BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007512
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 243 bits (620), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/256 (49%), Positives = 161/256 (62%), Gaps = 2/256 (0%)
Query: 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
NLS EEL ++ C+ LIVRS TKV DV ++A +L+VVGRAG G+DNVDL AAT G
Sbjct: 55 NLSKEELIAELQDCEGLIVRSATKVTADVI-NAAEKLQVVGRAGTGVDNVDLEAATRKGI 113
Query: 146 LXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
L R + QA AS+K GKW+R K++G L GKTL +LG
Sbjct: 114 LVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGL 173
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G++G EVA R + GM I +DP + + + GV + +E DFI++H PL P+T
Sbjct: 174 GRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPST 233
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
+ +LND TF + KKGVR++N ARGG++DE AL+RAL SG+ A AALDVFTEE PP D L
Sbjct: 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEE-PPRDRAL 292
Query: 326 VQHERVTVTPHLGAST 341
V HE V PHLGAST
Sbjct: 293 VDHENVISCPHLGAST 308
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 253/500 (50%), Gaps = 26/500 (5%)
Query: 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESS 118
P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V ++
Sbjct: 4 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AA 62
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADA 178
A +LK+V RAGVG+DNVD+ AAT G L R + ADA
Sbjct: 63 APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA 122
Query: 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI 238
S++ W+R+ + G + GKT+ V+G G++G VA+R G +V+A+DPY RA +
Sbjct: 123 SLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL 182
Query: 239 GVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298
G++L+S D+ +A ADFIS+H+P TP T+ +++ E K K GV I+N ARGG++DE AL
Sbjct: 183 GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 242
Query: 299 RALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXXXXXXXXXXXXX 358
A+ G V A LDVF E P DS L + +V VTPHLGAST
Sbjct: 243 DAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRL 301
Query: 359 XLKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRA 418
L GE AVN + V E+ P+++L KLG LA L S V +S
Sbjct: 302 ALAGEFVPDAVN--VGGGVVNEEVAPWLDLVRKLGVLAGVL----SDELPVSLSVQVRGE 355
Query: 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFI 478
+ +LR +GL + + V VNA A +RG +T E + + ESP
Sbjct: 356 LAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAE---ICKASESPNHRS 410
Query: 479 QVQIANVESKFASAISESGEIKVEGRVKDGVPHLT----KVGSFEVDVSLEGSIILCRQV 534
V + V + S ++ SG + P L+ ++ D+ +G ++ V
Sbjct: 411 VVDVRAVGAD-GSVVTVSGTLY--------GPQLSQKIVQINGRHFDLRAQGINLIIHYV 461
Query: 535 DQPGMIGTVGSILGSENVNV 554
D+PG +G +G++LG+ VN+
Sbjct: 462 DRPGALGKIGTLLGTAGVNI 481
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 237 bits (604), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 253/500 (50%), Gaps = 26/500 (5%)
Query: 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESS 118
P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V ++
Sbjct: 5 PVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVL-AA 63
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADA 178
A +LK+V RAGVG+DNVD+ AAT G L R + ADA
Sbjct: 64 APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA 123
Query: 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI 238
S++ W+R+ + G + GKT+ V+G G++G VA+R G +V+A+DPY RA +
Sbjct: 124 SLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL 183
Query: 239 GVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298
G++L+S D+ +A ADFIS+H+P TP T+ +++ E K K GV I+N ARGG++DE AL
Sbjct: 184 GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 243
Query: 299 RALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXXXXXXXXXXXXX 358
A+ G V A LDVF E P DS L + +V VTPHLGAST
Sbjct: 244 DAITGGHVRAAGLDVFATE-PCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRL 302
Query: 359 XLKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRA 418
L GE AVN + V E+ P+++L KLG LA L S V +S
Sbjct: 303 ALAGEFVPDAVN--VGGGVVNEEVAPWLDLVRKLGVLAGVL----SDELPVSLSVQVRGE 356
Query: 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFI 478
+ +LR +GL + + V VNA A +RG +T E + + ESP
Sbjct: 357 LAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERG--VTAE---ICKASESPNHRS 411
Query: 479 QVQIANVESKFASAISESGEIKVEGRVKDGVPHLT----KVGSFEVDVSLEGSIILCRQV 534
V + V + S ++ SG + P L+ ++ D+ +G ++ V
Sbjct: 412 VVDVRAVGAD-GSVVTVSGTLY--------GPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 535 DQPGMIGTVGSILGSENVNV 554
D+PG +G +G++LG+ VN+
Sbjct: 463 DRPGALGKIGTLLGTAGVNI 482
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 164/284 (57%), Gaps = 4/284 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEE--LCTKISLCDALIVRSGTKVNRDVFESS 118
VL+A L + + +L + A ++ Y P+E L + +A+IVRS KV R V ES
Sbjct: 6 VLVAAPLHEKAIQVLKD-AGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIES- 63
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADA 178
A +LKV+ RAGVG+DN+D+ AA E G R +A AD
Sbjct: 64 APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADR 123
Query: 179 SVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI 238
++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGM+++ +DPY +RA+ +
Sbjct: 124 KMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEV 183
Query: 239 GVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298
V + + +D +++H+PL +T ++N+E MKK +IN +RG V+D ALV
Sbjct: 184 NGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALV 243
Query: 299 RALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
+AL G +A A LDVF EEP P D L + + V +TPH+GAST+
Sbjct: 244 KALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 164/327 (50%), Gaps = 12/327 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCA---YNLSPEELCTKISLCDALIVRSGTKVNRDV 114
KP V I ++ + G+ +L + V+ + E L K+ DAL+ +++++V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
FE+ A +L++V VG DN+D+ AT+ G R+V
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 175 QADASVKAGKWQR-------NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ R + + ++ + +DF+ L +PLT T ++N+E MKK +IN+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXX 347
RG V+D ALV+AL G +A A LDVF EE P + +L + + V +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 348 XXXXXXXXXXXXLKGELAATAVNAPMV 374
+GE+ T VN ++
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 138/264 (52%), Gaps = 5/264 (1%)
Query: 80 NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAA 139
VD +S EEL I D ++VRS TKV +DV E +LK++ RAG+G+DN+D
Sbjct: 28 QVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKGK-KLKIIARAGIGLDNIDTEE 86
Query: 140 ATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKT 199
A + R + + A K+G ++ K G+ L GKT
Sbjct: 87 AEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKT 144
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM 259
+ ++GFG++G++V A +GM V+A+D ++A I VS +E + +D ISLH+
Sbjct: 145 IGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHV 204
Query: 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319
++ +++ F MK V I+N +R ++ +AL+ + G+V A DVF EPP
Sbjct: 205 TVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPP 264
Query: 320 PADS--KLVQHERVTVTPHLGAST 341
+ +L++HERV VT H+GA T
Sbjct: 265 KEEWELELLKHERVIVTTHIGAQT 288
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 162/327 (49%), Gaps = 12/327 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCA---YNLSPEELCTKISLCDALIVRSGTKVNRDV 114
KP V I ++ + G+ L + V+ + E L K+ DAL+ +++++V
Sbjct: 2 KPKVFITREIPEVGIKXLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTXLSERIDKEV 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
FE+ A +L++V VG DN+D+ AT+ G R+V
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 175 QADASVKAGKWQR-------NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNXRILYYS 180
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ R + + ++ + +DF+ L +PLT T ++N+E KK +IN+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILINIA 240
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXX 347
RG V+D ALV+AL G +A A LDVF EE P + +L + + V +TPH+G+++
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEE-PYYNEELFKLDNVVLTPHIGSASFGAREG 299
Query: 348 XXXXXXXXXXXXLKGELAATAVNAPMV 374
+GE+ T VN ++
Sbjct: 300 XAELVAKNLIAFKRGEIPPTLVNREVI 326
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 10/324 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
+P V + K+ + L+ L ++A+V+ S EEL I D +IV TK+ R+V E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQAD 177
A RLKV+ G DN+DL AT+ G R + AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 178 ASVKAGKWQRNKYVGV------SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231
++ G+W+ + + SL GK + +LG G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ + + + DE + +D + L +PLT T ++N+E K+ +G ++N+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL-EGKYLVNIGRGAL 239
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV-TPHLGASTMXXXXXXXX 350
+DE+A+ A+ G++ A DVF E+ P + +L ++E TV TPH +
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVF-EKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGF 298
Query: 351 XXXXXXXXXLKGELAATAVNAPMV 374
L+GE+ VN ++
Sbjct: 299 RAVENLLKVLRGEVPEDLVNKEVL 322
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 140/290 (48%), Gaps = 12/290 (4%)
Query: 60 TVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
VL+ E + Q ++ + + L +L IS + +RS T++ ++F
Sbjct: 17 NVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIF- 75
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
++A RL VG VG + V+L AA + G R +
Sbjct: 76 AAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPR 135
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
S AG W++ + GKTL ++G+G +GS+V A+ LGM V +D +D+ +
Sbjct: 136 SVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDT---SDKLQ 192
Query: 237 AIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
V S DE + T+D +SLH+P + +TSK++ + KMKKG +IN ARG +D E
Sbjct: 193 YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLE 252
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSK----LVQHERVTVTPHLGAST 341
AL + L G +A AA+DVF EP + L E V +TPH+G ST
Sbjct: 253 ALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGST 302
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 4/258 (1%)
Query: 110 VNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXX 169
V++ + +++ LKV+ VGID++ L + G
Sbjct: 65 VDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 124
Query: 170 XRNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 125 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 184
Query: 227 DPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
P + A + VS E A +DFI + LTPAT + N + F KMK+ IN
Sbjct: 185 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFIN 244
Query: 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXX 345
++RG V++++ L +AL SG++A A LDV + EP P + L+ + + PH+G++T
Sbjct: 245 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTR 304
Query: 346 XXXXXXXXXXXXXXLKGE 363
L+GE
Sbjct: 305 NTMSLLAANNLLAGLRGE 322
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 4/258 (1%)
Query: 110 VNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXX 169
V++ + +++ LKV+ VGID++ L + G
Sbjct: 63 VDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 122
Query: 170 XRNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 123 CRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLY 182
Query: 227 DPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
P + A + VS E A +DFI + LTPAT + N + F K K+ IN
Sbjct: 183 TGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFIN 242
Query: 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXX 345
++RG V++++ L +AL SG++A A LDV + EP P + L+ + + PH+G++T
Sbjct: 243 ISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTR 302
Query: 346 XXXXXXXXXXXXXXLKGE 363
L+GE
Sbjct: 303 NTXSLLAANNLLAGLRGE 320
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 132/286 (46%), Gaps = 13/286 (4%)
Query: 61 VLIAEKLGQAGLDLLNEFA---NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
VL+ L LD L E V L EL ++ LI +++ +V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQAD 177
+ G LKV+ VG+D+VDL AA E G R V +
Sbjct: 63 AKG-LKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 178 ASVKAG---KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
A + G W +G+ L G TL ++G G++G VA+RA GM V+ H A
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYH-----ART 176
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ + +S +E + AD +SLH PLTP T ++LN E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAS 340
EALV AL G + A LDV EP P L +TPH+G++
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSA 281
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 10/291 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K L+ E + Q L+ L + ++ L E+L I + +RS T + DV
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
++A +L +G +G + VDL AA + G R V
Sbjct: 70 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
+A+A G W + GK L ++G+G +G+++ A+ LGM+V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
A V +S + + +D +SLH+P P+T ++ + MK G +IN +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 295 EALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGAST 341
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST 297
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 10/291 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K L+ E + Q L+ L + ++ L E+L I + +RS T + DV
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
++A +L +G +G + VDL AA + G R V
Sbjct: 70 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
+A+A G W + GK L ++G+G +G+++ A+ LGM+V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 188
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
A V +S + + +D +SLH+P P+T ++ + MK G +IN +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 246
Query: 295 EALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGAST 341
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST
Sbjct: 247 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST 297
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 108/224 (48%), Gaps = 9/224 (4%)
Query: 122 LKVVGRAGVGIDNVDLAAATEFG-CLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASV 180
L+V+ R G G DNVD+ AA E G + RN A
Sbjct: 70 LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 129
Query: 181 KAGKWQRNKYV------GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
+ + Q + + + G+TL ++GFG+ G VA RAK G VI +DPY
Sbjct: 130 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGI 189
Query: 235 ARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
R++GV V + + + +D +SLH L ++ND T +M++G ++N ARGG++D
Sbjct: 190 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVD 249
Query: 294 EEALVRALDSGRVAQAALDVFTEEP-PPADSKLVQHERVTVTPH 336
E+AL +AL GR+ AALDV EP A L + TPH
Sbjct: 250 EKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPH 293
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 134/291 (46%), Gaps = 10/291 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K L+ E + Q L+ L + ++ L E+L I + +RS T + DV
Sbjct: 9 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 68
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
++A +L +G +G + VDL AA + G R V
Sbjct: 69 I-NAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 127
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
+A+A G W + GK L ++G+G +G+++ A+ LGM+V +D
Sbjct: 128 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL 187
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
A V +S + + +D +SLH+P P+T ++ + MK G +IN +RG V+D
Sbjct: 188 GNATQVQHLS--DLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 245
Query: 295 EALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGAST 341
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST
Sbjct: 246 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGST 296
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 10/226 (4%)
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
AL+ + T D+ + A L+++ R G G DN+D+ +A + G
Sbjct: 70 ALMYHTITLTREDLEKFKA--LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 127
Query: 161 XXXXXXXXXXRNVAQADASVKAG------KWQRNKYVGVSLV-GKTLAVLGFGKVGSEVA 213
R +++ G + R G + + G+TL ++G G+VG VA
Sbjct: 128 STLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA 187
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 188 LRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 247
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP
Sbjct: 248 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 118/245 (48%), Gaps = 11/245 (4%)
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
AL+ + T D+ + A L+++ R G G DN+D+ +A + G
Sbjct: 67 ALMYHTITLTREDLEKFKA--LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 124
Query: 161 XXXXXXXXXXRNVAQADASVKAG------KWQRNKYVGVSLV-GKTLAVLGFGKVGSEVA 213
R +++ G + R G + + G+TL ++G G+VG VA
Sbjct: 125 STLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA 184
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 185 LRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 244
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP-PPADSKLVQHERV 331
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP + L +
Sbjct: 245 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304
Query: 332 TVTPH 336
TPH
Sbjct: 305 ICTPH 309
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 10/226 (4%)
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
AL+ + T D+ + A L+++ R G G DN+D+ +A + G
Sbjct: 70 ALMYHTITLTREDLEKFKA--LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 127
Query: 161 XXXXXXXXXXRNVAQADASVKAG------KWQRNKYVGVSLV-GKTLAVLGFGKVGSEVA 213
R +++ G + R G + + G+TL ++G G+VG VA
Sbjct: 128 STLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA 187
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 188 LRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 247
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP
Sbjct: 248 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 140/326 (42%), Gaps = 16/326 (4%)
Query: 59 PTVLIAEKLGQAGLDLL---NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P ++I ++ + L LL E L+ EE+ + A++ +V+ D F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQ 175
+ L+V+G A G DN D+ A T G R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 176 ADASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++GK WQ ++ G L T+ LG G +G +A R +G G + H+ A
Sbjct: 122 ADAFVRSGKFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMXX 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 XXXXXXXXXXXXXXXLKGELAATAVN 370
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 140/326 (42%), Gaps = 16/326 (4%)
Query: 59 PTVLIAEKLGQAGLDLL---NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P ++I ++ + L LL E L+ EE+ + A++ +V+ D F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQ 175
+ L+V+G A G DN D+ A T G R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 176 ADASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++GK WQ ++ G L T+ LG G +G +A R +G G + H+ A
Sbjct: 122 ADAFVRSGKFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMXX 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 XXXXXXXXXXXXXXXLKGELAATAVN 370
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 10/226 (4%)
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
AL+ + T D+ + A L+++ R G G DN+D+ +A + G
Sbjct: 70 ALMYHTITLTREDLEKFKA--LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 127
Query: 161 XXXXXXXXXXRNVAQADASVKAG------KWQRNKYVGVSLV-GKTLAVLGFGKVGSEVA 213
R +++ G + R G + + G+TL ++G +VG VA
Sbjct: 128 STLCHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA 187
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 188 LRAKAFGFNVLFYDPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 247
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP
Sbjct: 248 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEP 293
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 16/326 (4%)
Query: 59 PTVLIAEKLGQAGLDLL---NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P ++I ++ + L LL E L+ EE+ + A++ +V+ D F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQ 175
+ L+V+G A G DN D+ A T G R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 176 ADASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++G+ WQ ++ G L T+ LG G +G +A R +G G + H A
Sbjct: 122 ADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMXX 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 XXXXXXXXXXXXXXXLKGELAATAVN 370
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 16/326 (4%)
Query: 59 PTVLIAEKLGQAGLDLL---NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P ++I ++ + L LL E L+ EE+ + A++ +V+ D F
Sbjct: 3 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDAD-F 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQ 175
+ L+V+G A G DN D+ A T G R++
Sbjct: 62 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 121
Query: 176 ADASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++G+ WQ ++ G L T+ LG G +G +A R +G G + H A
Sbjct: 122 ADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMXX 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 XXXXXXXXXXXXXXXLKGELAATAVN 370
L GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVN 326
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 130/292 (44%), Gaps = 10/292 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K L+ E + Q L+ L + ++ L E+L I + +RS T + DV
Sbjct: 10 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 69
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
++A +L +G +G + VDL AA + G R V
Sbjct: 70 I-NAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 128
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
+A+A G W + GK L ++G+G +G+++ A+ LG +V +D
Sbjct: 129 EANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKLPL 188
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
A V +S + + +D +SLH+P P+T + K G +IN +RG V+D
Sbjct: 189 GNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVVDI 246
Query: 295 EALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGASTM 342
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST
Sbjct: 247 PALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQ 298
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 126/292 (43%), Gaps = 11/292 (3%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSP----EELCTKISLCDALIVRSGTKVNRD 113
K +LI L +A + E +V A+ P +E+ DAL++ K ++
Sbjct: 1 KKKILITWPLPEAAMARARESYDV-IAHGDDPKITIDEMIETAKSVDALLITLNEKCRKE 59
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNV 173
V + +K + +G D++DL A G R
Sbjct: 60 VIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRA 119
Query: 174 AQADASVKAGKW---QRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY- 229
+ + ++ W + + VG L KTL + GFG +G +A+RA+G M + D +
Sbjct: 120 GEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR 179
Query: 230 -APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288
+ +D A S D ++ + F SL+ P TP T N T + +G ++N AR
Sbjct: 180 ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTAR 239
Query: 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAS 340
G ++D E +V AL++GR+A A DVF E P + + PH+G++
Sbjct: 240 GDLVDNELVVAALEAGRLAYAGFDVFAGE-PNINEGYYDLPNTFLFPHIGSA 290
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 18/264 (6%)
Query: 91 ELCTKISLCDALI-VRSGTKVNRDVFESSAGRLKVVGRAG-VGID---NVDLAAATEFGC 145
+L +++ +AL+ +R T+V R + + +LK++ + G V D ++DL A T+ G
Sbjct: 41 QLAARVADVEALVLIRERTRVTRQLLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGV 99
Query: 146 LXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQR----------NKYVGVSL 195
+ R + Q AS+K G WQ+ N +G L
Sbjct: 100 VVLEGKGSPVAPAELTWALVMAAQ-RRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVL 158
Query: 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADF 254
G+TL + G+GK+G VA + GM+V+ +RARA G + S D +D
Sbjct: 159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDV 218
Query: 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVF 314
+S+H+ L T ++ +MK +N +R +++E +V AL+ GR AA+DVF
Sbjct: 219 LSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVF 278
Query: 315 TEEPPPADSKLVQHERVTVTPHLG 338
EP L++ E TPH+G
Sbjct: 279 ETEPILQGHTLLRMENCICTPHIG 302
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 136/326 (41%), Gaps = 16/326 (4%)
Query: 59 PTVLIAEKLGQAGLDLL---NEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
P ++I ++ + L LL E L+ EE+ + A +V+ D F
Sbjct: 4 PKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAXXAFXPDRVDAD-F 62
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQ 175
+ L+V+G A G DN D+ A T G R++
Sbjct: 63 LQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRA 122
Query: 176 ADASVKAGK---WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++G+ WQ ++ G L T+ LG G +G A R +G G + H A
Sbjct: 123 ADAFVRSGQFRGWQ-PRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAKALD 181
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 182 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 241
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMXX 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 242 VDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 301
Query: 345 XXXXXXXXXXXXXXXLKGELAATAVN 370
L GE AVN
Sbjct: 302 RLEIERCAAQNILQALAGERPINAVN 327
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 4/258 (1%)
Query: 87 LSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCL 146
L+P + ++ + L V + + +V LK + VG D++D AAA G
Sbjct: 60 LTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIK 119
Query: 147 XXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQR---NKYVGVSLVGKTLAVL 203
R +AD V++G W + +G L G+ L +
Sbjct: 120 VLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIF 179
Query: 204 GFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP 263
G G++G +A RA+G G+ + H+ + + + D + +D + P P
Sbjct: 180 GXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRP 239
Query: 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323
L+ + K+ +G +IN++RG +I+++AL+ AL S + A LDVF E P D
Sbjct: 240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANE-PAIDP 298
Query: 324 KLVQHERVTVTPHLGAST 341
+ + + +TPH+G++T
Sbjct: 299 RYRSLDNIFLTPHIGSAT 316
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 4/240 (1%)
Query: 128 AGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQR 187
AG+G D++DL AA G RN V G+W
Sbjct: 99 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 158
Query: 188 N--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV- 243
Y L GKT+ +G G++G + +R K G +++ HD A + + G V
Sbjct: 159 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 218
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
+E + D I ++MPLT T + N E GK+KKGV I+N ARG +++ +A+V A++S
Sbjct: 219 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 278
Query: 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXXXXXXXXXXXXXXLKGE 363
G + + DV+ +P P D +TPH +T+ KGE
Sbjct: 279 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGE 338
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 104/240 (43%), Gaps = 4/240 (1%)
Query: 128 AGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQR 187
AG+G D++DL AA G RN V G+W
Sbjct: 93 AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 152
Query: 188 N--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV- 243
Y L GKT+ +G G++G + +R K G +++ HD A + + G V
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVE 212
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
+E + D I ++MPLT T + N E GK+KKGV I+N ARG +++ +A+V A++S
Sbjct: 213 DLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES 272
Query: 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXXXXXXXXXXXXXXLKGE 363
G + + DV+ +P P D +TPH +T+ KGE
Sbjct: 273 GHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGE 332
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 33/309 (10%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDAL--------------I 103
+P VL+ LG L + +++ + + P L T AL
Sbjct: 3 RPRVLL---LGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLA 59
Query: 104 VRSGTK---VNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
V +GT+ N D+ LKV AG G D +DL A E G
Sbjct: 60 VENGTESYPWNADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSD 119
Query: 161 XXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSL-------VGKTLAVLGFGKVGSEVA 213
R + ++ + + G + V + + G L +G G + E+A
Sbjct: 120 LALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIA 179
Query: 214 RRA-KGLGMHVIAHDPYAPAD--RARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269
R+A GLGM ++ +D APAD +A+G + V S +E +D +S+ +P T ++
Sbjct: 180 RKAVHGLGMKLVYYD-VAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI 238
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
++ F MK G RI+N ARG VI ++AL+ AL SG++ A LDV E P +L++ +
Sbjct: 239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE-PQVSKELIEMK 297
Query: 330 RVTVTPHLG 338
VT+T H+G
Sbjct: 298 HVTLTTHIG 306
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 17/243 (6%)
Query: 114 VFES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRN 172
VFE A +K + VG DN+D+ A ++G RN
Sbjct: 60 VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRN 119
Query: 173 VAQADASVKAGKWQR-NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231
+ + A ++AG +++ ++G L +T+ V+G G +G + KG G VIA+DPY
Sbjct: 120 MGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM 179
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ D VS ++ +D I LH+P + ++N+ F MK G +IN AR +
Sbjct: 180 --KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNL 237
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPP-------------PADSKLVQHERVTVTPHLG 338
ID +A++ L SG++A +D + E P +L+ V ++PH+
Sbjct: 238 IDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 297
Query: 339 AST 341
T
Sbjct: 298 YYT 300
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 33/309 (10%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDAL--------------I 103
+P VL+ LG L + +++ + + P L T AL
Sbjct: 3 RPRVLL---LGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLA 59
Query: 104 VRSGTK---VNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
V +GT+ N D+ LKV AG G D +DL A E G
Sbjct: 60 VENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSD 119
Query: 161 XXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSL-------VGKTLAVLGFGKVGSEVA 213
R + ++ + + G + V + + G L +G G + E+A
Sbjct: 120 LALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIA 179
Query: 214 RRA-KGLGMHVIAHDPYAPAD--RARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269
R+A GLGM ++ +D APAD +A+G + V S +E +D +S+ +P T ++
Sbjct: 180 RKAVHGLGMKLVYYD-VAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI 238
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
++ F MK G RI+N ARG VI ++AL+ AL SG++ A LDV E P +L++ +
Sbjct: 239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE-PQVSKELIEMK 297
Query: 330 RVTVTPHLG 338
VT+T H+G
Sbjct: 298 HVTLTTHIG 306
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 133/294 (45%), Gaps = 14/294 (4%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K L+ E + Q L+ L + ++ L E+L I + +RS T + DV
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVA 174
++A +L +G +G + VDL AA + G R V
Sbjct: 64 I-NAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 175 QADASVKAGKWQRNKYVGVSLV--GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
+A+A KA + NK S GK L ++G+G +G+++ A+ LG +V +D
Sbjct: 123 EANA--KAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIENKL 180
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
A V +S + + +D +SLH+P P+T + K G +IN +RG V+
Sbjct: 181 PLGNATQVQHLS--DLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTVV 238
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGASTM 342
D AL AL S +A AA+DVF EP P S L + + V +TPH+G ST
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQ 292
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 138/309 (44%), Gaps = 33/309 (10%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDAL--------------I 103
+P VL+ LG L + +++ + + P L T AL
Sbjct: 3 RPRVLL---LGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLA 59
Query: 104 VRSGTK---VNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXX 160
V +GT+ N D+ LKV AG G D +DL A E G
Sbjct: 60 VENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSD 119
Query: 161 XXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSL-------VGKTLAVLGFGKVGSEVA 213
R + ++ + + G + V + + G L +G G + E+A
Sbjct: 120 LALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIA 179
Query: 214 RRA-KGLGMHVIAHDPYAPAD--RARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269
R+A GLGM ++ +D APAD +A+G + V S +E +D +S+ +P T ++
Sbjct: 180 RKAVHGLGMKLVYYD-VAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLI 238
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
++ F MK G RI+N ARG VI ++AL+ AL SG++ A LDV E P +L++ +
Sbjct: 239 DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE-PNVSKELIEMK 297
Query: 330 RVTVTPHLG 338
VT+T H+G
Sbjct: 298 HVTLTTHIG 306
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 101/227 (44%), Gaps = 16/227 (7%)
Query: 129 GVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN 188
VG+DN+D+A A E G R D V +
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-APADRARAIGVDLVSFDE 247
+G + + + V+G G +G + +G G VI +D + P + VD S D+
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVD--SLDD 195
Query: 248 AIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
AD ISLH+P PA ++NDE+ KMK+ V I+NV+RG ++D +A++R LDSG++
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255
Query: 308 QAALDVFTEE-------------PPPADSKLVQHERVTVTPHLGAST 341
A+DV+ E P + L+ V VTPH T
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYT 302
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 127/292 (43%), Gaps = 29/292 (9%)
Query: 74 LLNEFA----NVDCAYN---LSPEELCTKISL-CDALIVRSGTKVNRDVFES--SAGRLK 123
LNE+ ++D Y L+PE K++ D ++V D ++ AG K
Sbjct: 16 FLNEWKEAHKDIDVDYTDKLLTPE--TAKLAKGADGVVVYQQLDYTADTLQALADAGVTK 73
Query: 124 VVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAG 183
+ R VG+DN+D+ A E G R + D +
Sbjct: 74 MSLR-NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKR 132
Query: 184 KWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL 242
+ +G + + + V+G G +G R +G G VIA+D + P + VD
Sbjct: 133 DLRWAPTIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVD- 191
Query: 243 VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALD 302
S D+ AD ISLH+P PA ++ND++ +MK GV I+N +RG ++D +A++R LD
Sbjct: 192 -SLDDLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLD 250
Query: 303 SGRVAQAALDVFTEE-------------PPPADSKLVQHERVTVTPHLGAST 341
SG++ +D + +E P + L+ V VTPH T
Sbjct: 251 SGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYT 302
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 3/190 (1%)
Query: 129 GVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRN 188
VG+DN+D+A A E G R D V +
Sbjct: 78 NVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA 137
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-APADRARAIGVDLVSFDE 247
+G + + + V+G G +G + +G G VI +D + P + VD S D+
Sbjct: 138 PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVD--SLDD 195
Query: 248 AIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
AD ISLH+P PA ++NDE+ KMK+ V I+NV+RG ++D +A++R LDSG++
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255
Query: 308 QAALDVFTEE 317
A+DV+ E
Sbjct: 256 GYAMDVYEGE 265
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 103/241 (42%), Gaps = 17/241 (7%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
S RLK++ VG D++DL + G L + + +
Sbjct: 60 SKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRI 119
Query: 177 DASVKAGKW-QRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
+ VK + Q ++ + L TL V+G G++GS VA G V+ +D D
Sbjct: 120 EDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRED-L 178
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
+ G S DE + +D ISLH+P T T +N+E K GV +IN ARG V+D +
Sbjct: 179 KEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTARGKVVDTD 238
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQ---------------HERVTVTPHLGAS 340
AL RA G+ + LDVF +E K + + V +TPH+
Sbjct: 239 ALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYY 298
Query: 341 T 341
T
Sbjct: 299 T 299
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATA 252
+L G+ L + G G++G +A +A LGMHVI + PAD V + +A+ATA
Sbjct: 134 TLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHET-VAFTATADALATA 192
Query: 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312
+FI +PLTP T + + E F + K+ +IN+ RG +D AL+ ALD +++ AALD
Sbjct: 193 NFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALD 252
Query: 313 VFTEEPPPADSKLVQHERVTVTPHL 337
V EP P D L Q + V +TPH+
Sbjct: 253 VTEPEPLPTDHPLWQRDDVLITPHI 277
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 83/162 (51%), Gaps = 10/162 (6%)
Query: 185 WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV- 243
WQ + Y G L G+TL +LG G +G +A K GM V+ + + R RA G D V
Sbjct: 130 WQSHPYQG--LKGRTLLILGTGSIGQHIAHTGKHFGMKVLG---VSRSGRERA-GFDQVY 183
Query: 244 ---SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+ ++ +A AD I +P T T + F K G + NV RG I+E L+ A
Sbjct: 184 QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTA 243
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
L +G++ A LDVF +EP PADS L + +TPH A +
Sbjct: 244 LRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSF 285
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 13/227 (5%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASV 180
+L++V VG+D VDL E G R + + D V
Sbjct: 87 KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146
Query: 181 KAGKWQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
+ G W+ + + GK + ++G G++G VA RA+ P + R++
Sbjct: 147 RRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDC------PISYFSRSKKPN 200
Query: 240 VDLVSFDEAI---ATADFISLHMPLTPATSKVLNDETFGKM-KKGVRIINVARGGVIDEE 295
+ + + + +D + + PLTP T+ ++N E + KGV +IN+ RG +DE
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGV-LINIGRGPHVDEP 259
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
LV AL GR+ A LDVF E P KL E V + PH+G+ T+
Sbjct: 260 ELVSALVEGRLGGAGLDVFERE-PEVPEKLFGLENVVLLPHVGSGTV 305
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 4/230 (1%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
+ A +LK+ AG+G D+VDL AA + RN +
Sbjct: 110 AKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPS 169
Query: 177 DASVKAGKWQRNKYVGVS--LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
+ G W V S + G + + G++G V R MH+ D + P
Sbjct: 170 HDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEA 229
Query: 234 RARAIGVDLVSFDEAIATA-DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + + + E + A D ++L+ PL P T ++NDET K+G ++N ARG +
Sbjct: 230 VEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLC 289
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
D +A+VRAL+SGR+A A DV+ +P P D +TPH+ +++
Sbjct: 290 DRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSL 339
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 104/230 (45%), Gaps = 4/230 (1%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
+ A +LK+ AG+G D+VDL AA + RN +
Sbjct: 109 AKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPS 168
Query: 177 DASVKAGKWQRNKYVGVS--LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
+ G W V S + G + + G++G V R MH+ D + P
Sbjct: 169 HDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHRLPEA 228
Query: 234 RARAIGVDLVSFDEAIATA-DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + + + E + A D ++L+ PL P T ++NDET K+G ++N ARG +
Sbjct: 229 VEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTARGKLC 288
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
D +A+VRAL+SGR+A A DV+ +P P D +TPH+ +++
Sbjct: 289 DRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSL 338
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 4/230 (1%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
+ A LK+ AG+G D+VDL +A + RN +
Sbjct: 110 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 169
Query: 177 DASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
+ G W V L + + G++G V RR +H+ D + P
Sbjct: 170 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 229
Query: 234 RARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + + + ++ D ++L+ PL P T ++NDET K+G I+N ARG +
Sbjct: 230 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 289
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
D +A+ RAL+SGR+A A DV+ +P P D +TPH+ +T+
Sbjct: 290 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 339
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 4/230 (1%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
+ A LK+ AG+G D+VDL +A + RN +
Sbjct: 109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 168
Query: 177 DASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
+ G W V L + + G++G V RR +H+ D + P
Sbjct: 169 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 228
Query: 234 RARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + + + ++ D ++L+ PL P T ++NDET K+G I+N ARG +
Sbjct: 229 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 288
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
D +A+ RAL+SGR+A A DV+ +P P D +TPH+ +T+
Sbjct: 289 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 100/230 (43%), Gaps = 4/230 (1%)
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
+ A LK+ AG+G D+VDL +A + RN +
Sbjct: 110 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS 169
Query: 177 DASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PAD 233
+ G W V L + + G++G V RR +H+ D + P
Sbjct: 170 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES 229
Query: 234 RARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+ + + + ++ D ++L+ PL P T ++NDET K+G I+N ARG +
Sbjct: 230 VEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC 289
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342
D +A+ RAL+SGR+A A DV+ +P P D +TPH+ +T+
Sbjct: 290 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 339
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 18/166 (10%)
Query: 185 WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD-PYAPADRARAIGVDLV 243
W N + + T+ ++G G +GS VA +G VIA+D Y P D
Sbjct: 137 WPSN-LISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTD-- 193
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
FD + AD +SLH PL P+T ++ ++ +MKK +IN ARG ++D AL++AL
Sbjct: 194 -FDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD 252
Query: 304 GRVAQAALDV------------FTEEPPPADSK-LVQHERVTVTPH 336
G +A A LD T+ P D K L + V +TPH
Sbjct: 253 GEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPH 298
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 109/254 (42%), Gaps = 12/254 (4%)
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQADASVK 181
L ++ GVG D VDLA A R V D V+
Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVR 153
Query: 182 AGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
G+W + + G S GK + VLG G++G +A RA+ G V + R+ G
Sbjct: 154 EGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWN------RSTLSG 207
Query: 240 VDLVSFDEAIATA---DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
VD ++ + A D +++ + + AT +++ + ++NVARG V+DE+A
Sbjct: 208 VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDA 267
Query: 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMXXXXXXXXXXXXXX 356
L+ AL SG +A A LDVF E P S+ + PH G++T+
Sbjct: 268 LIEALKSGTIAGAGLDVFVNE-PAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANL 326
Query: 357 XXXLKGELAATAVN 370
GE A VN
Sbjct: 327 AAHFAGEKAPNTVN 340
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 109/260 (41%), Gaps = 22/260 (8%)
Query: 100 DALIVRSG---TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXX 156
DA+I+R K N D+++ +K + G D++D A E G
Sbjct: 47 DAVILRGNCFANKQNLDIYKKLG--VKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPN 104
Query: 157 XXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGK-TLAVLGFGKVGSEVARR 215
R+ A + ++ + ++ V T+ V+G G++G A+
Sbjct: 105 AIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQI 164
Query: 216 AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275
G+G VI D + + VS DE + +D I++H P V+ +
Sbjct: 165 FHGMGATVIGEDVFEI--KGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLK 222
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP-------------PAD 322
KMK G ++N ARG ++D EA++ A++SG++ DV E P
Sbjct: 223 KMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLF 282
Query: 323 SKLVQ-HERVTVTPHLGAST 341
KLV + RV +TPHLG+ T
Sbjct: 283 EKLVDLYPRVLITPHLGSYT 302
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 109/253 (43%), Gaps = 31/253 (12%)
Query: 95 KISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXX 154
+++ DAL VRS TKVN + + + VG A G D+VD A + G
Sbjct: 37 ELNHADALXVRSVTKVNESLLSGTP--INFVGTATAGTDHVDEAWLKQAGI----GFSAA 90
Query: 155 XXXXXXXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214
+A+ D G SL +T+ ++G G VGS +
Sbjct: 91 PGCNAIAVVEYVFSALLXLAERD--------------GFSLRDRTIGIVGVGNVGSRLQT 136
Query: 215 RAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLT---PATSKVLND 271
R + LG+ + DP AR D + DE + AD ++ H PL P + L D
Sbjct: 137 RLEALGIRTLLCDP---PRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193
Query: 272 ETF-GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330
ET ++K G +IN RG V+D AL+ L++G+ LDV+ EP D + E
Sbjct: 194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP---DLNVALLEA 250
Query: 331 VTV-TPHLGASTM 342
V + T H+ T+
Sbjct: 251 VDIGTSHIAGYTL 263
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 18/239 (7%)
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFG--CLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
A +LK+V AGVG D++DL + G RN A
Sbjct: 83 AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPA 142
Query: 177 DASVKAGKWQ-----RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA- 230
+ W+ ++ Y + GKT+A +G G++G V R + + Y
Sbjct: 143 HEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQA 199
Query: 231 -PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288
P D +G V + +E +A AD ++++ PL T ++N E K KKG ++N AR
Sbjct: 200 LPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTAR 259
Query: 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERV-----TVTPHLGASTM 342
G + E + AL+SG++ DV+ +P P D +TPH +T+
Sbjct: 260 GAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 318
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 100/239 (41%), Gaps = 18/239 (7%)
Query: 119 AGRLKVVGRAGVGIDNVDLAAATEFG--CLXXXXXXXXXXXXXXXXXXXXXXXXRNVAQA 176
A +LK+V AGVG D++DL + G RN A
Sbjct: 82 AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPA 141
Query: 177 DASVKAGKWQ-----RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA- 230
+ W+ ++ Y + GKT+A +G G++G V R + + Y
Sbjct: 142 HEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQA 198
Query: 231 -PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288
P D +G V + +E +A AD ++++ PL T ++N E K KKG ++N AR
Sbjct: 199 LPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTAR 258
Query: 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERV-----TVTPHLGASTM 342
G + E + AL+SG++ DV+ +P P D +TPH +T+
Sbjct: 259 GAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 317
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%)
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
+P T T ++N E ++ G ++N+ARG + E L+ ALDSG++ A LDVF++EP
Sbjct: 201 LPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP 260
Query: 319 PPADSKLVQHERVTVTPHLGAST 341
P +S L +H RV TPH+ A T
Sbjct: 261 LPQESPLWRHPRVAXTPHIAAVT 283
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 171 RNVAQADASVKAGK--WQRNKYVGVSLV-GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
R + AD + + G W L+ G + ++GFG +G + R G + D
Sbjct: 147 RGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFD 206
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
P+ P GV+ S ++ + +DFI + +T + L E F ++G I ++
Sbjct: 207 PWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSXRRGAAFILLS 266
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD 322
R V+D +AL A+ SG + AA DV+ EEP P D
Sbjct: 267 RADVVDFDALXAAVSSGHIV-AASDVYPEEPLPLD 300
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 109/247 (44%), Gaps = 29/247 (11%)
Query: 100 DALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLXXXXXXXXXXXXX 159
D L+VRS T+V+R S ++ VG +G D++DL E G
Sbjct: 39 DVLLVRSVTEVSRAALAGSP--VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVV 96
Query: 160 XXXXXXXXXXXRNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL 219
A A V+ G L +T V+G G+VG + +GL
Sbjct: 97 DYVL--------GCLLAMAEVR----------GADLAERTYGVVGAGQVGGRLVEVLRGL 138
Query: 220 GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLT----PATSKVLNDETFG 275
G V+ DP +AR + VS + +A AD ISLH PL T +L++
Sbjct: 139 GWKVLVCDP---PRQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLA 195
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTP 335
++ G ++N +RG V+D +AL R L+ G + ALDV+ E P AD +L + TP
Sbjct: 196 ALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE-PQADPELAARC-LIATP 253
Query: 336 HLGASTM 342
H+ ++
Sbjct: 254 HIAGYSL 260
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 12/170 (7%)
Query: 171 RNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230
+N+ + + KAG ++++ L GK L +LG+G +G VA AK G VIA+ +
Sbjct: 98 KNILENNELXKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAY-TRS 154
Query: 231 PADRARAIGVDLVSFDEA--IATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288
D+ VD++S A +DF+ + +PLT T +N +K + I+NVAR
Sbjct: 155 SVDQ----NVDVISESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVAR 210
Query: 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG 338
V+ + + L DV+ EP ++ L ++PH+
Sbjct: 211 ADVVSKPDXIGFLKERSDVWYLSDVWWNEPEITETNL---RNAILSPHVA 257
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGVDLVSFDEAIATADF 254
GK + + G+G VG A KGLG +++ DP A +A G ++V+ DE + DF
Sbjct: 257 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC-AIQAVMEGFNVVTLDEIVDKGDF 315
Query: 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
V+ E KMK + N+ G D+E V L
Sbjct: 316 ----FITCTGNVDVIKLEHLLKMKNNAVVGNI---GHFDDEIQVNEL 355
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ G G + V DP A +A G ++V+ D+A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
TAD + T V+ + KMK + N+ G D E V AL
Sbjct: 302 TADIVV----TTTGNKDVITIDHMRKMKDMCIVGNI---GHFDNEIQVAAL 345
>pdb|1XQ5|A Chain A, Met-Perch Hemoglobin At 1.9a
pdb|1XQ5|C Chain C, Met-Perch Hemoglobin At 1.9a
Length = 143
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 232 ADRARAIGVDLVSFDEAIA--TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
AD+A IG D +S A+ T + S L+P ++ V K G I+ G
Sbjct: 19 ADKAEEIGSDALSRMLAVYPQTKTYFSHWKDLSPGSAPV--------NKHGKTIM----G 66
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH 328
G++D A + L++G +A + L FT PA+ K++ H
Sbjct: 67 GIVDAVASIDDLNAGLLALSELHAFTLRVDPANFKILSH 105
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 171 RNVAQADASVKAGKWQRNKYVGVSLV-GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
+ + Q K G + R+ V + L+ G+ +AVLG G++G+ V + LG V
Sbjct: 99 KRIIQYGEKXKRGDYGRD--VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 156
Query: 230 APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
R S +EA+ A +PL T ++ + + +NV R
Sbjct: 157 PKEGPWRFTN----SLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRA 212
Query: 290 GVIDEEALVRAL 301
V+D + ++R L
Sbjct: 213 EVLDRDGVLRIL 224
>pdb|3BJ1|A Chain A, Met-Perch Hemoglobin At Ph 5.7
pdb|3BJ1|C Chain C, Met-Perch Hemoglobin At Ph 5.7
pdb|3BJ2|A Chain A, Met-Perch Hemoglobin At Ph 6.3
pdb|3BJ2|C Chain C, Met-Perch Hemoglobin At Ph 6.3
pdb|3BJ3|A Chain A, Met-Perch Hemoglobin At Ph 8.0
pdb|3BJ3|C Chain C, Met-Perch Hemoglobin At Ph 8.0
Length = 142
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 232 ADRARAIGVDLVSFDEAI--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
AD+A IG D + A+ T + S L+P ++ V K G I+ G
Sbjct: 18 ADKAEEIGADALGRMLAVYPQTKTYFSHWKDLSPGSAPV--------NKHGKTIM----G 65
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH 328
G++D A + L++G +A + L FT PA+ K++ H
Sbjct: 66 GLVDAVASIDDLNAGLLALSELHAFTLRVDPANFKILSH 104
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGVDLVSFDEAIATADF 254
GK + + G+G VG A KG G + V DP A +A G D+V+ +EAI AD
Sbjct: 274 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPIN-ALQAMMEGFDVVTVEEAIGDADI 332
Query: 255 I 255
+
Sbjct: 333 V 333
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGVDLVSFDEAIATADF 254
GK + + G+G VG A KG G + V DP A +A G D+V+ +EAI AD
Sbjct: 275 GKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPIN-ALQAMMEGFDVVTVEEAIGDADI 333
Query: 255 I 255
+
Sbjct: 334 V 334
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI DP A +A G ++ + DEA
Sbjct: 209 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 267
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F +MK + N+ G D E V+ L+ V +
Sbjct: 268 EGNIFVT-----TTGCIDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 318
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI DP A +A G ++ + DEA
Sbjct: 212 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACQ 270
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F +MK + N+ G D E V+ L+ V +
Sbjct: 271 EGNIFVT-----TTGCIDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 321
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI DP A +A G ++ + DEA
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACK 266
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 173 VAQADASVKAGKW---QRNKYVGVSLVGKTLAVLGFGKVGSEVAR-RAKGLGMHVIA 225
VA+ DA+ + + + K +G+ L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 184 VARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVA 240
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI DP A +A G ++ + DEA
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAMEGYEVTTMDEACK 266
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGVDLVSFDEAIATADF 254
GK + V G+G+VG K +G ++V DP A +A G LV +E I D
Sbjct: 220 GKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIRQVDI 278
Query: 255 ISLHMPLTPATSK-VLNDETFGKMKKGVRIINVAR 288
+ +T +K V+ E +MK + N+
Sbjct: 279 V-----ITCTGNKNVVTREHLDRMKNSCIVCNMGH 308
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI--GVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI + P + +A G ++ + DEA
Sbjct: 208 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE-IEPINALQAAMEGYEVTTMDEACK 266
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F +MK + N+ G D E V+ L+ V +
Sbjct: 267 EGNIFVT-----TTGCVDIILGRHFEQMKDDAIVCNI---GHFDVEIDVKWLNENAVEK 317
>pdb|1VNF|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant R360a
Length = 609
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>pdb|1VNE|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant D292a
Length = 609
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|1IDQ|A Chain A, Crystal Structure Of Native Vanadium-Containing
Chloroperoxidase From Curvularia Inaequalis
pdb|1VNC|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis
pdb|1VNI|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Recombinant Holo-Chloroperoxidase
pdb|1VNS|A Chain A, Recombinant Apo-chloroperoxidase From Curvularia
Inaequalis
Length = 609
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|1VNG|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H404a
Length = 609
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|1VNH|A Chain A, Chloroperoxidase From The Fungus Curvularia Inaequalis:
Mutant H496a
Length = 609
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|3BB0|A Chain A, Crystal Structure Of A Trapped Phosphate-Intermediate In
Vanadium Apochloroperoxidase Catalyzing A
Dephosphorylation Reaction
Length = 609
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYHPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 12/112 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GKT V G+G VG A +G G V+ DP A +A G ++ ++ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDP-INALQAAMEGYQVLLVEDVVE 265
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
A F++ T ++ E F +M+ + N+ G D E V L
Sbjct: 266 EAHIFVT-----TTGNDDIITSEHFPRMRDDAIVCNI---GHFDTEIQVAWL 309
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHV 223
++ ++ G +AVLG G+VG VAR+ LG V
Sbjct: 147 QHTDFTIHGANVAVLGLGRVGXSVARKFAALGAKV 181
>pdb|1IDU|A Chain A, Crystal Structure Of The Peroxide Form Of The Vanadium-
Containing Chloroperoxidase From Curvularia Inaequalis
Length = 609
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIAN 484
E ++DVF L+N A Q G T R D P P+ I V N
Sbjct: 163 EDVADVFFALLNDPRGASQEGYNPTPGRYKFDDEPTHPVVLIPVDPNN 210
>pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
Ot3
pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
Formyl Transferase From Pyrococcus Horikoshii Ot3
Complexed With Adp
Length = 433
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
+ + +LG G++G E+A A+ LG+ V+A D YA A
Sbjct: 20 QKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANA 54
>pdb|1EYZ|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EYZ|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg And
Amppnp
pdb|1EZ1|A Chain A, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
pdb|1EZ1|B Chain B, Structure Of Escherichia Coli Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg, Amppnp,
And Gar
Length = 392
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
+LG G++G EVA + LG+ VIA D YA A
Sbjct: 17 LLGSGELGKEVAIECQRLGVEVIAVDRYADA 47
>pdb|1KJ8|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ8|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase In Complex With Mg-Atp And
Gar
pdb|1KJ9|A Chain A, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJ9|B Chain B, Crystal Structure Of Purt-Encoded Glycinamide
Ribonucleotide Transformylase Complexed With Mg-Atp
pdb|1KJI|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJI|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Amppcp
pdb|1KJJ|A Chain A, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJJ|B Chain B, Crystal Structure Of Glycniamide Ribonucleotide
Transformylase In Complex With Mg-Atp-Gamma-S
pdb|1KJQ|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
pdb|1KJQ|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Transformylase In Complex With Mg-Adp
Length = 391
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
+LG G++G EVA + LG+ VIA D YA A
Sbjct: 16 LLGSGELGKEVAIECQRLGVEVIAVDRYADA 46
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYAPADRARAIGVDLVSFDEAIATADFI 255
GKT+A+ G G VG A + +G VIA D A R + V+L+ ++ + +
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALV 269
Query: 256 SLH 258
L
Sbjct: 270 ELF 272
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +G G VI DP A +A G ++ + DEA
Sbjct: 209 VXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP-INALQAAXEGYEVTTXDEACQ 267
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308
+ F++ T ++ F + K + N+ G D E V+ L+ V +
Sbjct: 268 EGNIFVT-----TTGCIDIILGRHFEQXKDDAIVCNI---GHFDVEIDVKWLNENAVEK 318
>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta-
Lactamase
Length = 358
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDE 247
+LV KT + GFG + V +KGLG+ ++A+ Y A+R +A L + D+
Sbjct: 307 TLVNKTGSTGGFGAYVAYVP--SKGLGVVILANKNYPNAERVKAAHAILSAMDQ 358
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD-PYAPADRARAIGVDLVSFDEAIATADFI 255
G+ +A+ G G +G + AK +G++V+A D + A+ +G DLV A F+
Sbjct: 165 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFM 224
Query: 256 -----SLHMPLTPATSKVLNDETFGKMKKG 280
+H + A SK + +++G
Sbjct: 225 KEKVGGVHAAVVTAVSKPAFQSAYNSIRRG 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,073,315
Number of Sequences: 62578
Number of extensions: 524501
Number of successful extensions: 1677
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1453
Number of HSP's gapped (non-prelim): 133
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)