned_cols=35 Identities=34% Similarity=0.512 Sum_probs=28.0
Q ss_pred ccccchhhhhcccCCcEEEECCCCCchhHHHHHHhc
Q 007511 293 KSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g 328 (601)
..+++.+ ++.....+|+++|.+|||||||+|.+.+
T Consensus 13 ~~~l~~~-~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFL-GLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CHHHHHH-TCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHh-hccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456666 5555666889999999999999999986
No 234
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.37 E-value=0.0021 Score=61.76 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=57.0
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCC-------------CCCC
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------------SSLS 258 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp-------------~~~~ 258 (601)
.....+|.+++|+|+.+.. ++...+..++.... ... ...|+++|+||+||.. ....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~-----~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 162 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPE-TVDSALKKWRTEIL-----DYC-----PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPIS 162 (214)
T ss_dssp GGCTTCSEEEEEEETTCTH-HHHHHHTHHHHHHH-----HHC-----TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred HHcCCCeEEEEEEECcCHH-HHHHHHHHHHHHHH-----HhC-----CCCCEEEEEEChhhccchhhhhhhcccccCccC
Confidence 3456799999999999853 33322333333210 011 1238999999999975 2234
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecC-Cccccchhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWG-LKSLIDDVVD 301 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G-~~~LL~~I~~ 301 (601)
......|.. ..+ ...++.+|+..+.| +..+++.+..
T Consensus 163 ~~~~~~~~~----~~~---~~~~~e~SA~~g~g~v~~lf~~l~~ 199 (214)
T 3q3j_B 163 YEQGCAIAK----QLG---AEIYLEGSAFTSEKSIHSIFRTASM 199 (214)
T ss_dssp HHHHHHHHH----HHT---CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcC---CCEEEEeccCCCcccHHHHHHHHHH
Confidence 444455543 334 23577899999998 8888877744
No 235
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.36 E-value=0.0014 Score=59.54 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999964
No 236
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.36 E-value=0.0019 Score=59.16 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999974
No 237
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.35 E-value=0.0018 Score=60.56 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
No 238
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.33 E-value=0.0021 Score=58.29 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.+++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5788999999999999999964
No 239
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.33 E-value=0.0041 Score=67.86 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=56.0
Q ss_pred hhccCCcEEEEEEeCCCCCC--C--ccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDG--S--FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWV 266 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~--s--~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~ 266 (601)
..+..+|++++|+|+.+... . ......+.+... ... +.+++++|+||+|+...+ ...+.+..++
T Consensus 130 ~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-------~~~----~~~~iIvviNK~Dl~~~~~~~~~~i~~~~ 198 (483)
T 3p26_A 130 MGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSL----GIHNLIIAMNKMDNVDWSQQRFEEIKSKL 198 (483)
T ss_dssp HHHTTCSEEEEEEECCC------CCCCHHHHHHHHHH-------HHT----TCCCEEEEEECGGGGTTCHHHHHHHHHHH
T ss_pred HhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHH-------HHc----CCCcEEEEEECcCcccchHHHHHHHHHHH
Confidence 34567999999999998532 1 122333322211 011 123699999999998632 1123345555
Q ss_pred HHHHHHcCCCc-cceEEEEEeEeecCCccccch
Q 007511 267 RQRAREDGISK-ITKLHFVSAVKNWGLKSLIDD 298 (601)
Q Consensus 267 ~~~~~~~g~~~-~~~V~lvSa~kg~G~~~LL~~ 298 (601)
..+++..|... ...++.+|+..+.|..++...
T Consensus 199 ~~~l~~~g~~~~~~~~i~iSA~~g~gi~el~~~ 231 (483)
T 3p26_A 199 LPYLVDIGFFEDNINWVPISGFSGEGVYKIEYT 231 (483)
T ss_dssp HHHHHHHTCCGGGEEEEECCSSSCTTSSSSCCC
T ss_pred HHHHHHcCCCcccceEEEEeeecCCCccccCcc
Confidence 55555555321 236788999999998876543
No 240
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.33 E-value=0.0022 Score=60.35 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|||||||+|.+++.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 241
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.32 E-value=0.0025 Score=71.62 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=34.2
Q ss_pred cCCccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCC
Q 007511 290 WGLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (601)
Q Consensus 290 ~G~~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~ 334 (601)
+|...+++.+ ++.+..| .+.++|++|+|||||+++|++...+..
T Consensus 44 ~G~~~~l~~l-~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 44 IGQEHAVEVI-KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp CSCHHHHHHH-HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ECchhhHhhc-cccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 4566677777 5555555 466699999999999999999987665
No 242
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.32 E-value=0.0053 Score=57.73 Aligned_cols=96 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCC-C-CCChhHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-S-SLSPTRFEHWVR 267 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp-~-~~~~~~l~~w~~ 267 (601)
.......+|.+++|+|+.+.. ++ ..+..++.... ...... ....|+++|+||+|+.. . .........|.
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~~~-~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~- 160 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSME-SF-ESCKAWFELLK-----SARPDR-ERPLRAVLVANKTDLPPQRHQVRLDMAQDWA- 160 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHCSCT-TSCCEEEEEEECC-------CCCHHHHHHHH-
T ss_pred HHHHHhhCcEEEEEEECCCHH-HH-HHHHHHHHHHH-----Hhhccc-ccCCcEEEEEECcccchhhccCCHHHHHHHH-
Confidence 445567799999999998754 22 23334433210 011000 01248999999999986 3 33334455543
Q ss_pred HHHHHcCCCccceEEEEEeEe-ecCCccccchhhh
Q 007511 268 QRAREDGISKITKLHFVSAVK-NWGLKSLIDDVVD 301 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~k-g~G~~~LL~~I~~ 301 (601)
+..+ ..++.+|+.. +.|...+++.+..
T Consensus 161 ---~~~~----~~~~~~Sa~~~~~gi~~l~~~i~~ 188 (208)
T 2yc2_C 161 ---TTNT----LDFFDVSANPPGKDADAPFLSIAT 188 (208)
T ss_dssp ---HHTT----CEEEECCC-------CHHHHHHHH
T ss_pred ---HHcC----CEEEEeccCCCCcCHHHHHHHHHH
Confidence 3444 3678899999 9999988887743
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.32 E-value=0.001 Score=65.79 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.4
Q ss_pred cccchhhhhcccCCcEEEECCCCCchhHHHHHHhccc
Q 007511 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.+++++ ++...+| ++++|+||+|||||+++|++..
T Consensus 39 ~~~~~~-~~~~~~g-~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 39 SRFHEM-GARIPKG-VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHT-TCCCCSE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHc-CCCCCCe-EEEECCCCCCHHHHHHHHHHHh
Confidence 355666 5666666 8889999999999999999876
No 244
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.31 E-value=0.0021 Score=58.99 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=51.5
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|++++|+|+.+... ....+.+.... .. + .|+++|+||+|+... ....+..++. ..
T Consensus 76 ~~~~d~~i~v~d~~~~~~---~~~~~~l~~~~-------~~----~-~p~ilv~nK~Dl~~~--~~~~~~~~~~----~~ 134 (178)
T 2lkc_A 76 AQVTDIVILVVAADDGVM---PQTVEAINHAK-------AA----N-VPIIVAINKMDKPEA--NPDRVMQELM----EY 134 (178)
T ss_dssp CCCCCEEEEEEETTCCCC---HHHHHHHHHHG-------GG----S-CCEEEEEETTTSSCS--CHHHHHHHHT----TT
T ss_pred HhhCCEEEEEEECCCCCc---HHHHHHHHHHH-------hC----C-CCEEEEEECccCCcC--CHHHHHHHHH----hc
Confidence 456899999999987542 22222222110 11 2 379999999999763 2233433332 11
Q ss_pred CCC--cc---ceEEEEEeEeecCCccccchhh
Q 007511 274 GIS--KI---TKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~--~~---~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+.. .. ..++.+|+..+.|..++++.+.
T Consensus 135 ~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 166 (178)
T 2lkc_A 135 NLVPEEWGGDTIFCKLSAKTKEGLDHLLEMIL 166 (178)
T ss_dssp TCCBTTTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CcChhHcCCcccEEEEecCCCCCHHHHHHHHH
Confidence 110 11 3678899999999888877763
No 245
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.31 E-value=0.0071 Score=65.00 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=54.5
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH---HHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR---FEHWVRQR 269 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~---l~~w~~~~ 269 (601)
.+..+|.+++|+|+.+...........++.. . +.+++++|+||+|+...+ ... +...+..+
T Consensus 124 ~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~----------~----~~~~iIvviNK~Dl~~~~--~~~~~~i~~~~~~~ 187 (434)
T 1zun_B 124 GASTCDLAIILVDARYGVQTQTRRHSYIASL----------L----GIKHIVVAINKMDLNGFD--ERVFESIKADYLKF 187 (434)
T ss_dssp HHTTCSEEEEEEETTTCSCHHHHHHHHHHHH----------T----TCCEEEEEEECTTTTTSC--HHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHH----------c----CCCeEEEEEEcCcCCccc--HHHHHHHHHHHHHH
Confidence 3467999999999998654322222222211 1 123689999999998532 222 33334444
Q ss_pred HHHcCC-CccceEEEEEeEeecCCccccchh
Q 007511 270 AREDGI-SKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 270 ~~~~g~-~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
++..+. .....++.+|+..+.|..++....
T Consensus 188 ~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~~ 218 (434)
T 1zun_B 188 AEGIAFKPTTMAFVPMSALKGDNVVNKSERS 218 (434)
T ss_dssp HHTTTCCCSEEEEEECCTTTCTTTSSCCTTC
T ss_pred HHHhCCCccCceEEEEeccCCCCcccccccC
Confidence 555441 012357889999999988765543
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.31 E-value=0.0016 Score=61.23 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=18.2
Q ss_pred EEEECCCCCchhHHHHHHhc
Q 007511 309 VWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g 328 (601)
++++|+||||||||++.|++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 45699999999999999987
No 247
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.30 E-value=0.0061 Score=54.54 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=54.4
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
..+|.+++|+|+.+.. ++ ..+..++.... .+... ...|+++|+||+|+.+.........++. +..+
T Consensus 73 ~~~~~~i~v~d~~~~~-~~-~~~~~~~~~i~-----~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~----~~~~ 138 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTK-SF-EDIHQYREQIK-----RVKDS---DDVPMVLVGNKSDLAARTVESRQAQDLA----RSYG 138 (166)
T ss_dssp HHCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHH----HHHT
T ss_pred ccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcCC---CCCcEEEEEEchhhhhcccCHHHHHHHH----HHcC
Confidence 3589999999998743 11 22333332211 11110 1238999999999987544444444443 3334
Q ss_pred CCccceEEEEEeEeecCCccccchhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..++.+|+..+.|..++++.+.
T Consensus 139 ----~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 139 ----IPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp ----CCEEEECTTTCTTHHHHHHHHH
T ss_pred ----CeEEEecCCCCCCHHHHHHHHH
Confidence 2588899999999888887763
No 248
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.30 E-value=0.0018 Score=67.74 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=23.8
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.+.++|++|||||||+|.|+|...+..|
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~~~~~ 103 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLTERGH 103 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence 4677999999999999999998766554
No 249
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.29 E-value=0.0034 Score=57.63 Aligned_cols=89 Identities=20% Similarity=0.271 Sum_probs=55.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+.+++..... . .. ...|+++|+||+|+... .........| ++.
T Consensus 82 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~--~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~ 146 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQA-SF-ERAKKWVQELQA-----Q--GN--PNMVMALAGNKSDLLDARKVTAEDAQTY----AQE 146 (181)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH-----H--SC--TTCEEEEEEECTTCTTTCCSCHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----h--cC--CCCcEEEEEECCcccccccCCHHHHHHH----HHH
Confidence 45689999999998743 11 223333332110 0 10 12479999999999754 2333344444 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|...+++.+..
T Consensus 147 ~~----~~~~~~Sa~~g~gi~~l~~~l~~ 171 (181)
T 2efe_B 147 NG----LFFMETSAKTATNVKEIFYEIAR 171 (181)
T ss_dssp TT----CEEEECCSSSCTTHHHHHHHHHH
T ss_pred cC----CEEEEEECCCCCCHHHHHHHHHH
Confidence 44 25788999999999888887743
No 250
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.28 E-value=0.0054 Score=57.03 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=56.2
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++ ..+..++... ..+... ...|+++|+||+|+.........+.++..
T Consensus 88 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i-----~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---- 153 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSK-SF-ADINLYREQI-----KRVKDS---DDVPMVLVGNKCDLPTRTVDTKQAHELAK---- 153 (190)
T ss_dssp --CTTCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHHTC---SCCCEEEEEECTTCSCCCSCHHHHHHHHH----
T ss_pred HhhCcCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHHhCC---CCCeEEEEEECCcCCcccCCHHHHHHHHH----
Confidence 3456789999999998854 21 2233333221 011110 12389999999999875444445555543
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+. .++.+|+..+.|..++++.+.
T Consensus 154 ~~~~----~~~~~Sa~~~~gi~~l~~~l~ 178 (190)
T 3con_A 154 SYGI----PFIETSAKTRQGVEDAFYTLV 178 (190)
T ss_dssp HHTC----CEEECCTTTCTTHHHHHHHHH
T ss_pred HcCC----eEEEEeCCCCCCHHHHHHHHH
Confidence 3342 578899999999888887764
No 251
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.28 E-value=0.0013 Score=60.14 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.++++|++|+|||||+++|++...+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4677999999999999999998754
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.28 E-value=0.0017 Score=61.93 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCc-EEEECCCCCchhHHHHHHhccc
Q 007511 306 RGN-VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 306 ~G~-v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|. ++++|+||||||||+++|++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 454 5569999999999999999876
No 253
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.28 E-value=0.0033 Score=59.66 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=57.0
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~ 270 (601)
.....+|.+++|+|+.+.. ++ ..+..++.... ... . ...|+++|+||+|+... ......+..|.
T Consensus 97 ~~~~~~d~iilv~D~~~~~-s~-~~~~~~~~~i~-----~~~-~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~---- 161 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRS-SF-LSVPHWIEDVR-----KYA-G---SNIVQLLIGNKSDLSELREVSLAEAQSLA---- 161 (201)
T ss_dssp HHHTTCSEEEEEEETTBHH-HH-HTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCGGGCCSCHHHHHHHH----
T ss_pred HHHhhCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----Hhc-C---CCCCEEEEEECCccccccccCHHHHHHHH----
Confidence 3456799999999998753 21 22333333211 000 0 12489999999999753 33344455443
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+..+ +..++.+|+..+.|+.++++.+..
T Consensus 162 ~~~~---~~~~~~~SA~~g~gi~~l~~~l~~ 189 (201)
T 2hup_A 162 EHYD---ILCAIETSAKDSSNVEEAFLRVAT 189 (201)
T ss_dssp HHTT---CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHcC---CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3334 236788999999999888877743
No 254
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.27 E-value=0.022 Score=61.21 Aligned_cols=113 Identities=14% Similarity=0.178 Sum_probs=64.3
Q ss_pred hhccCCcEEEEEEeCCCCCCCcc------HHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCCh---hHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFP------RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSP---TRF 262 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~------~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~---~~l 262 (601)
..+..+|.+++|+|+.+ +++. ....+.+..+ ... +.+++++|+||+|+...+.+. ..+
T Consensus 103 ~~~~~aD~~ilVvDa~~--gsfe~~~~~~~qt~~~~~~~-------~~~----~~~~iivviNK~Dl~~~~~~~~~~~~~ 169 (435)
T 1jny_A 103 TGASQADAAILVVSAKK--GEYEAGMSVEGQTREHIILA-------KTM----GLDQLIVAVNKMDLTEPPYDEKRYKEI 169 (435)
T ss_dssp HTSSCCSEEEEEEECST--THHHHHHSTTCHHHHHHHHH-------HHT----TCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred hhhhhcCEEEEEEECCC--CccccccccchHHHHHHHHH-------HHc----CCCeEEEEEEcccCCCccccHHHHHHH
Confidence 45677999999999998 3221 1222222111 011 123689999999998642222 233
Q ss_pred HHHHHHHHHHcCCCc-cceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCCchhHHHHHHhccccC
Q 007511 263 EHWVRQRAREDGISK-ITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 263 ~~w~~~~~~~~g~~~-~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.+.++.+++..+... ...++.+|+..+.|..++.... .+ .-| .+|+.+|.....|
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~-~~--------~~g------~~Ll~~l~~~~~p 225 (435)
T 1jny_A 170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENM-KW--------YNG------PTLEEYLDQLELP 225 (435)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSC-TT--------CCS------CCHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecccCcccccccccc-cc--------ccc------hhHHHHHhccCCC
Confidence 444555555555311 1357889999988877665432 11 111 4788887665443
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.27 E-value=0.0012 Score=63.06 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=24.5
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhccccCCCC
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.++. ++++|++|||||||++.|.+.+.+..|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3444 556999999999999999998765544
No 256
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.27 E-value=0.0036 Score=58.23 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=53.8
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+.. ++. .+.+++....... .. ...|+++|+||+|+.... ....+.+++... ..
T Consensus 81 ~~~~d~ii~v~d~~~~~-s~~-~~~~~~~~~~~~~---~~-----~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~--~~ 147 (187)
T 1zj6_A 81 YTNTEFVIVVVDSTDRE-RIS-VTREELYKMLAHE---DL-----RKAGLLIFANKQDVKECM-TVAEISQFLKLT--SI 147 (187)
T ss_dssp HTTCCEEEEEEETTCTT-THH-HHHHHHHHHHTSG---GG-----TTCEEEEEEECTTSTTCC-CHHHHHHHHTGG--GC
T ss_pred hcCCCEEEEEEeCCCHH-HHH-HHHHHHHHHHhch---hh-----CCCeEEEEEECCCCcCCC-CHHHHHHHhChh--hh
Confidence 45699999999999864 332 3333333211000 00 123899999999997532 233333332210 01
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.. .-..++.+|+..+.|..++++.+.+
T Consensus 148 ~~-~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (187)
T 1zj6_A 148 KD-HQWHIQACCALTGEGLCQGLEWMMS 174 (187)
T ss_dssp CS-SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred cC-CCcEEEEccCCCCcCHHHHHHHHHH
Confidence 10 1125778899999998888877743
No 257
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.26 E-value=0.007 Score=54.70 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=54.7
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+... + ..+..++.... ... . ...|+++|+||+|+............|. +..
T Consensus 73 ~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~i~-----~~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 137 (170)
T 1g16_A 73 YRGAMGIILVYDITDERT-F-TNIKQWFKTVN-----EHA-N---DEAQLLLVGNKSDMETRVVTADQGEALA----KEL 137 (170)
T ss_dssp HTTEEEEEEEEETTCHHH-H-HTHHHHHHHHH-----HHS-C---TTCEEEEEEECTTCTTCCSCHHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHHH-H-HHHHHHHHHHH-----Hhc-C---CCCcEEEEEECccCCcCccCHHHHHHHH----HHc
Confidence 346899999999987532 1 22333332210 000 0 1238999999999955444444444443 333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+ ..++.+|+..+.|...+++.+..
T Consensus 138 ~----~~~~~~Sa~~~~gv~~l~~~l~~ 161 (170)
T 1g16_A 138 G----IPFIESSAKNDDNVNEIFFTLAK 161 (170)
T ss_dssp T----CCEEECBTTTTBSHHHHHHHHHH
T ss_pred C----CeEEEEECCCCCCHHHHHHHHHH
Confidence 4 25788999999998888877643
No 258
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.25 E-value=0.0038 Score=57.16 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=54.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. + ...+..++..... . . ...|+++|+||+|+.... ........|. .
T Consensus 78 ~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~~-----~--~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~----~ 141 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAE-S-FVNVKRWLHEINQ-----N--C---DDVCRILVGNKNDDPERKVVETEDAYKFA----G 141 (181)
T ss_dssp GGTTCSEEEEEEETTCHH-H-HHHHHHHHHHHHH-----H--C---TTSEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEECCCHH-H-HHHHHHHHHHHHH-----h--C---CCCCEEEEEECCCCchhcccCHHHHHHHH----H
Confidence 345689999999999842 2 2233334332110 0 0 123899999999987643 2323333333 3
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+ ..++.+|+..+.|...+++.+..
T Consensus 142 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~ 167 (181)
T 3tw8_B 142 QMG----IQLFETSAKENVNVEEMFNCITE 167 (181)
T ss_dssp HHT----CCEEECBTTTTBSHHHHHHHHHH
T ss_pred HcC----CeEEEEECCCCCCHHHHHHHHHH
Confidence 334 25788999999999888877743
No 259
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.25 E-value=0.0026 Score=58.55 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6888999999999999999964
No 260
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.25 E-value=0.0039 Score=58.02 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=53.6
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
+..+|++++|+|+.+.. ++ ..+..++..... .. + .|+++|+||+|+-........+..|.. ..
T Consensus 114 ~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~i~~------~~----~-~piilv~NK~D~~~~~~~~~~~~~~~~----~~ 176 (208)
T 3clv_A 114 YRGATCAIVVFDISNSN-TL-DRAKTWVNQLKI------SS----N-YIIILVANKIDKNKFQVDILEVQKYAQ----DN 176 (208)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH------HS----C-CEEEEEEECTTCC-CCSCHHHHHHHHH----HT
T ss_pred hcCCCEEEEEEECCCHH-HH-HHHHHHHHHHHh------hC----C-CcEEEEEECCCcccccCCHHHHHHHHH----Hc
Confidence 45689999999998753 11 223333332110 01 1 389999999993223334445555543 33
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+ ..++.+|+..+.|..++++.+.
T Consensus 177 ~----~~~~~~Sa~~~~~i~~l~~~l~ 199 (208)
T 3clv_A 177 N----LLFIQTSAKTGTNIKNIFYMLA 199 (208)
T ss_dssp T----CEEEEECTTTCTTHHHHHHHHH
T ss_pred C----CcEEEEecCCCCCHHHHHHHHH
Confidence 4 2678899999999988887763
No 261
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.25 E-value=0.0019 Score=60.48 Aligned_cols=95 Identities=12% Similarity=0.068 Sum_probs=52.6
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.+.. ++ ..+..++...... ... .+ .|+++|+||+|+.... ....+ .......
T Consensus 87 ~~~~~d~ii~v~D~~~~~-s~-~~~~~~~~~~~~~----~~~---~~-~piilv~NK~Dl~~~~-~~~~~---~~~~~~~ 152 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQE-KI-EASKNELHNLLDK----PQL---QG-IPVLVLGNKRDLPGAL-DEKEL---IEKMNLS 152 (188)
T ss_dssp HHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTC----GGG---TT-CCEEEEEECTTSTTCC-CHHHH---HHHTTGG
T ss_pred HHccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhC----ccc---CC-CCEEEEEECCCCccCC-CHHHH---HHHhChh
Confidence 345789999999998853 22 2233333221100 000 12 3899999999997642 22222 2211101
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
........++.+|+..+.|..++++.+..
T Consensus 153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 181 (188)
T 1zd9_A 153 AIQDREICCYSISCKEKDNIDITLQWLIQ 181 (188)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 00001125678899999998888877743
No 262
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0022 Score=60.89 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|||||||+|.|++.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999964
No 263
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0097 Score=56.27 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=54.9
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|++++|+|+.+... ...+..++.... . ... ...|+++|+||+|+............|. +..
T Consensus 90 ~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~-~----~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 154 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERT--FTNIKQWFKTVN-E----HAN----DEAQLLLVGNKSDMETRVVTADQGEALA----KEL 154 (213)
T ss_dssp HTTCSEEEEEEETTCHHH--HHTHHHHHHHHH-H----HTT----TCSEEEEEEECTTCSSCCSCHHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHHHHHH-H----hcC----CCCCEEEEEECCCCcccccCHHHHHHHH----HHc
Confidence 356899999999987532 122333332210 0 000 1238999999999954444434444443 333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+. .++.+|+..+.|...+++.+..
T Consensus 155 ~~----~~~~~Sa~~~~gi~~l~~~l~~ 178 (213)
T 3cph_A 155 GI----PFIESSAKNDDNVNEIFFTLAK 178 (213)
T ss_dssp TC----CEEECBTTTTBSSHHHHHHHHH
T ss_pred CC----EEEEEeCCCCCCHHHHHHHHHH
Confidence 42 5788999999999888877743
No 264
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.23 E-value=0.0017 Score=68.27 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.2
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.|++||++|+|||||+|+|++....
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 5788999999999999999876543
No 265
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.23 E-value=0.016 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999964
No 266
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.23 E-value=0.0024 Score=60.26 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57889999999999999998743
No 267
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.22 E-value=0.0038 Score=57.62 Aligned_cols=88 Identities=18% Similarity=0.174 Sum_probs=53.8
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+.. ++ ..+..++.... .+... ...|+++|+||+|+... .........|. +..
T Consensus 88 ~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~---~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~----~~~ 153 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKA-SF-EHVDRFHQLIL-----RVKDR---ESFPMILVANKVDLMHLRKVTRDQGKEMA----TKY 153 (183)
T ss_dssp HHCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHHTS---SCCCEEEEEECTTCSTTCCSCHHHHHHHH----HHH
T ss_pred hcCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcCC---CCCcEEEEEECCCchhccCcCHHHHHHHH----HHh
Confidence 3589999999998853 21 22333322110 00111 12379999999999763 33444444443 333
Q ss_pred CCCccceEEEEEeE-eecCCccccchhh
Q 007511 274 GISKITKLHFVSAV-KNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~-kg~G~~~LL~~I~ 300 (601)
+ ..++.+|+. .+.|..++++.+.
T Consensus 154 ~----~~~~~~Sa~~~~~~v~~l~~~l~ 177 (183)
T 3kkq_A 154 N----IPYIETSAKDPPLNVDKTFHDLV 177 (183)
T ss_dssp T----CCEEEEBCSSSCBSHHHHHHHHH
T ss_pred C----CeEEEeccCCCCCCHHHHHHHHH
Confidence 4 247889999 8999998887774
No 268
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.21 E-value=0.0029 Score=58.91 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6888999999999999999964
No 269
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.20 E-value=0.015 Score=53.44 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=51.9
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~ 270 (601)
.....+|.+++|+|+.+.. ++ ..+.+++.... .... ...|+++|+||+|+... .........|..
T Consensus 76 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--- 141 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEK-SF-DNIRNWIRNIE-----EHAS----ADVEKMILGNKCDVNDKRQVSKERGEKLAL--- 141 (183)
T ss_dssp TTTTTCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHSC----TTCEEEEEEEC--CCSCCCSCHHHHHHHHH---
T ss_pred HHHhcCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhcC----CCCCEEEEEECccCCccCcCCHHHHHHHHH---
Confidence 3455789999999998843 22 23334433211 0100 12389999999999764 333444555543
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+ ..++.+|+..+.|...+++.+.
T Consensus 142 -~~~----~~~~~~Sa~~~~~i~~l~~~l~ 166 (183)
T 2fu5_C 142 -DYG----IKFMETSAKANINVENAFFTLA 166 (183)
T ss_dssp -HHT----CEEEECCC---CCHHHHHHHHH
T ss_pred -HcC----CeEEEEeCCCCCCHHHHHHHHH
Confidence 334 2578899999999988887773
No 270
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=96.19 E-value=0.0035 Score=68.42 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=57.4
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
...+..+|.+++|+|+.+.......+...++.. .+ . |+++|+||+|+.+.+ ..+.+.+.+++++
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~~----i-p~IvviNK~Dl~~~~-~~~~~~~~l~~~l 154 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHMLILDH----------FN----I-PIIVVITKSDNAGTE-EIKRTEMIMKSIL 154 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH----------TT----C-CBCEEEECTTSSCHH-HHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH----------cC----C-CEEEEEECCCcccch-hHHHHHHHHHHHH
Confidence 344567999999999998654322222222221 12 2 679999999998531 1122333344444
Q ss_pred HHc-CCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 RED-GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~-g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+.. +. ....++.+|+..+.|...+++.+..
T Consensus 155 ~~~~~~-~~~~ii~vSA~~g~gI~~L~~~L~~ 185 (482)
T 1wb1_A 155 QSTHNL-KNSSIIPISAKTGFGVDELKNLIIT 185 (482)
T ss_dssp HHSSSG-GGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred hhhccc-ccceEEEEECcCCCCHHHHHHHHHH
Confidence 443 32 1246888999999998888877744
No 271
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.19 E-value=0.011 Score=63.05 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=22.9
Q ss_pred ccCCcEE-EECCCCCchhHHHHHH--hccccCCCC
Q 007511 304 GKRGNVW-AIGAQNAGKSTLLNAI--AKSVDAGRG 335 (601)
Q Consensus 304 ~~~G~v~-ivG~nGaGKSTLLn~L--~g~~~~~~G 335 (601)
+.+|.++ ++|++|+|||||++.| .+..+++.|
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 3556655 4999999999999955 455555444
No 272
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.19 E-value=0.0027 Score=69.39 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=52.0
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|+|++|+|+.+.....+..+.+.+. + .|+++|+||+||.+. .....+..| .
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l~----------------~-~piivV~NK~DL~~~-~~~~~~~~~----~-- 375 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRKILERIK----------------N-KRYLVVINKVDVVEK-INEEEIKNK----L-- 375 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHHHHHHHT----------------T-SSEEEEEEECSSCCC-CCHHHHHHH----H--
T ss_pred HhhcccEEEEEecCCCCCCHHHHHHHHHhc----------------C-CCEEEEEECcccccc-cCHHHHHHH----h--
Confidence 445699999999998865322222222221 1 279999999999753 222333332 1
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+. ...++.+|++.+.|.+.+++.+.
T Consensus 376 -~~--~~~~i~iSAktg~Gi~eL~~~l~ 400 (482)
T 1xzp_A 376 -GT--DRHMVKISALKGEGLEKLEESIY 400 (482)
T ss_dssp -TC--STTEEEEEGGGTCCHHHHHHHHH
T ss_pred -cC--CCcEEEEECCCCCCHHHHHHHHH
Confidence 10 13578899999999988888773
No 273
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0084 Score=54.89 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=55.8
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~ 270 (601)
.....+|.+++|+|+.+... ...+.+++.... .... ...|+++|+||+|+... .........|.
T Consensus 79 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~---- 143 (180)
T 2g6b_A 79 AYYRDAHALLLLYDVTNKAS--FDNIQAWLTEIH-----EYAQ----HDVALMLLGNKVDSAHERVVKREDGEKLA---- 143 (180)
T ss_dssp CCGGGCSEEEEEEETTCHHH--HHTHHHHHHHHH-----HHSC----TTCEEEEEEECCSTTSCCCSCHHHHHHHH----
T ss_pred HHccCCCEEEEEEECCCHHH--HHHHHHHHHHHH-----HhCC----CCCcEEEEEECcccCcccccCHHHHHHHH----
Confidence 44567899999999987532 122333332210 0000 12389999999999864 23333444443
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+..+ ..++.+|+..+.|...+++.+..
T Consensus 144 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~ 170 (180)
T 2g6b_A 144 KEYG----LPFMETSAKTGLNVDLAFTAIAK 170 (180)
T ss_dssp HHHT----CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HHcC----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 3334 25788999999999888877743
No 274
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.18 E-value=0.0021 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++|||||||.+.|++.+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999876
No 275
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.18 E-value=0.0013 Score=66.07 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=28.7
Q ss_pred cccchhhhhcccCCcEEEECCCCCchhHHHHHHhccc
Q 007511 294 SLIDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.+++++ ++.+.+| ++++|+||+|||||+++|++..
T Consensus 63 ~~l~~~-~~~~~~g-vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 63 SRFHEM-GARIPKG-VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHT-TCCCCCE-EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHc-CCCCCCe-EEEECCCcChHHHHHHHHHHHc
Confidence 456666 6666666 8889999999999999999876
No 276
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.16 E-value=0.0017 Score=60.66 Aligned_cols=96 Identities=13% Similarity=0.081 Sum_probs=53.3
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.+.. ++ ..+..++..... ..... . ...|+++|+||+|+.... ....+.+++.. ..
T Consensus 87 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~----~~~~~-~-~~~piilv~nK~Dl~~~~-~~~~~~~~~~~--~~ 155 (190)
T 2h57_A 87 YYKEGQAIIFVIDSSDRL-RM-VVAKEELDTLLN----HPDIK-H-RRIPILFFANKMDLRDAV-TSVKVSQLLCL--EN 155 (190)
T ss_dssp GGGGCSEEEEEEETTCHH-HH-HHHHHHHHHHHH----STTTT-T-SCCCEEEEEECTTSTTCC-CHHHHHHHHTG--GG
T ss_pred HHhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHh----Chhhc-c-CCCeEEEEEeCcCcccCC-CHHHHHHHhCh--hh
Confidence 445689999999998742 11 222233222110 00000 0 123899999999997532 33344443310 11
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
... .-..++.+|+..+.|..++++.+.
T Consensus 156 ~~~-~~~~~~~~Sa~~~~gi~~l~~~l~ 182 (190)
T 2h57_A 156 IKD-KPWHICASDAIKGEGLQEGVDWLQ 182 (190)
T ss_dssp CCS-SCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccC-CceEEEEccCCCCcCHHHHHHHHH
Confidence 110 113577899999999988887773
No 277
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.16 E-value=0.002 Score=60.63 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=21.0
Q ss_pred cchhhhhcccCCcEEEECCCCCchhHHHHHHhcc
Q 007511 296 IDDVVDLAGKRGNVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 296 L~~I~~l~~~~G~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
++.+ ++.....+|+++|.+|||||||+|.+.+.
T Consensus 14 l~~~-~~~~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 14 LASL-GLWNKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHh-hccCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3444 44445567899999999999999999963
No 278
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.15 E-value=0.0012 Score=65.64 Aligned_cols=29 Identities=31% Similarity=0.283 Sum_probs=24.7
Q ss_pred cEEEECCCCCchhHHHHHHh---ccccCCCCC
Q 007511 308 NVWAIGAQNAGKSTLLNAIA---KSVDAGRGG 336 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~---g~~~~~~G~ 336 (601)
.|+++|++|||||||+++|+ |+..++.|.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~ 60 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSGA 60 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCCc
Confidence 46779999999999999999 877776664
No 279
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.15 E-value=0.017 Score=54.19 Aligned_cols=91 Identities=19% Similarity=0.214 Sum_probs=56.4
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~ 269 (601)
......+|.+++|+|+.+.. ++ ..+..++... ..+.. ...|+++|+||+|+... .........|.
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~i-----~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 140 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEE-SF-NAVQDWSTQI-----KTYSW----DNAQVLLVGNKCDMEDERVVSSERGRQLA--- 140 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHH-HH-HHHHHHHHHH-----HHHSC----SSCEEEEEEECTTCTTSCCSCHHHHHHHH---
T ss_pred HHhhcCCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHhcC----CCCCEEEEEECcccCcccccCHHHHHHHH---
Confidence 34556799999999998753 22 2233333321 01110 12489999999999764 23333444443
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+..+ ..++.+|+..+.|...+++.+.
T Consensus 141 -~~~~----~~~~~~Sa~~~~gi~~l~~~l~ 166 (203)
T 1zbd_A 141 -DHLG----FEFFEASAKDNINVKQTFERLV 166 (203)
T ss_dssp -HHHT----CEEEECBTTTTBSSHHHHHHHH
T ss_pred -HHCC----CeEEEEECCCCCCHHHHHHHHH
Confidence 3334 2578899999999988877763
No 280
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.14 E-value=0.0022 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999998643
No 281
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.14 E-value=0.0067 Score=57.81 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=56.0
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~ 269 (601)
...+..+|.+++|+|+.+... ...+..++... .........|+++|+||+|+... .........|
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i--------~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~---- 167 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQL--------QANAYCENPDIVLIGNKADLPDQREVNERQAREL---- 167 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTC--------CCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH----
T ss_pred HHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHH--------HHhcCcCCCCEEEEEECCccccccccCHHHHHHH----
Confidence 344567999999999987431 12333443321 00000012489999999999753 3333344444
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
++..+ ..++.+|+..+.|...+++.+.
T Consensus 168 ~~~~~----~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 168 ADKYG----IPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp HHHTT----CCEEEEBTTTTBTHHHHHHHHH
T ss_pred HHHCC----CcEEEEECCCCCCHHHHHHHHH
Confidence 33444 2578899999999888877763
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.13 E-value=0.0047 Score=55.76 Aligned_cols=87 Identities=15% Similarity=0.181 Sum_probs=54.4
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... ... + .|+++|+||+|+... .........|. +.
T Consensus 75 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~~-----~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 138 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRE-SF-EAISSWREKVVA-----EVG----D-IPTALVQNKIDLLDDSCIKNEEAEGLA----KR 138 (168)
T ss_dssp HTTCCEEEEEEETTCHH-HH-HTHHHHHHHHHH-----HHC----S-CCEEEEEECGGGGGGCSSCHHHHHHHH----HH
T ss_pred hcCCCEEEEEEECcCHH-HH-HHHHHHHHHHHH-----hCC----C-CCEEEEEECcccCcccccCHHHHHHHH----HH
Confidence 34689999999998743 21 223333322110 111 1 389999999999853 33334444443 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|...+++.+.
T Consensus 139 ~~----~~~~~~Sa~~~~~i~~l~~~l~ 162 (168)
T 1z2a_A 139 LK----LRFYRTSVKEDLNVSEVFKYLA 162 (168)
T ss_dssp HT----CEEEECBTTTTBSSHHHHHHHH
T ss_pred cC----CeEEEEecCCCCCHHHHHHHHH
Confidence 34 2678899999999988887774
No 283
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.13 E-value=0.0022 Score=59.82 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+++++|++|||||||+|.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999854
No 284
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.12 E-value=0.0013 Score=60.52 Aligned_cols=90 Identities=18% Similarity=0.236 Sum_probs=53.3
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-----------CChh
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-----------LSPT 260 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-----------~~~~ 260 (601)
....+|.+++|+|+.+.. ++ ..+. .++... . .... + .|+++|+||+|+.... ....
T Consensus 76 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-~----~~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~ 143 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKA-SY-ENVSKKWIPEL-K----HYAP----G-VPIVLVGTKLDLRDDKQFFIDHPGAVPITTV 143 (182)
T ss_dssp GGTTCSEEEEEEETTCHH-HH-HHHHHTHHHHH-H----HHCT----T-CCEEEEEECHHHHTCHHHHHHC--CCCCCHH
T ss_pred hccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-H----HhCC----C-CCEEEEEechhhhcCcccccccccCCCCCHH
Confidence 445689999999998743 22 1222 222211 0 0101 2 3899999999997542 1222
Q ss_pred HHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 261 RFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 261 ~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
....| .+..+ ...++.+|+..+.|..++++.+..
T Consensus 144 ~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 144 QGEEL----KKLIG---APAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp HHHHH----HHHHT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHH----HHHcC---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 23333 33333 235778999999999888887743
No 285
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.12 E-value=0.0033 Score=58.27 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=53.6
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++ ..+.+++...... ... ...|+++|+||+||... .....+.+++...
T Consensus 84 ~~~~~~d~ii~v~D~~~~~-s~-~~~~~~~~~~~~~----~~~----~~~piilv~NK~Dl~~~-~~~~~i~~~~~~~-- 150 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRE-RI-SVTREELYKMLAH----EDL----RKAGLLIFANKQDVKEC-MTVAEISQFLKLT-- 150 (181)
T ss_dssp GGGTTCCEEEEEEETTCTT-TH-HHHHHHHHHHHTC----GGG----TTCEEEEEEECTTSTTC-CCHHHHHHHTTGG--
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhC----hhh----CCCeEEEEEECCCcccC-CCHHHHHHHhCcc--
Confidence 3456789999999999863 33 2333333321100 000 12389999999999753 2233333332110
Q ss_pred HcCCCccceEEEEEeEeecCCccccchh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
... ..-..++.+|+..+.|..++++.+
T Consensus 151 ~~~-~~~~~~~~~Sa~~g~gi~~l~~~l 177 (181)
T 2h17_A 151 SIK-DHQWHIQACCALTGEGLCQGLEWM 177 (181)
T ss_dssp GCC-SSCEEEEECBTTTTBTHHHHHHHH
T ss_pred ccc-CCceEEEEccCCCCcCHHHHHHHH
Confidence 000 011257788999999988888776
No 286
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.11 E-value=0.0011 Score=61.84 Aligned_cols=94 Identities=17% Similarity=0.138 Sum_probs=52.7
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+.. ++. .+..++..... .. .....|+++|+||+|+.... ....+..+.. ...
T Consensus 87 ~~~~d~ii~v~d~~~~~-s~~-~~~~~~~~~~~-------~~-~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~---~~~ 152 (189)
T 2x77_A 87 FSDTDAVIYVVDSTDRD-RMG-VAKHELYALLD-------ED-ELRKSLLLIFANKQDLPDAA-SEAEIAEQLG---VSS 152 (189)
T ss_dssp STTCCEEEEEEETTCCT-THH-HHHHHHHHHHT-------CS-TTTTCEEEEEEECTTSTTCC-CHHHHHHHTT---GGG
T ss_pred hhcCCEEEEEEeCCCHH-HHH-HHHHHHHHHHh-------hh-hcCCCeEEEEEECCCCcCCC-CHHHHHHHhC---hhh
Confidence 45689999999999864 332 23333322110 00 00124899999999997642 2222322211 010
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
....-..++.+|+..+.|..++++.+..
T Consensus 153 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 180 (189)
T 2x77_A 153 IMNRTWTIVKSSSKTGDGLVEGMDWLVE 180 (189)
T ss_dssp CCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccCCceEEEEccCCCccCHHHHHHHHHH
Confidence 0001125778899999998888877743
No 287
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.11 E-value=0.0066 Score=56.14 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=56.1
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQR 269 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~ 269 (601)
......+|.+++|+|+.+... + ..+..++.... .... ....|+++|+||+|+... ......+..|.
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--- 154 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQS-F-LNVRNWISQLQ-----MHAY---SENPDIVLCGNKSDLEDQRAVKEEEARELA--- 154 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHH-H-HTHHHHHHHHH-----HHSS---SSSCCEEEEEECTTCGGGCCSCHHHHHHHH---
T ss_pred HHHHcCCCEEEEEEECCCHHH-H-HHHHHHHHHHH-----HhcC---CCCCCEEEEEECcccccccccCHHHHHHHH---
Confidence 345667999999999987532 1 22333332210 0000 012389999999999753 33334444443
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
...+ ..++.+|+..+.|...+++.+.
T Consensus 155 -~~~~----~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 155 -EKYG----IPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp -HHHT----CCEEECCTTTCTTHHHHHHHHH
T ss_pred -HHcC----CCEEEEECCCCCCHHHHHHHHH
Confidence 3334 2578899999999888887763
No 288
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.10 E-value=0.0031 Score=56.95 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=52.9
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++ ..+..++...... ... ...|+++|+||+|+.... ....+..+.. .
T Consensus 63 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~~----~~~----~~~piilv~nK~Dl~~~~-~~~~~~~~~~---~ 128 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRE-RV-NEAREELMRMLAE----DEL----RDAVLLVFANKQDLPNAM-NAAEITDKLG---L 128 (164)
T ss_dssp HHTTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTC----GGG----TTCEEEEEEECTTSTTCC-CHHHHHHHTT---G
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHhc----hhh----cCCeEEEEEECcCCcCCC-CHHHHHHHhC---c
Confidence 3456799999999998853 22 2233333321100 000 124899999999997542 2222222211 0
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
......-..++.+|+..+.|..++++.+.
T Consensus 129 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (164)
T 1r8s_A 129 HSLRHRNWYIQATCATSGDGLYEGLDWLS 157 (164)
T ss_dssp GGCSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccccCccEEEEEcccCCCcCHHHHHHHHH
Confidence 10000112477889999999888887773
No 289
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.08 E-value=0.0041 Score=56.97 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=55.0
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC--CCChhHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS--SLSPTRFEHWVRQR 269 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~--~~~~~~l~~w~~~~ 269 (601)
.....+|.+++|+|+.+.. ++ ..+..++..... . ..... ....|+++|+||+|+... .........|.
T Consensus 77 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-~---~~~~~-~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~--- 146 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNAS-SF-ENIKSWRDEFLV-H---ANVNS-PETFPFVILGNKIDAEESKKIVSEKSAQELA--- 146 (182)
T ss_dssp CCSTTCCEEEEEEETTCHH-HH-HTHHHHHHHHHH-H---HCCSC-TTTCCEEEEEECTTSCGGGCCSCHHHHHHHH---
T ss_pred HHhhcCCEEEEEEECCChH-HH-HHHHHHHHHHHH-H---hcccC-cCCCcEEEEEECCccccccccCCHHHHHHHH---
Confidence 4456789999999998853 21 223333322100 0 00000 012389999999999643 12333444443
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+..+ ...++.+|+..+.|.+.+++.+.
T Consensus 147 -~~~~---~~~~~~~Sa~~~~gi~~l~~~l~ 173 (182)
T 1ky3_A 147 -KSLG---DIPLFLTSAKNAINVDTAFEEIA 173 (182)
T ss_dssp -HHTT---SCCEEEEBTTTTBSHHHHHHHHH
T ss_pred -HhcC---CCeEEEEecCCCCCHHHHHHHHH
Confidence 2222 23578899999999988887774
No 290
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.08 E-value=0.0026 Score=60.25 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999998743
No 291
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.08 E-value=0.0028 Score=59.62 Aligned_cols=89 Identities=20% Similarity=0.230 Sum_probs=53.2
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-------------CCC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-------------~~~ 258 (601)
....+|.+++|+|+.+.. ++. .+. .++... ..... + .|+++|+||+|+... ...
T Consensus 88 ~~~~~~~~i~v~d~~~~~-s~~-~~~~~~~~~~-----~~~~~----~-~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 155 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPS-SFQ-NVSEKWVPEI-----RCHCP----K-APIILVGTQSDLREDVKVLIELDKCKEKPVP 155 (201)
T ss_dssp GGTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-----HHHCS----S-SCEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred hcCCCcEEEEEEECCCHH-HHH-HHHHHHHHHH-----HHhCC----C-CCEEEEEECHhhhhchhhhhhhcccccccCC
Confidence 345689999999998753 222 222 232211 00111 2 389999999999752 122
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
......|. +..+ ...++.+|+..+.|...+++.+.
T Consensus 156 ~~~~~~~~----~~~~---~~~~~~~Sa~~g~gi~~l~~~l~ 190 (201)
T 2q3h_A 156 EEAAKLLA----EEIK---AASYIECSALTQKNLKEVFDAAI 190 (201)
T ss_dssp HHHHHHHH----HHHT---CSEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHH----HhcC---CcEEEEEecCCCCCHHHHHHHHH
Confidence 23333333 3333 23678899999999988887763
No 292
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.07 E-value=0.0018 Score=61.58 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=53.7
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-------------C
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------L 257 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-------------~ 257 (601)
.....+|.+++|+|+.+.. ++. .+. .++... . .... + .|+++|+||+|+.... .
T Consensus 97 ~~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~----~~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPA-SFE-NVRAKWYPEV-R----HHCP----N-TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-H----HHCS----S-CCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HHhccCCEEEEEEECCCHH-HHH-HHHHHHHHHH-H----HhCC----C-CCEEEEEechhhccchhhhhhhhccccccc
Confidence 3456799999999998753 221 121 222211 0 0111 2 3899999999998642 1
Q ss_pred ChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 258 ~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
...... .+.+..+ ...++.+|+..+.|..++++.+.
T Consensus 165 ~~~~~~----~~~~~~~---~~~~~~~SA~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 165 TYPQGL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAI 200 (204)
T ss_dssp CHHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHH
T ss_pred cHHHHH----HHHHhcC---CcEEEEeeCCCCCCHHHHHHHHH
Confidence 111222 2333333 34588899999999998887773
No 293
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.06 E-value=0.0038 Score=57.48 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.4
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
+|+++|..|||||||+|.+++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 688899999999999999985
No 294
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.06 E-value=0.0089 Score=62.34 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.7
Q ss_pred CcEEEECCCCCchhHHHHHHhccc
Q 007511 307 GNVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 307 G~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
..|++||..|||||||+|+|+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999865
No 295
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=96.05 E-value=0.005 Score=65.61 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=53.7
Q ss_pred hhccCCcEEEEEEeCCCCC-CCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFD-GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~-~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
..+..+|.+++|+|+.+.. .....+...++.. .+ .+++++|+||+|+...+. .....+.+++++
T Consensus 102 ~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~----------~~----~~~iivviNK~Dl~~~~~-~~~~~~~i~~~l 166 (410)
T 1kk1_A 102 AGASLMDGAILVIAANEPCPRPQTREHLMALQI----------IG----QKNIIIAQNKIELVDKEK-ALENYRQIKEFI 166 (410)
T ss_dssp HCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH----------HT----CCCEEEEEECGGGSCHHH-HHHHHHHHHHHH
T ss_pred hhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH----------cC----CCcEEEEEECccCCCHHH-HHHHHHHHHHHH
Confidence 3445689999999999853 2211222222211 11 237999999999985320 001112223333
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+.... ....++.+|+..+.|...|++.+..
T Consensus 167 ~~~~~-~~~~~i~vSA~~g~gi~~L~~~l~~ 196 (410)
T 1kk1_A 167 EGTVA-ENAPIIPISALHGANIDVLVKAIED 196 (410)
T ss_dssp TTSTT-TTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred HhcCc-CCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 32111 1236888999999998888888754
No 296
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.05 E-value=0.0025 Score=71.18 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|.+|+|||||||.|+|..
T Consensus 40 ~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 40 VVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHhHcCCC
Confidence 46779999999999999999854
No 297
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.03 E-value=0.0042 Score=56.72 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=54.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+..++.... .... ...|+++|+||+|+... ........+|. +
T Consensus 84 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~ 148 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRS-TY-NHLSSWLTDAR-----NLTN----PNTVIILIGNKADLEAQRDVTYEEAKQFA----E 148 (179)
T ss_dssp HHHTCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHSC----TTCEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEeCcCHH-HH-HHHHHHHHHHH-----HhcC----CCCcEEEEEECcccccccccCHHHHHHHH----H
Confidence 345689999999998753 21 22333332210 0110 12389999999999753 33333444443 3
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+ ..++.+|+..+.|..++++.+.
T Consensus 149 ~~~----~~~~~~Sa~~~~gi~~l~~~l~ 173 (179)
T 1z0f_A 149 ENG----LLFLEASAKTGENVEDAFLEAA 173 (179)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 344 2578899999999988887763
No 298
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.01 E-value=0.003 Score=59.27 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.5
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5888999999999999999864
No 299
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.01 E-value=0.0045 Score=57.18 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=54.3
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
..+|.+++|+|+.+.. ++ ..+..++.... .+... ...|+++|+||+|+............+. +..+
T Consensus 74 ~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~----~~~~ 139 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTK-SF-EDIHHYREQIK-----RVKDS---EDVPMVLVGNKCDLPSRTVDTKQAQDLA----RSYG 139 (189)
T ss_dssp HHCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHTTC---SCCCEEEEEECTTSSSCSSCHHHHHHHH----HHHT
T ss_pred hcCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcCC---CCCcEEEEEECccCcccccCHHHHHHHH----HHcC
Confidence 3489999999998742 21 22333322110 01111 1248999999999986554444444443 3334
Q ss_pred CCccceEEEEEeEeecCCccccchhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..++.+|+..+.|..++++.+.
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~l~ 161 (189)
T 4dsu_A 140 ----IPFIETSAKTRQGVDDAFYTLV 161 (189)
T ss_dssp ----CCEEECCTTTCTTHHHHHHHHH
T ss_pred ----CeEEEEeCCCCCCHHHHHHHHH
Confidence 2578899999999988887763
No 300
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.00 E-value=0.0038 Score=58.76 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.6
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999863
No 301
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.00 E-value=0.0027 Score=60.09 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5888999999999999999864
No 302
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.00 E-value=0.0041 Score=59.36 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=51.8
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+... ...+.+++.... .... ...|+++|+||+|+... ....... ..+.+..
T Consensus 83 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~----~~~~~~~ 147 (218)
T 4djt_A 83 IGASGAILFFDVTSRIT--CQNLARWVKEFQ-----AVVG----NEAPIVVCANKIDIKNRQKISKKLV----MEVLKGK 147 (218)
T ss_dssp TTCSEEEEEEETTCHHH--HHTHHHHHHHHH-----HHHC----SSSCEEEEEECTTCC----CCHHHH----HHHTTTC
T ss_pred hcCCEEEEEEeCCCHHH--HHHHHHHHHHHH-----HhcC----CCCCEEEEEECCCCccccccCHHHH----HHHHHHc
Confidence 45899999999997532 122333332210 0000 11389999999999764 2222222 2223333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+ ..++.+|+..+.|...+++.+..
T Consensus 148 ~----~~~~~~Sa~~g~gv~~l~~~l~~ 171 (218)
T 4djt_A 148 N----YEYFEISAKTAHNFGLPFLHLAR 171 (218)
T ss_dssp C----CEEEEEBTTTTBTTTHHHHHHHH
T ss_pred C----CcEEEEecCCCCCHHHHHHHHHH
Confidence 3 35888999999999888877733
No 303
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.99 E-value=0.0052 Score=56.21 Aligned_cols=92 Identities=25% Similarity=0.336 Sum_probs=54.5
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+... + ..+..++... ...... .. +.+++++|+||+|+... ....+....|. +.
T Consensus 77 ~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~i-~~~~~~-~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~----~~ 144 (178)
T 2hxs_A 77 IYGAQGVLLVYDITNYQS-F-ENLEDWYTVV-KKVSEE-SE----TQPLVALVGNKIDLEHMRTIKPEKHLRFC----QE 144 (178)
T ss_dssp HTTCSEEEEEEETTCHHH-H-HTHHHHHHHH-HHHHHH-HT----CCCEEEEEEECGGGGGGCSSCHHHHHHHH----HH
T ss_pred HhhCCEEEEEEECCCHHH-H-HHHHHHHHHH-HHHhcc-cC----CCCeEEEEEEccccccccccCHHHHHHHH----HH
Confidence 456899999999987542 1 2233333221 000000 00 12348999999999753 23333444443 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|...+++.+..
T Consensus 145 ~~----~~~~~~Sa~~~~gi~~l~~~l~~ 169 (178)
T 2hxs_A 145 NG----FSSHFVSAKTGDSVFLCFQKVAA 169 (178)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHHH
T ss_pred cC----CcEEEEeCCCCCCHHHHHHHHHH
Confidence 34 25788999999999888887743
No 304
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.99 E-value=0.021 Score=52.88 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.2
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
+|+++|.+|||||||+|.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 688899999999999999964
No 305
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=95.99 E-value=0.004 Score=66.31 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=48.2
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|.+++|+|+.+...........++.. . +.+.+++|+||+|+.......+.+...++++++.
T Consensus 95 ~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~----------~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 95 GAAQMDGAILVVSAADGPMPQTREHILLARQ----------V----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp HHTTCSSEEEEEETTTCCCHHHHHHHHHHHH----------T----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCEEEEEEECCCCCcHHHHHHHHHHHH----------c----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 3457899999999998654332222222221 1 2223889999999985210011223334444555
Q ss_pred cCCC-ccceEEEEEeEeecC
Q 007511 273 DGIS-KITKLHFVSAVKNWG 291 (601)
Q Consensus 273 ~g~~-~~~~V~lvSa~kg~G 291 (601)
.+.. ....++.+|+..+.|
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHH
T ss_pred hcccccCCCEEEccHHHhhh
Confidence 4421 113578889988876
No 306
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.98 E-value=0.011 Score=53.46 Aligned_cols=90 Identities=27% Similarity=0.248 Sum_probs=55.8
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~ 270 (601)
.....+|.+++|+|+.+.. + ...+..++.... . ....+ .|+++|+||+|+... .........| +
T Consensus 74 ~~~~~~d~~i~v~d~~~~~-s-~~~~~~~~~~~~-~---~~~~~-----~piilv~nK~Dl~~~~~~~~~~~~~~----~ 138 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDED-S-FQKVKNWVKELR-K---MLGNE-----ICLCIVGNKIDLEKERHVSIQEAESY----A 138 (170)
T ss_dssp CSSTTCSEEEEEEETTCHH-H-HHHHHHHHHHHH-H---HHGGG-----SEEEEEEECGGGGGGCCSCHHHHHHH----H
T ss_pred HHhccCCEEEEEEECcCHH-H-HHHHHHHHHHHH-H---hcCCC-----CeEEEEEECcccccccccCHHHHHHH----H
Confidence 3456789999999998753 2 123333333210 0 01111 389999999999753 3333444444 3
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+..+ ..++.+|+..+.|..++++.+.
T Consensus 139 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~ 164 (170)
T 1z08_A 139 ESVG----AKHYHTSAKQNKGIEELFLDLC 164 (170)
T ss_dssp HHTT----CEEEEEBTTTTBSHHHHHHHHH
T ss_pred HHcC----CeEEEecCCCCCCHHHHHHHHH
Confidence 3344 3577899999999988887763
No 307
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.96 E-value=0.0048 Score=55.65 Aligned_cols=89 Identities=16% Similarity=0.114 Sum_probs=52.9
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+.. ++ ..+..++.... .+... ...|+++|+||+|+... .........| .+..
T Consensus 73 ~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~~ 138 (167)
T 1c1y_A 73 KNGQGFALVYSITAQS-TF-NDLQDLREQIL-----RVKDT---EDVPMILVGNKCDLEDERVVGKEQGQNL----ARQW 138 (167)
T ss_dssp HHCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHHCC---SCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHT
T ss_pred ccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhhCc---CCCcEEEEEECccccccccCCHHHHHHH----HHHc
Confidence 3589999999998753 11 12222222110 01100 12389999999999753 2233344444 3333
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+ ...++.+|+..+.|..++++.+.
T Consensus 139 ~---~~~~~~~Sa~~~~gi~~l~~~l~ 162 (167)
T 1c1y_A 139 C---NCAFLESSAKSKINVNEIFYDLV 162 (167)
T ss_dssp T---SCEEEECBTTTTBSHHHHHHHHH
T ss_pred c---CCcEEEecCCCCCCHHHHHHHHH
Confidence 2 13678899999999988887763
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.96 E-value=0.0062 Score=54.74 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=54.4
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++.... .+... ...|+++|+||+|+... .........|.. .
T Consensus 73 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 138 (168)
T 1u8z_A 73 FRSGEGFLCVFSITEME-SF-AATADFREQIL-----RVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRAD----Q 138 (168)
T ss_dssp HHHCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHHCC---TTSCEEEEEECGGGGGGCCSCHHHHHHHHH----H
T ss_pred hhcCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcCC---CCCcEEEEEECccccccCccCHHHHHHHHH----H
Confidence 34589999999998753 21 22333332211 01110 12389999999999753 333344444443 3
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|..++++.+.
T Consensus 139 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 162 (168)
T 1u8z_A 139 WN----VNYVETSAKTRANVDKVFFDLM 162 (168)
T ss_dssp HT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHH
Confidence 33 2578899999999988887763
No 309
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.95 E-value=0.012 Score=54.80 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=55.0
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+.+++.... .+. ....|+++|+||+|+... .........|. +
T Consensus 91 ~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~i~-----~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~ 155 (189)
T 2gf9_A 91 YYRGAMGFLLMYDIANQE-SF-AAVQDWATQIK-----TYS----WDNAQVILVGNKCDLEDERVVPAEDGRRLA----D 155 (189)
T ss_dssp GGTTCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred hccCCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----Hhc----CCCCCEEEEEECcccccccCCCHHHHHHHH----H
Confidence 445789999999998743 21 22333333210 011 012489999999999753 22333444443 3
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+ ..++.+|+..+.|...+++.+.
T Consensus 156 ~~~----~~~~~~Sa~~g~gi~~l~~~l~ 180 (189)
T 2gf9_A 156 DLG----FEFFEASAKENINVKQVFERLV 180 (189)
T ss_dssp HHT----CEEEECBTTTTBSHHHHHHHHH
T ss_pred HcC----CeEEEEECCCCCCHHHHHHHHH
Confidence 334 2578899999999988887763
No 310
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.95 E-value=0.0045 Score=58.47 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68889999999999999999743
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.95 E-value=0.003 Score=60.09 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=21.6
Q ss_pred ccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccc
Q 007511 293 KSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 293 ~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
...++++ ++...++. ++++|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~-~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENL-YFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCce-eEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456777 77777774 6669999999999999999765
No 312
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.94 E-value=0.002 Score=67.15 Aligned_cols=46 Identities=22% Similarity=0.081 Sum_probs=32.7
Q ss_pred ecCCccccchhhhhcccCCc-EEEECCCCCchhHHHHHHhccccCCCC
Q 007511 289 NWGLKSLIDDVVDLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 289 g~G~~~LL~~I~~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
.++...+++.+ ++...++. +.++|++|+|||||+|.|++...+..+
T Consensus 39 ~~~~~~~~~~l-~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~ 85 (341)
T 2p67_A 39 QALSTQLLDAI-MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL 85 (341)
T ss_dssp HHHHHHHHHHH-GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhC-CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 34445566666 44445554 556999999999999999988765444
No 313
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.012 Score=54.86 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=55.5
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRA 270 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~ 270 (601)
.....+|.+++|+|+.+.. ++ ..+..++.... ... ....|+++|+||+|+... .........| .
T Consensus 91 ~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~ 155 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEE-SF-NAVQDWATQIK-----TYS----WDNAQVILVGNKCDMEEERVVPTEKGQLL----A 155 (191)
T ss_dssp HHHTTCCEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHS----CTTCEEEEEEECTTCGGGCCSCHHHHHHH----H
T ss_pred HHHccCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----Hhc----CCCCCEEEEEECCCCccccccCHHHHHHH----H
Confidence 4456799999999998742 21 22333332210 011 012489999999999754 2233333433 3
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+..+ ..++.+|+..+.|..++++.+..
T Consensus 156 ~~~~----~~~~~~Sa~~~~gi~~l~~~l~~ 182 (191)
T 3dz8_A 156 EQLG----FDFFEASAKENISVRQAFERLVD 182 (191)
T ss_dssp HHHT----CEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHcC----CeEEEEECCCCCCHHHHHHHHHH
Confidence 3334 25788999999999888877643
No 314
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.94 E-value=0.004 Score=58.90 Aligned_cols=90 Identities=18% Similarity=0.179 Sum_probs=52.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHH-HHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-------------CC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i-~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-------------~~ 258 (601)
....+|.+++|+|+.+.. ++. .+ ..++... .. ... + .|+++|+||+|+.... ..
T Consensus 93 ~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~~----~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 160 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPD-SLE-NIPEKWTPEV-KH----FCP----N-VPIILVGNKKDLRQDEHTRRELAKMKQEPVR 160 (201)
T ss_dssp GCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-HH----HST----T-CCEEEEEECGGGTTCHHHHHHHHTTTCCCCC
T ss_pred hcCCCCEEEEEEECCCHH-HHH-HHHHHHHHHH-HH----hCC----C-CCEEEEEecHHhhcCccchhhhcccccCcCC
Confidence 456789999999998742 221 12 2222211 00 101 2 3899999999998641 11
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..... .+++..+ ...++.+|+..+.|..++++.+..
T Consensus 161 ~~~~~----~~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 161 SEEGR----DMANRIS---AFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp HHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHH----HHHHhCC---CcEEEEeeCCCCCCHHHHHHHHHH
Confidence 11222 2233333 235788999999999888877643
No 315
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0048 Score=57.82 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=55.5
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. + ...+..++.... .... ...|+++|+||+|+... ....+....| ++.
T Consensus 93 ~~~~d~iilV~d~~~~~-s-~~~~~~~~~~i~-----~~~~----~~~piiiv~NK~Dl~~~~~v~~~~~~~~----~~~ 157 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQD-S-FYTLKKWVKELK-----EHGP----ENIVMAIAGNKCDLSDIREVPLKDAKEY----AES 157 (192)
T ss_dssp HTTCSEEEEEEETTCTH-H-HHHHHHHHHHHH-----HHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHH----HHT
T ss_pred hccCCEEEEEEeCCCHH-H-HHHHHHHHHHHH-----HhCC----CCCcEEEEEECcccccccccCHHHHHHH----HHH
Confidence 45689999999998853 2 223334433210 0100 12489999999999753 3333344444 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|..++++.+..
T Consensus 158 ~~----~~~~~~Sa~~~~gi~~l~~~l~~ 182 (192)
T 2fg5_A 158 IG----AIVVETSAKNAINIEELFQGISR 182 (192)
T ss_dssp TT----CEEEECBTTTTBSHHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCcCHHHHHHHHHH
Confidence 34 35788999999999888888744
No 316
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.93 E-value=0.0075 Score=54.43 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=52.3
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... ... ....|+++|+||+|+.+.. ........ +...
T Consensus 70 ~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~----~~~~ 135 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKG-SF-EKASELRVQLRR-----ARQ---TDDVPIILVGNKSDLVRSREVSVDEGRA----CAVV 135 (166)
T ss_dssp ---CCEEEEEEETTCHH-HH-HHHHHHHHHHHH-----CC------CCCEEEEEECTTCCSSCCSCHHHHHH----HHHH
T ss_pred hhhCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hcC---CCCCCEEEEEeccccccccccCHHHHHH----HHHH
Confidence 45689999999999753 22 233333322100 000 0124899999999998643 23233333 3333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|..++++.+.
T Consensus 136 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 136 FD----CKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp TT----CEEEECBGGGTBSHHHHHHHHH
T ss_pred hC----CcEEEeccCCCCCHHHHHHHHH
Confidence 34 3578899999999988887763
No 317
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.93 E-value=0.013 Score=54.63 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=54.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... ... ...|+++|+||+|+... .........|. +.
T Consensus 91 ~~~~d~ii~v~d~~~~~-s~-~~~~~~l~~i~~-----~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~~ 155 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRE-TF-NHLTSWLEDARQ-----HSS----SNMVIMLIGNKSDLESRRDVKREEGEAFA----RE 155 (191)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HTHHHHHHHHHH-----HSC----TTCEEEEEEECTTCGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hcC----CCCCEEEEEECcccCCccccCHHHHHHHH----HH
Confidence 34689999999998743 21 223333332100 000 12489999999999753 33334444443 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|..++++.+.
T Consensus 156 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 179 (191)
T 2a5j_A 156 HG----LIFMETSAKTACNVEEAFINTA 179 (191)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 34 2578899999999988887763
No 318
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.92 E-value=0.0042 Score=71.26 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=56.5
Q ss_pred cCCcEEEEEEeCCCCCCCccH-HHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~-~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
..+|+|++|+|+.......+. .+.+.+... + .|+++|+||+|++++.... ...... +..
T Consensus 186 ~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~----------g-----~pvIlVlNKiDlv~~~~~~---~~il~~--~~~ 245 (772)
T 3zvr_A 186 KENCLILAVSPANSDLANSDALKIAKEVDPQ----------G-----QRTIGVITKLDLMDEGTDA---RDVLEN--KLL 245 (772)
T ss_dssp STTEEEEEEEETTSCSSSCHHHHHHHHHCTT----------C-----SSEEEEEECTTSSCTTCCS---HHHHTT--CSS
T ss_pred cCCcEEEEEEcCCCCcchhHHHHHHHHHHhc----------C-----CCEEEEEeCcccCCcchhh---HHHHHH--Hhh
Confidence 578999999999986665554 455544321 1 3899999999999754221 111110 000
Q ss_pred CC-CccceEEEEEeEeecCCccccchhhh
Q 007511 274 GI-SKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 274 g~-~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.. .++..|+.+|+.++.|...|++.+..
T Consensus 246 ~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 246 PLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred hhhccCCceEEecccccccchhHHHHHHH
Confidence 00 12456788999999999999888854
No 319
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.92 E-value=0.0031 Score=58.51 Aligned_cols=97 Identities=19% Similarity=0.097 Sum_probs=54.9
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
......+|.+++|+|+.+.. ++ ..+.+++...... .. . ...|+++|+||+|+.... ....+.+++..
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~~----~~-~---~~~piilv~nK~Dl~~~~-~~~~~~~~~~~-- 146 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQ-RM-QDCQRELQSLLVE----ER-L---AGATLLIFANKQDLPGAL-SCNAIQEALEL-- 146 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGG-GH-HHHHHHHHHHHTC----GG-G---TTCEEEEEEECTTSTTCC-CHHHHHHHTTG--
T ss_pred HHHhcCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhC----hh-c---CCCcEEEEEeCccCCCCC-CHHHHHHHhCh--
Confidence 34566799999999998854 22 2333333221100 00 0 123899999999997642 22233222110
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.... ..-..++.+|+..+.|.+++++.+.+
T Consensus 147 ~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 176 (186)
T 1ksh_A 147 DSIR-SHHWRIQGCSAVTGEDLLPGIDWLLD 176 (186)
T ss_dssp GGCC-SSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhcc-CCceEEEEeeCCCCCCHHHHHHHHHH
Confidence 0000 01125778899999999888887744
No 320
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.91 E-value=0.0026 Score=58.61 Aligned_cols=91 Identities=25% Similarity=0.278 Sum_probs=53.6
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-------------CC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-------------~~ 258 (601)
....+|.+++|+|+.+.. ++. .+. .++... . ... .+ .|+++|+||+|+.+.. ..
T Consensus 73 ~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~----~~~----~~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 140 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPA-SFE-NVRAKWYPEV-R----HHC----PN-TPIILVGTKLDLRDDKDTIEKLKEKKLTPIT 140 (186)
T ss_dssp GCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-H----HHS----TT-SCEEEEEECHHHHTCHHHHHHHHHTTCCCCC
T ss_pred hccCCcEEEEEEECCChh-hHH-HHHHHHHHHH-H----HhC----CC-CCEEEEeEcccccccchhhhhhcccccccCC
Confidence 456789999999998742 221 222 222211 0 000 12 3899999999997631 11
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
..... .+.+..+ ...++.+|+..+.|..++++.+...
T Consensus 141 ~~~~~----~~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 141 YPQGL----AMAKEIG---AVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp HHHHH----HHHHHTT---CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHH----HHHHhcC---CcEEEEecCCCccCHHHHHHHHHHH
Confidence 11222 2333333 2367889999999998888877443
No 321
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0077 Score=56.23 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=55.0
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+... + ..+..++... .+ .... ..+ .|+++|+||+|+.+..........|. +..
T Consensus 77 ~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~i-~~----~~~~-~~~-~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 143 (199)
T 2gf0_A 77 ISKGHAFILVFSVTSKQS-L-EELGPIYKLI-VQ----IKGS-VED-IPVMLVGNKCDETQREVDTREAQAVA----QEW 143 (199)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTTHHHHHHH-HH----HHSC-GGG-SCEEEEEECTTCSSCSSCHHHHHHHH----HHH
T ss_pred hccCCEEEEEEECcCHHH-H-HHHHHHHHHH-HH----HhcC-CCC-CCEEEEEECccCCccccCHHHHHHHH----HHh
Confidence 345899999999987431 1 1122221110 00 0000 001 37999999999987544444444443 333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhhc
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDLA 303 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~ 303 (601)
+ ..++.+|+..+.|..++++.+....
T Consensus 144 ~----~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 144 K----CAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred C----CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 3 2578899999999998888875543
No 322
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.89 E-value=0.0054 Score=55.35 Aligned_cols=90 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+..++..... .. . ...|+++|+||+|+... .........| ++
T Consensus 75 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~~-~---~~~~iilv~nK~Dl~~~~~~~~~~~~~~----~~ 139 (170)
T 1r2q_A 75 YYRGAQAAIVVYDITNEE-SF-ARAKNWVKELQR-----QA-S---PNIVIALSGNKADLANKRAVDFQEAQSY----AD 139 (170)
T ss_dssp HHTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH-----HS-C---TTCEEEEEEECGGGGGGCCSCHHHHHHH----HH
T ss_pred hccCCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hc-C---CCCcEEEEEECccCccccccCHHHHHHH----HH
Confidence 345689999999998753 21 233333332110 00 1 12379999999999753 2233334443 33
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+ ..++.+|+..+.|..++++.+..
T Consensus 140 ~~~----~~~~~~Sa~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 140 DNS----LLFMETSAKTSMNVNEIFMAIAK 165 (170)
T ss_dssp HTT----CEEEECCTTTCTTHHHHHHHHHH
T ss_pred HcC----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 333 35778999999999888887743
No 323
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.0033 Score=59.90 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.+++.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 324
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.87 E-value=0.0079 Score=56.49 Aligned_cols=93 Identities=15% Similarity=0.107 Sum_probs=51.7
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
...+|.+++|+|+.+.. ++ ..+.+++...... ... ...|+++|+||+|+.... ....+... .....
T Consensus 94 ~~~~d~iilv~D~~~~~-s~-~~~~~~l~~~~~~-----~~~---~~~piilv~NK~Dl~~~~-~~~~i~~~---~~~~~ 159 (192)
T 2b6h_A 94 FQNTQGLIFVVDSNDRE-RV-QESADELQKMLQE-----DEL---RDAVLLVFANKQDMPNAM-PVSELTDK---LGLQH 159 (192)
T ss_dssp HHTCCEEEEEEETTCGG-GH-HHHHHHHHHHHTC-----GGG---TTCEEEEEEECTTSTTCC-CHHHHHHH---TTGGG
T ss_pred hccCCEEEEEEECCCHH-HH-HHHHHHHHHHhcc-----ccc---CCCeEEEEEECCCCCCCC-CHHHHHHH---hCccc
Confidence 34689999999998863 22 2333333321100 000 124899999999996532 22222221 11110
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.......++.+|+..+.|..++++.+.
T Consensus 160 ~~~~~~~~~~~SA~~g~gi~~l~~~l~ 186 (192)
T 2b6h_A 160 LRSRTWYVQATCATQGTGLYDGLDWLS 186 (192)
T ss_dssp CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred ccCCceEEEECcCCCcCCHHHHHHHHH
Confidence 000112477889999999888887763
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.85 E-value=0.0048 Score=63.74 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred EEEECCCCCchhHHHHHHhcccc
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
++++|+||||||||+++|.+++.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 56699999999999999999875
No 326
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.85 E-value=0.0092 Score=54.69 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCC---CCCChhHHHHHHHHHHHH
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp---~~~~~~~l~~w~~~~~~~ 272 (601)
.+|.+++|+|+.+.. ++ ..+..++... . ...... ....|+++|+||+|+.. ..........|...
T Consensus 72 ~~d~~ilv~D~~~~~-s~-~~~~~~~~~i-~----~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~---- 139 (178)
T 2iwr_A 72 WADAVIFVFSLEDEN-SF-QAVSRLHGQL-S----SLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXAD---- 139 (178)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHH-H----HHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHH----
T ss_pred hCCEEEEEEECcCHH-HH-HHHHHHHHHH-H----HHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHh----
Confidence 489999999998754 22 2233322110 0 011100 01248999999999952 23334445555432
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ...++.+|++.+.|.+++++.+.
T Consensus 140 ~~---~~~~~~~Sa~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 140 MK---RCSYYETXATYGLNVDRVFQEVA 164 (178)
T ss_dssp HS---SEEEEEEBTTTTBTHHHHHHHHH
T ss_pred hc---CCeEEEEeccccCCHHHHHHHHH
Confidence 22 13577899999999988887763
No 327
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.85 E-value=0.0069 Score=57.28 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=54.1
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH--
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA-- 270 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~-- 270 (601)
....+|.+++|+|+.+.. ++ ..+..++...... ... ...|+++|+||+|+.. ....+.+.+++....
T Consensus 89 ~~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~~~~~---~~~-----~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~ 157 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHE-RL-LESKEELDSLMTD---ETI-----ANVPILILGNKIDRPE-AISEERLREMFGLYGQT 157 (198)
T ss_dssp GGGGCSEEEEEEETTCGG-GH-HHHHHHHHHHHTC---GGG-----TTSCEEEEEECTTSTT-CCCHHHHHHHHTCTTTC
T ss_pred HHhcCCEEEEEEECCCHH-HH-HHHHHHHHHHHhC---ccc-----CCCcEEEEEECCCccc-cCCHHHHHHHhCccccc
Confidence 345689999999998853 22 2233333221100 000 1238999999999975 334455555543210
Q ss_pred --------HHcCCCccceEEEEEeEeecCCccccchh
Q 007511 271 --------REDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 271 --------~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
...+ .....++.+||+.+.|.+++++.+
T Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l 193 (198)
T 1f6b_A 158 TGKGSVSLKELN-ARPLEVFMCSVLKRQGYGEGFRWM 193 (198)
T ss_dssp CCSSCCCTTTCC-SCCEEEEECBTTTTBSHHHHHHHH
T ss_pred cccccccccccc-CceEEEEEEECCCCCCHHHHHHHH
Confidence 0000 012357778999999888887776
No 328
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.83 E-value=0.0036 Score=58.74 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=53.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+.+++... ..... ...|+++|+||+|+... .........| .+.
T Consensus 96 ~~~~d~iilV~D~~~~~-s~-~~~~~~~~~i-----~~~~~----~~~piilV~NK~Dl~~~~~v~~~~~~~~----~~~ 160 (192)
T 2il1_A 96 YRSAKGIILVYDITKKE-TF-DDLPKWMKMI-----DKYAS----EDAELLLVGNKLDCETDREITRQQGEKF----AQQ 160 (192)
T ss_dssp HHHCSEEEEEEETTCHH-HH-HTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHH----HHT
T ss_pred hcCCCEEEEEEECcCHH-HH-HHHHHHHHHH-----HHhcC----CCCcEEEEEECcccccccccCHHHHHHH----HHh
Confidence 34689999999998853 21 2233332211 00110 12489999999999753 2333333333 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ...++.+|+..+.|..++++.+.
T Consensus 161 ~~---~~~~~~~SA~~g~gi~~l~~~l~ 185 (192)
T 2il1_A 161 IT---GMRFCEASAKDNFNVDEIFLKLV 185 (192)
T ss_dssp ST---TCEEEECBTTTTBSHHHHHHHHH
T ss_pred cC---CCeEEEEeCCCCCCHHHHHHHHH
Confidence 21 13577899999999988887763
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.83 E-value=0.0063 Score=55.94 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=54.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+... + ..+..++.... .+... ...|+++|+||+|+... .........|. +.
T Consensus 87 ~~~~d~~i~v~d~~~~~s-~-~~~~~~~~~i~-----~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 152 (187)
T 2a9k_A 87 FRSGEGFLCVFSITEMES-F-AATADFREQIL-----RVKED---ENVPFLLVGNKSDLEDKRQVSVEEAKNRA----EQ 152 (187)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HHHHHHHHHHH-----HHHCC---TTCCEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hccCCEEEEEEECcCHHH-H-HHHHHHHHHHH-----HhcCC---CCCCEEEEEECccccccCccCHHHHHHHH----HH
Confidence 345899999999987531 1 22333332211 11110 12389999999999753 23333444443 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|..++++.+.
T Consensus 153 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 176 (187)
T 2a9k_A 153 WN----VNYVETSAKTRANVDKVFFDLM 176 (187)
T ss_dssp TT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred cC----CeEEEeCCCCCCCHHHHHHHHH
Confidence 44 2578899999999988887763
No 330
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.82 E-value=0.0027 Score=60.83 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=52.1
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-------------CC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-------------~~ 258 (601)
....+|.+++|+|+.+.. ++. .+. .++... ..... + .|+++|+||+|+.... ..
T Consensus 102 ~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-----~~~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 169 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPN-SFD-NIFNRWYPEV-----NHFCK----K-VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVT 169 (214)
T ss_dssp ---CEEEEEEEEETTCHH-HHH-HHHHTHHHHH-----HHHCS----S-CCEEEEEECGGGGSCHHHHHHHHHTTCCCCC
T ss_pred HhccCCEEEEEEECcCHH-HHH-HHHHHHHHHH-----HHhCC----C-CCEEEEEEChhhhccchhhhhhcccccCccc
Confidence 345789999999998743 222 222 222211 00111 2 3899999999998641 11
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
...... +.+..+ ...++.+|+..+.|..++++.+..
T Consensus 170 ~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 170 YHRGQE----MARSVG---AVAYLECSARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHH----HHHHTT---CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHH----HHHhcC---CCEEEEecCCCCCCHHHHHHHHHH
Confidence 122222 333333 236788999999999888887743
No 331
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.81 E-value=0.013 Score=53.32 Aligned_cols=89 Identities=24% Similarity=0.266 Sum_probs=53.9
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... .. + ...|+++|+||+|+... .........+. +.
T Consensus 84 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~~-----~~-~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~ 148 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTN-SF-HQTSKWIDDVRT-----ER-G---SDVIIMLVGNKTDLSDKRQVSTEEGERKA----KE 148 (179)
T ss_dssp HHTCSEEEEEEETTCHH-HH-HTHHHHHHHHHH-----HH-T---TSSEEEEEEECGGGGGGCCSCHHHHHHHH----HH
T ss_pred hcCCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-----hc-C---CCCcEEEEEECCcccccCcCCHHHHHHHH----HH
Confidence 34689999999998743 21 223333322110 00 0 12389999999999753 22333333333 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|.+.+++.+..
T Consensus 149 ~~----~~~~~~Sa~~~~~i~~l~~~l~~ 173 (179)
T 2y8e_A 149 LN----VMFIETSAKAGYNVKQLFRRVAA 173 (179)
T ss_dssp HT----CEEEEEBTTTTBSHHHHHHHHHH
T ss_pred cC----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 33 25788999999999888887743
No 332
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.81 E-value=0.0039 Score=56.44 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=54.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++.... .. +. ...|+++|+||+|+... .........| .+.
T Consensus 76 ~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~l~-----~~--~~--~~~~iilv~nK~Dl~~~~~v~~~~~~~~----~~~ 140 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEE-TF-STLKNWVRELR-----QH--GP--PSIVVAIAGNKCDLTDVREVMERDAKDY----ADS 140 (170)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HH--SC--TTSEEEEEEECTTCGGGCCSCHHHHHHH----HHH
T ss_pred CcCCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----Hh--CC--CCCcEEEEEECCccccccccCHHHHHHH----HHH
Confidence 45689999999998743 21 22333332210 01 11 12479999999999853 2233333333 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|...+++.+.+
T Consensus 141 ~~----~~~~~~Sa~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 141 IH----AIFVETSAKNAININELFIEISR 165 (170)
T ss_dssp TT----CEEEECBTTTTBSHHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCcCHHHHHHHHHH
Confidence 34 35788999999999888887743
No 333
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.01 Score=66.69 Aligned_cols=99 Identities=9% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHhhhccCCcEEEEEEeCCCC--CCCc--cHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHH
Q 007511 188 RKLMSASGARSVVLMVVDAADF--DGSF--PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRF 262 (601)
Q Consensus 188 ~~l~~~~~~~dvVv~VVDa~Df--~~s~--~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l 262 (601)
+.....+..+|++++|||+.+. ..++ .+...+.+... ... +.+++++|+||+|+.... .....+
T Consensus 260 ~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-------~~l----gi~~iIVVvNKiDl~~~~~~~~~ei 328 (611)
T 3izq_1 260 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-------SSL----GIHNLIIAMNKMDNVDWSQQRFEEI 328 (611)
T ss_dssp HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-------HTT----TCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-------HHc----CCCeEEEEEecccccchhHHHHHHH
Confidence 3344566789999999999873 2111 12222222211 011 223699999999998632 112234
Q ss_pred HHHHHHHHHHcCCC-ccceEEEEEeEeecCCccccc
Q 007511 263 EHWVRQRAREDGIS-KITKLHFVSAVKNWGLKSLID 297 (601)
Q Consensus 263 ~~w~~~~~~~~g~~-~~~~V~lvSa~kg~G~~~LL~ 297 (601)
...+..++...|.. ....++.+|+..+.|+..+..
T Consensus 329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~~ 364 (611)
T 3izq_1 329 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIEY 364 (611)
T ss_dssp HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCTT
T ss_pred HHHHHHHHHhhcccccCccEEeeecccCCCccccCc
Confidence 45555555555531 123688899999999887643
No 334
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.80 E-value=0.0029 Score=59.63 Aligned_cols=94 Identities=14% Similarity=0.051 Sum_probs=50.1
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCC---hhHHHHH-HHHHH
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS---PTRFEHW-VRQRA 270 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~---~~~l~~w-~~~~~ 270 (601)
..+|.+++|+|+.+........+.+++.... +.. ...|+++|+||+||++.+.. ...+... ...+.
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~-------~~~---~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~ 163 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAY-------KVN---PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLA 163 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHH-------HHC---TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHH-------hcC---CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHH
Confidence 3589999999999851111223333333210 001 12489999999999863210 0112111 12222
Q ss_pred HHcCCCccceEEEEEeEeecCCccccchh
Q 007511 271 REDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 271 ~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
+......-..++.+|++. .|+.++++.+
T Consensus 164 ~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 164 DAGLEKLHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp HTTCTTSCEEEEEECTTS-THHHHHHHHH
T ss_pred HhhhhcCCcceEEEEech-hhHHHHHHHH
Confidence 211000112567789988 8888887766
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.79 E-value=0.014 Score=53.71 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=54.5
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++ ..+.+++..... ... ....|+++|+||+|+.... ....+.+++.
T Consensus 81 ~~~~~~d~ii~v~d~~~~~-s~-~~~~~~~~~~~~-------~~~-~~~~piilv~nK~Dl~~~~-~~~~i~~~~~---- 145 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKD-RM-STASKELHLMLQ-------EEE-LQDAALLVFANKQDQPGAL-SASEVSKELN---- 145 (183)
T ss_dssp GTTTTEEEEEEEEETTCTT-TH-HHHHHHHHHHTT-------SST-TSSCEEEEEEECTTSTTCC-CHHHHHHHTT----
T ss_pred HHhccCCEEEEEEECCCHH-HH-HHHHHHHHHHHc-------Chh-hCCCeEEEEEECCCCCCCC-CHHHHHHHhC----
Confidence 3455789999999999863 32 233333332110 000 0124899999999997542 2333333321
Q ss_pred HcCC-CccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGI-SKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~-~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.... .....++.+|+..+.|..++++.+.
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 175 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKGEGITEGLDWLI 175 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHH
Confidence 1111 0112578899999999988887763
No 336
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.77 E-value=0.012 Score=55.15 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=54.9
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++.... .+.. ....|+++|+||+|+... ......+..|.. .
T Consensus 83 ~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~ 148 (206)
T 2bov_A 83 FRSGEGFLCVFSITEME-SF-AATADFREQIL-----RVKE---DENVPFLLVGNKSDLEDKRQVSVEEAKNRAE----Q 148 (206)
T ss_dssp HHHCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHTT---CSCCCEEEEEECTTCGGGCCSCHHHHHHHHH----H
T ss_pred HhhCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcC---CCCCCEEEEEeccCccccccccHHHHHHHHH----H
Confidence 34589999999998753 22 22333332210 0111 012489999999999753 334445555543 3
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|...+++.+.
T Consensus 149 ~~----~~~~~~Sa~~g~gi~~l~~~l~ 172 (206)
T 2bov_A 149 WN----VNYVETSAKTRANVDKVFFDLM 172 (206)
T ss_dssp HT----CEEEEECTTTCTTHHHHHHHHH
T ss_pred hC----CeEEEEeCCCCCCHHHHHHHHH
Confidence 33 2578899999999988887773
No 337
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.77 E-value=0.0039 Score=56.93 Aligned_cols=25 Identities=44% Similarity=0.511 Sum_probs=20.6
Q ss_pred ccCCcEEEECCCCCchhHHHHHHhc
Q 007511 304 GKRGNVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 304 ~~~G~v~ivG~nGaGKSTLLn~L~g 328 (601)
+.+|-.+++|+||+||||||.+|.-
T Consensus 21 f~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455667799999999999999874
No 338
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.74 E-value=0.0062 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6888999999999999999864
No 339
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.74 E-value=0.024 Score=53.34 Aligned_cols=90 Identities=16% Similarity=0.152 Sum_probs=55.3
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+..++.... .... ...|+++|+||+|+... .........| .+
T Consensus 77 ~~~~~d~vilv~d~~~~~-s~-~~~~~~~~~i~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~ 141 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQE-SF-NGVKMWLQEID-----RYAT----STVLKLLVGNKCDLKDKRVVEYDVAKEF----AD 141 (206)
T ss_dssp GGTTCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HHSC----TTCEEEEEEECTTCTTTCCSCHHHHHHH----HH
T ss_pred hccCCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhcC----CCCCEEEEEECCCCccccccCHHHHHHH----HH
Confidence 345689999999998753 21 22333332210 0110 12489999999999864 2333334443 33
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+ ..++.+|+..+.|...+++.+..
T Consensus 142 ~~~----~~~~~~Sa~~g~gi~~l~~~l~~ 167 (206)
T 2bcg_Y 142 ANK----MPFLETSALDSTNVEDAFLTMAR 167 (206)
T ss_dssp HTT----CCEEECCTTTCTTHHHHHHHHHH
T ss_pred HcC----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 344 25788999999999888877743
No 340
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.73 E-value=0.0033 Score=66.04 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=48.5
Q ss_pred CCccC-CCCHHHHHHhcccccc-----------CCCEEEe-------ccchHHHHHHHHHHHHHhcCceEEEEEE---ee
Q 007511 382 NQITT-RLTREEQKLVNINKEL-----------KPRTYRI-------KAGHSIHIAGLMRMDVEESSVESIYVTV---WA 439 (601)
Q Consensus 382 ~~~~~-~LSgGe~qrv~iaraL-----------~P~lllL-------D~~~~~~l~~lir~~~~~~g~tii~~~~---~a 439 (601)
++.+. .||+||+|++++|++| +|++++| |+..+..+..++.... .+++.++. .+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~~~~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTELAPGA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSCCTTC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEeccccC
Confidence 34456 7999999999999887 4889998 7777888887776542 34443332 57
Q ss_pred cCEEEeecceec
Q 007511 440 SPYLPLHMGKTE 451 (601)
Q Consensus 440 d~vl~l~~Gki~ 451 (601)
++++.+++|++.
T Consensus 335 ~~i~~l~~G~i~ 346 (359)
T 2o5v_A 335 ALTLRAQAGRFT 346 (359)
T ss_dssp SEEEEEETTEEE
T ss_pred CEEEEEECCEEE
Confidence 888888888874
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.73 E-value=0.0073 Score=57.44 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|..|||||||++.+++..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68889999999999999999643
No 342
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.71 E-value=0.0055 Score=65.67 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=32.6
Q ss_pred cceEEEEEeEeecCCccccchhhhhcccCC-cEEEECCCCCchhHHHHHHhccccCCC
Q 007511 278 ITKLHFVSAVKNWGLKSLIDDVVDLAGKRG-NVWAIGAQNAGKSTLLNAIAKSVDAGR 334 (601)
Q Consensus 278 ~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G-~v~ivG~nGaGKSTLLn~L~g~~~~~~ 334 (601)
+..+.+.+. +.|+... .+ .+..+ .++++|+||+|||||+++|.++..+.+
T Consensus 4 i~~l~~~~~-~~~~~~~---~~---~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 4 LVGLELSNF-KSYRGVT---KV---GFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEEEEESC-SSCCSEE---EE---ECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred eEEEEEeCE-EEECCce---eE---EecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 345666666 4565322 12 23434 456699999999999999999886654
No 343
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=95.71 E-value=0.0078 Score=65.57 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=54.1
Q ss_pred hhhccCCcEEEEEEeCCCCCCCcc-HHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFP-RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~-~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
...+..+|+|++|+|+.+...... .....++... + + .|+++|+||+|+.+.. .... ..+
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--------~-----~-~piIvV~NK~Dl~~~~----~~~~--~~l 366 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--------P-----A-AKFLTVANKLDRAANA----DALI--RAI 366 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--------T-----T-SEEEEEEECTTSCTTT----HHHH--HHH
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--------C-----C-CCEEEEEECcCCCCcc----chhH--HHH
Confidence 445678999999999998754311 1222333211 1 1 3899999999998652 1111 111
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+.+ +..++.+|++.+.|..++++.+..
T Consensus 367 -~~~~---~~~~i~vSAktg~GI~eL~~~i~~ 394 (476)
T 3gee_A 367 -ADGT---GTEVIGISALNGDGIDTLKQHMGD 394 (476)
T ss_dssp -HHHH---TSCEEECBTTTTBSHHHHHHHHTH
T ss_pred -HhcC---CCceEEEEECCCCCHHHHHHHHHH
Confidence 1111 245788999999999888888744
No 344
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=95.70 E-value=0.0024 Score=66.59 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|++||.+|||||||||+|++.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcC
Confidence 6889999999999999999864
No 345
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.69 E-value=0.0041 Score=63.69 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.+++.
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 346
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.68 E-value=0.0068 Score=57.21 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=54.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+..++..... ... ....|+++|+||+|+.+. .........|. +
T Consensus 92 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i~~-----~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 157 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLH-SF-QVIESLYQKLHE-----GHG---KTRVPVVLVGNKADLSPEREVQAVEGKKLA----E 157 (201)
T ss_dssp GTTTCCEEEEEEETTCHH-HH-HHHHHHHHHHHC-------------CCCEEEEEECTTCGGGCCSCHHHHHHHH----H
T ss_pred HHhcCCEEEEEEeCCCHH-HH-HHHHHHHHHHHH-----hcC---CCCCCEEEEEECccCccccccCHHHHHHHH----H
Confidence 345689999999998743 11 223333322100 000 012389999999999854 23333344443 3
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+ ..++.+|+..+.|..++++.+..
T Consensus 158 ~~~----~~~~~~Sa~~~~~v~~l~~~l~~ 183 (201)
T 3oes_A 158 SWG----ATFMESSARENQLTQGIFTKVIQ 183 (201)
T ss_dssp HHT----CEEEECCTTCHHHHHHHHHHHHH
T ss_pred HhC----CeEEEEeCCCCCCHHHHHHHHHH
Confidence 334 25788999999999888877744
No 347
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.68 E-value=0.0077 Score=54.56 Aligned_cols=87 Identities=25% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHcC
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~g 274 (601)
.+|.+++|+|+.+.. ++ ..+..++..... ... ....|+++|+||+|+... .........| .+..+
T Consensus 75 ~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~~~---~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~----~~~~~ 140 (169)
T 3q85_A 75 TGDAFLIVFSVTDRR-SF-SKVPETLLRLRA-----GRP---HHDLPVILVGNKSDLARSREVSLEEGRHL----AGTLS 140 (169)
T ss_dssp HCSEEEEEEETTCHH-HH-HTHHHHHHHHHH-----HST---TSCCCEEEEEECTTCGGGCCSCHHHHHHH----HHHTT
T ss_pred cCCEEEEEEECCChH-HH-HHHHHHHHHHHh-----ccc---CCCCCEEEEeeCcchhhcccCCHHHHHHH----HHHcC
Confidence 479999999998842 21 223333322110 000 012489999999999743 3333344443 33444
Q ss_pred CCccceEEEEEeEeecCCccccchhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..++.+|+..+.|..++++.+.
T Consensus 141 ----~~~~~~Sa~~~~~v~~l~~~l~ 162 (169)
T 3q85_A 141 ----CKHIETSAALHHNTRELFEGAV 162 (169)
T ss_dssp ----CEEEECBTTTTBSHHHHHHHHH
T ss_pred ----CcEEEecCccCCCHHHHHHHHH
Confidence 2578899999999988887763
No 348
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.68 E-value=0.012 Score=53.49 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=53.8
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....++.+++|+|+.+.. ++ ..+..++.... .... ....|+++|+||+|+... .........|. .
T Consensus 74 ~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~l~-----~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~ 139 (175)
T 2nzj_A 74 CLQGGSAYVIVYSIADRG-SF-ESASELRIQLR-----RTHQ---ADHVPIILVGNKADLARCREVSVEEGRACA----V 139 (175)
T ss_dssp TTTSCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----HCC-------CCEEEEEECTTCTTTCCSCHHHHHHHH----H
T ss_pred hcccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----Hhhc---cCCCCEEEEEEChhhccccccCHHHHHHHH----H
Confidence 345689999999998753 22 22333322110 0000 012389999999999864 33333444443 2
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+ ..++.+|+..+.|..++++.+.
T Consensus 140 ~~~----~~~~~~Sa~~g~gi~~l~~~l~ 164 (175)
T 2nzj_A 140 VFD----CKFIETSATLQHNVAELFEGVV 164 (175)
T ss_dssp HHT----SEEEECBTTTTBSHHHHHHHHH
T ss_pred HcC----CeEEEEecCCCCCHHHHHHHHH
Confidence 333 2578899999999988887763
No 349
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.66 E-value=0.0087 Score=56.96 Aligned_cols=92 Identities=22% Similarity=0.221 Sum_probs=56.6
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~ 268 (601)
.......+|.+++|+|+.+.. ++ ..+..++... ..... ...|+++|+||+|+... .........|.
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~-s~-~~~~~~~~~i-----~~~~~----~~~piilv~NK~Dl~~~~~v~~~~~~~~~-- 158 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEE-SF-RCLPEWLREI-----EQYAS----NKVITVLVGNKIDLAERREVSQQRAEEFS-- 158 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHH-HH-HTHHHHHHHH-----HHHSC----TTCEEEEEEECGGGGGGCSSCHHHHHHHH--
T ss_pred HHHHHhcCCEEEEEEECCCHH-HH-HHHHHHHHHH-----HHhcC----CCCCEEEEEECCCCccccccCHHHHHHHH--
Confidence 345567799999999998753 21 2233333221 00110 12479999999999753 33334444443
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+..+ ..++.+|+..+.|+.++++.+.
T Consensus 159 --~~~~----~~~~~~Sa~~g~gv~~l~~~l~ 184 (201)
T 2ew1_A 159 --EAQD----MYYLETSAKESDNVEKLFLDLA 184 (201)
T ss_dssp --HHHT----CCEEECCTTTCTTHHHHHHHHH
T ss_pred --HHcC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 2333 2577899999999988887763
No 350
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.66 E-value=0.0024 Score=60.75 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=53.8
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC---------CChhHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS---------LSPTRF 262 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~---------~~~~~l 262 (601)
....+|.+++|+|+.+.. ++. .+. .++... . ... .+ .|+++|+||+|+.... ......
T Consensus 77 ~~~~~d~~ilv~d~~~~~-s~~-~~~~~~~~~~-~----~~~----~~-~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~ 144 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKA-SYE-NVLKKWMPEL-R----RFA----PN-VPIVLVGTKLDLRDDKGYLADHTNVITSTQG 144 (212)
T ss_dssp GGTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-H----HHC----TT-CCEEEEEECHHHHTCHHHHHTCSSCCCHHHH
T ss_pred hccCCCEEEEEEECCCHH-HHH-HHHHHHHHHH-H----HhC----CC-CCEEEEEeCHHhhhCccccccccCCCCHHHH
Confidence 455789999999998753 222 222 232211 0 010 12 3899999999997531 122223
Q ss_pred HHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 263 EHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 263 ~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.. +.+..+ ...++.+|+..+.|..++++.+..
T Consensus 145 ~~----~~~~~~---~~~~~~~Sa~~g~gi~~l~~~l~~ 176 (212)
T 2j0v_A 145 EE----LRKQIG---AAAYIECSSKTQQNVKAVFDTAIK 176 (212)
T ss_dssp HH----HHHHHT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HH----HHHHcC---CceEEEccCCCCCCHHHHHHHHHH
Confidence 33 333344 236788999999999888877743
No 351
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.65 E-value=0.017 Score=53.14 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQ 268 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~ 268 (601)
.......+|.+++|+|+.+.. ++ ..+..++.... .... ...|+++|+||+|+... .........|
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~--- 141 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRE-TY-NALTNWLTDAR-----MLAS----QNIVIILCGNKKDLDADREVTFLEASRF--- 141 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHSC----TTCEEEEEEECGGGGGGCCSCHHHHHHH---
T ss_pred HHHHHhcCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhcC----CCCcEEEEEECcccccccccCHHHHHHH---
Confidence 345567799999999998843 21 22333332110 0110 12489999999999753 3333344443
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
++..+ ..++.+|+..+.|...+++.+.
T Consensus 142 -~~~~~----~~~~~~Sa~~~~gi~~l~~~l~ 168 (186)
T 2bme_A 142 -AQENE----LMFLETSALTGENVEEAFVQCA 168 (186)
T ss_dssp -HHHTT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred -HHHcC----CEEEEecCCCCCCHHHHHHHHH
Confidence 33333 3577889999999888877763
No 352
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=95.64 E-value=0.011 Score=62.78 Aligned_cols=87 Identities=22% Similarity=0.140 Sum_probs=49.2
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
...+..+|.+++|+|+.+...........++.. . +.+.+++|+||+|+.......+.+..-+++++
T Consensus 84 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~----------~----~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l 149 (397)
T 1d2e_A 84 ITGTAPLDGCILVVAANDGPMPQTREHLLLARQ----------I----GVEHVVVYVNKADAVQDSEMVELVELEIRELL 149 (397)
T ss_dssp HHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH----------T----TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred HhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH----------c----CCCeEEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 345667999999999998654322222222221 1 22237899999999752100112223344455
Q ss_pred HHcCCC-ccceEEEEEeEeecC
Q 007511 271 REDGIS-KITKLHFVSAVKNWG 291 (601)
Q Consensus 271 ~~~g~~-~~~~V~lvSa~kg~G 291 (601)
+..+.. ....++.+|+..+.+
T Consensus 150 ~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 150 TEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHTTSCTTTSCEEECCHHHHHT
T ss_pred HHcCCCcccCcEEEeehhhccc
Confidence 555531 113678889988765
No 353
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.64 E-value=0.0067 Score=57.58 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.8
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||++.+++.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6888999999999999999853
No 354
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0051 Score=58.45 Aligned_cols=90 Identities=19% Similarity=0.204 Sum_probs=51.8
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHH-HHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-------------CC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-------------LS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i-~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-------------~~ 258 (601)
....+|.+++|+|+.+.. ++. .+ ..++... .. ... + .|+++|+||+|+.... ..
T Consensus 93 ~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~~----~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 160 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPD-SLE-NIPEKWVPEV-KH----FCP----N-VPIILVANKKDLRSDEHVRTELARMKQEPVR 160 (207)
T ss_dssp GCTTCCEEEEEEETTCHH-HHH-HHHHTHHHHH-HH----HST----T-CCEEEEEECGGGGGCHHHHHHHHHTTCCCCC
T ss_pred hcCCCCEEEEEEECCCHH-HHH-HHHHHHHHHH-HH----hCC----C-CCEEEEEEchhhhccccchhhhhhcccCCCC
Confidence 456789999999998742 211 12 2222211 00 101 2 3899999999997541 11
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
...... +.+..+ ...++.+|+..+.|..++++.+..
T Consensus 161 ~~~~~~----~~~~~~---~~~~~~~SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 161 TDDGRA----MAVRIQ---AYDYLECSAKTKEGVREVFETATR 196 (207)
T ss_dssp HHHHHH----HHHHTT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred HHHHHH----HHHhcC---CCEEEEeeCCCCCCHHHHHHHHHH
Confidence 111112 222333 236778899999998888887744
No 355
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.63 E-value=0.005 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++|||||||.+.|++..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 35669999999999999999765
No 356
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.62 E-value=0.0049 Score=65.14 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=28.8
Q ss_pred cccchhhhhcccCCcE-EEECCCCCchhHHHHHHhccc
Q 007511 294 SLIDDVVDLAGKRGNV-WAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 294 ~LL~~I~~l~~~~G~v-~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.+++.+ ++.+.+|.+ +++|++|+|||||+++|+|..
T Consensus 157 ~~l~~~-~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCM-VYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHH-HHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhc-ccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456666 667777764 559999999999999999865
No 357
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.62 E-value=0.0046 Score=60.38 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.4
Q ss_pred cCCc-EEEECCCCCchhHHHHHHhcc
Q 007511 305 KRGN-VWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 305 ~~G~-v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.+|. ++++|++|||||||+++|++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4564 566999999999999999987
No 358
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.61 E-value=0.0063 Score=57.07 Aligned_cols=96 Identities=16% Similarity=0.072 Sum_probs=52.6
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH-
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR- 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~- 271 (601)
....+|.+++|+|+.+.. ++ ..+..++..... .... ...|+++|+||+|+.. ....+.+.+++.....
T Consensus 87 ~~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~-----~~~~---~~~piilv~NK~Dl~~-~~~~~~~~~~~~~~~~~ 155 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPE-RF-DEARVELDALFN-----IAEL---KDVPFVILGNKIDAPN-AVSEAELRSALGLLNTT 155 (190)
T ss_dssp GCTTCCEEEEEEETTCGG-GH-HHHHHHHHHHHT-----CGGG---TTCCEEEEEECTTSTT-CCCHHHHHHHTTCSSCC
T ss_pred HHhcCCEEEEEEECCChH-HH-HHHHHHHHHHHc-----chhh---cCCCEEEEEECCCCcC-CCCHHHHHHHhCCcccc
Confidence 345789999999999864 22 223333322110 0000 1248999999999975 2333444433211000
Q ss_pred H---cCCCccceEEEEEeEeecCCccccchh
Q 007511 272 E---DGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 272 ~---~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
. ........++.+|+..+.|..++++.+
T Consensus 156 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 186 (190)
T 1m2o_B 156 GSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 186 (190)
T ss_dssp C---CCSSCCEEEEECBTTTTBSHHHHHHHH
T ss_pred ccccccccceEEEEEeECCcCCCHHHHHHHH
Confidence 0 000011246778998888888887766
No 359
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.60 E-value=0.0072 Score=56.28 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=51.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+... + ..+..++.... .+.. ....|+++|+||+|+... .........| .+
T Consensus 90 ~~~~~d~iilv~D~~~~~s-~-~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~ 155 (189)
T 1z06_A 90 YYRNVHAVVFVYDMTNMAS-F-HSLPAWIEECK-----QHLL---ANDIPRILVGNKCDLRSAIQVPTDLAQKF----AD 155 (189)
T ss_dssp HHTTCCEEEEEEETTCHHH-H-HTHHHHHHHHH-----HHCC---CSCCCEEEEEECTTCGGGCCSCHHHHHHH----HH
T ss_pred HhcCCCEEEEEEECcCHHH-H-HHHHHHHHHHH-----HhcC---CCCCCEEEEEECccccccceeCHHHHHHH----HH
Confidence 3457899999999987431 1 12333332210 0100 012489999999999754 2233333333 33
Q ss_pred HcCCCccceEEEEEeEee---cCCccccchh
Q 007511 272 EDGISKITKLHFVSAVKN---WGLKSLIDDV 299 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg---~G~~~LL~~I 299 (601)
..+ ..++.+|+..+ .|...+++.+
T Consensus 156 ~~~----~~~~~~Sa~~~~~~~~i~~l~~~l 182 (189)
T 1z06_A 156 THS----MPLFETSAKNPNDNDHVEAIFMTL 182 (189)
T ss_dssp HTT----CCEEECCSSSGGGGSCHHHHHHHH
T ss_pred HcC----CEEEEEeCCcCCcccCHHHHHHHH
Confidence 444 25788999998 7777776665
No 360
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.011 Score=55.22 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=52.9
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCC---CCCChhHHHHHHHHHHHH
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP---SSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp---~~~~~~~l~~w~~~~~~~ 272 (601)
.+|.+++|+|+.+.. ++ ..+..++.... .+.. ....|+++|+||+||.. ..........|. +.
T Consensus 85 ~~~~~i~v~d~~~~~-s~-~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~----~~ 150 (184)
T 3ihw_A 85 WVDAVVFVFSLEDEI-SF-QTVYNYFLRLC-----SFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLS----TD 150 (184)
T ss_dssp HCSEEEEEEETTCHH-HH-HHHHHHHHHHH-----TTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHH----HH
T ss_pred CCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhcC---CCCCCEEEEEECcccccccccccCHHHHHHHH----HH
Confidence 489999999999843 22 22333333210 0000 01238999999999953 223334444443 33
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ...++.+|++.+.|+.++++.+.
T Consensus 151 ~~---~~~~~e~Sa~~~~gv~~lf~~l~ 175 (184)
T 3ihw_A 151 LK---RCTYYETCATYGLNVERVFQDVA 175 (184)
T ss_dssp TT---TCEEEEEBTTTTBTHHHHHHHHH
T ss_pred cC---CCeEEEecCCCCCCHHHHHHHHH
Confidence 33 13577899999999988887763
No 361
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.59 E-value=0.0036 Score=57.86 Aligned_cols=83 Identities=18% Similarity=0.131 Sum_probs=50.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.+........+...+... . . ...|+++|+||+||...... |. +.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~--------~-~---~~~p~ilv~NK~Dl~~~~~~------~~----~~ 137 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR--------L-P---AKLPITVVRNKADITGETLG------MS----EV 137 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH--------S-C---TTCCEEEEEECHHHHCCCCE------EE----EE
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHh--------c-c---cCCCEEEEEECccCCcchhh------hh----hc
Confidence 45678999999999987643222222222211 0 0 12389999999999643210 10 01
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
. ...++.+||+.+.|..++++.+..
T Consensus 138 ~----~~~~~~~SA~~g~gv~~l~~~l~~ 162 (172)
T 2gj8_A 138 N----GHALIRLSARTGEGVDVLRNHLKQ 162 (172)
T ss_dssp T----TEEEEECCTTTCTTHHHHHHHHHH
T ss_pred c----CCceEEEeCCCCCCHHHHHHHHHH
Confidence 1 135778899999998888877743
No 362
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0077 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||++.+++.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6788999999999999999964
No 363
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.58 E-value=0.0054 Score=55.82 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.|++.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5788999999999999999964
No 364
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.57 E-value=0.012 Score=54.95 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=53.8
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++.... ... ....|+++|+||+||... .........| ++.
T Consensus 95 ~~~~d~vi~v~D~~~~~-s~-~~~~~~l~~i~-----~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 159 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQ-TY-AVVERWLKELY-----DHA----EATIVVMLVGNKSDLSQAREVPTEEARMF----AEN 159 (193)
T ss_dssp HTTCCEEEEEEETTCHH-HH-HTHHHHHHHHH-----TTS----CTTCEEEEEEECGGGGGGCCSCHHHHHHH----HHH
T ss_pred hccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----Hhc----CCCCeEEEEEECCCcccccccCHHHHHHH----HHH
Confidence 45689999999998743 11 22333332210 000 012489999999999753 2233333333 334
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|...+++.+.
T Consensus 160 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 183 (193)
T 2oil_A 160 NG----LLFLETSALDSTNVELAFETVL 183 (193)
T ss_dssp TT----CEEEEECTTTCTTHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 44 2578899999999988887763
No 365
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.57 E-value=0.0049 Score=55.39 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=53.0
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+... + ..+..++.... .+.. . ...|+++|+||+|+... .........+ .+.
T Consensus 72 ~~~~~~~i~v~d~~~~~s-~-~~~~~~~~~i~-----~~~~--~-~~~piilv~nK~Dl~~~~~~~~~~~~~~----~~~ 137 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQS-F-QDIKPMRDQII-----RVKR--Y-EKVPVILVGNKVDLESEREVSSSEGRAL----AEE 137 (167)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HHHHHHHHHHH-----HHTT--T-SCCCEEEEEECGGGGGGCCSCHHHHHHH----HHH
T ss_pred hccCCEEEEEEeCCCHHH-H-HHHHHHHHHHH-----HhcC--C-CCCCEEEEEECCcccccccCCHHHHHHH----HHH
Confidence 345799999999987531 1 22333322110 0000 0 12389999999999753 3333333333 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|..++++.+.
T Consensus 138 ~~----~~~~~~Sa~~~~gi~~l~~~l~ 161 (167)
T 1kao_A 138 WG----CPFMETSAKSKTMVDELFAEIV 161 (167)
T ss_dssp HT----SCEEEECTTCHHHHHHHHHHHH
T ss_pred hC----CCEEEecCCCCcCHHHHHHHHH
Confidence 34 2578899999999988887763
No 366
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.56 E-value=0.0066 Score=61.94 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.5
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAP 351 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~ 351 (601)
.++++|+|||||||+++.|++...+..| .++.++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~ 144 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDT 144 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCc
Confidence 4556999999999999999999876666 2456665544
No 367
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0051 Score=59.26 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57889999999999999998743
No 368
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0058 Score=55.26 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999973
No 369
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.52 E-value=0.0076 Score=55.07 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=52.7
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+.. ++ ..+..++..... .... ...|+++|+||+|+... .........| ....
T Consensus 79 ~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~~----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~ 144 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQ-SF-NEVGKLFTQILR----VKDR----DDFPVVLVGNKADLESQRQVPRSEASAF----GASH 144 (181)
T ss_dssp HHCSEEEEEEETTCHH-HH-HHHHHHHHHHHH----HHTS----SCCCEEEEEECGGGGGGCCSCHHHHHHH----HHHT
T ss_pred hhCCEEEEEEeCCCHH-HH-HHHHHHHHHHHH----hcCC----CCCCEEEEEECcccccccccCHHHHHHH----HHHc
Confidence 3489999999998743 11 223333322100 0010 12389999999999863 3333333333 3333
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+ ..++.+|+..+.|..++++.+.
T Consensus 145 ~----~~~~~~Sa~~~~gv~~l~~~l~ 167 (181)
T 2fn4_A 145 H----VAYFEASAKLRLNVDEAFEQLV 167 (181)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHH
T ss_pred C----CeEEEecCCCCCCHHHHHHHHH
Confidence 3 3678899999999988887774
No 370
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.52 E-value=0.014 Score=54.06 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=53.0
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+.+.. ++ ..+.+++...... ... ...|+++|+||+|+.... ....+.+.+. .
T Consensus 79 ~~~~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~~~----~~~----~~~piilv~NK~Dl~~~~-~~~~~~~~~~---~ 144 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRK-RF-EETGQELTELLEE----EKL----SCVPVLIFANKQDLLTAA-PASEIAEGLN---L 144 (181)
T ss_dssp HHHTTCSEEEEEEETTCGG-GH-HHHHHHHHHHTTC----GGG----TTCCEEEEEECTTSTTCC-CHHHHHHHTT---G
T ss_pred HHhCCCCEEEEEEECcCHH-HH-HHHHHHHHHHHhC----hhh----cCCCEEEEEECcCcccCC-CHHHHHHHhC---c
Confidence 3445799999999998853 22 2233333211000 000 123899999999997542 2222222211 0
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..-......++.+|+..+.|..++++.+..
T Consensus 145 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 145 HTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp GGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred hhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 000001125778899999999888887743
No 371
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=94.51 E-value=0.0023 Score=60.63 Aligned_cols=93 Identities=23% Similarity=0.207 Sum_probs=50.6
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHH---------H
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRF---------E 263 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l---------~ 263 (601)
....+|.+++|+|+.+... +......++... .. .. ...|+++|+||+|+.+.......+ .
T Consensus 98 ~~~~~d~iilv~D~~~~~s-~~~~~~~~~~~l-~~----~~-----~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~ 166 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPAS-FENVRAKWYPEV-RH----HC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITY 166 (204)
Confidence 3456899999999988542 221111222211 00 00 023799999999998642110000 0
Q ss_pred HHHHHHHHHcCCCccceEEEEEeEeecCCccccchh
Q 007511 264 HWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 264 ~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
.....+++..+ ...++.+|+..+.|.+++++.+
T Consensus 167 ~~~~~~~~~~~---~~~~~~vSA~~g~gi~~l~~~l 199 (204)
T 3th5_A 167 PQGLAMAKEIG---AVKYLECSALTQRGLKTVFDEA 199 (204)
Confidence 01111122222 2246779999999999888876
No 372
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.52 E-value=0.025 Score=53.60 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=36.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
....++.+++|+|+.++..++ ..+.+++...... .... ....|+++|+||+||.... ....+.+++.+.
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~----~~~~--~~~~piilv~nK~Dl~~~~-~~~~~~~~l~~~ 143 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQREV-KDVAEFLYQVLID----SMAL--KNSPSLLIACNKQDIAMAK-SAKLIQQQLEKE 143 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHHH-HHHHHHHHHHHHH----HHTS--TTCCEEEEEEECTTSTTCC-CHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCcCHHH-HHHHHHHHHHHhh----hhhc--ccCCCEEEEEECCCCCCcc-cHHHHHHHHHHH
Confidence 356789999999998743221 1222222211000 0000 0124899999999998653 234444555443
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.51 E-value=0.0057 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 374
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=95.49 E-value=0.017 Score=63.67 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=33.5
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~ 255 (601)
...+..+|.+|+|+|+.+........+.+.+.. . + .|+++|+||+|+...
T Consensus 100 ~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~----------~----~-iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 100 YRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL----------R----H-TPIMTFINKMDRDTR 149 (528)
T ss_dssp HHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT----------T----T-CCEEEEEECTTSCCS
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----------c----C-CCEEEEEeCCCCccc
Confidence 345567999999999998654333333333221 1 2 389999999999653
No 375
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.46 E-value=0.0064 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.+++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999998643
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.45 E-value=0.0058 Score=56.75 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=52.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHH-HHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-------------CCC
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKV-AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLS 258 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i-~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-------------~~~ 258 (601)
....+|.+++|+|+.+.. ++. .+ ..++... ..+.. + .|+++|+||+|+... ...
T Consensus 75 ~~~~~~~~i~v~d~~~~~-s~~-~~~~~~~~~i-----~~~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~ 142 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPE-TLD-SVLKKWKGEI-----QEFCP----N-TKMLLVGCKSDLRTDVSTLVELSNHRQTPVS 142 (184)
T ss_dssp GCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-----HHHCT----T-CEEEEEEECGGGGGCHHHHHHHHTTTCCCCC
T ss_pred hcCCCcEEEEEEECCCHH-HHH-HHHHHHHHHH-----HHHCC----C-CCEEEEEEcchhhcchhhHhhhhhcccCCCC
Confidence 456789999999998743 222 22 2222211 01111 2 389999999999742 223
Q ss_pred hhHHHHHHHHHHHHcCCCccceEEEEEeE-eecCCccccchhhh
Q 007511 259 PTRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVD 301 (601)
Q Consensus 259 ~~~l~~w~~~~~~~~g~~~~~~V~lvSa~-kg~G~~~LL~~I~~ 301 (601)
.+....|. +..+ ...++.+|++ .+.|.+++++.+..
T Consensus 143 ~~~~~~~~----~~~~---~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 143 YDQGANMA----KQIG---AATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp HHHHHHHH----HHHT---CSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHcC---CcEEEEeeecCCCcCHHHHHHHHHH
Confidence 33344443 3333 2357788997 68888888877643
No 377
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.43 E-value=0.0031 Score=60.86 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++||||||+.+.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999865
No 378
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.43 E-value=0.009 Score=56.70 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.8
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|||||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999863
No 379
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.42 E-value=0.0054 Score=57.03 Aligned_cols=22 Identities=41% Similarity=0.678 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.++++|.+|||||||+|.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999864
No 380
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.41 E-value=0.0065 Score=54.74 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999863
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.41 E-value=0.0064 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57889999999999999998754
No 382
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.39 E-value=0.0048 Score=70.41 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|..|+|||||+|+|+|..
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68889999999999999999865
No 383
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.37 E-value=0.0062 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+++++|..|||||||+|.+++.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 384
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=95.36 E-value=0.015 Score=60.06 Aligned_cols=95 Identities=13% Similarity=0.045 Sum_probs=53.2
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|.|++|+|+.+.. ++. .+...+...... .. ....|+++|+||+|+.... ....+.. .....
T Consensus 229 ~~~~ad~vilV~D~~~~~-s~~-~~~~~~~~~~~~----~~----~~~~piilV~NK~Dl~~~~-~~~~i~~---~~~~~ 294 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRE-RVN-EAREELMRMLAE----DE----LRDAVLLVFANKQDLPNAM-NAAEITD---KLGLH 294 (329)
T ss_dssp HHTTEEEEEEEEETTCSS-SHH-HHHHHHHHHHTC----GG----GTTCEEEEEEECTTSTTCC-CHHHHHH---HHTCT
T ss_pred HhccCCEEEEEEECCchH-HHH-HHHHHHHHHHhh----hc----cCCCeEEEEEECccCCccc-CHHHHHH---Hhchh
Confidence 345689999999998854 332 233322211100 00 0124899999999997542 2222222 21110
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
........++.+|+..+.|+.++++.|..
T Consensus 295 ~~~~~~~~~~~vSAk~g~gi~el~~~l~~ 323 (329)
T 3o47_A 295 SLRHRNWYIQATCATSGDGLYEGLDWLSN 323 (329)
T ss_dssp TCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred hhhcCCCEEEEEECCCCcCHHHHHHHHHH
Confidence 00001125778899999999988887743
No 385
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.36 E-value=0.021 Score=53.67 Aligned_cols=88 Identities=17% Similarity=0.089 Sum_probs=51.8
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCC-------CCCChhHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLP-------SSLSPTRFEHWV 266 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp-------~~~~~~~l~~w~ 266 (601)
...+|.+++|+|+.+... + ..+..++... . .... ...|+++|+||+|+.. ..........|
T Consensus 98 ~~~~d~iilv~d~~~~~s-~-~~~~~~~~~i-~----~~~~----~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~- 165 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKS-F-LNIREWVDMI-E----DAAH----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL- 165 (199)
T ss_dssp HHHCSEEEEEEETTCHHH-H-HTHHHHHHHH-H----HHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH-
T ss_pred HhhCCEEEEEEECCChHH-H-HHHHHHHHHH-H----HhcC----CCCCEEEEEECcccccccccccccccCHHHHHHH-
Confidence 345899999999987532 1 2233333211 0 0000 1138999999999962 22222333333
Q ss_pred HHHHHHcCCCccceEEEEEeEeecCCccccchhh
Q 007511 267 RQRAREDGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 267 ~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
++..+ ..++.+|+..+.|..+++..+.
T Consensus 166 ---~~~~~----~~~~~~SA~~g~gv~el~~~l~ 192 (199)
T 2p5s_A 166 ---AMTYG----ALFCETSAKDGSNIVEAVLHLA 192 (199)
T ss_dssp ---HHHHT----CEEEECCTTTCTTHHHHHHHHH
T ss_pred ---HHHcC----CeEEEeeCCCCCCHHHHHHHHH
Confidence 33334 2577899999999988887763
No 386
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.36 E-value=0.021 Score=53.89 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=53.7
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++.... .... ...|+++|+||+|+... .........| ++.
T Consensus 95 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~ 159 (200)
T 2o52_A 95 YRGAAGALLVYDITSRE-TY-NSLAAWLTDAR-----TLAS----PNIVVILCGNKKDLDPEREVTFLEASRF----AQE 159 (200)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHTC----TTCEEEEEEECGGGGGGCCSCHHHHHHH----HHH
T ss_pred hccCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhcC----CCCcEEEEEECCCcccccccCHHHHHHH----HHH
Confidence 45689999999998753 21 22333333210 0010 12389999999999753 2333334443 333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+..+.|...+++.+.
T Consensus 160 ~~----~~~~~~SA~~g~gi~~l~~~l~ 183 (200)
T 2o52_A 160 NE----LMFLETSALTGENVEEAFLKCA 183 (200)
T ss_dssp TT----CEEEEECTTTCTTHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 33 3577899999999888877763
No 387
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.35 E-value=0.0069 Score=54.62 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999998643
No 388
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.35 E-value=0.0054 Score=58.56 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=52.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-------------CCCh
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SLSP 259 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-------------~~~~ 259 (601)
....+|.+++|+|+.+.. ++......++... . .+.. + .|+++|+||+|+... .+..
T Consensus 96 ~~~~~d~~ilv~D~~~~~-s~~~~~~~~~~~i-~----~~~~----~-~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~ 164 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPE-TLDSVLKKWKGEI-Q----EFCP----N-TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSY 164 (205)
T ss_dssp GCTTCSEEEEEEETTCHH-HHHHHHHTHHHHH-H----HHCT----T-CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCH
T ss_pred hccCCCEEEEEEECCCHH-HHHHHHHHHHHHH-H----HHCC----C-CCEEEEEechhhccchhhhhhhcccccCCCCH
Confidence 456789999999998743 2221112222211 0 1111 2 389999999999742 1222
Q ss_pred hHHHHHHHHHHHHcCCCccceEEEEEeE-eecCCccccchhhh
Q 007511 260 TRFEHWVRQRAREDGISKITKLHFVSAV-KNWGLKSLIDDVVD 301 (601)
Q Consensus 260 ~~l~~w~~~~~~~~g~~~~~~V~lvSa~-kg~G~~~LL~~I~~ 301 (601)
.....|. +..+ ...++.+|++ .+.|.+++++.+..
T Consensus 165 ~~~~~~~----~~~~---~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 165 DQGANMA----KQIG---AATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp HHHHHHH----HHHT---CSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHcC---CCEEEEeeeccCCcCHHHHHHHHHH
Confidence 3333433 3333 1357788997 67888888877643
No 389
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.34 E-value=0.0084 Score=64.98 Aligned_cols=128 Identities=10% Similarity=0.081 Sum_probs=66.3
Q ss_pred HhhhccCCcEEEEEEeCCCCCC--Ccc--HHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCC-ChhHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDG--SFP--RKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSL-SPTRFEH 264 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~--s~~--~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~-~~~~l~~ 264 (601)
....+..+|.+++|||+.+..+ ++. ....+.+... ... +.+++++|+||+|+...+. ....+..
T Consensus 102 ~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-------~~~----~v~~iivviNK~Dl~~~~~~~~~~i~~ 170 (458)
T 1f60_A 102 MITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-------FTL----GVRQLIVAVNKMDSVKWDESRFQEIVK 170 (458)
T ss_dssp HHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-------HHT----TCCEEEEEEECGGGGTTCHHHHHHHHH
T ss_pred HHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-------HHc----CCCeEEEEEEccccccCCHHHHHHHHH
Confidence 3345678999999999987431 111 0111221111 011 2235899999999984210 1112333
Q ss_pred HHHHHHHHcCCCc-cceEEEEEeEeecCCccccchhhhhcccCCcEEEECCCCC--chhHHHHHHhccccCC
Q 007511 265 WVRQRAREDGISK-ITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQNA--GKSTLLNAIAKSVDAG 333 (601)
Q Consensus 265 w~~~~~~~~g~~~-~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~nGa--GKSTLLn~L~g~~~~~ 333 (601)
.++.+++..+... ...++.+|+..+.|..++.....-+ .+. -..=++|. | .+|+.+|-.+..|.
T Consensus 171 ~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~~~~~~~---~~~-~~~~~tg~~~~-~~Ll~~l~~~~~p~ 237 (458)
T 1f60_A 171 ETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWY---KGW-EKETKAGVVKG-KTLLEAIDAIEQPS 237 (458)
T ss_dssp HHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCCSSCTTC---CCE-EEECSSSEEEE-SSHHHHHHTSCCCC
T ss_pred HHHHHHHHcCCCccCceEEEeecccCcCcccccccCchh---hcc-cccccccccch-HHHHHHhhccCCCc
Confidence 3444455555310 1368899999999987665443111 110 01111111 2 37999987654443
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.34 E-value=0.0045 Score=68.69 Aligned_cols=32 Identities=38% Similarity=0.469 Sum_probs=26.2
Q ss_pred ccCCc-EEEECCCCCchhHHHHHHhccccCCCC
Q 007511 304 GKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 304 ~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
+.+|. ++++|+||||||||+++|++.+.+..|
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 34565 556999999999999999999877654
No 391
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.33 E-value=0.012 Score=55.02 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=53.2
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+.. ++ ..+..++.... ..... ...|+++|+||+|+... .........|.. ..
T Consensus 97 ~~~d~iilv~D~~~~~-s~-~~~~~~~~~i~-----~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~~ 162 (196)
T 2atv_A 97 RWGEGFVLVYDITDRG-SF-EEVLPLKNILD-----EIKKP---KNVTLILVGNKADLDHSRQVSTEEGEKLAT----EL 162 (196)
T ss_dssp HHCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHHTT---SCCCEEEEEECGGGGGGCCSCHHHHHHHHH----HH
T ss_pred ccCCEEEEEEECcCHH-HH-HHHHHHHHHHH-----HhhCC---CCCcEEEEEECcccccccccCHHHHHHHHH----Hh
Confidence 4589999999998753 22 22333322110 01100 12389999999999763 333344444433 33
Q ss_pred CCCccceEEEEEeEeec-CCccccchhh
Q 007511 274 GISKITKLHFVSAVKNW-GLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~-G~~~LL~~I~ 300 (601)
+ ..++.+|+..+. |..++++.+.
T Consensus 163 ~----~~~~~~Sa~~g~~gi~~l~~~l~ 186 (196)
T 2atv_A 163 A----CAFYECSACTGEGNITEIFYELC 186 (196)
T ss_dssp T----SEEEECCTTTCTTCHHHHHHHHH
T ss_pred C----CeEEEECCCcCCcCHHHHHHHHH
Confidence 3 257889999999 8888877763
No 392
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.32 E-value=0.011 Score=56.52 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
..+|++++|+|+.+.. ++ ..+..++.... .... + .|+++|+||+|+....... ....|. +..+
T Consensus 86 ~~~~~~i~v~d~~~~~-s~-~~~~~~~~~~~-----~~~~----~-~p~ilv~nK~Dl~~~~~~~-~~~~~~----~~~~ 148 (221)
T 3gj0_A 86 IQAQCAIIMFDVTSRV-TY-KNVPNWHRDLV-----RVCE----N-IPIVLCGNKVDIKDRKVKA-KSIVFH----RKKN 148 (221)
T ss_dssp TTCCEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHST----T-CCEEEEEECTTSSSCSSCG-GGCCHH----HHHT
T ss_pred hcCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhCC----C-CCEEEEEECCccccccccH-HHHHHH----HHcC
Confidence 4689999999999743 21 22333333211 0111 2 3899999999997654322 233332 2233
Q ss_pred CCccceEEEEEeEeecCCccccchhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..++.+|+..+.|...+++.+.
T Consensus 149 ----~~~~~~Sa~~~~gi~~l~~~l~ 170 (221)
T 3gj0_A 149 ----LQYYDISAKSNYNFEKPFLWLA 170 (221)
T ss_dssp ----CEEEECBGGGTBTTTHHHHHHH
T ss_pred ----CEEEEEeCCCCCCHHHHHHHHH
Confidence 2577889999999988887773
No 393
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.007 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.7
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|.+|||||||+|.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68889999999999999999754
No 394
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.31 E-value=0.0025 Score=68.46 Aligned_cols=58 Identities=31% Similarity=0.334 Sum_probs=32.6
Q ss_pred cEEEECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccc--hhhhhccCCCcC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPA--QAKLFDTPGLLH 380 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~--~~~llDtpGL~~ 380 (601)
.|+++|..|+|||||+|.|++... ...+..+++|.+.......+.+ ...++||||...
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~~---------------~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQNV---------------SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC---------------CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 578899999999999999986431 1123345666443332222221 357899999975
No 395
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=95.30 E-value=0.01 Score=65.84 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.1
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|..|||||||+|.|+|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68889999999999999999865
No 396
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.28 E-value=0.0076 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999863
No 397
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.27 E-value=0.018 Score=65.44 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=21.5
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.++++|.+|+|||||++.|++...+
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHHHhcCC
Confidence 5777999999999999999976543
No 398
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.25 E-value=0.014 Score=65.22 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=69.3
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
.+..+|.+++|||+.+.............. .. + .|+++|+||+|+...+ .. ....+....
T Consensus 93 ~l~~aD~aILVVDa~~gv~~qt~~~~~~a~----------~~----~-ipiIvviNKiDl~~a~--~~---~v~~el~~~ 152 (600)
T 2ywe_A 93 ALAACEGALLLIDASQGIEAQTVANFWKAV----------EQ----D-LVIIPVINKIDLPSAD--VD---RVKKQIEEV 152 (600)
T ss_dssp HHHTCSEEEEEEETTTBCCHHHHHHHHHHH----------HT----T-CEEEEEEECTTSTTCC--HH---HHHHHHHHT
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHH----------HC----C-CCEEEEEeccCccccC--HH---HHHHHHHHh
Confidence 345689999999999875432221111111 11 2 3799999999997542 22 222333333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhhhcccC-----C--cEEE---ECCCCCchhHHHHHHhccccC
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVDLAGKR-----G--NVWA---IGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~-----G--~v~i---vG~nGaGKSTLLn~L~g~~~~ 332 (601)
.+. ...+++.+|+.++.|...+++.+......+ + ...+ .=.++.|+-++.+...|.++.
T Consensus 153 lg~-~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~ 221 (600)
T 2ywe_A 153 LGL-DPEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKP 221 (600)
T ss_dssp SCC-CGGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECT
T ss_pred hCC-CcccEEEEEeecCCCchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEec
Confidence 343 234688999999999999988875443221 1 1111 112466776666666666543
No 399
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=95.23 E-value=0.016 Score=64.93 Aligned_cols=86 Identities=21% Similarity=0.298 Sum_probs=46.0
Q ss_pred ccCCcEEEEEEeCCCCC-------CCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH---HH
Q 007511 194 SGARSVVLMVVDAADFD-------GSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR---FE 263 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~-------~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~---l~ 263 (601)
+..+|++|+|||+.+.+ .........++.. .| .+++++|+||+|+...+ ... +.
T Consensus 276 ~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----------lg----ip~iIvviNKiDl~~~~--~~~~~~i~ 339 (592)
T 3mca_A 276 ASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----------LG----ISEIVVSVNKLDLMSWS--EDRFQEIK 339 (592)
T ss_dssp ------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----------SS----CCCEEEEEECGGGGTTC--HHHHHHHH
T ss_pred HhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----------cC----CCeEEEEEecccccccc--HHHHHHHH
Confidence 34689999999999743 2222333333221 12 23599999999997531 222 23
Q ss_pred HHHHHHH-HHcCCC-ccceEEEEEeEeecCCccc
Q 007511 264 HWVRQRA-REDGIS-KITKLHFVSAVKNWGLKSL 295 (601)
Q Consensus 264 ~w~~~~~-~~~g~~-~~~~V~lvSa~kg~G~~~L 295 (601)
..+..++ +..|.. .-..++.+|+.++.|+...
T Consensus 340 ~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 340 NIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp HHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred HHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 3333444 334431 1125788999999998643
No 400
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.026 Score=54.13 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=53.7
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAR 271 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~ 271 (601)
....+|.+++|+|+.+.. ++ ..+.+++.... . .. . ...|+++|+||+|+... .........|. +
T Consensus 82 ~~~~~d~vilV~D~~~~~-s~-~~~~~~l~~i~-~----~~-~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~----~ 146 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSS-SY-ENCNHWLSELR-E----NA-D---DNVAVGLIGNKSDLAHLRAVPTEESKTFA----Q 146 (223)
T ss_dssp GTTTCCEEEEEEC-CCHH-HH-HHHHHHHHHHH-H----HC-C-----CEEEEEECCGGGGGGCCSCHHHHHHHH----H
T ss_pred HhccCCEEEEEEeCCCHH-HH-HHHHHHHHHHH-H----hC-C---CCCeEEEEEECcccccccccCHHHHHHHH----H
Confidence 345689999999998753 22 22333333210 0 00 0 12389999999999753 33333444443 3
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
..+ ..++.+|+..+.|+..+++.+...
T Consensus 147 ~~~----~~~~~~Sa~~~~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 147 ENQ----LLFTETSALNSENVDKAFEELINT 173 (223)
T ss_dssp HTT----CEEEECCCC-CCCHHHHHHHHHHH
T ss_pred HcC----CEEEEEeCCCCCCHHHHHHHHHHH
Confidence 333 257789999999999888777443
No 401
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.21 E-value=0.0081 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.|++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57889999999999999999743
No 402
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.013 Score=52.84 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=52.7
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+... + ..+..++... . ..... ..+ .|+++|+||+|+.+. .........+ .+..
T Consensus 73 ~~~~~~i~v~d~~~~~~-~-~~~~~~~~~i-~----~~~~~-~~~-~pii~v~nK~Dl~~~~~v~~~~~~~~----~~~~ 139 (172)
T 2erx_A 73 SKGHAFILVYSITSRQS-L-EELKPIYEQI-C----EIKGD-VES-IPIMLVGNKCDESPSREVQSSEAEAL----ARTW 139 (172)
T ss_dssp HHCSEEEEEEETTCHHH-H-HTTHHHHHHH-H----HHHC----C-CCEEEEEECGGGGGGCCSCHHHHHHH----HHHH
T ss_pred ccCCEEEEEEECcCHHH-H-HHHHHHHHHH-H----HHhCC-CCC-CCEEEEEEccccccccccCHHHHHHH----HHHh
Confidence 45899999999987431 1 1122222111 0 00100 012 379999999999754 2232233333 3333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+ ..++.+|+..+.|..++++.+.+.
T Consensus 140 ~----~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (172)
T 2erx_A 140 K----CAFMETSAKLNHNVKELFQELLNL 164 (172)
T ss_dssp T----CEEEECBTTTTBSHHHHHHHHHHT
T ss_pred C----CeEEEecCCCCcCHHHHHHHHHHH
Confidence 3 257889999999999988887543
No 403
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.19 E-value=0.0082 Score=54.88 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|..|||||||+|.+++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57889999999999999998743
No 404
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=95.18 E-value=0.007 Score=64.96 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=52.5
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
.....+|.+++|+|+ . ..+....+.+.+... + .|+++|+||+|+...... +...++.+
T Consensus 109 ~~l~~aD~vllVvD~-~-~~~~~~~~l~~l~~~--------------~-~piIvV~NK~Dl~~~~~~-----~~~~~l~~ 166 (423)
T 3qq5_A 109 RVFYRADCGILVTDS-A-PTPYEDDVVNLFKEM--------------E-IPFVVVVNKIDVLGEKAE-----ELKGLYES 166 (423)
T ss_dssp HHHTSCSEEEEECSS-S-CCHHHHHHHHHHHHT--------------T-CCEEEECCCCTTTTCCCT-----HHHHHSSC
T ss_pred HHHhcCCEEEEEEeC-C-ChHHHHHHHHHHHhc--------------C-CCEEEEEeCcCCCCccHH-----HHHHHHHH
Confidence 445679999999999 2 222223333333221 1 389999999999865422 22222222
Q ss_pred HcCCCccceEEEEEeEeecCCccccchhhhh
Q 007511 272 EDGISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
..+ ..++.+|++.+.|..++++.+...
T Consensus 167 ~~g----~~v~~vSAktg~gI~eL~~~L~~~ 193 (423)
T 3qq5_A 167 RYE----AKVLLVSALQKKGFDDIGKTISEI 193 (423)
T ss_dssp CTT----CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred HcC----CCEEEEECCCCCCHHHHHHHHHHh
Confidence 223 256788999999999988888544
No 405
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.17 E-value=0.0084 Score=56.46 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|++||.+|||||||+|.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999974
No 406
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.16 E-value=0.0087 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.6
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+++++|.+|||||||+|.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999999863
No 407
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.15 E-value=0.01 Score=64.47 Aligned_cols=84 Identities=26% Similarity=0.350 Sum_probs=51.3
Q ss_pred HhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHH
Q 007511 190 LMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQR 269 (601)
Q Consensus 190 l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~ 269 (601)
....+..+|+|++|+|+.+........+.+.+. + .|+++|+||+|+.+.... ..+..
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~----------------~-~piivV~NK~Dl~~~~~~-~~~~~----- 353 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVK----------------H-RPLILVMNKIDLVEKQLI-TSLEY----- 353 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT----------------T-SCEEEEEECTTSSCGGGS-TTCCC-----
T ss_pred HhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc----------------C-CcEEEEEECCCCCcchhh-HHHHH-----
Confidence 334567799999999999865433333333221 1 279999999999864211 00000
Q ss_pred HHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 270 AREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 270 ~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.. ....++.+|++.+.|...+++.+.+
T Consensus 354 ---~~--~~~~~i~iSAktg~Gi~eL~~~i~~ 380 (462)
T 3geh_A 354 ---PE--NITQIVHTAAAQKQGIDSLETAILE 380 (462)
T ss_dssp ---CT--TCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred ---hc--cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 00 1235778888888888887777743
No 408
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.13 E-value=0.021 Score=55.26 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=56.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...++.+++|.|+.+.. |+ ..+.+++..... .. + ...|++||.||+||... .+..+....|. ++
T Consensus 83 ~~~a~~~ilv~di~~~~-Sf-~~i~~~~~~i~~-----~~-~---~~~piilVgNK~Dl~~~r~V~~~e~~~~a----~~ 147 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVN-SF-QQTTKWIDDVRT-----ER-G---SDVIIMLVGNKTDLADKRQVSIEEGERKA----KE 147 (216)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HTHHHHHHHHHH-----HH-T---TSSEEEEEEECTTCGGGCCSCHHHHHHHH----HH
T ss_pred hccccEEEEEeecchhH-HH-HHHHHHHHHHHH-----hc-C---CCCeEEEEeeccchHhcCcccHHHHhhHH----HH
Confidence 45689999999998853 22 234444432211 01 1 12489999999999754 34445555554 34
Q ss_pred cCCCccceEEEEEeEeecCCccccchh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
.+. ..+-+||+.+.|++++++.|
T Consensus 148 ~~~----~~~e~SAktg~nV~e~F~~i 170 (216)
T 4dkx_A 148 LNV----MFIETSAKAGYNVKQLFRRV 170 (216)
T ss_dssp HTC----EEEEEBTTTTBSHHHHHHHH
T ss_pred hCC----eeEEEeCCCCcCHHHHHHHH
Confidence 442 35678999999999988877
No 409
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.13 E-value=0.0089 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.8
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|||||||+|.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999863
No 410
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.12 E-value=0.0096 Score=54.39 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 57889999999999999999643
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.11 E-value=0.009 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999999743
No 412
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.11 E-value=0.0089 Score=55.20 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999964
No 413
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.10 E-value=0.0068 Score=63.64 Aligned_cols=35 Identities=9% Similarity=0.144 Sum_probs=19.9
Q ss_pred ccCCCcCcCCccCCCCHHHHHHhc-cccccCCCEEEe
Q 007511 374 DTPGLLHPNQITTRLTREEQKLVN-INKELKPRTYRI 409 (601)
Q Consensus 374 DtpGL~~~~~~~~~LSgGe~qrv~-iaraL~P~lllL 409 (601)
..|.+.-.|.+...|....++.+. +.+.+. .+++.
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~ 326 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVT 326 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEE
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEE
Confidence 455665578888888876554432 222333 44444
No 414
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.07 E-value=0.029 Score=55.55 Aligned_cols=87 Identities=18% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCcEEEEEEeCCCC-CCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 196 ARSVVLMVVDAADF-DGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 196 ~~dvVv~VVDa~Df-~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
.+|++++|+|+.+. ..++. .+.+++...... . ... + .|+++|+||+||... ..+. -...+++...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~-~~~~~l~~i~~~-~--~~~----~-~piilV~NK~Dl~~~----~~v~-~~~~~~~~~~ 227 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFD-DQLKFVSNLYNQ-L--AKT----K-KPIVVVLTKCDEGVE----RYIR-DAHTFALSKK 227 (255)
T ss_dssp ECCEEEEEEECBC----CHH-HHHHHHHHHHHH-H--HHT----T-CCEEEEEECGGGBCH----HHHH-HHHHHHHTSS
T ss_pred cCCEEEEEEECCCCchhhHH-HHHHHHHHHHHH-h--ccC----C-CCEEEEEEccccccc----HHHH-HHHHHHHhcC
Confidence 58999999999986 23433 344444322110 0 001 1 389999999999642 2222 2333333321
Q ss_pred CCccceEEEEEeEeecCCccccchh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
. ..++.+|+..+.|+.++++.+
T Consensus 228 --~-~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 228 --N-LQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --S-CCEEECBTTTTBSHHHHHHHH
T ss_pred --C-CeEEEEECCCCCCHHHHHHHH
Confidence 1 257789999999988888776
No 415
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.07 E-value=0.023 Score=53.58 Aligned_cols=88 Identities=26% Similarity=0.202 Sum_probs=53.7
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~ 273 (601)
..+|.+++|+|+.+.. ++ ..+..++.... .... ....|+++|+||+||... .........| ++..
T Consensus 95 ~~~d~~ilv~d~~~~~-s~-~~~~~~~~~i~-----~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~----a~~~ 160 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRR-SF-SKVPETLLRLR-----AGRP---HHDLPVILVGNKSDLARSREVSLEEGRHL----AGTL 160 (195)
T ss_dssp HHCSEEEEEEETTCHH-HH-HTHHHHHHHHH-----HHST---TSCCCEEEEEECTTCTTTCCSCHHHHHHH----HHHT
T ss_pred ccCCEEEEEEECCCHH-HH-HHHHHHHHHHH-----HhcC---CCCCCEEEEeechhccccCCcCHHHHHHH----HHHh
Confidence 3589999999998743 21 22333333211 0000 012489999999999754 3333344444 3333
Q ss_pred CCCccceEEEEEeEeecCCccccchhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
+ ..++.+|+..+.|+..+++.+.
T Consensus 161 ~----~~~~e~Sa~~~~~v~~lf~~l~ 183 (195)
T 3cbq_A 161 S----CKHIETSAALHHNTRELFEGAV 183 (195)
T ss_dssp T----CEEEEEBTTTTBSHHHHHHHHH
T ss_pred C----CEEEEEcCCCCCCHHHHHHHHH
Confidence 3 2577899999999988887773
No 416
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.05 E-value=0.0093 Score=56.83 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.0
Q ss_pred CC-cEEEECCCCCchhHHHHHHhccc
Q 007511 306 RG-NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 306 ~G-~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+| .++++|++|||||||.+.|+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44 45669999999999999998765
No 417
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.04 E-value=0.009 Score=57.30 Aligned_cols=25 Identities=44% Similarity=0.511 Sum_probs=20.6
Q ss_pred ccCCcEEEECCCCCchhHHHHHHhc
Q 007511 304 GKRGNVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 304 ~~~G~v~ivG~nGaGKSTLLn~L~g 328 (601)
+.+|-.+++|+||+||||++.+|.-
T Consensus 21 f~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred eCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3455677799999999999999863
No 418
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=95.04 E-value=0.0065 Score=61.81 Aligned_cols=91 Identities=25% Similarity=0.277 Sum_probs=53.7
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHH-HHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-------------CC
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVA-KMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-------------SL 257 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~-~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-------------~~ 257 (601)
.....+|.+++|+|+.+.. ++. .+. .++... . ... .+ .|+++|+||+|+.+. ..
T Consensus 222 ~~~~~~d~~i~v~d~~~~~-s~~-~~~~~~~~~~-~----~~~----~~-~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v 289 (332)
T 2wkq_A 222 LSYPQTDVFLICFSLVSPA-SFH-HVRAKWYPEV-R----HHC----PN-TPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289 (332)
T ss_dssp GGCTTCSEEEEEEETTCHH-HHH-HHHHTHHHHH-H----HHC----TT-SCEEEEEECHHHHTCHHHHHHHHHTTCCCC
T ss_pred HhccCCCEEEEEEeCCCHH-HHH-HHHHHHHHHH-H----hhC----CC-CcEEEEEEchhcccccchhhhccccccccc
Confidence 3456799999999998743 221 121 122111 0 010 12 389999999999753 12
Q ss_pred ChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 258 SPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 258 ~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.......| ++..+ ...++.+|+..+.|...+++.+..
T Consensus 290 ~~~~~~~~----~~~~~---~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 290 TYPQGLAM----AKEIG---AVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp CHHHHHHH----HHHTT---CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHH----HHHcC---CcEEEEecCCCCcCHHHHHHHHHH
Confidence 22223333 33333 236788999999999888877743
No 419
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.03 E-value=0.018 Score=53.74 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=54.1
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++..... ....... + .|+++|+||+|+... .........|.. .
T Consensus 89 ~~~~~~~ilv~d~~~~~-s~-~~~~~~~~~i~~-~~~~~~~----~-~piilv~nK~Dl~~~~~v~~~~~~~~~~----~ 156 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQ-SF-DSSSSYLELLAL-HAKETQR----S-IPALLLGNKLDMAQYRQVTKAEGVALAG----R 156 (187)
T ss_dssp HTTCSEEEEEEETTCHH-HH-HHHHHHHHHHHH-HHHHHCC----C-CCEEEEEECGGGGGGCSSCHHHHHHHHH----H
T ss_pred HhhCCEEEEEEECCCHH-HH-HHHHHHHHHHHH-HhhccCC----C-CCEEEEEECcchhhcCccCHHHHHHHHH----H
Confidence 34589999999998743 22 223333332110 0000001 2 389999999999643 333444555543 3
Q ss_pred cCCCccceEEEEEe-EeecCCccccchhh
Q 007511 273 DGISKITKLHFVSA-VKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa-~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+|+ ..+.|+.++++.+.
T Consensus 157 ~~----~~~~e~Sa~~~g~gv~~lf~~l~ 181 (187)
T 3c5c_A 157 FG----CLFFEVSACLDFEHVQHVFHEAV 181 (187)
T ss_dssp HT----CEEEECCSSSCSHHHHHHHHHHH
T ss_pred cC----CcEEEEeecCccccHHHHHHHHH
Confidence 34 25778899 78889888887763
No 420
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.01 E-value=0.007 Score=55.70 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=19.4
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
.|+++|.+|||||||+|.+++
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688899999999999999984
No 421
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.98 E-value=0.01 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57889999999999999999643
No 422
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.95 E-value=0.011 Score=56.10 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=18.6
Q ss_pred EEEECCCCCchhHHHHHHhc
Q 007511 309 VWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g 328 (601)
++++|++||||||+.+.|++
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999997
No 423
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.94 E-value=0.009 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|++||.+|||||||+|.+++..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 67889999999999999998643
No 424
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.93 E-value=0.011 Score=55.06 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999998743
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.91 E-value=0.01 Score=56.26 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
.|+++|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 367799999999999999998
No 426
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=94.89 E-value=0.043 Score=59.51 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=52.0
Q ss_pred hhccCCcEEEEEEeCCCCCC--C-----ccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhH---
Q 007511 192 SASGARSVVLMVVDAADFDG--S-----FPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTR--- 261 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~--s-----~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~--- 261 (601)
..+..+|.+++|||+.+..+ + .......++.. . +.+++++|+||+|+...+.+.++
T Consensus 140 ~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----------~----~vp~iivviNK~Dl~~~~~~~~~~~~ 205 (467)
T 1r5b_A 140 NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----------Q----GINHLVVVINKMDEPSVQWSEERYKE 205 (467)
T ss_dssp --TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----------T----TCSSEEEEEECTTSTTCSSCHHHHHH
T ss_pred hhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----------c----CCCEEEEEEECccCCCccccHHHHHH
Confidence 34567999999999998641 1 12222222211 1 22249999999999753222222
Q ss_pred HHHHHHHHHHHc-CCC--ccceEEEEEeEeecCCccccc
Q 007511 262 FEHWVRQRARED-GIS--KITKLHFVSAVKNWGLKSLID 297 (601)
Q Consensus 262 l~~w~~~~~~~~-g~~--~~~~V~lvSa~kg~G~~~LL~ 297 (601)
+..-+..+++.. |.. .-..++.+|+..+.|..++++
T Consensus 206 i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~ 244 (467)
T 1r5b_A 206 CVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 244 (467)
T ss_dssp HHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred HHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence 222233444444 431 012477889999999887764
No 427
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.89 E-value=0.012 Score=57.08 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.6
Q ss_pred ccCCcEE-EECCCCCchhHHHHHHhcc
Q 007511 304 GKRGNVW-AIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 304 ~~~G~v~-ivG~nGaGKSTLLn~L~g~ 329 (601)
+.+|.++ ++|+||+|||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3566655 4999999999999999984
No 428
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.87 E-value=0.011 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999864
No 429
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.87 E-value=0.01 Score=55.34 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|||||||+|.|++.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6888999999999999999873
No 430
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.85 E-value=0.0071 Score=57.97 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=17.9
Q ss_pred cEEEECCCCCchhHHHHHHh
Q 007511 308 NVWAIGAQNAGKSTLLNAIA 327 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~ 327 (601)
+|+++|..|||||||+|.++
T Consensus 17 ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58889999999999999944
No 431
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.85 E-value=0.071 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
++++||..|||||||+|.|++..
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 57889999999999999998743
No 432
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.84 E-value=0.01 Score=60.28 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.3
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|..|||||||+|+|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68889999999999999999865
No 433
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.83 E-value=0.012 Score=54.44 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999964
No 434
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.83 E-value=0.01 Score=59.60 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.7
Q ss_pred cEEEECCCCCchhHHHHHHhcccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
.|+++|.+|||||||+|+|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 688999999999999999998653
No 435
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.82 E-value=0.012 Score=54.93 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.7
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.+++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999988863
No 436
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.78 E-value=0.0049 Score=58.09 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=46.9
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~~~ 272 (601)
...+|.+++|+|+.+.. ++ ..+..++... ..-. ....|+++|+||+|+.+.. ........| .+.
T Consensus 103 ~~~~d~~i~v~d~~~~~-s~-~~~~~~~~~i--------~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~----~~~ 167 (199)
T 3l0i_B 103 YRGAHGIIVVYDVTDQE-SF-NNVKQWLQEI--------DRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEF----ADS 167 (199)
T ss_dssp -CCCSEEEECC-CCCSH-HH-HHHHHHHHHH--------HSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHH----HHT
T ss_pred hhcCCEEEEEEECCCHH-HH-HHHHHHHHHH--------HHhc-cCCCCEEEEEECccCCccccCCHHHHHHH----HHH
Confidence 45689999999999853 22 2333443321 0000 1124899999999998642 222233333 233
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+. .++.+|+..+.|..++++.+..
T Consensus 168 ~~~----~~~~vSA~~g~gv~~l~~~l~~ 192 (199)
T 3l0i_B 168 LGI----PFLETSAKNATNVEQSFMTMAA 192 (199)
T ss_dssp TTC----CBCCCCC---HHHHHHHHHHTT
T ss_pred cCC----eEEEEECCCCCCHHHHHHHHHH
Confidence 332 4667899999999888887743
No 437
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.78 E-value=0.012 Score=54.62 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999864
No 438
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.77 E-value=0.011 Score=60.99 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.9
Q ss_pred hhcccCCc-EEEECCCCCchhHHHHHHhccccCCCC
Q 007511 301 DLAGKRGN-VWAIGAQNAGKSTLLNAIAKSVDAGRG 335 (601)
Q Consensus 301 ~l~~~~G~-v~ivG~nGaGKSTLLn~L~g~~~~~~G 335 (601)
++...++. ++++|+||+||||++..|++.+.+..|
T Consensus 99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 34445555 455999999999999999998876554
No 439
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.77 E-value=0.013 Score=55.04 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999864
No 440
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.011 Score=55.04 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58889999999999999999743
No 441
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.74 E-value=0.012 Score=53.59 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=49.8
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHHcC
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~~g 274 (601)
.++++++|+|+.++. .+..++.... +.+ .|+++|+||+|+... ... .....|. +..+
T Consensus 81 ~~~~~i~v~D~~~~~-----~~~~~~~~~~-------~~~-----~p~ilv~nK~Dl~~~~~~~-~~~~~~~----~~~~ 138 (165)
T 2wji_A 81 KPDLVVNIVDATALE-----RNLYLTLQLM-------EMG-----ANLLLALNKMDLAKSLGIE-IDVDKLE----KILG 138 (165)
T ss_dssp CCSEEEEEEETTCHH-----HHHHHHHHHH-------HTT-----CCEEEEEECHHHHHHTTCC-CCHHHHH----HHHT
T ss_pred CCCEEEEEecCCchh-----HhHHHHHHHH-------hcC-----CCEEEEEEchHhccccChh-hHHHHHH----HHhC
Confidence 589999999998742 2233332210 112 389999999998642 111 1233443 2333
Q ss_pred CCccceEEEEEeEeecCCccccchhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..++.+||..+.|.+++++.+.
T Consensus 139 ----~~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 139 ----VKVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHH
T ss_pred ----CCEEEEEcCCCCCHHHHHHHHH
Confidence 2578899999999998887763
No 442
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.74 E-value=0.014 Score=55.49 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred EEEECCCCCchhHHHHHHhccc
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
|+++||+|||||||++.|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999998654
No 443
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.73 E-value=0.005 Score=61.40 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=51.5
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
..+|+|++|+|+.+.. ....+..... .. + .|+++|+||+|+.........+..+ .+..|
T Consensus 82 ~~~d~vi~VvDas~~~-----~~~~l~~~l~-------~~----~-~pvilv~NK~Dl~~~~~~~~~~~~l----~~~lg 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLE-----RHLYLTSQLF-------EL----G-KPVVVALNMMDIAEHRGISIDTEKL----ESLLG 140 (256)
T ss_dssp SCCSEEEEEEEGGGHH-----HHHHHHHHHT-------TS----C-SCEEEEEECHHHHHHTTCEECHHHH----HHHHC
T ss_pred CCCCEEEEEeeCCCch-----hHHHHHHHHH-------Hc----C-CCEEEEEEChhcCCcCCcHHHHHHH----HHHcC
Confidence 5799999999998732 2222221110 01 1 3899999999997542111222222 22334
Q ss_pred CCccceEEEEEeEeecCCccccchhhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..++.+|+.++.|..++++.+..
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~ 163 (256)
T 3iby_A 141 ----CSVIPIQAHKNIGIPALQQSLLH 163 (256)
T ss_dssp ----SCEEECBGGGTBSHHHHHHHHHT
T ss_pred ----CCEEEEECCCCCCHHHHHHHHHh
Confidence 25889999999999988888844
No 444
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.73 E-value=0.013 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.8
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5788999999999999999863
No 445
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.71 E-value=0.019 Score=57.45 Aligned_cols=94 Identities=13% Similarity=0.188 Sum_probs=42.7
Q ss_pred CcEEEEEEeCCC-CCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCC
Q 007511 197 RSVVLMVVDAAD-FDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGI 275 (601)
Q Consensus 197 ~dvVv~VVDa~D-f~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~ 275 (601)
++++++++|... .....+..+.+.+.. + .|+++|+||+|++... ........+.+.+...+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~---------------~-~pvi~V~nK~D~~~~~-e~~~~~~~i~~~l~~~~i 178 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE---------------K-VNIIPLIAKADTLTPE-ECQQFKKQIMKEIQEHKI 178 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTT---------------T-SCEEEEESSGGGSCHH-HHHHHHHHHHHHHHHTTC
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhc---------------c-CCEEEEEeccCCCCHH-HHHHHHHHHHHHHHHcCC
Confidence 567888886654 333233333333321 1 3899999999998531 011122223333444442
Q ss_pred CccceEEEEEeEeecCCccccchhhhhcccCCcEEEECCC
Q 007511 276 SKITKLHFVSAVKNWGLKSLIDDVVDLAGKRGNVWAIGAQ 315 (601)
Q Consensus 276 ~~~~~V~lvSa~kg~G~~~LL~~I~~l~~~~G~v~ivG~n 315 (601)
.++.+|+..+.|...+++.+.+.. ...+||.+
T Consensus 179 ----~v~~~sa~~~~~~~~l~~~l~~~~----p~~vv~s~ 210 (274)
T 3t5d_A 179 ----KIYEFPETDDEEENKLVKKIKDRL----PLAVVGSN 210 (274)
T ss_dssp ----CCCCC-----------CHHHHHTC----SEECCCCC
T ss_pred ----eEEcCCCCCChhHHHHHHHHhcCC----CcEEEEee
Confidence 355678888999888888774331 24446654
No 446
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.012 Score=55.03 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68889999999999999998743
No 447
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.70 E-value=0.013 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58889999999999999998754
No 448
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.69 E-value=0.013 Score=54.70 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999864
No 449
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.68 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6888999999999999999864
No 450
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.68 E-value=0.014 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5788999999999999999964
No 451
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.67 E-value=0.012 Score=54.42 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|.+|||||||+|.+++.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5788999999999999999874
No 452
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.67 E-value=0.028 Score=61.94 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=48.5
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCC-CChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSS-LSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~-~~~~~l~~w~~~~~~~~ 273 (601)
..+|++++|+|+.++. .+..++... .++.. + .|+++|+||+|+.... .....+.. .+...
T Consensus 120 ~~~d~ii~V~D~s~~~-----~~~~~~~~l-----~~~~~----~-~pvilV~NK~Dl~~~~~v~~~~~~~----~~~~~ 180 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDS-----NKHYWLRHI-----EKYGG----K-SPVIVVMNKIDENPSYNIEQKKINE----RFPAI 180 (535)
T ss_dssp HSSEEEEEEECGGGGG-----GHHHHHHHH-----HHHSS----S-CCEEEEECCTTTCTTCCCCHHHHHH----HCGGG
T ss_pred cCCcEEEEEEeCCCch-----hHHHHHHHH-----HHhCC----C-CCEEEEEECCCcccccccCHHHHHH----HHHhc
Confidence 3589999999998752 233333221 01111 2 3899999999998642 23222222 23333
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
+ ..++.+|+..+.|.+.+++.+...
T Consensus 181 ~----~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 181 E----NRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp T----TCEEECCC-----CTTHHHHHHHH
T ss_pred C----CceEEEecCcccCHHHHHHHHHHH
Confidence 3 248899999999999998887543
No 453
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.66 E-value=0.011 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68889999999999999998754
No 454
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.66 E-value=0.048 Score=50.15 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCcc----ceEEEEEeEeecCCccccchhhh
Q 007511 242 RVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKI----TKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 242 ~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~----~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
|+++|+||+|+.... ......| .+..+. .+ ..++.+|+..+.|..++++.+..
T Consensus 124 piilv~nK~Dl~~~~--~~~~~~~----~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 180 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV--QEVINFL----AEKFEV-PLSEIDKVFIPISAKFGDNIERLKNRIFE 180 (190)
T ss_dssp CEEEEEECGGGCSCH--HHHHHHH----HHHHTC-CGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred ceEEEeehHhccCcH--HHHHHHH----HHHhhh-hhhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence 899999999998642 2233333 333442 11 24788999999999888877743
No 455
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.65 E-value=0.014 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.|+++|++|||||||.+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47779999999999999998765
No 456
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.64 E-value=0.014 Score=54.49 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68889999999999999998743
No 457
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.63 E-value=0.019 Score=59.78 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=52.1
Q ss_pred cCCcEEEEEEeCCCCCCCc-cHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHc
Q 007511 195 GARSVVLMVVDAADFDGSF-PRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARED 273 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~-~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~ 273 (601)
..++++++|+|+.++.+.. ...+..++... ..+.... ...|+++|+||+|++.. ...+..+ .+..
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL-----~~~~~~l--~~~p~ilV~NK~Dl~~~---~e~~~~l----~~~l 300 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQEL-----SEYNLRL--TERPQIIVANKMDMPEA---AENLEAF----KEKL 300 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHHHHHHHH-----HHSCSST--TTSCBCBEEECTTSTTH---HHHHHHH----HHHC
T ss_pred HhccEEEEEEECCcccccChHHHHHHHHHHH-----HHhhhhh--cCCCEEEEEECccCCCC---HHHHHHH----HHHh
Confidence 4589999999998864211 12233222211 1111100 12379999999999752 1223332 2222
Q ss_pred CCCccceEEEEEeEeecCCccccchhhhh
Q 007511 274 GISKITKLHFVSAVKNWGLKSLIDDVVDL 302 (601)
Q Consensus 274 g~~~~~~V~lvSa~kg~G~~~LL~~I~~l 302 (601)
.. ...++.+|+..+.|..++++.|...
T Consensus 301 ~~--~~~v~~iSA~tg~gi~eL~~~l~~~ 327 (342)
T 1lnz_A 301 TD--DYPVFPISAVTREGLRELLFEVANQ 327 (342)
T ss_dssp CS--CCCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred hc--CCCEEEEECCCCcCHHHHHHHHHHH
Confidence 21 1356788999999998888877443
No 458
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.62 E-value=0.017 Score=58.06 Aligned_cols=91 Identities=20% Similarity=0.142 Sum_probs=48.3
Q ss_pred HhhhccCCc-EEEEEEeCCCCCCCccH-HHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHH
Q 007511 190 LMSASGARS-VVLMVVDAADFDGSFPR-KVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVR 267 (601)
Q Consensus 190 l~~~~~~~d-vVv~VVDa~Df~~s~~~-~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~ 267 (601)
+...+..++ +|++|+|+.+.....+. .+.+.+.. . + .|+++|+||+|+++.... ...++.
T Consensus 155 ~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----------~----~-~~~i~V~NK~Dl~~~~~~---~~~~~~ 216 (299)
T 2aka_B 155 LMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----------Q----G-QRTIGVITKLDLMDEGTD---ARDVLE 216 (299)
T ss_dssp HHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----------T----C-SSEEEEEECGGGSCTTCC---CHHHHT
T ss_pred HHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----------C----C-CeEEEEEEccccCCCCch---HHHHHh
Confidence 334444444 56689999874332221 22222211 1 1 379999999999865321 122222
Q ss_pred HHHHHcCCCccceEEEEEeEeecCCccccchh
Q 007511 268 QRAREDGISKITKLHFVSAVKNWGLKSLIDDV 299 (601)
Q Consensus 268 ~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I 299 (601)
....... .+...++.+|+..+.|...+++.+
T Consensus 217 ~~~~~~~-~~~~~v~~~SA~~~~gi~~l~~~l 247 (299)
T 2aka_B 217 NKLLPLR-RGYIGVVNRSQKDIDGKKDITAAL 247 (299)
T ss_dssp TCSSCCT-TCEEECCCCCCBCTTSCBCHHHHH
T ss_pred CCcCcCC-CCcEEEECCChhhccccccHHHHH
Confidence 1100000 012346678888888888777766
No 459
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.014 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.|++..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68889999999999999998643
No 460
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.61 E-value=0.017 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.2
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.++++|++|||||||.+.|.+..
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 35669999999999999999865
No 461
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.60 E-value=0.014 Score=54.14 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.6
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
+|+++|..|||||||+|.+.+
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 688899999999999999995
No 462
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.60 E-value=0.015 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhcccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVD 331 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~ 331 (601)
.+.++|++|||||||++.|++.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcc
Confidence 356799999999999999998653
No 463
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=94.58 E-value=0.029 Score=62.80 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=53.9
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCC-------------h
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLS-------------P 259 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~-------------~ 259 (601)
.+..+|.+++|+|+.+..........+++.. . + .|+++|+||+|+.+.... .
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~----------~----~-vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRM----------Y----R-TPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHH----------T----T-CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHH----------c----C-CeEEEEecccccccccccccCCchHHHHHHhH
Confidence 3456899999999998654322223333221 1 2 379999999999753210 0
Q ss_pred hHH----HHHHH---HHHHHcCCC-----------ccceEEEEEeEeecCCccccchhh
Q 007511 260 TRF----EHWVR---QRAREDGIS-----------KITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 260 ~~l----~~w~~---~~~~~~g~~-----------~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
..+ .+.+. ..+.+.+.. ....++.+|+.++.|...+++.+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~ 213 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM 213 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence 111 11111 112222320 123688899999999988887774
No 464
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.56 E-value=0.015 Score=54.66 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68889999999999999998643
No 465
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.085 Score=54.91 Aligned_cols=90 Identities=13% Similarity=0.224 Sum_probs=53.8
Q ss_pred hccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHH
Q 007511 193 ASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRARE 272 (601)
Q Consensus 193 ~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~ 272 (601)
....+|.+++|+|+.+..+--.....+++..... ...+ .|+++|+||+|+... ..+... ...++.
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~-----~~~~-----~piilV~NK~Dl~~~----~~~~~~-~~~~~~ 307 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG-----EFKD-----LPFLVVINKIDVADE----ENIKRL-EKFVKE 307 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH-----HTTT-----SCEEEEECCTTTCCH----HHHHHH-HHHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH-----hcCC-----CCEEEEEECcccCCh----HHHHHH-HHHHHh
Confidence 3445899999999987643112223333332110 0002 389999999999753 222222 222333
Q ss_pred cCCCccceEEEEEeEeecCCccccchhhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
.+ ..++.+|+..+.|...+++.+..
T Consensus 308 ~~----~~~~~iSA~~g~gi~~l~~~i~~ 332 (357)
T 2e87_A 308 KG----LNPIKISALKGTGIDLVKEEIIK 332 (357)
T ss_dssp TT----CCCEECBTTTTBTHHHHHHHHHH
T ss_pred cC----CCeEEEeCCCCcCHHHHHHHHHH
Confidence 33 25778999999999988887743
No 466
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.55 E-value=0.011 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999863
No 467
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.016 Score=55.94 Aligned_cols=22 Identities=50% Similarity=0.536 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|++||.+|||||||+|.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5888999999999999999864
No 468
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.54 E-value=0.043 Score=53.39 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=34.9
Q ss_pred hHHHHHHHhhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC
Q 007511 183 DHTVGRKLMSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS 255 (601)
Q Consensus 183 ~~~~~~~l~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~ 255 (601)
.+.+.+.+.......+++++|+|+.++... .....+.+....... . . .|+++|+||+|++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-~~~~l~~~~~~~~~~-----~----~-~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 99 SKEIIRCILLTSPGPHALLLVVPLGRYTEE-EHKATEKILKMFGER-----A----R-SFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHHHHHHHHTTTCCSEEEEEEETTCCSSH-HHHHHHHHHHHHHHH-----H----G-GGEEEEEECGGGC--
T ss_pred HHHHHHHHHhcCCCCcEEEEEeeCCCCCHH-HHHHHHHHHHHhhhh-----c----c-ceEEEEEeCCccCCc
Confidence 334445555555678999999999865432 222222222110000 0 1 279999999999864
No 469
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.51 E-value=0.016 Score=53.09 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=20.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+++++|..|||||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999863
No 470
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.51 E-value=0.0047 Score=62.15 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=50.5
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
..+|++++|+|+.++. ....++....+ .+ .|+++|+||+|+............+ .+..|
T Consensus 84 ~~~d~ii~VvD~~~~~-----~~~~~~~~l~~-------~~-----~p~ivv~NK~Dl~~~~~~~~~~~~l----~~~lg 142 (274)
T 3i8s_A 84 GDADLLINVVDASNLE-----RNLYLTLQLLE-------LG-----IPCIVALNMLDIAEKQNIRIEIDAL----SARLG 142 (274)
T ss_dssp TCCSEEEEEEEGGGHH-----HHHHHHHHHHH-------HT-----CCEEEEEECHHHHHHTTEEECHHHH----HHHHT
T ss_pred cCCCEEEEEecCCChH-----HHHHHHHHHHh-------cC-----CCEEEEEECccchhhhhHHHHHHHH----HHhcC
Confidence 5799999999998742 22222221100 12 2899999999997532111122332 23334
Q ss_pred CCccceEEEEEeEeecCCccccchhhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..++.+|+.++.|...+++.+..
T Consensus 143 ----~~~i~~SA~~g~gi~el~~~i~~ 165 (274)
T 3i8s_A 143 ----CPVIPLVSTRGRGIEALKLAIDR 165 (274)
T ss_dssp ----SCEEECCCGGGHHHHHHHHHHHT
T ss_pred ----CCEEEEEcCCCCCHHHHHHHHHH
Confidence 25788999999988888877743
No 471
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.016 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6888999999999999999974
No 472
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.016 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=0.0
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
.++++|++|||||||+|.|++
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
No 473
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=94.46 E-value=0.01 Score=66.47 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.6
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.|+++|..|+|||||+|.|++.
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999764
No 474
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.44 E-value=0.05 Score=64.89 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=50.0
Q ss_pred hhhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHH
Q 007511 191 MSASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRA 270 (601)
Q Consensus 191 ~~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~ 270 (601)
...+..+|.+++|||+.+...........++... + .+.+++|+||+|+.......+.+..-++.++
T Consensus 377 i~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l----------g----IP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 377 ITGAAQMDGAILVVAATDGPMPQTREHILLGRQV----------G----VPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp HHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH----------T----CSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc----------C----CCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 3456679999999999997655444333333211 2 2238899999999852100111223334445
Q ss_pred HHcCCC-ccceEEEEEeEeec
Q 007511 271 REDGIS-KITKLHFVSAVKNW 290 (601)
Q Consensus 271 ~~~g~~-~~~~V~lvSa~kg~ 290 (601)
+..|.. ....++.+|+..++
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTT
T ss_pred HhccccccceeEEEEEeccCC
Confidence 555421 12357888998873
No 475
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.43 E-value=0.016 Score=60.97 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.8
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
.+++||.+|||||||+|+|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47889999999999999999864
No 476
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.43 E-value=0.017 Score=54.86 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5888999999999999999964
No 477
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=94.38 E-value=0.03 Score=60.94 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=53.6
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAR 271 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~ 271 (601)
..+..+|+|++|+|+.+.. ++ ..+..++...... .... + .|+++|+||+||.... ....+..
T Consensus 385 ~~~~~ad~~i~V~D~~~~~-s~-~~~~~~~~~~~~~---~~~~----~-~p~ilv~NK~Dl~~~~-~~~~~~~------- 446 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRD-RI-DEARQELHRIIND---REMR----D-AIILIFANKQDLPDAM-KPHEIQE------- 446 (497)
T ss_dssp GGGTTCCEEEEEEETTCGG-GH-HHHHHHHHHHHTS---GGGT----T-CEEEEEEECCSSSSCC-CHHHHHH-------
T ss_pred HHhccCCEEEEEEECcchh-HH-HHHHHHHHHHhhh---hhcC----C-CcEEEEEECCCCCcCC-CHHHHHH-------
Confidence 4567799999999999853 22 2233332221100 0001 2 3899999999997542 2222222
Q ss_pred HcCCC----ccceEEEEEeEeecCCccccchhhh
Q 007511 272 EDGIS----KITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 272 ~~g~~----~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..+.. ....++.+|+.++.|+.++++.|..
T Consensus 447 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 480 (497)
T 3lvq_E 447 KLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 480 (497)
T ss_dssp HTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred HhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 11210 1224778899999999888887743
No 478
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.38 E-value=0.018 Score=59.43 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=24.6
Q ss_pred cEEEECCCCCchhHHHHHHhc-cccCCCCCc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK-SVDAGRGGD 337 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g-~~~~~~G~i 337 (601)
.++++|++|+|||||+++|++ +..+..|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i 68 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRL 68 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence 367799999999999999999 667766643
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.014 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+++..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68889999999999999999743
No 480
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.31 E-value=0.013 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=9.0
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5788999999999999999853
No 481
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.26 E-value=0.017 Score=54.96 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.6
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68889999999999999999743
No 482
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.24 E-value=0.024 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.4
Q ss_pred cEEEECCCCCchhHHHHHHhc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g 328 (601)
+|+++|..|||||||+|.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688899999999999999975
No 483
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.23 E-value=0.016 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.0
Q ss_pred cEEEECCCCCchhHHHHHHhccccC
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
.++++|.+||||||+.+.|.+.+.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3566999999999999999987643
No 484
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.23 E-value=0.019 Score=53.91 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|.+|||||||+|.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68889999999999999998743
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.22 E-value=0.019 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.6
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+++.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6888999999999999999863
No 486
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.20 E-value=0.0053 Score=57.14 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHH----HHHHHHHH
Q 007511 196 ARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFE----HWVRQRAR 271 (601)
Q Consensus 196 ~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~----~w~~~~~~ 271 (601)
.++++++|+|+.+...++ ..+..++..... ... + .|+++|+||+|+... ..+. .....+.+
T Consensus 79 ~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~-----~~~----~-~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~ 143 (184)
T 2zej_A 79 QRALYLAVYDLSKGQAEV-DAMKPWLFNIKA-----RAS----S-SPVILVGTHLDVSDE----KQRKACMSKITKELLN 143 (184)
T ss_dssp HSEEEEEEEEGGGCHHHH-HTHHHHHHHHHH-----HCT----T-CEEEEEEECGGGCCH----HHHHHHHHHHHHHTTT
T ss_pred CCcEEEEEEeCCcchhHH-HHHHHHHHHHHh-----hCC----C-CcEEEEEECCCcccc----hhhHHHHHHHHHHHHH
Confidence 478889999998853332 234444432110 001 2 389999999999642 1221 22222222
Q ss_pred HcCCCccceEEEEEeEeec-CCccccchh
Q 007511 272 EDGISKITKLHFVSAVKNW-GLKSLIDDV 299 (601)
Q Consensus 272 ~~g~~~~~~V~lvSa~kg~-G~~~LL~~I 299 (601)
..+......++.+||+.+. +...+++.+
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i 172 (184)
T 2zej_A 144 KRGFPAIRDYHFVNATEESDALAKLRKTI 172 (184)
T ss_dssp CTTSCEEEEEEECCTTSCCHHHHHHHHHH
T ss_pred hcCCcchhheEEEecccCchhHHHHHHHH
Confidence 2232111136678888875 666666555
No 487
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.15 E-value=0.022 Score=51.85 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEECCCCCchhHHHHHHhccc
Q 007511 309 VWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 309 v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
|+++|++||||||+.+.|...+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6779999999999999998654
No 488
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.14 E-value=0.01 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.8
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.|++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6888999999999999999853
No 489
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.015 Score=59.99 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=30.8
Q ss_pred cCCccccchhhhhcccCCc---EEEECCCCCchhHHHHHHhccccC
Q 007511 290 WGLKSLIDDVVDLAGKRGN---VWAIGAQNAGKSTLLNAIAKSVDA 332 (601)
Q Consensus 290 ~G~~~LL~~I~~l~~~~G~---v~ivG~nGaGKSTLLn~L~g~~~~ 332 (601)
+|...+++.+ ...+..|. +++.|++|+||||+++++++.+.+
T Consensus 28 ~g~~~~~~~L-~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 28 YGQNEVITTV-RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp CSCHHHHHHH-HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHH-HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3556677776 44444554 566999999999999999987643
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.09 E-value=0.02 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.5
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+|+++|..|||||||+|.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68889999999999999999743
No 491
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.09 E-value=0.018 Score=62.66 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+++++|..|+|||||+|.|++.
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5788999999999999999876
No 492
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.04 E-value=0.022 Score=58.48 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCCCCCChhHHHHHHHHHHHHcCCCccceEEEEEeEeecCCccccchhhh------------hcccCC-cE
Q 007511 243 VVLVVTKIDLLPSSLSPTRFEHWVRQRAREDGISKITKLHFVSAVKNWGLKSLIDDVVD------------LAGKRG-NV 309 (601)
Q Consensus 243 vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~------------l~~~~G-~v 309 (601)
..+|++|.|..|+ .+. +.+++.++ .|+.++.........+...+.. +.+ .| -+
T Consensus 82 P~IIltrg~~~pe-----eli----e~A~~~~I----PVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~-~g~~v 147 (314)
T 1ko7_A 82 PAIIVTRDLEPPE-----ELI----EAAKEHET----PLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDV-YGVGV 147 (314)
T ss_dssp CCEEECTTCCCCH-----HHH----HHHHHTTC----CEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEE-TTEEE
T ss_pred CEEEEeCCCCCCH-----HHH----HHHHHCCC----eEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEE-CCEEE
Confidence 4678899998753 222 23444442 3555554444444444333321 111 24 46
Q ss_pred EEECCCCCchhHHHHHHhc
Q 007511 310 WAIGAQNAGKSTLLNAIAK 328 (601)
Q Consensus 310 ~ivG~nGaGKSTLLn~L~g 328 (601)
.++|++|+|||||...|.+
T Consensus 148 l~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHh
Confidence 6799999999999999986
No 493
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=94.03 E-value=0.022 Score=61.38 Aligned_cols=23 Identities=43% Similarity=0.398 Sum_probs=20.2
Q ss_pred cEEEECCCCCchhHHHHHHhccc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKSV 330 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~~ 330 (601)
+++++|..|+|||||+|.|++..
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHc
Confidence 57889999999999999997653
No 494
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.83 E-value=0.023 Score=53.60 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.9
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||+|.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5788999999999999999864
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.82 E-value=0.026 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.1
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
+|+++|..|||||||++.+++.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6888999999999999999864
No 496
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.77 E-value=0.071 Score=55.89 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=52.9
Q ss_pred hhccCCcEEEEEEeCCCCCCCccHHH---HHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHH
Q 007511 192 SASGARSVVLMVVDAADFDGSFPRKV---AKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQ 268 (601)
Q Consensus 192 ~~~~~~dvVv~VVDa~Df~~s~~~~i---~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~ 268 (601)
.....+|++++|+|+.+........+ .+++... +. ...|+++|+||+|++... .......+..
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----------~~--~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~ 318 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREI----------GV--SGKPILVTLNKIDKINGD--LYKKLDLVEK 318 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----------TC--CSCCEEEEEECGGGCCSC--HHHHHHHHHH
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----------Cc--CCCCEEEEEECCCCCCch--HHHHHHHHHH
Confidence 34567999999999987531112112 2222211 10 113799999999998642 1111122222
Q ss_pred HHHHcCCCccceEEEEEeEeecCCccccchhhh
Q 007511 269 RAREDGISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 269 ~~~~~g~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
+.+..+. .-..++.+|+..+.|...+++.|..
T Consensus 319 l~~~l~~-~~~~~~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 319 LSKELYS-PIFDVIPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHCS-CEEEEEECBTTTTBSHHHHHHHHHH
T ss_pred HHHHhcC-CCCcEEEEECCCCcCHHHHHHHHHH
Confidence 2233210 1125678899988888888877744
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.062 Score=51.67 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=51.5
Q ss_pred ccCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCC-CCChhHHHHHHHHHHHH
Q 007511 194 SGARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPS-SLSPTRFEHWVRQRARE 272 (601)
Q Consensus 194 ~~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~-~~~~~~l~~w~~~~~~~ 272 (601)
...++.+++|+|+.|.. ++. .+..+..... ..... ...|+++|+||+||... .........|. ..
T Consensus 109 ~~~a~~~ilVydvt~~~-sf~-~~~~~~~~l~-----~~~~~---~~~piilVgNK~DL~~~r~v~~~e~~~~a----~~ 174 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRA-SFE-KASELRIQLR-----RARQT---EDIPIILVGNKSDLVRCREVSVSEGRACA----VV 174 (211)
T ss_dssp CCCCSEEEEEEETTCHH-HHH-HHHHHHHHHH-----TSGGG---TTSCEEEEEECTTCGGGCCSCHHHHHHHH----HH
T ss_pred HhhCCEEEEEEECCCHH-HHH-HHHHHHHHHH-----HHhCC---CCCcEEEEEEChHHhcCceEeHHHHHHHH----HH
Confidence 44578999999998742 222 2222222110 00000 11389999999999753 23323333332 22
Q ss_pred cCCCccceEEEEEeEeecCCccccchhh
Q 007511 273 DGISKITKLHFVSAVKNWGLKSLIDDVV 300 (601)
Q Consensus 273 ~g~~~~~~V~lvSa~kg~G~~~LL~~I~ 300 (601)
.+ ..++.+||+.+.|+.++++.+.
T Consensus 175 ~~----~~~~e~SAk~g~~v~elf~~l~ 198 (211)
T 2g3y_A 175 FD----CKFIETSAAVQHNVKELFEGIV 198 (211)
T ss_dssp HT----CEEEECBTTTTBSHHHHHHHHH
T ss_pred cC----CEEEEEeCCCCCCHHHHHHHHH
Confidence 33 2467789999999998887763
No 498
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=93.73 E-value=0.035 Score=56.27 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=19.7
Q ss_pred cEEEECCCCCchhHHHHHHhcc
Q 007511 308 NVWAIGAQNAGKSTLLNAIAKS 329 (601)
Q Consensus 308 ~v~ivG~nGaGKSTLLn~L~g~ 329 (601)
.++++|..|||||||++.+.+.
T Consensus 157 ~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCChHHHHHHHHhC
Confidence 5788999999999999999853
No 499
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.72 E-value=0.027 Score=55.98 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=50.6
Q ss_pred cCCcEEEEEEeCCCCCCCccHHHHHHHHhhhhhhhhhhhcCCCCCCCcEEEEEEcCCCCCCCCChhHHHHHHHHHHHHcC
Q 007511 195 GARSVVLMVVDAADFDGSFPRKVAKMVSDTAEENERAWKEGKSGNVPRVVLVVTKIDLLPSSLSPTRFEHWVRQRAREDG 274 (601)
Q Consensus 195 ~~~dvVv~VVDa~Df~~s~~~~i~~~l~~~~~~~~~~~~~gk~~~~~~vilViNK~DLLp~~~~~~~l~~w~~~~~~~~g 274 (601)
...|+|++|+|+.++. ....++.... ..+ .|+++|+||+|+............+ .+..|
T Consensus 82 ~~~d~ii~V~D~t~~~-----~~~~~~~~l~-------~~~-----~pvilv~NK~Dl~~~~~i~~~~~~l----~~~lg 140 (258)
T 3a1s_A 82 GDADLVILVADSVNPE-----QSLYLLLEIL-------EME-----KKVILAMTAIDEAKKTGMKIDRYEL----QKHLG 140 (258)
T ss_dssp SCCSEEEEEEETTSCH-----HHHHHHHHHH-------TTT-----CCEEEEEECHHHHHHTTCCBCHHHH----HHHHC
T ss_pred cCCCEEEEEeCCCchh-----hHHHHHHHHH-------hcC-----CCEEEEEECcCCCCccchHHHHHHH----HHHcC
Confidence 4689999999999853 1222222110 112 3899999999997432111123333 33345
Q ss_pred CCccceEEEEEeEeecCCccccchhhh
Q 007511 275 ISKITKLHFVSAVKNWGLKSLIDDVVD 301 (601)
Q Consensus 275 ~~~~~~V~lvSa~kg~G~~~LL~~I~~ 301 (601)
..++.+|+.++.|..++++.+..
T Consensus 141 ----~~vi~~SA~~g~gi~el~~~i~~ 163 (258)
T 3a1s_A 141 ----IPVVFTSSVTGEGLEELKEKIVE 163 (258)
T ss_dssp ----SCEEECCTTTCTTHHHHHHHHHH
T ss_pred ----CCEEEEEeeCCcCHHHHHHHHHH
Confidence 25788999999888888877743
No 500
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.71 E-value=0.1 Score=54.07 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=61.4
Q ss_pred ccCCcEEE-ECCCCCchhHHHHHHhccccCCCCCccccccceeEeeecCCCCCceeeeeeeccccchhhhhc-cCCCcCc
Q 007511 304 GKRGNVWA-IGAQNAGKSTLLNAIAKSVDAGRGGDGEEKNIVSHLTEAPVPGTTLGIVRVEGVLPAQAKLFD-TPGLLHP 381 (601)
Q Consensus 304 ~~~G~v~i-vG~nGaGKSTLLn~L~g~~~~~~G~i~~~~~~i~~v~qs~~pgtT~~~i~~~~~l~~~~~llD-tpGL~~~ 381 (601)
+.+|.+++ .|++|+|||||...++..... .| ..+.|+.- .++.+.+. ..++. ..|+...
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g------~~Vl~fSl----Ems~~ql~--------~Rlls~~~~v~~~ 103 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD------RGVAVFSL----EMSAEQLA--------LRALSDLTSINMH 103 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT------CEEEEEES----SSCHHHHH--------HHHHHHHHCCCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEeC----CCCHHHHH--------HHHHHHhhCCCHH
Confidence 46676555 999999999999888754322 12 12222210 01111000 01111 1122211
Q ss_pred CCccCCCCHHHHHHhcccccc--CCCEEEeccc--hHHHHHHHHHHHHHhc-CceEE
Q 007511 382 NQITTRLTREEQKLVNINKEL--KPRTYRIKAG--HSIHIAGLMRMDVEES-SVESI 433 (601)
Q Consensus 382 ~~~~~~LSgGe~qrv~iaraL--~P~lllLD~~--~~~~l~~lir~~~~~~-g~tii 433 (601)
+-....||.++.+++..|... ++++++.|.. ....+...++.+..+. +..++
T Consensus 104 ~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 104 DLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEE
Confidence 112246999999999877654 7788888654 4566777777776664 55544
Done!