Query 007512
Match_columns 600
No_of_seqs 416 out of 2888
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 11:37:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01327 PGDH D-3-phosphoglyc 100.0 8E-110 2E-114 926.1 59.9 522 60-600 1-525 (525)
2 PRK13581 D-3-phosphoglycerate 100.0 9E-109 2E-113 917.7 60.2 523 59-600 1-526 (526)
3 KOG0068 D-3-phosphoglycerate d 100.0 1.8E-86 3.9E-91 669.6 32.1 396 60-459 8-406 (406)
4 PRK11790 D-3-phosphoglycerate 100.0 7.3E-74 1.6E-78 619.1 42.5 394 55-598 7-408 (409)
5 COG0111 SerA Phosphoglycerate 100.0 4.2E-71 9E-76 578.7 33.2 316 57-376 2-320 (324)
6 PRK15409 bifunctional glyoxyla 100.0 3.1E-68 6.7E-73 558.7 36.5 312 58-371 2-320 (323)
7 COG1052 LdhA Lactate dehydroge 100.0 6E-66 1.3E-70 539.3 33.5 314 57-371 1-323 (324)
8 PRK08410 2-hydroxyacid dehydro 100.0 2.1E-65 4.6E-70 535.5 34.6 298 60-363 2-310 (311)
9 PRK13243 glyoxylate reductase; 100.0 6.7E-65 1.4E-69 536.4 36.4 313 58-372 2-324 (333)
10 PRK06487 glycerate dehydrogena 100.0 5.7E-64 1.2E-68 526.0 34.4 302 60-369 2-316 (317)
11 PLN02306 hydroxypyruvate reduc 100.0 8.1E-63 1.8E-67 527.4 35.5 338 55-393 12-380 (386)
12 PRK06932 glycerate dehydrogena 100.0 1.6E-62 3.5E-67 514.2 32.8 272 86-363 32-313 (314)
13 PLN02928 oxidoreductase family 100.0 1.7E-61 3.6E-66 512.7 36.0 309 54-367 14-342 (347)
14 PLN03139 formate dehydrogenase 100.0 2.5E-61 5.5E-66 514.4 35.3 294 71-365 67-369 (386)
15 PRK07574 formate dehydrogenase 100.0 1.4E-60 3.1E-65 509.0 34.6 295 73-368 62-365 (385)
16 PRK08605 D-lactate dehydrogena 100.0 2.8E-58 6E-63 486.1 32.5 311 57-370 2-332 (332)
17 PRK12480 D-lactate dehydrogena 100.0 4.2E-58 9.2E-63 483.6 32.0 308 59-370 2-330 (330)
18 PRK15438 erythronate-4-phospha 100.0 5.1E-55 1.1E-59 464.4 32.3 273 59-361 1-279 (378)
19 KOG0069 Glyoxylate/hydroxypyru 100.0 4.8E-55 1E-59 452.4 26.2 282 87-369 49-334 (336)
20 PRK00257 erythronate-4-phospha 100.0 2.7E-54 5.8E-59 460.2 32.2 282 59-368 1-286 (381)
21 PRK15469 ghrA bifunctional gly 100.0 8E-54 1.7E-58 447.7 29.0 267 96-371 36-308 (312)
22 PRK06436 glycerate dehydrogena 100.0 3.3E-53 7.1E-58 440.9 31.1 283 60-371 2-290 (303)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 7.6E-45 1.6E-49 351.5 17.0 176 163-338 1-178 (178)
24 TIGR00719 sda_beta L-serine de 100.0 6.4E-39 1.4E-43 317.0 21.7 188 383-586 19-208 (208)
25 KOG0067 Transcription factor C 100.0 1.6E-29 3.5E-34 259.1 13.6 288 75-370 49-349 (435)
26 PRK06545 prephenate dehydrogen 99.9 5.4E-26 1.2E-30 243.1 8.8 331 198-587 1-351 (359)
27 PRK08818 prephenate dehydrogen 99.9 6.8E-23 1.5E-27 218.3 9.9 318 196-585 3-354 (370)
28 PF00389 2-Hacid_dh: D-isomer 99.9 7.6E-21 1.6E-25 175.1 15.1 101 61-162 1-101 (133)
29 PTZ00075 Adenosylhomocysteinas 99.8 3.2E-20 6.9E-25 201.5 17.3 170 127-321 197-368 (476)
30 TIGR02853 spore_dpaA dipicolin 99.8 1.2E-18 2.6E-23 180.8 11.8 151 109-289 81-242 (287)
31 PRK07417 arogenate dehydrogena 99.7 5.9E-17 1.3E-21 167.7 9.2 246 198-461 1-266 (279)
32 COG0287 TyrA Prephenate dehydr 99.6 1.5E-15 3.2E-20 156.6 10.3 225 197-442 3-249 (279)
33 PRK07502 cyclohexadienyl dehyd 99.6 1.4E-15 3.1E-20 159.4 10.3 253 197-464 6-280 (307)
34 PLN02256 arogenate dehydrogena 99.6 6.7E-16 1.4E-20 161.5 6.5 236 194-451 33-287 (304)
35 PRK08306 dipicolinate synthase 99.6 2.6E-14 5.7E-19 149.1 16.0 165 95-288 52-242 (296)
36 PRK08507 prephenate dehydrogen 99.6 3.2E-15 6.9E-20 154.4 8.7 235 198-452 1-255 (275)
37 PLN02494 adenosylhomocysteinas 99.6 1.1E-14 2.5E-19 158.0 10.5 121 192-317 249-373 (477)
38 PRK08655 prephenate dehydrogen 99.5 5E-14 1.1E-18 154.6 9.3 233 198-451 1-253 (437)
39 TIGR00936 ahcY adenosylhomocys 99.5 1.5E-13 3.3E-18 148.1 11.1 227 69-316 71-312 (406)
40 PRK13403 ketol-acid reductoiso 99.5 1.4E-13 3.1E-18 142.9 8.6 94 192-286 11-105 (335)
41 PLN02712 arogenate dehydrogena 99.4 9.1E-14 2E-18 159.3 7.2 242 191-451 363-620 (667)
42 COG1760 SdaA L-serine deaminas 99.4 3.7E-16 8E-21 156.3 -10.8 198 383-599 51-253 (262)
43 PRK11199 tyrA bifunctional cho 99.4 7.1E-13 1.5E-17 142.8 9.0 260 156-463 68-344 (374)
44 PRK05476 S-adenosyl-L-homocyst 99.3 4.1E-12 8.8E-17 137.9 10.6 211 69-299 87-312 (425)
45 PRK14806 bifunctional cyclohex 99.3 5.1E-12 1.1E-16 147.6 11.1 225 198-441 4-253 (735)
46 PLN02712 arogenate dehydrogena 99.3 3.7E-12 8.1E-17 146.1 9.6 240 194-451 49-303 (667)
47 PF02153 PDH: Prephenate dehyd 99.3 6.1E-13 1.3E-17 136.3 0.4 224 212-451 1-245 (258)
48 PF00670 AdoHcyase_NAD: S-aden 99.3 1.8E-11 3.8E-16 115.8 9.7 104 191-298 17-122 (162)
49 PF03446 NAD_binding_2: NAD bi 99.2 2.1E-11 4.6E-16 116.3 8.1 113 198-312 2-117 (163)
50 COG2084 MmsB 3-hydroxyisobutyr 99.2 1E-10 2.3E-15 120.5 9.9 113 198-312 1-118 (286)
51 PRK11559 garR tartronate semia 99.1 1.9E-10 4.2E-15 119.9 10.0 109 198-306 3-115 (296)
52 TIGR01505 tartro_sem_red 2-hyd 99.1 2.5E-10 5.4E-15 118.9 9.8 108 199-306 1-112 (291)
53 PRK15461 NADH-dependent gamma- 99.1 6.1E-10 1.3E-14 116.4 10.3 109 198-306 2-114 (296)
54 cd00401 AdoHcyase S-adenosyl-L 99.0 7.7E-10 1.7E-14 120.0 10.6 104 191-298 196-301 (413)
55 PRK12490 6-phosphogluconate de 99.0 1.2E-09 2.7E-14 114.3 10.8 111 199-312 2-117 (299)
56 PRK05479 ketol-acid reductoiso 99.0 8.5E-10 1.8E-14 116.3 8.8 122 192-323 12-135 (330)
57 PRK09599 6-phosphogluconate de 98.9 4.5E-09 9.7E-14 110.1 10.8 112 198-312 1-117 (301)
58 cd04902 ACT_3PGDH-xct C-termin 98.9 6.8E-09 1.5E-13 84.8 8.1 72 529-600 2-73 (73)
59 PRK15059 tartronate semialdehy 98.9 6.8E-09 1.5E-13 108.4 10.2 108 199-306 2-112 (292)
60 PF03315 SDH_beta: Serine dehy 98.9 7.3E-10 1.6E-14 105.0 2.1 120 385-517 16-157 (157)
61 PLN02350 phosphogluconate dehy 98.9 1.4E-08 3.1E-13 112.6 12.3 120 199-319 8-139 (493)
62 PRK08293 3-hydroxybutyryl-CoA 98.9 3.9E-08 8.5E-13 102.3 15.0 174 198-392 4-206 (287)
63 PRK07066 3-hydroxybutyryl-CoA 98.8 5.9E-08 1.3E-12 102.4 15.2 174 198-392 8-205 (321)
64 PLN02545 3-hydroxybutyryl-CoA 98.8 6.8E-08 1.5E-12 100.8 14.5 106 198-306 5-137 (295)
65 TIGR00465 ilvC ketol-acid redu 98.8 1.7E-08 3.6E-13 106.3 9.0 95 195-291 1-97 (314)
66 TIGR00872 gnd_rel 6-phosphoglu 98.8 2.8E-08 6.1E-13 104.0 10.0 107 198-306 1-112 (298)
67 PRK05225 ketol-acid reductoiso 98.8 1.1E-08 2.4E-13 110.5 6.6 99 184-284 21-128 (487)
68 PRK09260 3-hydroxybutyryl-CoA 98.7 1.5E-07 3.2E-12 98.0 14.5 173 198-392 2-202 (288)
69 PRK15040 L-serine dehydratase 98.7 5.8E-08 1.3E-12 105.2 11.5 151 385-560 18-194 (454)
70 COG0499 SAM1 S-adenosylhomocys 98.7 4.8E-08 1E-12 101.7 9.5 101 193-297 205-307 (420)
71 PF07991 IlvN: Acetohydroxy ac 98.7 1.9E-08 4.1E-13 94.9 5.9 90 195-285 2-93 (165)
72 PLN02858 fructose-bisphosphate 98.7 5E-08 1.1E-12 120.1 11.0 109 197-305 4-116 (1378)
73 PRK11861 bifunctional prephena 98.7 6.9E-09 1.5E-13 120.1 3.2 181 255-451 1-197 (673)
74 TIGR01692 HIBADH 3-hydroxyisob 98.7 5E-08 1.1E-12 101.5 8.9 105 202-306 1-109 (288)
75 PTZ00142 6-phosphogluconate de 98.7 6.2E-08 1.4E-12 107.2 9.6 119 198-317 2-131 (470)
76 PLN02858 fructose-bisphosphate 98.7 7.6E-08 1.6E-12 118.5 11.1 107 197-303 324-434 (1378)
77 KOG0409 Predicted dehydrogenas 98.7 7.3E-08 1.6E-12 98.5 9.0 111 195-305 33-148 (327)
78 PRK15023 L-serine deaminase; P 98.6 2E-07 4.3E-12 101.1 10.2 150 385-560 18-194 (454)
79 PRK11064 wecC UDP-N-acetyl-D-m 98.6 2.1E-07 4.5E-12 101.9 10.6 106 198-303 4-135 (415)
80 PRK07819 3-hydroxybutyryl-CoA 98.6 7E-07 1.5E-11 93.1 14.0 170 198-392 6-207 (286)
81 PRK07530 3-hydroxybutyryl-CoA 98.6 7.3E-07 1.6E-11 93.0 14.1 129 198-340 5-161 (292)
82 cd04901 ACT_3PGDH C-terminal A 98.6 1.2E-07 2.7E-12 76.6 5.9 68 529-598 2-69 (69)
83 TIGR00873 gnd 6-phosphoglucona 98.6 2.2E-07 4.7E-12 103.0 9.6 118 199-317 1-128 (467)
84 cd01075 NAD_bind_Leu_Phe_Val_D 98.5 3.8E-07 8.2E-12 90.1 10.2 108 192-306 23-133 (200)
85 PRK15182 Vi polysaccharide bio 98.5 4.5E-07 9.8E-12 99.5 11.4 134 198-332 7-172 (425)
86 PRK14619 NAD(P)H-dependent gly 98.5 2E-07 4.4E-12 98.0 8.3 83 196-290 3-85 (308)
87 PRK06129 3-hydroxyacyl-CoA deh 98.5 1.7E-06 3.7E-11 91.0 14.9 104 198-303 3-132 (308)
88 PLN02688 pyrroline-5-carboxyla 98.5 1.2E-06 2.6E-11 89.9 13.3 101 198-302 1-108 (266)
89 PRK05808 3-hydroxybutyryl-CoA 98.5 1.3E-06 2.9E-11 90.5 13.8 172 198-392 4-203 (282)
90 PF03807 F420_oxidored: NADP o 98.5 1.5E-07 3.2E-12 81.3 5.2 88 199-289 1-96 (96)
91 KOG1370 S-adenosylhomocysteine 98.5 3.3E-07 7.2E-12 93.4 8.0 95 193-291 210-305 (434)
92 PRK06444 prephenate dehydrogen 98.5 2E-08 4.3E-13 98.8 -1.5 181 198-440 1-189 (197)
93 PRK14194 bifunctional 5,10-met 98.4 5.9E-07 1.3E-11 93.5 8.4 81 191-290 153-234 (301)
94 PRK06130 3-hydroxybutyryl-CoA 98.4 4.1E-06 8.9E-11 88.0 14.9 109 198-309 5-136 (311)
95 TIGR00561 pntA NAD(P) transhyd 98.4 7.4E-06 1.6E-10 91.2 17.4 179 98-288 64-285 (511)
96 PRK06035 3-hydroxyacyl-CoA deh 98.4 5.2E-06 1.1E-10 86.6 15.2 115 198-317 4-148 (291)
97 TIGR00518 alaDH alanine dehydr 98.4 6.9E-07 1.5E-11 96.4 8.9 94 194-287 164-267 (370)
98 PRK08268 3-hydroxy-acyl-CoA de 98.4 3.1E-06 6.7E-11 95.0 14.2 116 198-319 8-151 (507)
99 PRK12491 pyrroline-5-carboxyla 98.4 6.3E-07 1.4E-11 92.7 7.8 102 197-302 2-110 (272)
100 cd04903 ACT_LSD C-terminal ACT 98.4 1.3E-06 2.7E-11 70.2 7.9 71 528-598 1-71 (71)
101 cd04879 ACT_3PGDH-like ACT_3PG 98.4 1.2E-06 2.5E-11 70.2 7.5 70 529-598 2-71 (71)
102 cd01065 NAD_bind_Shikimate_DH 98.4 2.1E-06 4.6E-11 80.4 10.4 107 193-304 15-131 (155)
103 PRK07531 bifunctional 3-hydrox 98.4 6.2E-06 1.3E-10 92.4 15.1 104 198-303 5-130 (495)
104 TIGR03026 NDP-sugDHase nucleot 98.3 3.3E-06 7.2E-11 92.4 12.5 101 198-298 1-131 (411)
105 PRK07679 pyrroline-5-carboxyla 98.3 2.4E-06 5.2E-11 88.6 9.0 102 197-302 3-112 (279)
106 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 1.2E-05 2.7E-10 90.0 15.0 117 198-319 6-149 (503)
107 PRK14189 bifunctional 5,10-met 98.2 2.6E-06 5.6E-11 88.2 8.1 81 191-290 152-233 (285)
108 PRK13302 putative L-aspartate 98.2 3E-06 6.6E-11 87.6 8.5 103 197-304 6-115 (271)
109 PF01842 ACT: ACT domain; Int 98.2 1.6E-06 3.5E-11 69.0 4.8 65 527-591 1-66 (66)
110 PRK14188 bifunctional 5,10-met 98.2 4.1E-06 9E-11 87.3 8.5 81 191-290 152-233 (296)
111 PRK14618 NAD(P)H-dependent gly 98.2 5.1E-06 1.1E-10 88.1 9.3 87 197-289 4-106 (328)
112 PRK00094 gpsA NAD(P)H-dependen 98.2 3.6E-06 7.8E-11 88.6 7.6 91 198-290 2-108 (325)
113 COG1023 Gnd Predicted 6-phosph 98.2 1.1E-05 2.4E-10 80.3 10.0 115 198-315 1-120 (300)
114 PRK14179 bifunctional 5,10-met 98.2 5.7E-06 1.2E-10 85.6 8.4 81 191-290 152-233 (284)
115 PRK11880 pyrroline-5-carboxyla 98.1 5.7E-05 1.2E-09 77.6 15.0 99 198-302 3-107 (267)
116 TIGR00720 sda_mono L-serine de 98.1 1.2E-05 2.7E-10 87.4 9.9 135 405-560 41-194 (455)
117 PRK15057 UDP-glucose 6-dehydro 98.1 2.1E-05 4.5E-10 85.5 11.5 129 198-333 1-160 (388)
118 PRK09424 pntA NAD(P) transhydr 98.1 3.6E-05 7.8E-10 86.0 13.2 186 98-288 65-286 (509)
119 TIGR01724 hmd_rel H2-forming N 98.1 1.9E-05 4.1E-10 82.3 10.1 91 209-303 32-129 (341)
120 PRK07680 late competence prote 98.1 8.6E-06 1.9E-10 84.2 7.5 100 199-302 2-109 (273)
121 PRK06476 pyrroline-5-carboxyla 98.1 1E-05 2.2E-10 82.8 8.0 99 199-303 2-107 (258)
122 cd01080 NAD_bind_m-THF_DH_Cycl 98.1 1.8E-05 3.8E-10 76.2 9.0 82 193-293 40-122 (168)
123 COG0059 IlvC Ketol-acid reduct 98.0 1.1E-05 2.5E-10 82.7 7.2 88 194-282 15-104 (338)
124 KOG2380 Prephenate dehydrogena 98.0 7.3E-05 1.6E-09 77.7 12.7 163 197-368 52-216 (480)
125 PF03721 UDPG_MGDP_dh_N: UDP-g 98.0 2.2E-05 4.8E-10 76.7 8.0 134 198-332 1-170 (185)
126 PRK08229 2-dehydropantoate 2-r 98.0 3.4E-05 7.3E-10 82.0 9.9 106 198-306 3-125 (341)
127 PRK14175 bifunctional 5,10-met 97.9 2.5E-05 5.5E-10 81.0 8.4 81 191-290 152-233 (286)
128 PF02737 3HCDH_N: 3-hydroxyacy 97.9 3E-05 6.5E-10 75.4 8.0 127 199-336 1-154 (180)
129 PRK06928 pyrroline-5-carboxyla 97.9 4.9E-05 1.1E-09 78.8 9.9 105 198-306 2-115 (277)
130 cd04878 ACT_AHAS N-terminal AC 97.9 3.2E-05 7E-10 62.0 6.5 69 527-595 1-71 (72)
131 COG2085 Predicted dinucleotide 97.9 3.8E-05 8.3E-10 75.6 8.1 88 198-288 2-94 (211)
132 PF01488 Shikimate_DH: Shikima 97.9 2.2E-05 4.8E-10 72.6 5.6 94 194-290 9-112 (135)
133 PF10727 Rossmann-like: Rossma 97.8 1.8E-05 4E-10 72.5 4.9 90 196-287 9-104 (127)
134 cd05191 NAD_bind_amino_acid_DH 97.8 6.9E-05 1.5E-09 63.8 8.1 67 193-287 19-86 (86)
135 PF02882 THF_DHG_CYH_C: Tetrah 97.8 6.8E-05 1.5E-09 71.5 8.6 82 191-291 30-112 (160)
136 PRK05472 redox-sensing transcr 97.8 2.2E-05 4.7E-10 78.3 5.1 127 159-303 64-201 (213)
137 TIGR01915 npdG NADPH-dependent 97.8 4.5E-05 9.8E-10 76.3 6.8 90 198-290 1-104 (219)
138 COG0677 WecC UDP-N-acetyl-D-ma 97.8 0.00029 6.2E-09 75.2 12.9 143 198-347 10-190 (436)
139 TIGR01546 GAPDH-II_archae glyc 97.7 9.4E-05 2E-09 78.4 8.9 85 200-287 1-108 (333)
140 PF01210 NAD_Gly3P_dh_N: NAD-d 97.7 6.6E-05 1.4E-09 71.2 7.0 89 199-289 1-105 (157)
141 PRK13304 L-aspartate dehydroge 97.7 9.3E-05 2E-09 76.3 8.2 101 198-303 2-111 (265)
142 cd05213 NAD_bind_Glutamyl_tRNA 97.7 9.9E-05 2.1E-09 77.9 8.5 92 195-288 176-274 (311)
143 cd01079 NAD_bind_m-THF_DH NAD 97.7 0.00014 3.1E-09 71.0 8.8 98 184-288 49-157 (197)
144 PF01262 AlaDh_PNT_C: Alanine 97.7 8.2E-05 1.8E-09 71.4 7.0 95 193-287 16-139 (168)
145 cd04889 ACT_PDH-BS-like C-term 97.7 8.3E-05 1.8E-09 57.7 5.8 45 531-576 3-47 (56)
146 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00012 2.5E-09 80.5 8.9 92 194-288 177-278 (417)
147 PRK10792 bifunctional 5,10-met 97.7 0.00013 2.8E-09 75.6 8.4 79 191-288 153-232 (285)
148 cd04874 ACT_Af1403 N-terminal 97.7 0.00017 3.8E-09 57.8 7.4 68 529-597 3-71 (72)
149 PRK09287 6-phosphogluconate de 97.7 0.00012 2.5E-09 81.2 8.4 109 208-317 1-119 (459)
150 PRK07634 pyrroline-5-carboxyla 97.7 0.00019 4.2E-09 72.5 9.3 103 197-304 4-114 (245)
151 cd05212 NAD_bind_m-THF_DH_Cycl 97.6 0.00034 7.4E-09 65.3 9.8 81 191-290 22-103 (140)
152 PRK14191 bifunctional 5,10-met 97.6 0.00017 3.6E-09 74.8 8.4 81 191-290 151-232 (285)
153 PTZ00431 pyrroline carboxylate 97.6 0.00013 2.9E-09 74.9 7.7 122 197-337 3-130 (260)
154 PRK06522 2-dehydropantoate 2-r 97.6 0.0004 8.7E-09 72.3 11.2 107 198-308 1-120 (304)
155 COG0345 ProC Pyrroline-5-carbo 97.6 0.00033 7.2E-09 72.0 10.3 104 198-309 2-115 (266)
156 PRK00045 hemA glutamyl-tRNA re 97.6 0.00015 3.3E-09 79.8 8.3 92 194-288 179-281 (423)
157 PRK12921 2-dehydropantoate 2-r 97.6 0.00024 5.2E-09 74.1 9.4 108 198-308 1-122 (305)
158 PRK14178 bifunctional 5,10-met 97.6 0.00014 3E-09 75.2 7.3 81 191-290 146-227 (279)
159 PRK14176 bifunctional 5,10-met 97.6 0.00021 4.5E-09 74.1 8.5 80 191-289 158-238 (287)
160 PRK11730 fadB multifunctional 97.6 0.00056 1.2E-08 80.1 13.1 172 198-392 314-513 (715)
161 PRK08577 hypothetical protein; 97.6 0.00075 1.6E-08 62.6 11.3 75 526-600 56-134 (136)
162 PRK13562 acetolactate synthase 97.6 0.00024 5.1E-09 60.1 6.8 74 527-600 3-79 (84)
163 cd05311 NAD_bind_2_malic_enz N 97.6 0.0013 2.9E-08 66.3 13.5 153 192-361 20-196 (226)
164 PF13291 ACT_4: ACT domain; PD 97.5 0.00021 4.6E-09 59.7 6.5 68 529-596 9-79 (80)
165 PRK14192 bifunctional 5,10-met 97.5 0.00029 6.2E-09 73.4 8.7 81 191-290 153-234 (283)
166 PLN00203 glutamyl-tRNA reducta 97.5 0.00019 4.1E-09 80.6 7.6 93 194-289 263-371 (519)
167 TIGR02437 FadB fatty oxidation 97.5 0.0011 2.3E-08 77.7 14.0 172 198-392 314-513 (714)
168 PRK14183 bifunctional 5,10-met 97.5 0.00034 7.3E-09 72.4 8.5 79 191-288 151-230 (281)
169 PRK08178 acetolactate synthase 97.5 0.00048 1E-08 59.6 7.8 74 525-598 7-81 (96)
170 PRK11152 ilvM acetolactate syn 97.5 0.00052 1.1E-08 57.2 7.7 72 526-597 3-75 (76)
171 PRK12557 H(2)-dependent methyl 97.5 0.00032 7E-09 75.0 8.2 93 209-302 32-132 (342)
172 PRK06249 2-dehydropantoate 2-r 97.5 0.0023 5E-08 67.5 14.5 108 198-309 6-127 (313)
173 PLN02353 probable UDP-glucose 97.4 0.0024 5.3E-08 71.1 15.0 134 198-333 2-176 (473)
174 TIGR02440 FadJ fatty oxidation 97.4 0.0014 3.1E-08 76.5 13.7 172 198-392 305-505 (699)
175 PRK06737 acetolactate synthase 97.4 0.00049 1.1E-08 57.3 7.0 71 527-597 3-75 (76)
176 cd04908 ACT_Bt0572_1 N-termina 97.4 0.00039 8.4E-09 56.0 5.9 57 528-588 3-59 (66)
177 cd01078 NAD_bind_H4MPT_DH NADP 97.4 0.0012 2.6E-08 64.6 10.6 98 192-293 23-135 (194)
178 cd04883 ACT_AcuB C-terminal AC 97.4 0.00052 1.1E-08 55.7 6.5 62 528-589 3-64 (72)
179 PRK11154 fadJ multifunctional 97.4 0.0021 4.7E-08 75.2 14.0 172 198-392 310-510 (708)
180 TIGR02441 fa_ox_alpha_mit fatt 97.4 0.0016 3.5E-08 76.4 13.0 172 198-392 336-535 (737)
181 cd04882 ACT_Bt0572_2 C-termina 97.3 0.0005 1.1E-08 54.4 6.1 59 529-589 2-60 (65)
182 PRK14190 bifunctional 5,10-met 97.3 0.00085 1.8E-08 69.6 9.2 82 191-291 152-234 (284)
183 PRK14170 bifunctional 5,10-met 97.3 0.0007 1.5E-08 70.2 8.6 81 191-290 151-232 (284)
184 TIGR02371 ala_DH_arch alanine 97.3 0.00082 1.8E-08 71.4 9.4 88 197-290 128-225 (325)
185 PRK00258 aroE shikimate 5-dehy 97.3 0.00075 1.6E-08 70.1 8.8 96 193-288 119-222 (278)
186 PRK14186 bifunctional 5,10-met 97.3 0.00072 1.6E-08 70.5 8.5 82 191-291 152-234 (297)
187 PF03720 UDPG_MGDP_dh_C: UDP-g 97.3 0.0007 1.5E-08 60.0 7.1 78 208-286 18-100 (106)
188 PRK14169 bifunctional 5,10-met 97.3 0.00078 1.7E-08 69.8 8.5 81 191-290 150-231 (282)
189 PRK14982 acyl-ACP reductase; P 97.3 0.0019 4.2E-08 68.8 11.7 98 191-294 149-253 (340)
190 PLN02516 methylenetetrahydrofo 97.3 0.00081 1.8E-08 70.2 8.6 81 191-290 161-242 (299)
191 PRK14177 bifunctional 5,10-met 97.3 0.00085 1.8E-08 69.5 8.6 79 191-288 153-232 (284)
192 PRK14166 bifunctional 5,10-met 97.3 0.00079 1.7E-08 69.8 8.3 79 191-288 151-230 (282)
193 cd04888 ACT_PheB-BS C-terminal 97.3 0.0011 2.3E-08 54.4 7.5 70 528-598 2-75 (76)
194 PRK14172 bifunctional 5,10-met 97.3 0.00099 2.2E-08 68.9 8.7 79 191-288 152-231 (278)
195 PRK14187 bifunctional 5,10-met 97.2 0.001 2.2E-08 69.3 8.5 81 191-290 154-235 (294)
196 PRK14173 bifunctional 5,10-met 97.2 0.0011 2.4E-08 68.9 8.7 82 191-291 149-231 (287)
197 PLN02897 tetrahydrofolate dehy 97.2 0.0009 2E-08 70.9 8.1 81 191-290 208-289 (345)
198 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.2 0.00054 1.2E-08 55.8 5.2 70 528-597 2-74 (79)
199 PRK14180 bifunctional 5,10-met 97.2 0.0011 2.3E-08 68.8 8.5 79 191-288 152-231 (282)
200 PRK14182 bifunctional 5,10-met 97.2 0.0012 2.7E-08 68.3 8.6 81 191-290 151-232 (282)
201 PRK14171 bifunctional 5,10-met 97.2 0.0012 2.7E-08 68.5 8.4 79 191-288 153-232 (288)
202 PRK14181 bifunctional 5,10-met 97.2 0.0014 3E-08 68.1 8.6 81 191-290 147-232 (287)
203 TIGR00119 acolac_sm acetolacta 97.2 0.0011 2.5E-08 62.9 7.3 72 527-598 2-75 (157)
204 COG0686 Ald Alanine dehydrogen 97.1 0.00079 1.7E-08 69.7 6.5 94 194-287 165-268 (371)
205 PLN02616 tetrahydrofolate dehy 97.1 0.0013 2.9E-08 69.9 8.3 80 191-289 225-305 (364)
206 PRK06141 ornithine cyclodeamin 97.1 0.0016 3.5E-08 68.9 9.0 87 196-288 124-220 (314)
207 PRK11895 ilvH acetolactate syn 97.1 0.0012 2.6E-08 63.0 7.1 72 527-598 3-76 (161)
208 PRK14193 bifunctional 5,10-met 97.1 0.0018 3.8E-08 67.3 8.7 111 191-342 152-265 (284)
209 PF13710 ACT_5: ACT domain; PD 97.1 0.0016 3.5E-08 52.3 6.3 61 535-595 1-63 (63)
210 PRK07340 ornithine cyclodeamin 97.1 0.0017 3.7E-08 68.3 8.2 87 196-289 124-219 (304)
211 COG1250 FadB 3-hydroxyacyl-CoA 97.0 0.014 3.1E-07 61.3 14.6 174 197-392 3-203 (307)
212 cd01076 NAD_bind_1_Glu_DH NAD( 97.0 0.0022 4.7E-08 64.8 8.3 34 193-226 27-60 (227)
213 PRK14185 bifunctional 5,10-met 97.0 0.0024 5.2E-08 66.6 8.6 81 191-290 151-236 (293)
214 COG0190 FolD 5,10-methylene-te 97.0 0.0017 3.7E-08 66.8 7.4 82 191-291 150-232 (283)
215 PF13241 NAD_binding_7: Putati 97.0 0.00071 1.5E-08 59.6 4.1 86 194-287 4-91 (103)
216 PRK00194 hypothetical protein; 97.0 0.0006 1.3E-08 58.3 3.4 65 526-592 3-71 (90)
217 TIGR01763 MalateDH_bact malate 97.0 0.0031 6.8E-08 66.4 9.2 113 198-312 2-147 (305)
218 TIGR00507 aroE shikimate 5-deh 97.0 0.0033 7.2E-08 64.9 9.2 104 195-303 115-228 (270)
219 TIGR01921 DAP-DH diaminopimela 96.9 0.0023 5E-08 67.6 7.9 85 198-287 4-91 (324)
220 PRK06349 homoserine dehydrogen 96.9 0.078 1.7E-06 58.6 20.2 67 527-594 349-418 (426)
221 PRK06718 precorrin-2 dehydroge 96.9 0.0017 3.7E-08 64.3 6.4 90 192-287 5-100 (202)
222 PRK14184 bifunctional 5,10-met 96.9 0.0029 6.3E-08 65.8 8.1 79 191-288 151-234 (286)
223 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0022 4.7E-08 57.2 6.2 63 199-261 2-72 (120)
224 PRK14168 bifunctional 5,10-met 96.9 0.0034 7.3E-08 65.6 8.4 81 191-290 155-240 (297)
225 cd04887 ACT_MalLac-Enz ACT_Mal 96.9 0.0033 7.2E-08 51.3 6.7 66 529-595 2-70 (74)
226 PRK12439 NAD(P)H-dependent gly 96.9 0.002 4.3E-08 68.9 6.7 90 198-290 8-114 (341)
227 PRK08618 ornithine cyclodeamin 96.8 0.0045 9.7E-08 65.8 9.3 87 196-289 126-223 (325)
228 cd04877 ACT_TyrR N-terminal AC 96.8 0.0037 8E-08 51.5 6.8 69 529-600 3-72 (74)
229 PRK13940 glutamyl-tRNA reducta 96.8 0.0037 8E-08 68.6 8.8 89 194-287 178-273 (414)
230 PRK14174 bifunctional 5,10-met 96.8 0.0035 7.5E-08 65.5 8.1 81 191-290 153-238 (295)
231 COG0362 Gnd 6-phosphogluconate 96.8 0.023 4.9E-07 60.9 14.1 155 198-364 4-168 (473)
232 smart00859 Semialdhyde_dh Semi 96.8 0.0021 4.6E-08 58.0 5.7 88 199-288 1-100 (122)
233 TIGR01470 cysG_Nterm siroheme 96.8 0.0026 5.5E-08 63.2 6.6 90 193-287 5-100 (205)
234 CHL00100 ilvH acetohydroxyacid 96.8 0.0021 4.6E-08 62.0 5.8 72 527-598 3-76 (174)
235 PRK14167 bifunctional 5,10-met 96.8 0.0048 1E-07 64.5 8.7 81 191-290 151-236 (297)
236 PRK09310 aroDE bifunctional 3- 96.8 0.003 6.4E-08 70.7 7.4 71 192-262 327-401 (477)
237 TIGR02992 ectoine_eutC ectoine 96.7 0.0065 1.4E-07 64.6 9.5 85 197-287 129-224 (326)
238 PRK14620 NAD(P)H-dependent gly 96.7 0.0037 8E-08 66.2 7.6 90 199-290 2-109 (326)
239 COG0373 HemA Glutamyl-tRNA red 96.7 0.0055 1.2E-07 66.7 8.9 93 194-289 175-276 (414)
240 TIGR02354 thiF_fam2 thiamine b 96.7 0.0027 5.9E-08 62.8 5.9 91 193-284 17-142 (200)
241 COG4747 ACT domain-containing 96.7 0.0095 2.1E-07 53.2 8.5 105 444-577 15-119 (142)
242 TIGR03376 glycerol3P_DH glycer 96.7 0.0051 1.1E-07 65.8 8.3 89 199-289 1-118 (342)
243 COG0240 GpsA Glycerol-3-phosph 96.7 0.0042 9.2E-08 65.4 7.3 91 198-290 2-108 (329)
244 PRK14031 glutamate dehydrogena 96.6 0.008 1.7E-07 66.2 9.4 108 192-306 223-360 (444)
245 PTZ00345 glycerol-3-phosphate 96.6 0.0069 1.5E-07 65.4 8.6 92 197-290 11-132 (365)
246 cd04869 ACT_GcvR_2 ACT domains 96.6 0.0054 1.2E-07 51.0 6.1 61 529-589 2-69 (81)
247 PRK06046 alanine dehydrogenase 96.6 0.008 1.7E-07 63.9 8.9 86 197-289 129-225 (326)
248 PF02423 OCD_Mu_crystall: Orni 96.6 0.0053 1.1E-07 64.9 7.4 90 198-291 129-228 (313)
249 PRK06719 precorrin-2 dehydroge 96.6 0.0054 1.2E-07 58.4 6.7 68 192-260 8-79 (157)
250 PTZ00117 malate dehydrogenase; 96.6 0.0098 2.1E-07 63.1 9.3 93 195-288 3-123 (319)
251 cd04875 ACT_F4HF-DF N-terminal 96.5 0.0051 1.1E-07 50.6 5.6 49 529-577 2-50 (74)
252 COG1064 AdhP Zn-dependent alco 96.5 0.0068 1.5E-07 64.4 7.7 45 197-241 167-212 (339)
253 PRK12549 shikimate 5-dehydroge 96.5 0.0068 1.5E-07 63.2 7.7 69 194-262 124-203 (284)
254 PRK08269 3-hydroxybutyryl-CoA 96.5 0.03 6.5E-07 59.3 12.6 104 208-315 1-140 (314)
255 TIGR00670 asp_carb_tr aspartat 96.5 0.054 1.2E-06 57.0 14.3 93 194-287 147-263 (301)
256 PRK00779 ornithine carbamoyltr 96.5 0.051 1.1E-06 57.3 14.1 127 140-287 116-265 (304)
257 cd04909 ACT_PDH-BS C-terminal 96.5 0.0077 1.7E-07 48.5 6.0 62 527-588 2-64 (69)
258 PRK01713 ornithine carbamoyltr 96.4 0.045 9.7E-07 58.5 13.4 128 140-287 119-275 (334)
259 cd05313 NAD_bind_2_Glu_DH NAD( 96.4 0.035 7.7E-07 56.9 12.1 108 192-306 33-171 (254)
260 PRK09414 glutamate dehydrogena 96.4 0.011 2.4E-07 65.2 9.0 108 192-306 227-361 (445)
261 PRK04435 hypothetical protein; 96.4 0.01 2.3E-07 55.8 7.7 73 526-599 69-145 (147)
262 PRK13301 putative L-aspartate 96.4 0.012 2.6E-07 60.4 8.6 91 198-293 3-99 (267)
263 cd04893 ACT_GcvR_1 ACT domains 96.4 0.0051 1.1E-07 51.2 4.9 47 528-576 3-49 (77)
264 TIGR00658 orni_carb_tr ornithi 96.4 0.06 1.3E-06 56.8 13.9 126 141-287 113-264 (304)
265 cd04876 ACT_RelA-SpoT ACT dom 96.4 0.011 2.3E-07 45.8 6.3 65 531-596 3-70 (71)
266 PRK06823 ornithine cyclodeamin 96.4 0.012 2.5E-07 62.4 8.4 86 197-288 128-223 (315)
267 COG2423 Predicted ornithine cy 96.4 0.014 3E-07 62.0 8.9 86 197-288 130-226 (330)
268 COG2150 Predicted regulator of 96.3 0.0084 1.8E-07 56.4 6.3 65 533-597 102-166 (167)
269 cd04886 ACT_ThrD-II-like C-ter 96.3 0.008 1.7E-07 48.0 5.5 59 530-588 2-66 (73)
270 cd05211 NAD_bind_Glu_Leu_Phe_V 96.3 0.02 4.4E-07 57.4 9.5 104 193-304 19-142 (217)
271 PRK14030 glutamate dehydrogena 96.3 0.03 6.4E-07 61.8 11.3 108 192-306 223-361 (445)
272 cd04884 ACT_CBS C-terminal ACT 96.3 0.0089 1.9E-07 48.8 5.7 60 529-588 2-65 (72)
273 PF01118 Semialdhyde_dh: Semia 96.3 0.0037 8.1E-08 56.5 3.7 85 199-288 1-98 (121)
274 PF02558 ApbA: Ketopantoate re 96.3 0.0058 1.3E-07 56.9 5.0 106 200-308 1-121 (151)
275 COG1712 Predicted dinucleotide 96.3 0.0082 1.8E-07 59.7 6.1 93 198-295 1-99 (255)
276 PRK01710 murD UDP-N-acetylmura 96.3 0.01 2.3E-07 65.9 7.7 109 194-303 11-141 (458)
277 PRK06199 ornithine cyclodeamin 96.3 0.013 2.9E-07 63.6 8.3 91 197-290 155-262 (379)
278 cd04870 ACT_PSP_1 CT domains f 96.2 0.01 2.2E-07 49.0 5.7 33 530-562 3-35 (75)
279 PRK06407 ornithine cyclodeamin 96.2 0.021 4.6E-07 60.1 9.4 86 197-288 117-213 (301)
280 PLN02527 aspartate carbamoyltr 96.2 0.11 2.3E-06 54.9 14.6 93 194-287 148-266 (306)
281 PRK00683 murD UDP-N-acetylmura 96.2 0.011 2.4E-07 64.9 7.5 67 197-263 3-71 (418)
282 PRK02255 putrescine carbamoylt 96.2 0.095 2.1E-06 56.1 14.3 64 194-257 151-228 (338)
283 PRK00676 hemA glutamyl-tRNA re 96.2 0.019 4.2E-07 61.1 8.7 90 194-287 171-261 (338)
284 cd05291 HicDH_like L-2-hydroxy 96.2 0.019 4.2E-07 60.4 8.7 93 198-293 1-121 (306)
285 cd04926 ACT_ACR_4 C-terminal 96.1 0.018 3.8E-07 47.3 6.5 59 528-588 3-65 (72)
286 PF00208 ELFV_dehydrog: Glutam 96.1 0.052 1.1E-06 55.4 11.3 106 194-306 29-164 (244)
287 TIGR03026 NDP-sugDHase nucleot 96.1 0.02 4.4E-07 62.7 9.0 89 194-286 310-409 (411)
288 cd04872 ACT_1ZPV ACT domain pr 96.1 0.0051 1.1E-07 52.4 3.4 61 527-589 2-66 (88)
289 PRK13303 L-aspartate dehydroge 96.1 0.019 4.2E-07 59.2 8.1 65 198-262 2-72 (265)
290 PRK07589 ornithine cyclodeamin 96.1 0.019 4.1E-07 61.6 8.2 88 197-288 129-226 (346)
291 PRK08291 ectoine utilization p 96.0 0.03 6.4E-07 59.7 9.4 82 197-284 132-224 (330)
292 COG1004 Ugd Predicted UDP-gluc 96.0 0.047 1E-06 58.8 10.6 102 198-299 1-132 (414)
293 PLN02353 probable UDP-glucose 96.0 0.041 8.9E-07 61.5 10.7 101 193-297 320-455 (473)
294 PLN02477 glutamate dehydrogena 96.0 0.14 3E-06 56.2 14.5 107 192-306 201-328 (410)
295 TIGR01850 argC N-acetyl-gamma- 96.0 0.016 3.4E-07 62.2 7.1 90 198-293 1-105 (346)
296 PRK04207 glyceraldehyde-3-phos 95.9 0.016 3.5E-07 62.0 6.9 32 198-229 2-35 (341)
297 PRK03515 ornithine carbamoyltr 95.9 0.071 1.5E-06 57.0 11.7 98 141-258 119-232 (336)
298 PRK06223 malate dehydrogenase; 95.9 0.032 6.9E-07 58.6 8.9 62 198-260 3-79 (307)
299 PRK00856 pyrB aspartate carbam 95.9 0.093 2E-06 55.4 12.2 63 194-258 153-220 (305)
300 PF00185 OTCace: Aspartate/orn 95.9 0.08 1.7E-06 50.4 10.6 92 196-287 1-120 (158)
301 PRK04284 ornithine carbamoyltr 95.9 0.098 2.1E-06 55.8 12.4 127 141-287 119-274 (332)
302 PF13740 ACT_6: ACT domain; PD 95.8 0.0088 1.9E-07 49.6 3.5 45 531-575 7-51 (76)
303 PRK03369 murD UDP-N-acetylmura 95.8 0.021 4.5E-07 64.1 7.4 67 195-261 10-80 (488)
304 COG1748 LYS9 Saccharopine dehy 95.8 0.025 5.4E-07 61.3 7.7 87 198-290 2-102 (389)
305 TIGR02356 adenyl_thiF thiazole 95.8 0.02 4.2E-07 56.7 6.4 37 193-229 17-54 (202)
306 PRK13814 pyrB aspartate carbam 95.7 0.088 1.9E-06 55.6 11.4 63 195-257 155-223 (310)
307 cd00650 LDH_MDH_like NAD-depen 95.7 0.022 4.8E-07 58.6 6.7 112 200-313 1-148 (263)
308 PLN02342 ornithine carbamoyltr 95.7 0.19 4E-06 54.0 13.9 130 137-287 155-307 (348)
309 cd04905 ACT_CM-PDT C-terminal 95.7 0.037 7.9E-07 46.2 6.6 69 528-598 3-76 (80)
310 COG0026 PurK Phosphoribosylami 95.6 0.025 5.4E-07 60.3 6.8 61 197-257 1-68 (375)
311 PRK11064 wecC UDP-N-acetyl-D-m 95.6 0.029 6.3E-07 61.7 7.7 71 192-262 315-397 (415)
312 PRK08300 acetaldehyde dehydrog 95.6 0.035 7.7E-07 58.2 7.9 86 197-287 4-101 (302)
313 PRK11891 aspartate carbamoyltr 95.6 0.15 3.2E-06 56.1 13.0 105 138-259 198-316 (429)
314 PRK14804 ornithine carbamoyltr 95.6 0.19 4E-06 53.2 13.3 100 140-259 115-226 (311)
315 COG0569 TrkA K+ transport syst 95.6 0.018 3.9E-07 58.0 5.4 33 198-230 1-33 (225)
316 TIGR00655 PurU formyltetrahydr 95.6 0.015 3.3E-07 60.5 4.9 50 528-577 2-51 (280)
317 PRK02102 ornithine carbamoyltr 95.6 0.14 3E-06 54.6 12.3 94 194-287 152-273 (331)
318 PRK00048 dihydrodipicolinate r 95.5 0.026 5.6E-07 58.0 6.4 63 198-260 2-69 (257)
319 PRK13010 purU formyltetrahydro 95.5 0.022 4.8E-07 59.5 6.0 50 526-575 9-58 (289)
320 TIGR03316 ygeW probable carbam 95.5 0.25 5.3E-06 53.3 13.9 65 194-258 167-252 (357)
321 PRK12562 ornithine carbamoyltr 95.5 0.22 4.9E-06 53.1 13.4 128 141-287 119-275 (334)
322 TIGR03215 ac_ald_DH_ac acetald 95.4 0.056 1.2E-06 56.4 8.4 85 198-287 2-95 (285)
323 PRK15182 Vi polysaccharide bio 95.4 0.073 1.6E-06 58.8 9.8 95 192-291 309-416 (425)
324 TIGR01809 Shik-DH-AROM shikima 95.4 0.053 1.2E-06 56.5 8.3 69 194-262 122-201 (282)
325 PRK01390 murD UDP-N-acetylmura 95.4 0.035 7.5E-07 61.7 7.1 64 194-257 6-71 (460)
326 COG1648 CysG Siroheme synthase 95.4 0.032 6.9E-07 55.7 6.1 90 192-287 7-103 (210)
327 COG5322 Predicted dehydrogenas 95.3 0.07 1.5E-06 54.5 8.3 113 167-295 148-269 (351)
328 COG0281 SfcA Malic enzyme [Ene 95.3 0.67 1.4E-05 50.5 16.1 199 142-377 165-386 (432)
329 cd04900 ACT_UUR-like_1 ACT dom 95.2 0.074 1.6E-06 43.6 7.0 61 527-588 2-67 (73)
330 COG0334 GdhA Glutamate dehydro 95.2 0.096 2.1E-06 56.8 9.7 95 192-292 202-317 (411)
331 cd05312 NAD_bind_1_malic_enz N 95.2 0.53 1.2E-05 48.9 14.7 184 158-363 4-224 (279)
332 PF01113 DapB_N: Dihydrodipico 95.2 0.021 4.6E-07 52.0 4.0 61 199-259 2-75 (124)
333 cd00762 NAD_bind_malic_enz NAD 95.2 0.64 1.4E-05 47.6 15.0 182 158-361 4-223 (254)
334 PTZ00082 L-lactate dehydrogena 95.2 0.048 1E-06 57.9 7.2 65 195-260 4-83 (321)
335 cd05292 LDH_2 A subgroup of L- 95.1 0.038 8.3E-07 58.3 6.3 64 198-262 1-78 (308)
336 PRK14106 murD UDP-N-acetylmura 95.1 0.054 1.2E-06 59.8 7.6 70 194-263 2-80 (450)
337 COG1707 ACT domain-containing 95.1 0.046 1E-06 51.7 5.8 69 529-597 5-74 (218)
338 cd00300 LDH_like L-lactate deh 95.1 0.07 1.5E-06 56.1 8.0 87 200-287 1-115 (300)
339 PRK06270 homoserine dehydrogen 95.1 0.087 1.9E-06 56.5 8.8 107 198-304 3-143 (341)
340 KOG0023 Alcohol dehydrogenase, 95.1 0.046 1E-06 57.2 6.3 46 196-241 181-228 (360)
341 COG0771 MurD UDP-N-acetylmuram 95.0 0.043 9.3E-07 60.6 6.5 122 195-317 5-156 (448)
342 cd04873 ACT_UUR-ACR-like ACT d 95.0 0.075 1.6E-06 42.3 6.3 59 528-588 2-64 (70)
343 cd00757 ThiF_MoeB_HesA_family 95.0 0.028 6E-07 56.7 4.6 38 193-230 17-55 (228)
344 PRK07232 bifunctional malic en 95.0 1.1 2.4E-05 52.8 18.1 141 143-310 152-307 (752)
345 PRK11579 putative oxidoreducta 95.0 0.054 1.2E-06 57.9 7.0 63 198-261 5-74 (346)
346 cd05293 LDH_1 A subgroup of L- 95.0 0.1 2.3E-06 55.2 9.0 89 198-287 4-120 (312)
347 cd04928 ACT_TyrKc Uncharacteri 95.0 0.078 1.7E-06 43.3 6.2 48 527-575 2-49 (68)
348 PRK12548 shikimate 5-dehydroge 94.9 0.081 1.8E-06 55.3 8.0 37 194-230 123-160 (289)
349 PRK00421 murC UDP-N-acetylmura 94.9 0.061 1.3E-06 59.8 7.4 109 195-303 5-131 (461)
350 PRK00141 murD UDP-N-acetylmura 94.9 0.059 1.3E-06 60.3 7.2 65 194-258 12-81 (473)
351 PLN02520 bifunctional 3-dehydr 94.9 0.09 2E-06 59.7 8.7 38 193-230 375-412 (529)
352 PRK02006 murD UDP-N-acetylmura 94.9 0.06 1.3E-06 60.5 7.3 64 195-258 5-76 (498)
353 PRK02472 murD UDP-N-acetylmura 94.8 0.071 1.5E-06 58.8 7.7 110 194-303 2-132 (447)
354 PRK00066 ldh L-lactate dehydro 94.8 0.061 1.3E-06 57.0 6.8 65 196-260 5-82 (315)
355 COG1004 Ugd Predicted UDP-gluc 94.8 0.079 1.7E-06 57.1 7.5 66 195-260 308-385 (414)
356 PTZ00079 NADP-specific glutama 94.8 0.19 4.1E-06 55.6 10.5 108 192-306 232-370 (454)
357 PRK09496 trkA potassium transp 94.8 0.042 9.2E-07 60.6 5.7 66 198-263 1-77 (453)
358 PF02254 TrkA_N: TrkA-N domain 94.7 0.062 1.3E-06 47.6 5.6 83 200-284 1-93 (116)
359 PRK06019 phosphoribosylaminoim 94.7 0.061 1.3E-06 58.2 6.7 61 197-257 2-69 (372)
360 PRK04523 N-acetylornithine car 94.7 0.76 1.6E-05 49.2 14.7 99 139-259 132-252 (335)
361 cd02116 ACT ACT domains are co 94.6 0.086 1.9E-06 38.4 5.4 57 530-586 2-59 (60)
362 cd04925 ACT_ACR_2 ACT domain-c 94.6 0.11 2.5E-06 42.7 6.5 58 529-588 3-66 (74)
363 COG0788 PurU Formyltetrahydrof 94.6 0.045 9.8E-07 55.7 4.8 55 525-579 6-60 (287)
364 PRK09880 L-idonate 5-dehydroge 94.6 0.11 2.4E-06 55.1 8.2 46 196-241 169-216 (343)
365 cd01339 LDH-like_MDH L-lactate 94.6 0.054 1.2E-06 56.8 5.7 60 200-260 1-75 (300)
366 cd04899 ACT_ACR-UUR-like_2 C-t 94.6 0.12 2.5E-06 41.4 6.4 59 528-588 2-64 (70)
367 TIGR02964 xanthine_xdhC xanthi 94.6 0.16 3.6E-06 51.9 8.9 84 198-302 101-184 (246)
368 PRK00436 argC N-acetyl-gamma-g 94.5 0.068 1.5E-06 57.3 6.4 92 198-294 3-106 (343)
369 PRK12475 thiamine/molybdopteri 94.5 0.077 1.7E-06 56.8 6.6 38 193-230 20-58 (338)
370 PF00056 Ldh_1_N: lactate/mala 94.5 0.043 9.3E-07 51.2 4.0 63 198-260 1-78 (141)
371 cd04880 ACT_AAAH-PDT-like ACT 94.4 0.096 2.1E-06 43.0 5.7 59 529-588 2-66 (75)
372 PRK08192 aspartate carbamoyltr 94.4 0.6 1.3E-05 50.0 13.1 66 192-257 154-232 (338)
373 KOG2304 3-hydroxyacyl-CoA dehy 94.4 0.022 4.8E-07 56.7 2.0 132 196-337 10-173 (298)
374 PRK12749 quinate/shikimate deh 94.4 0.16 3.4E-06 53.2 8.5 70 193-262 120-207 (288)
375 PRK03659 glutathione-regulated 94.3 0.084 1.8E-06 60.9 7.0 92 197-290 400-501 (601)
376 PRK12862 malic enzyme; Reviewe 94.3 1.7 3.6E-05 51.6 17.6 156 144-338 161-333 (763)
377 PRK10669 putative cation:proto 94.3 0.067 1.4E-06 61.1 6.1 71 198-268 418-498 (558)
378 PLN02968 Probable N-acetyl-gam 94.3 0.077 1.7E-06 57.7 6.1 98 195-298 36-145 (381)
379 cd08230 glucose_DH Glucose deh 94.2 0.12 2.6E-06 55.0 7.4 46 196-241 172-221 (355)
380 PRK08306 dipicolinate synthase 94.2 0.16 3.5E-06 53.3 8.2 91 196-289 1-102 (296)
381 PRK01438 murD UDP-N-acetylmura 94.2 0.11 2.4E-06 58.0 7.4 72 192-263 11-90 (480)
382 PRK06027 purU formyltetrahydro 94.2 0.049 1.1E-06 56.9 4.2 51 526-576 6-56 (286)
383 KOG2653 6-phosphogluconate deh 94.1 0.67 1.4E-05 49.3 12.3 149 198-358 7-165 (487)
384 PRK07200 aspartate/ornithine c 94.1 0.78 1.7E-05 50.1 13.4 65 194-258 184-269 (395)
385 PRK05690 molybdopterin biosynt 94.1 0.049 1.1E-06 55.6 3.9 38 193-230 28-66 (245)
386 cd05297 GH4_alpha_glucosidase_ 94.0 0.089 1.9E-06 58.0 6.1 64 198-261 1-84 (423)
387 PRK13011 formyltetrahydrofolat 94.0 0.12 2.6E-06 54.0 6.7 52 526-577 7-58 (286)
388 COG3288 PntA NAD/NADP transhyd 94.0 0.077 1.7E-06 55.2 5.0 98 192-290 159-286 (356)
389 PRK10637 cysG siroheme synthas 93.9 0.12 2.7E-06 57.5 7.0 91 192-287 7-103 (457)
390 PRK05708 2-dehydropantoate 2-r 93.9 0.22 4.7E-06 52.5 8.5 109 198-309 3-125 (305)
391 PRK11589 gcvR glycine cleavage 93.9 0.14 3E-06 50.4 6.4 53 527-579 96-152 (190)
392 COG0440 IlvH Acetolactate synt 93.8 0.19 4.2E-06 47.8 7.0 72 525-596 3-76 (163)
393 COG0673 MviM Predicted dehydro 93.8 0.14 3E-06 54.0 6.9 64 198-261 4-77 (342)
394 PLN02819 lysine-ketoglutarate 93.8 0.18 3.8E-06 61.2 8.4 66 196-261 568-658 (1042)
395 PRK05562 precorrin-2 dehydroge 93.7 0.15 3.2E-06 51.3 6.5 90 192-286 20-115 (223)
396 PF13380 CoA_binding_2: CoA bi 93.7 0.13 2.8E-06 46.3 5.5 98 198-306 1-103 (116)
397 PRK04148 hypothetical protein; 93.7 0.15 3.3E-06 47.2 6.0 64 196-260 16-86 (134)
398 PRK12861 malic enzyme; Reviewe 93.6 2.1 4.5E-05 50.5 16.5 120 144-291 157-292 (764)
399 PLN02602 lactate dehydrogenase 93.6 0.31 6.6E-06 52.5 9.1 89 198-287 38-154 (350)
400 PRK13376 pyrB bifunctional asp 93.6 0.86 1.9E-05 51.5 12.9 61 194-254 171-244 (525)
401 PRK04308 murD UDP-N-acetylmura 93.6 0.15 3.4E-06 56.3 7.1 68 195-262 3-78 (445)
402 PRK07688 thiamine/molybdopteri 93.6 0.14 3E-06 54.8 6.5 38 193-230 20-58 (339)
403 PRK03803 murD UDP-N-acetylmura 93.6 0.16 3.5E-06 56.2 7.2 107 197-303 6-132 (448)
404 KOG0022 Alcohol dehydrogenase, 93.6 0.28 6E-06 51.5 8.2 46 196-241 192-239 (375)
405 TIGR00036 dapB dihydrodipicoli 93.5 0.15 3.2E-06 52.8 6.3 31 198-228 2-35 (266)
406 PF02629 CoA_binding: CoA bind 93.3 0.058 1.2E-06 46.8 2.5 72 198-270 4-80 (96)
407 TIGR03366 HpnZ_proposed putati 93.3 0.23 5.1E-06 51.1 7.4 45 196-240 120-166 (280)
408 COG0169 AroE Shikimate 5-dehyd 93.3 0.24 5.2E-06 51.7 7.4 96 193-291 122-230 (283)
409 PRK14027 quinate/shikimate deh 93.2 0.32 6.9E-06 50.8 8.1 69 194-262 124-205 (283)
410 PRK04690 murD UDP-N-acetylmura 93.2 0.21 4.5E-06 55.8 7.2 109 195-303 6-139 (468)
411 TIGR02355 moeB molybdopterin s 93.1 0.1 2.3E-06 53.1 4.4 38 193-230 20-58 (240)
412 TIGR02822 adh_fam_2 zinc-bindi 93.1 0.25 5.3E-06 52.3 7.4 46 196-241 165-211 (329)
413 PF13478 XdhC_C: XdhC Rossmann 93.1 0.19 4.1E-06 46.7 5.7 80 200-304 1-80 (136)
414 PLN02948 phosphoribosylaminoim 93.0 0.24 5.3E-06 56.8 7.7 69 194-262 19-94 (577)
415 PRK08644 thiamine biosynthesis 93.0 0.3 6.6E-06 48.7 7.5 37 193-229 24-61 (212)
416 PRK05086 malate dehydrogenase; 93.0 0.48 1E-05 50.2 9.3 64 198-261 1-79 (312)
417 TIGR01851 argC_other N-acetyl- 92.8 0.28 6E-06 51.8 7.1 76 199-287 3-80 (310)
418 PRK10206 putative oxidoreducta 92.7 0.24 5.3E-06 53.0 6.7 64 199-262 3-75 (344)
419 PF03447 NAD_binding_3: Homose 92.7 0.13 2.7E-06 46.0 3.9 95 204-303 1-109 (117)
420 PRK14805 ornithine carbamoyltr 92.7 1.8 4E-05 45.6 13.1 65 194-259 144-222 (302)
421 TIGR01761 thiaz-red thiazoliny 92.7 0.35 7.6E-06 51.9 7.8 63 198-261 4-72 (343)
422 PRK03806 murD UDP-N-acetylmura 92.6 0.3 6.5E-06 53.8 7.5 108 195-303 4-129 (438)
423 PRK03815 murD UDP-N-acetylmura 92.6 0.27 5.7E-06 53.9 6.9 104 198-303 1-113 (401)
424 PRK03562 glutathione-regulated 92.6 0.24 5.2E-06 57.3 6.9 88 197-286 400-497 (621)
425 cd01486 Apg7 Apg7 is an E1-lik 92.5 0.21 4.6E-06 52.4 5.7 85 199-287 1-140 (307)
426 PF03435 Saccharop_dh: Sacchar 92.5 0.18 3.8E-06 54.7 5.3 62 200-261 1-77 (386)
427 cd05294 LDH-like_MDH_nadp A la 92.4 0.32 6.8E-06 51.4 7.0 63 198-261 1-82 (309)
428 TIGR01161 purK phosphoribosyla 92.4 0.29 6.4E-06 52.3 6.9 60 199-258 1-67 (352)
429 cd04927 ACT_ACR-like_2 Second 92.4 0.31 6.7E-06 40.5 5.5 56 531-587 5-64 (76)
430 PRK01368 murD UDP-N-acetylmura 92.4 0.34 7.4E-06 53.9 7.5 107 196-303 5-128 (454)
431 PRK07877 hypothetical protein; 92.3 0.18 4E-06 59.0 5.5 97 193-293 103-235 (722)
432 PF13460 NAD_binding_10: NADH( 92.3 0.2 4.4E-06 47.6 5.0 63 200-263 1-72 (183)
433 COG1893 ApbA Ketopantoate redu 92.3 0.28 6E-06 51.8 6.4 139 198-340 1-153 (307)
434 PRK08762 molybdopterin biosynt 92.3 0.37 8E-06 52.3 7.5 75 138-229 93-168 (376)
435 PRK05600 thiamine biosynthesis 92.3 0.12 2.7E-06 55.9 3.8 52 176-229 22-74 (370)
436 cd05188 MDR Medium chain reduc 92.3 0.91 2E-05 45.3 9.9 89 196-289 134-234 (271)
437 PRK10872 relA (p)ppGpp synthet 92.3 0.32 6.9E-06 57.1 7.3 71 528-598 668-741 (743)
438 TIGR01087 murD UDP-N-acetylmur 92.2 0.6 1.3E-05 51.4 9.2 105 199-303 1-126 (433)
439 PLN02586 probable cinnamyl alc 92.2 0.51 1.1E-05 50.6 8.5 45 196-240 183-229 (360)
440 TIGR01532 E4PD_g-proteo D-eryt 92.2 0.35 7.5E-06 51.5 7.0 30 199-228 1-34 (325)
441 PRK08223 hypothetical protein; 92.1 0.24 5.1E-06 51.8 5.5 38 193-230 23-61 (287)
442 TIGR01381 E1_like_apg7 E1-like 92.1 0.37 8.1E-06 55.3 7.4 127 144-287 296-480 (664)
443 COG3830 ACT domain-containing 92.0 0.075 1.6E-06 45.5 1.3 30 531-560 8-37 (90)
444 COG2716 GcvR Glycine cleavage 92.0 0.29 6.2E-06 46.9 5.3 34 531-564 97-130 (176)
445 PTZ00325 malate dehydrogenase; 91.9 0.34 7.4E-06 51.5 6.5 68 194-261 5-86 (321)
446 PRK09496 trkA potassium transp 91.9 0.32 6.9E-06 53.6 6.6 67 195-261 229-307 (453)
447 PRK06392 homoserine dehydrogen 91.9 0.71 1.5E-05 49.2 8.9 105 199-304 2-134 (326)
448 COG1063 Tdh Threonine dehydrog 91.8 0.54 1.2E-05 50.5 8.1 84 199-287 171-269 (350)
449 PRK11863 N-acetyl-gamma-glutam 91.8 0.31 6.7E-06 51.6 6.0 76 198-287 3-81 (313)
450 PRK05597 molybdopterin biosynt 91.8 0.25 5.5E-06 53.2 5.5 38 193-230 24-62 (355)
451 CHL00194 ycf39 Ycf39; Provisio 91.8 0.38 8.3E-06 50.5 6.7 63 198-260 1-73 (317)
452 TIGR03201 dearomat_had 6-hydro 91.7 0.47 1E-05 50.4 7.4 45 196-240 166-211 (349)
453 COG0078 ArgF Ornithine carbamo 91.6 3.4 7.4E-05 43.3 13.1 93 195-287 151-270 (310)
454 PLN02178 cinnamyl-alcohol dehy 91.4 0.65 1.4E-05 50.2 8.2 45 196-240 178-224 (375)
455 PF05368 NmrA: NmrA-like famil 91.3 0.35 7.5E-06 48.2 5.6 63 200-262 1-75 (233)
456 cd04895 ACT_ACR_1 ACT domain-c 91.3 0.73 1.6E-05 38.1 6.4 58 529-588 4-66 (72)
457 cd04896 ACT_ACR-like_3 ACT dom 91.2 0.51 1.1E-05 39.3 5.5 58 530-587 4-65 (75)
458 cd08281 liver_ADH_like1 Zinc-d 91.2 0.6 1.3E-05 50.1 7.6 45 196-240 191-237 (371)
459 cd08239 THR_DH_like L-threonin 91.1 0.57 1.2E-05 49.3 7.3 44 197-240 164-209 (339)
460 PRK11589 gcvR glycine cleavage 91.1 0.24 5.3E-06 48.6 4.1 44 530-573 12-55 (190)
461 KOG4230 C1-tetrahydrofolate sy 91.0 2.3 5.1E-05 47.8 11.8 138 191-362 156-294 (935)
462 PLN02272 glyceraldehyde-3-phos 91.0 0.32 7E-06 53.3 5.3 36 198-233 86-123 (421)
463 COG0540 PyrB Aspartate carbamo 90.9 1.4 3.1E-05 46.2 9.6 63 195-257 156-230 (316)
464 cd05283 CAD1 Cinnamyl alcohol 90.9 0.9 2E-05 47.9 8.5 45 196-240 169-214 (337)
465 cd01487 E1_ThiF_like E1_ThiF_l 90.8 0.59 1.3E-05 45.1 6.4 32 199-230 1-33 (174)
466 KOG2663 Acetolactate synthase, 90.8 0.23 5.1E-06 50.0 3.6 71 525-595 76-148 (309)
467 TIGR01772 MDH_euk_gproteo mala 90.7 0.68 1.5E-05 49.1 7.3 89 199-287 1-116 (312)
468 PRK12550 shikimate 5-dehydroge 90.7 0.6 1.3E-05 48.5 6.8 64 197-262 122-189 (272)
469 cd01336 MDH_cytoplasmic_cytoso 90.6 0.44 9.6E-06 50.7 5.8 63 199-261 4-88 (325)
470 PRK07411 hypothetical protein; 90.5 0.29 6.4E-06 53.4 4.5 38 193-230 34-72 (390)
471 cd01337 MDH_glyoxysomal_mitoch 90.5 0.68 1.5E-05 49.0 7.0 91 198-288 1-118 (310)
472 cd01338 MDH_choloroplast_like 90.5 0.36 7.8E-06 51.4 5.0 64 198-261 3-88 (322)
473 TIGR02853 spore_dpaA dipicolin 90.4 0.86 1.9E-05 47.7 7.7 90 197-289 1-101 (287)
474 PLN00106 malate dehydrogenase 90.3 0.57 1.2E-05 49.9 6.3 65 197-261 18-96 (323)
475 cd05290 LDH_3 A subgroup of L- 90.2 0.54 1.2E-05 49.7 6.0 63 199-261 1-78 (307)
476 PRK14573 bifunctional D-alanyl 90.2 0.63 1.4E-05 55.6 7.3 106 198-303 5-128 (809)
477 cd00704 MDH Malate dehydrogena 90.2 1.5 3.2E-05 46.8 9.3 96 199-296 2-133 (323)
478 cd04906 ACT_ThrD-I_1 First of 90.2 0.69 1.5E-05 39.1 5.6 58 529-588 4-64 (85)
479 PRK15076 alpha-galactosidase; 90.2 0.96 2.1E-05 50.1 8.2 112 198-310 2-169 (431)
480 cd08237 ribitol-5-phosphate_DH 90.1 1.1 2.4E-05 47.6 8.4 35 196-230 163-199 (341)
481 PRK08664 aspartate-semialdehyd 90.1 0.53 1.2E-05 50.6 6.0 83 198-287 4-107 (349)
482 PRK02705 murD UDP-N-acetylmura 90.1 0.82 1.8E-05 50.6 7.7 105 199-303 2-133 (459)
483 PRK11092 bifunctional (p)ppGpp 90.1 0.72 1.6E-05 54.0 7.4 70 528-598 628-700 (702)
484 PRK15057 UDP-glucose 6-dehydro 90.0 0.81 1.8E-05 49.9 7.3 63 195-259 294-367 (388)
485 PRK12769 putative oxidoreducta 89.9 0.89 1.9E-05 53.0 8.1 36 195-230 325-360 (654)
486 PLN02740 Alcohol dehydrogenase 89.9 1 2.2E-05 48.6 8.0 45 196-240 198-244 (381)
487 PRK04663 murD UDP-N-acetylmura 89.9 0.85 1.8E-05 50.4 7.5 109 195-303 4-132 (438)
488 COG4007 Predicted dehydrogenas 89.9 1.5 3.2E-05 44.9 8.3 83 209-292 33-122 (340)
489 PRK06382 threonine dehydratase 89.8 0.48 1E-05 52.0 5.4 69 521-589 325-399 (406)
490 TIGR03451 mycoS_dep_FDH mycoth 89.7 1 2.2E-05 48.1 7.7 45 196-240 176-222 (358)
491 TIGR01082 murC UDP-N-acetylmur 89.7 0.7 1.5E-05 51.2 6.7 104 200-303 2-123 (448)
492 PF00899 ThiF: ThiF family; I 89.6 0.33 7.1E-06 44.5 3.4 35 196-230 1-36 (135)
493 PRK12809 putative oxidoreducta 89.5 0.91 2E-05 52.8 7.6 36 195-230 308-343 (639)
494 TIGR01759 MalateDH-SF1 malate 89.2 0.54 1.2E-05 50.1 5.1 63 199-261 5-89 (323)
495 PRK07878 molybdopterin biosynt 89.1 0.44 9.6E-06 52.1 4.5 37 193-229 38-75 (392)
496 TIGR01202 bchC 2-desacetyl-2-h 89.1 1.1 2.4E-05 46.8 7.4 35 196-230 144-179 (308)
497 PF04016 DUF364: Domain of unk 89.0 0.32 6.8E-06 45.8 2.8 85 195-288 9-96 (147)
498 PRK08374 homoserine dehydrogen 88.8 1.4 3E-05 47.1 8.0 101 198-303 3-139 (336)
499 PRK05442 malate dehydrogenase; 88.8 0.61 1.3E-05 49.7 5.2 63 198-260 5-89 (326)
500 PRK08040 putative semialdehyde 88.8 0.51 1.1E-05 50.5 4.6 86 196-287 3-97 (336)
No 1
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=7.9e-110 Score=926.06 Aligned_cols=522 Identities=47% Similarity=0.746 Sum_probs=492.6
Q ss_pred eEEEecCCCHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 60 TVLIAEKLGQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
||++++++.++.++.|++. .++.+....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 5889999999999988765 3666555567889999999999999998889999999987 6999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+||+|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|.||+++|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL 297 (600)
|||+|++|||+.+.+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999876666677787765 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 007512 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAE 377 (600)
Q Consensus 298 ~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~ 377 (600)
++||++|+|+||+||||+.||+ .++|||++||+++|||+|++|.|++++++..+++|+.+|++|+.+.+.||.|.++.+
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcC
Q 007512 378 VLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRG 457 (600)
Q Consensus 378 ~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~G 457 (600)
.++.++||+.||+|||++++||+++ .+++++++|+|||+ . +++|++++|+++|+|+...++++|++||+.+|+++|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4 599999999999999888776799999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecCC
Q 007512 458 LRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVDQ 536 (600)
Q Consensus 458 I~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~ 536 (600)
|++.|.+.+.+ ..|||++++++++ ++++++|.|+++ ||+++|++||||+|+++|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~~----------~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVTG----------DSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEEe----------CCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999887644 3899999999984 678999999655 579999999999999999999999999999
Q ss_pred CCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 537 PGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 537 pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
||+|+.|+++|++++|||++|+++|..+|++|+|+|++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=9.3e-109 Score=917.66 Aligned_cols=523 Identities=49% Similarity=0.761 Sum_probs=492.6
Q ss_pred CeEEEecCCCHhHHHHhccc--CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 59 PTVLIAEKLGQAGLDLLNEF--ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~--~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
|||++++++.+..++.|++. .++.+....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 47999999999998988875 3555444567889999999999999988789999999987 69999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|.||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHH
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~a 296 (600)
++|||+|++|||+.+.+.+...|+..+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987666667778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 007512 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPA 376 (600)
Q Consensus 297 L~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~ 376 (600)
|++||++|+|+||++|||+.||++ ++|||++||+++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.+++
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhc
Q 007512 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQR 456 (600)
Q Consensus 377 ~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~ 456 (600)
+..++++||+.+|+|||++++||+++ .+++++++|+|||+ .++. +++++|+++|+|+...++++|++||+.+|+++
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~-~~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDT-EPLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-cccc-cHHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 7776 49999999999988776669999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecC
Q 007512 457 GLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVD 535 (600)
Q Consensus 457 GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D 535 (600)
||+++|.+.+.+ ..|||++++++++ ++++++|.|+++ ||.++|++||||+|+++|++|+|++.|+|
T Consensus 395 GI~~~~~~~~~~---~~hpNtv~i~l~~----------~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEES---PDYSNLITVTVTT----------DDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCC---CCCCCEEEEEEEe----------CCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 999999888644 3899999999984 667999999655 57899999999999999999999999999
Q ss_pred CCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 536 QPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 536 ~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+||+|+.|+++|++++|||++|+++|..+|+.|+|+|++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-86 Score=669.56 Aligned_cols=396 Identities=62% Similarity=0.881 Sum_probs=381.2
Q ss_pred eEEEecCCCHhHHHHhcccC-cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 60 TVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
+||+++++++.++++|++.+ +|++.+.++.||+...++++|++++|+.|++|+++|+.+..+||+|+|+|+|+||+|++
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~ 87 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLK 87 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChh
Confidence 89999999999999999987 89999999999999999999999999999999999996667999999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+|.+|+.++|||+++++++++|+++++..+||+|+|++..+.|.+|+|||+||+|+|+||+.+|+++++
T Consensus 88 AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~ 167 (406)
T KOG0068|consen 88 AATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKA 167 (406)
T ss_pred hHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
+||+|++|||..+.+.+.+.|++.++++|+++.||||++|+|++|+|++|+|.+.|++||+|+.+||++||++||+.+|+
T Consensus 168 ~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv 247 (406)
T KOG0068|consen 168 MGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALV 247 (406)
T ss_pred cCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCceEEEEeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 007512 299 RALDSGRVAQAALDVFTEEPPPA--DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPA 376 (600)
Q Consensus 299 ~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~ 376 (600)
+||++|+++||++|||+.||+.. ++.|..+|||++|||+|++|.|+|.+++.++++++.+|++| .....||.|.++.
T Consensus 248 ~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v~~ 326 (406)
T KOG0068|consen 248 RALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEVAL 326 (406)
T ss_pred HHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhhhh
Confidence 99999999999999999999754 78999999999999999999999999999999999999999 6789999999999
Q ss_pred hhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhc
Q 007512 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQR 456 (600)
Q Consensus 377 ~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~ 456 (600)
+...+++||+.+++++||++.|++.|.++...+..+|.+.- +.+++++.+.+.+|+.+++.+-.+|++|+..++++|
T Consensus 327 ~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k~r 403 (406)
T KOG0068|consen 327 ESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAKQR 403 (406)
T ss_pred hhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhhhh
Confidence 99999999999999999999999998767777777776543 478999999999999999999899999999999999
Q ss_pred Cce
Q 007512 457 GLR 459 (600)
Q Consensus 457 GI~ 459 (600)
|++
T Consensus 404 ~l~ 406 (406)
T KOG0068|consen 404 GLY 406 (406)
T ss_pred ccC
Confidence 974
No 4
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-74 Score=619.05 Aligned_cols=394 Identities=30% Similarity=0.455 Sum_probs=352.8
Q ss_pred CCCCCeEEEecCCCHhHHHHhccc-C-cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcc
Q 007512 55 ISSKPTVLIAEKLGQAGLDLLNEF-A-NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVG 131 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G 131 (600)
++.|+||++++.+.++..+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||||+++|+|
T Consensus 7 ~~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 85 (409)
T PRK11790 7 PKDKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIG 85 (409)
T ss_pred CCCCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECcee
Confidence 556789999999999988888765 3 55443 2356788989999999998888788999999987 699999999999
Q ss_pred cCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHH
Q 007512 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 132 ~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|.||+.
T Consensus 86 ~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~ 165 (409)
T PRK11790 86 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQ 165 (409)
T ss_pred cccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987656689999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|+++++|||+|++|||+... ...++.. .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+
T Consensus 166 vA~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 242 (409)
T PRK11790 166 LSVLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 (409)
T ss_pred HHHHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence 999999999999999986421 1123443 489999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPA----DSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~----~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
+||++||+++|++|+|+||++|||+.||++. ++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+.+.
T Consensus 243 ~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~ 322 (409)
T PRK11790 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTL 322 (409)
T ss_pred ccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 9999999999999999999999999999876 369999999999999999999999999999999999999988887
Q ss_pred ccccCCCCChhhhhcccchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhh
Q 007512 367 TAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNL 446 (600)
Q Consensus 367 ~~vn~~~i~~~~~~~~~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~ 446 (600)
+.||.|
T Consensus 323 ~~vn~~-------------------------------------------------------------------------- 328 (409)
T PRK11790 323 SAVNFP-------------------------------------------------------------------------- 328 (409)
T ss_pred cceecc--------------------------------------------------------------------------
Confidence 777752
Q ss_pred ccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeecCc
Q 007512 447 VNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEG 526 (600)
Q Consensus 447 vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~ 526 (600)
.+ ..+ .. ...
T Consensus 329 ------------~~-----~~~----~~-------------------------------------------------~~~ 338 (409)
T PRK11790 329 ------------EV-----SLP----EH-------------------------------------------------PGG 338 (409)
T ss_pred ------------cc-----ccC----CC-------------------------------------------------CCC
Confidence 00 000 00 016
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|.|++.|+|+||+|++|+++|++++|||++|++.| +++.|+|+|++|++++++++++|+++++|.+++++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 78899999999999999999999999999999975 45899999999999999999999999999999876
No 5
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-71 Score=578.66 Aligned_cols=316 Identities=48% Similarity=0.713 Sum_probs=293.3
Q ss_pred CCCeEEEecCCCHhHHHHhcccC--cEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFA--NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
.++++++++.+.+..++.+.... ++......+.+++.+.+.++|++++ +.+++++++++.+ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 57899999999999999887642 3333455677888999999999999 8899999999997 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVAR 214 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~ 214 (600)
||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++++++|.|++..+.|.+|+|||+||||+|.||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 215 RAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 215 ~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
++++|||+|++|||+.+.+.+...++. ..+|+++|++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998866655555554 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 007512 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPM 373 (600)
Q Consensus 294 e~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~ 373 (600)
++||++||++|+|+||++|||+.||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 6665
Q ss_pred CCh
Q 007512 374 VPA 376 (600)
Q Consensus 374 i~~ 376 (600)
++.
T Consensus 318 v~~ 320 (324)
T COG0111 318 VDL 320 (324)
T ss_pred ccc
Confidence 543
No 6
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=3.1e-68 Score=558.75 Aligned_cols=312 Identities=30% Similarity=0.499 Sum_probs=288.6
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
+|||++++++.++..+.|++..++.... ..+.+++.+.+.++|++++++ .++++++++++ |+||+|++.|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 6899999999999889888766665432 235678888999999999864 58999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc---cccceeccCCEEEEEecChhHHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN---KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+. .+.|.+|+|||+||||+|.||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHhh-cCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAK-GLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~-~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|++++ +|||+|++||++.+.+.....++.++++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986554445667788899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVN 370 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn 370 (600)
+||++||++||++|+|+||+||||+.||++.++|||++||+++|||+|+.|.|++.++...+++|+.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999888
Q ss_pred C
Q 007512 371 A 371 (600)
Q Consensus 371 ~ 371 (600)
+
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 5
No 7
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6e-66 Score=539.30 Aligned_cols=314 Identities=38% Similarity=0.599 Sum_probs=289.9
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEEccCC-C-HhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNL-S-PEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~-~-~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
.|++++.+.++.++..+.|.+.+++...... + ..++.+..+++|++++...+++++++++++ |+||+|+..|+||||
T Consensus 1 mk~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~ 79 (324)
T COG1052 1 MKIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDN 79 (324)
T ss_pred CCcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCc
Confidence 3678999999999988888877666553322 1 126788899999999987788999999998 799999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc----ccceeccCCEEEEEecChhHH
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK----YVGVSLVGKTLAVLGFGKVGS 210 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktiGIIGlG~IG~ 210 (600)
||+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||+
T Consensus 80 vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~ 159 (324)
T COG1052 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQ 159 (324)
T ss_pred ccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998864 568899999999999999999
Q ss_pred HHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 211 EVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+|+++++|||+|++||++..++.....++.++++++++++||+|++|||++++|+|+||++.|++||+|++|||+|||+
T Consensus 160 avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~ 239 (324)
T COG1052 160 AVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG 239 (324)
T ss_pred HHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence 99999999999999999998755556666888899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER---VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n---vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
+||++||++||++|+|+|||+|||+.||.+.++||+..+| +++|||+|+.|.|++.+++..+++|+.+|++|+.+.+
T Consensus 240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~ 319 (324)
T COG1052 240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPN 319 (324)
T ss_pred ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999877899998777 9999999999999999999999999999999999988
Q ss_pred cccC
Q 007512 368 AVNA 371 (600)
Q Consensus 368 ~vn~ 371 (600)
.||+
T Consensus 320 ~v~~ 323 (324)
T COG1052 320 EVNP 323 (324)
T ss_pred CCCC
Confidence 8874
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-65 Score=535.48 Aligned_cols=298 Identities=28% Similarity=0.469 Sum_probs=271.6
Q ss_pred eEEEecC--CCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccCh
Q 007512 60 TVLIAEK--LGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDL 137 (600)
Q Consensus 60 ~ilv~~~--l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~ 137 (600)
||++++. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 5777776 677778888876666544344578888999999999876 568999999997 699999999999999999
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccc------cceeccCCEEEEEecChhHHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY------VGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktiGIIGlG~IG~~ 211 (600)
++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|.||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i 291 (600)
+|+++++|||+|++|||+... ...++..+++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12456678999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH---ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 292 vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~---~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
||++||++||++|+|+ |++|||++||++.++|||.+ |||++|||+|++|.|+++++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999885
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=6.7e-65 Score=536.42 Aligned_cols=313 Identities=37% Similarity=0.638 Sum_probs=287.5
Q ss_pred CCeEEEecCCCHhHHHHhcccCcEEEcc---CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 58 KPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 58 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
||||++++.+.+...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 6899999999888888887765554332 246788889999999999987678999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc-------ccceeccCCEEEEEecCh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGK 207 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktiGIIGlG~ 207 (600)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|.
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999987544445567777799999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 007512 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAAT 367 (600)
Q Consensus 288 rg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~ 367 (600)
||+++|+++|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.++...+++|+.+|++|+.+.+
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999998888
Q ss_pred cccCC
Q 007512 368 AVNAP 372 (600)
Q Consensus 368 ~vn~~ 372 (600)
.||+.
T Consensus 320 ~v~~~ 324 (333)
T PRK13243 320 LVNRE 324 (333)
T ss_pred ccCHH
Confidence 88743
No 10
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=5.7e-64 Score=526.00 Aligned_cols=302 Identities=32% Similarity=0.482 Sum_probs=268.9
Q ss_pred eEEEecCC----CHhHHHHhccc-CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCc
Q 007512 60 TVLIAEKL----GQAGLDLLNEF-ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDN 134 (600)
Q Consensus 60 ~ilv~~~l----~~~~~~~l~~~-~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~ 134 (600)
||++++.. .+...+.|++. .++.+....+.+++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 57776552 23445566543 455554455678899999999998875 468999999987 699999999999999
Q ss_pred cChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc------ccceeccCCEEEEEecChh
Q 007512 135 VDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK------YVGVSLVGKTLAVLGFGKV 208 (600)
Q Consensus 135 iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktiGIIGlG~I 208 (600)
||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+.. +.+.+|+|||+||||+|.|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357999999999999999
Q ss_pred HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
|+.+|+++++|||+|++||++.... ....++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999864321 23456899999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 007512 289 GGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQ--HERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366 (600)
Q Consensus 289 g~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~--~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~ 366 (600)
|++||++||++||++|+|+||+||||+.||++.++|||. +||+++|||+|++|.|+++++...+++|+.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988999995 89999999999999999999999999999999999753
Q ss_pred ccc
Q 007512 367 TAV 369 (600)
Q Consensus 367 ~~v 369 (600)
+.|
T Consensus 314 ~~v 316 (317)
T PRK06487 314 RVV 316 (317)
T ss_pred cCC
Confidence 444
No 11
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=8.1e-63 Score=527.39 Aligned_cols=338 Identities=31% Similarity=0.425 Sum_probs=289.9
Q ss_pred CCCCCeEEEecCCCHh-HHHHhccc-CcEEEcc----CCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCC-CceEEE
Q 007512 55 ISSKPTVLIAEKLGQA-GLDLLNEF-ANVDCAY----NLSPEELCTKI-SLCDALIVRSGTKVNRDVFESSAG-RLKVVG 126 (600)
Q Consensus 55 ~~~~~~ilv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~~el~~~i-~~~d~li~~~~~~~~~~~l~~~~~-~Lk~I~ 126 (600)
+..|++|++++.+.++ .++.|++. .++.... .++.+++.+.+ .++|+++++..++++++++++++. +||+|+
T Consensus 12 ~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~ 91 (386)
T PLN02306 12 PNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFS 91 (386)
T ss_pred CCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEE
Confidence 5679999999999774 67888765 4665422 25788898887 579999998777899999999842 479999
Q ss_pred EcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc---ccceeccCCEEEEE
Q 007512 127 RAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVL 203 (600)
Q Consensus 127 ~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~---~~g~~l~gktiGII 203 (600)
+.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.++. ..|.+|.|||+|||
T Consensus 92 ~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIi 171 (386)
T PLN02306 92 NMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVI 171 (386)
T ss_pred ECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999986432 35789999999999
Q ss_pred ecChhHHHHHHHhh-cCCCEEEEECCCCChhHH---HHcC------------Cc-ccCHHHHhccCCEEEEecCCCcccc
Q 007512 204 GFGKVGSEVARRAK-GLGMHVIAHDPYAPADRA---RAIG------------VD-LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 204 GlG~IG~~vA~~l~-~~g~~V~~~d~~~~~~~a---~~~g------------~~-~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
|+|.||+.+|++++ +|||+|++|||+...+.. ...| +. ..+|++++++||+|++|+|+|++|+
T Consensus 172 G~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~ 251 (386)
T PLN02306 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTY 251 (386)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhh
Confidence 99999999999985 999999999998643211 1121 12 2489999999999999999999999
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~ 346 (600)
+||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+|++|.++++
T Consensus 252 ~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 252 HLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTRE 330 (386)
T ss_pred hhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCcccc--CCCCChh-hhhcccchHHHHHHHH
Q 007512 347 GVAIEIAEAVVGALKGELAATAVN--APMVPAE-VLTELKPFVELAEKLG 393 (600)
Q Consensus 347 ~~~~~~~~~l~~~l~g~~~~~~vn--~~~i~~~-~~~~~~p~~~la~~lG 393 (600)
++...+++|+.+|++|+.+.+.|| .+.+... --+..+|-+..+..+|
T Consensus 331 ~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
T PLN02306 331 GMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALG 380 (386)
T ss_pred HHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhC
Confidence 999999999999999999999999 3333321 1122345555444443
No 12
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-62 Score=514.17 Aligned_cols=272 Identities=30% Similarity=0.473 Sum_probs=251.4
Q ss_pred CCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHH
Q 007512 86 NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIAL 165 (600)
Q Consensus 86 ~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~l 165 (600)
..+++|+.+.++++|++++. .+++++++++++ |+||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45678899999999988774 568999999987 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCcccccc------ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC
Q 007512 166 LAAMARNVAQADASVKAGKWQRNK------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239 (600)
Q Consensus 166 ll~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g 239 (600)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997532 23579999999999999999999999999999999999764211 12
Q ss_pred CcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 240 ~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
..+.+|++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++||++||++||++|+|+||++|||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 007512 320 PADSKLV----QHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGE 363 (600)
Q Consensus 320 ~~~~~L~----~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~ 363 (600)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g 313 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG 313 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999998 4899999999999999999999999999999999875
No 13
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=1.7e-61 Score=512.74 Aligned_cols=309 Identities=27% Similarity=0.413 Sum_probs=274.4
Q ss_pred CCCCCCeEEEecCCCHhH----HHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcC
Q 007512 54 GISSKPTVLIAEKLGQAG----LDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAG 129 (600)
Q Consensus 54 ~~~~~~~ilv~~~l~~~~----~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g 129 (600)
+.+.|||||++.+..+.. .+.++....+. ....+.+|+.+.+.++|+++++ ..++++++++++ |+||||++.|
T Consensus 14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~ 90 (347)
T PLN02928 14 SDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQ-VDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFG 90 (347)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHhhcCCeeE-ecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECC
Confidence 366789999998777653 34444443332 2345678888999999998876 458999999987 6999999999
Q ss_pred cccCccChhHHHhCCceeecCCCC---ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC
Q 007512 130 VGIDNVDLAAATEFGCLVVNAPTA---NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG 206 (600)
Q Consensus 130 ~G~d~iD~~aa~~~GI~V~n~p~~---~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG 206 (600)
+|+||+|+++|.++||.|+|+|++ |+.+||||++++||+++|+++.+++.+++|.|.+ ..+.+|+|||+||||+|
T Consensus 91 ~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G 168 (347)
T PLN02928 91 VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYG 168 (347)
T ss_pred cccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCC
Confidence 999999999999999999999985 8899999999999999999999999999999975 35789999999999999
Q ss_pred hhHHHHHHHhhcCCCEEEEECCCCChhHHHH-------------cCCcccCHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 207 KVGSEVARRAKGLGMHVIAHDPYAPADRARA-------------IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 207 ~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
.||+.+|++|++|||+|++||++........ .+....+|++++++||+|++|+|+|++|+++|+++.
T Consensus 169 ~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~ 248 (347)
T PLN02928 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEF 248 (347)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHH
Confidence 9999999999999999999999753322111 112456899999999999999999999999999999
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~ 353 (600)
|++||+|++|||+|||++||++||++||++|+|+||+||||+.||+++++|||++||+++|||+|+.|.++++++...++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 007512 354 EAVVGALKGELAAT 367 (600)
Q Consensus 354 ~~l~~~l~g~~~~~ 367 (600)
+|+.+|++|++..+
T Consensus 329 ~nl~~~~~g~~~~~ 342 (347)
T PLN02928 329 DAALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHHCCCCCCc
Confidence 99999999987654
No 14
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-61 Score=514.44 Aligned_cols=294 Identities=27% Similarity=0.401 Sum_probs=267.1
Q ss_pred HHHHhcccC-cEEEcc--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCc
Q 007512 71 GLDLLNEFA-NVDCAY--NLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145 (600)
Q Consensus 71 ~~~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI 145 (600)
..++|++.+ ++.... ..+.+++.+.++++|++|+.. .+++++++++++ |+||||+++|+|+||||+++|+++||
T Consensus 67 ~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI 145 (386)
T PLN03139 67 IRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGL 145 (386)
T ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCe
Confidence 345666653 444433 235678899999999999863 357999999997 69999999999999999999999999
Q ss_pred eeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc--cccceeccCCEEEEEecChhHHHHHHHhhcCCCEE
Q 007512 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHV 223 (600)
Q Consensus 146 ~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V 223 (600)
.|+|+||+|+.+||||++++||++.|++.++++.+++|.|... ...+.+|.||||||||+|+||+.+|++|++|||+|
T Consensus 146 ~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V 225 (386)
T PLN03139 146 TVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNL 225 (386)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEE
Confidence 9999999999999999999999999999999999999999853 23578999999999999999999999999999999
Q ss_pred EEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 224 IAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 224 ~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
++||++. ..+...+.|+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|+++|
T Consensus 226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386)
T PLN03139 226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386)
T ss_pred EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence 9999985 4444556677654 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 007512 302 DSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365 (600)
Q Consensus 302 ~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~ 365 (600)
++|+|+||++|||++||++.++|||.+||+++|||+||.|.+++++++..+++|+.+|++|+..
T Consensus 306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999753
No 15
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-60 Score=509.00 Aligned_cols=295 Identities=28% Similarity=0.474 Sum_probs=268.8
Q ss_pred HHhcccC-cEEEcc--CCCHhHHhhhcCCceEEEEcC--CCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCcee
Q 007512 73 DLLNEFA-NVDCAY--NLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLV 147 (600)
Q Consensus 73 ~~l~~~~-~v~~~~--~~~~~el~~~i~~~d~li~~~--~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V 147 (600)
+.|++.+ ++.+.. ..+.+++.+.+.++|++|++. ..++++++++++ |+||||+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566653 555432 235688899999999999863 467999999997 6999999999999999999999999999
Q ss_pred ecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccc--ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE
Q 007512 148 VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK--YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225 (600)
Q Consensus 148 ~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~ 225 (600)
+|+|++|+.+||||++++||+++|++..+++.+++|.|.+.. ..+.+|+||||||||+|.||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 257899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 226 HDPYA-PADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 226 ~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
||++. +.+.....|+. ..++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+++|++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 44444556765 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007512 304 GRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATA 368 (600)
Q Consensus 304 g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~ 368 (600)
|+|+||++|||++||++.++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+++.+.
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999877654
No 16
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=2.8e-58 Score=486.08 Aligned_cols=311 Identities=26% Similarity=0.423 Sum_probs=275.5
Q ss_pred CCCeEEEecCCCHhHHHHhcccCcEEE--ccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCC--ceEEEEcCccc
Q 007512 57 SKPTVLIAEKLGQAGLDLLNEFANVDC--AYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR--LKVVGRAGVGI 132 (600)
Q Consensus 57 ~~~~ilv~~~l~~~~~~~l~~~~~v~~--~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~--Lk~I~~~g~G~ 132 (600)
.|++|+.+++.....++.+.+..++++ ......+|+.+.+.++|++++++.+++++++++++ |+ ||+|+++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~ 80 (332)
T PRK08605 2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGF 80 (332)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEccccc
Confidence 567889988888888887765444432 22223455668899999999988889999999998 45 99999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+|++++.+||||++++||+++|++...++.+++|.|... ...|++|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (332)
T PRK08605 81 DTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLA 160 (332)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988532 23588999999999999999999
Q ss_pred HHHHh-hcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 212 VARRA-KGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 212 vA~~l-~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
+|++| ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||
T Consensus 161 vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 161 VAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred HHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence 99999 789999999999864322 2234443 8999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhHhcCCceEEEEeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 007512 290 GVIDEEALVRALDSGRVAQAALDVFTEEP--PPADS-----------KLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356 (600)
Q Consensus 290 ~ivde~aL~~aL~~g~i~ga~lDv~~~EP--~~~~~-----------~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l 356 (600)
.++|+++|+++|++|+|+||++|||+.|| +|.++ +||.+||+++|||+|++|.|+++++...+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~ 318 (332)
T PRK08605 239 SLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDAT 318 (332)
T ss_pred cccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 34443 499999999999999999999999999999999
Q ss_pred HHHHcCCCCCcccc
Q 007512 357 VGALKGELAATAVN 370 (600)
Q Consensus 357 ~~~l~g~~~~~~vn 370 (600)
.+|++|+...+.+|
T Consensus 319 ~~~~~g~~~~~~~~ 332 (332)
T PRK08605 319 LEVLQTGTTRLRVN 332 (332)
T ss_pred HHHHcCCCCCCCcC
Confidence 99999999888775
No 17
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=4.2e-58 Score=483.65 Aligned_cols=308 Identities=24% Similarity=0.367 Sum_probs=268.1
Q ss_pred CeEEEecCCCHh---HHHHhcccC-cEEEc-cCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccC-CCceEEEEcCccc
Q 007512 59 PTVLIAEKLGQA---GLDLLNEFA-NVDCA-YNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA-GRLKVVGRAGVGI 132 (600)
Q Consensus 59 ~~ilv~~~l~~~---~~~~l~~~~-~v~~~-~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~-~~Lk~I~~~g~G~ 132 (600)
+||++.+.-..+ ..+++++.. ++... ..++ +|+.+.+.++|+++++..++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLS-SATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCC-HHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 788877654332 334455543 44442 2344 445889999999998866789999999984 3899999999999
Q ss_pred CccChhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHH
Q 007512 133 DNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSE 211 (600)
Q Consensus 133 d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~ 211 (600)
||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|... ...|++|+|++|||||+|.||++
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976432 24578999999999999999999
Q ss_pred HHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCc
Q 007512 212 VARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 212 vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+|++|++|||+|++||++...... .... .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||.
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~~---~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDLD---FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhhh---hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 999999999999999988632211 1223 379999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhHhcCCceEEEEeccCCCCCC-------------CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 007512 291 VIDEEALVRALDSGRVAQAALDVFTEEPPP-------------ADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357 (600)
Q Consensus 291 ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-------------~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~ 357 (600)
++|+++|+++|++|+|+||+||||+.||++ ..+|||++|||++|||+|+.|.|+++++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999962 1247999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 007512 358 GALKGELAATAVN 370 (600)
Q Consensus 358 ~~l~g~~~~~~vn 370 (600)
++++|+...+.+|
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999888776
No 18
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=5.1e-55 Score=464.42 Aligned_cols=273 Identities=29% Similarity=0.445 Sum_probs=244.6
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccC--CCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
|||++.+.++ ...+.+++++++.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 5799988774 66778887778876543 2333 4789999999998999999996 4 59999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999985 24589999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcc----ccccccHhHhccCCCceEEEEccCCccc
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPA----TSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~----t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
++|||+|++|||..... .....+.+|++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999864221 1223467899999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 007512 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 293 de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~ 361 (600)
|++||+++|++|++.||+||||++||+ .+++|+.+++ ++|||+||+|.|++.+...++++++.+++.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 899999999999999999999999999984
No 19
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=4.8e-55 Score=452.44 Aligned_cols=282 Identities=33% Similarity=0.543 Sum_probs=256.4
Q ss_pred CCHhHHhhhcCCceEEEEcCCC-CCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCChHHHHHHHHHH
Q 007512 87 LSPEELCTKISLCDALIVRSGT-KVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIAL 165 (600)
Q Consensus 87 ~~~~el~~~i~~~d~li~~~~~-~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~~~~vAE~~l~l 165 (600)
.+.+++...+.++...+....+ ..+.+++.+..|+||+|..+|+|+||||+++|++|||.|+|+|+.++.+|||+++++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336)
T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336)
T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH
Confidence 3445566677776665554333 478888888778999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHcCccccc--cccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc
Q 007512 166 LAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL 242 (600)
Q Consensus 166 ll~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~ 242 (600)
+|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.++.++. ..+.+.+.+.+.
T Consensus 129 il~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~ 208 (336)
T KOG0069|consen 129 LLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEF 208 (336)
T ss_pred HHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccc
Confidence 99999999999999999999321 235778999999999999999999999999998888888866 567777777788
Q ss_pred cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC
Q 007512 243 VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD 322 (600)
Q Consensus 243 ~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~ 322 (600)
+++++++++||+|++|||+|++|++++|++.|.+||+|++|||+|||+++|++++++||++|+|+|||+|||++|| +.+
T Consensus 209 ~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~ 287 (336)
T KOG0069|consen 209 VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVD 287 (336)
T ss_pred cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 007512 323 SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAV 369 (600)
Q Consensus 323 ~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~v 369 (600)
++|++++|+++|||+|+.|.+++++++..++.|+.+++.|++....+
T Consensus 288 ~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 288 HPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred cchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 99999999999999999999999999999999999999999876544
No 20
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=2.7e-54 Score=460.24 Aligned_cols=282 Identities=28% Similarity=0.419 Sum_probs=249.1
Q ss_pred CeEEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChh
Q 007512 59 PTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138 (600)
Q Consensus 59 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~ 138 (600)
|||++.+.++ ...+.+++++++.+.... +...+.++++|++++++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~~--~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPGR--AFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCCc--ccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 6899888874 446667777777654321 1123467999999999989999999984 5899999999999999999
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhc
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKG 218 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~ 218 (600)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.++.||||||||+|.||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCc----cccccccHhHhccCCCceEEEEccCCccccH
Q 007512 219 LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 219 ~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~----~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
|||+|++|||.... ...+....++++++++||+|++|+|+|+ .|+++++++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986431 1223456789999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATA 368 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~ 368 (600)
+||+++|++|++.||+||||++||+ .+++|+.. |+++|||+||+|.|++.+...++++++.+|+.+......
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~ 286 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSL 286 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence 9999999999999999999999996 57889975 999999999999999999999999999999988765443
No 21
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=8e-54 Score=447.69 Aligned_cols=267 Identities=24% Similarity=0.306 Sum_probs=235.7
Q ss_pred cCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhH-----HHhCCceeecCCC-CChHHHHHHHHHHHHHH
Q 007512 96 ISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAA-----ATEFGCLVVNAPT-ANTVAAAEHGIALLAAM 169 (600)
Q Consensus 96 i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~a-----a~~~GI~V~n~p~-~~~~~vAE~~l~lll~~ 169 (600)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998653 457776 3 59999999999999998322 3458999999874 78999999999999999
Q ss_pred HhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHh
Q 007512 170 ARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAI 249 (600)
Q Consensus 170 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell 249 (600)
+|+++++.+.+++|.|.+. .+.++.||||||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~~--~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQPL--PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCCC--CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 9999999999999999753 45689999999999999999999999999999999998653211000111345899999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||+++|++||++|+++||++|||++||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 371 (600)
|+++|||+|++|.+. ++...+++|+.+|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999875 4678889999999999999888874
No 22
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-53 Score=440.87 Aligned_cols=283 Identities=24% Similarity=0.390 Sum_probs=244.8
Q ss_pred eEEEecCCCHhHHHHhccc---CcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccC
Q 007512 60 TVLIAEKLGQAGLDLLNEF---ANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVD 136 (600)
Q Consensus 60 ~ilv~~~l~~~~~~~l~~~---~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD 136 (600)
++++..++.+...+.+.+. .++.+.. ...++|++++++. . -.+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~------~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWYP---------DYYDAEAILIKGR------Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEecc---------ccCCCCEEEecCC------c-CCC-CCeEEEEECCcccCccc
Confidence 4667788888887765432 2333211 2568888876542 1 223 58999999999999999
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l 216 (600)
+++|+++||.+.|. |+++.+||||++++||+++|+++++++.+++|+|.+. .+.+|+||||||||+|.||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887775 8999999999999999999999999999999999864 46899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCC--cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccH
Q 007512 217 KGLGMHVIAHDPYAPADRARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 217 ~~~g~~V~~~d~~~~~~~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
++|||+|++||++... .++ ...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987532 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 007512 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG-ASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371 (600)
Q Consensus 295 ~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~-~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~ 371 (600)
++|+++|++|++.||++|||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|++|++ .+.|+.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999976 58999999999999999999999876 566653
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=7.6e-45 Score=351.55 Aligned_cols=176 Identities=46% Similarity=0.791 Sum_probs=159.4
Q ss_pred HHHHHHHHhchHHHHHHHHcCcc-ccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH-HHHcCC
Q 007512 163 IALLAAMARNVAQADASVKAGKW-QRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR-ARAIGV 240 (600)
Q Consensus 163 l~lll~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~~g~ 240 (600)
+++||+++|+++++++.+++|.| .+....+.+++|+||||||+|.||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3345678999999999999999999999999999999999999985544 667788
Q ss_pred cccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC
Q 007512 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP 320 (600)
Q Consensus 241 ~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~ 320 (600)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||++|||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 007512 321 ADSKLVQHERVTVTPHLG 338 (600)
Q Consensus 321 ~~~~L~~~~nvilTPH~~ 338 (600)
.++||+++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999985
No 24
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=100.00 E-value=6.4e-39 Score=317.04 Aligned_cols=188 Identities=15% Similarity=0.207 Sum_probs=173.0
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEE
Q 007512 383 KPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTE 462 (600)
Q Consensus 383 ~p~~~la~~lG~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~ 462 (600)
+.|-.+++|||++++||+++ .+++++++|+|+++ .++++|++++|+++|+|++..++ +|++||+.+|+++||++.|
T Consensus 19 ssht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~~-vn~vNA~~iAkerGI~v~~ 94 (208)
T TIGR00719 19 SSHTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPDD-DRIKTAFEIAEAAGIDIEF 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCCc-hHHHHHHhhhhhcCceEEE
Confidence 35899999999999999998 89999999999998 77999999999999999888875 9999999999999999999
Q ss_pred EEeecCCCCC-CCCceEEEEEeecccccccccCCCcEEEEEEEEe-CCceEEEEEcceEEEeecCccEEEEEecCCCCCh
Q 007512 463 ERILLDGSPE-SPLEFIQVQIANVESKFASAISESGEIKVEGRVK-DGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMI 540 (600)
Q Consensus 463 ~~~~~~~~~~-~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~-gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG~I 540 (600)
.+.+.. . .|+|++++++++ .++..+++.|+++ ||.+||++||||+||+.|++|+|++.|.|+||+|
T Consensus 95 ~~~~~~---~~~~~n~v~i~v~~---------~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~I 162 (208)
T TIGR00719 95 RTEDAG---DNVHPNSAKITFSD---------EKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTI 162 (208)
T ss_pred EECCCC---CCCCCCeEEEEEEc---------CCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChH
Confidence 876532 3 699999999974 2334489999776 5789999999999999999999999999999999
Q ss_pred hhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHH
Q 007512 541 GTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKI 586 (600)
Q Consensus 541 a~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l 586 (600)
++|+++|++++|||++|+++|..+|++|+|+|++|+++|++++++|
T Consensus 163 g~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 163 AGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 9999999999999999999999999999999999999999999975
No 25
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.96 E-value=1.6e-29 Score=259.09 Aligned_cols=288 Identities=29% Similarity=0.439 Sum_probs=244.7
Q ss_pred hcccCcEEEccCCCHhHHhhhc-CCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC
Q 007512 75 LNEFANVDCAYNLSPEELCTKI-SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA 153 (600)
Q Consensus 75 l~~~~~v~~~~~~~~~el~~~i-~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~ 153 (600)
|+....+-++...+..|+.+++ .++-+-+......++++.+++.+ -||++.+.|.|+||+|+.+|.+-||.|+|.|+.
T Consensus 49 lk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~~ 127 (435)
T KOG0067|consen 49 LKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD 127 (435)
T ss_pred hhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccch
Confidence 4444556666666666666533 33333332234568999999985 799999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccc-------cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE
Q 007512 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKY-------VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226 (600)
Q Consensus 154 ~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~ 226 (600)
.-+.+|+-++.++|.++|+-....+.+++|.|..... -....+|.++|++|+|++|..++.++++||+.|+.|
T Consensus 128 ~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ify 207 (435)
T KOG0067|consen 128 AVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFY 207 (435)
T ss_pred hHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeee
Confidence 9999999999999999999999999999999975322 234689999999999999999999999999999999
Q ss_pred CCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC
Q 007512 227 DPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 227 d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~ 305 (600)
||+...-.-+.+|...+ ++++++.++|.+++||-+++.+.++++.-.+.+|+.|+.++|++||+++|+.+|.++|++|+
T Consensus 208 dp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~ 287 (435)
T KOG0067|consen 208 DPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGR 287 (435)
T ss_pred cchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCc
Confidence 99986555566777654 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC---cccc
Q 007512 306 VAQAALDVFTEEPP-PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA---TAVN 370 (600)
Q Consensus 306 i~ga~lDv~~~EP~-~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~---~~vn 370 (600)
+.|++ |. -...||.+.||.++|||.++++..+..++....+..+...+.|..+. +.||
T Consensus 288 i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvn 349 (435)
T KOG0067|consen 288 IRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVN 349 (435)
T ss_pred eeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHh
Confidence 99887 11 13468889999999999999999998888888889999888886553 4455
No 26
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.92 E-value=5.4e-26 Score=243.06 Aligned_cols=331 Identities=20% Similarity=0.203 Sum_probs=235.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCc-----ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVD-----LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~-----~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|+|||+|+||+++|+.++..|++|.+|+++... ..+...+.. ..++++++++||+|++|+|. ..+..++.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~ 79 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE 79 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH
Confidence 47999999999999999999999887777765532 222233332 23678889999999999995 456666633
Q ss_pred hHhc-cCCCceEEEEccCCccccHHHHHHhHhcC--CceE---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 007512 272 ETFG-KMKKGVRIINVARGGVIDEEALVRALDSG--RVAQ---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345 (600)
Q Consensus 272 ~~l~-~mk~gailvNvarg~ivde~aL~~aL~~g--~i~g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~ 345 (600)
... .++++++|+|+++.+.-..+++.+.+..+ ++++ +|.+..+.+ .+...||++.++++||+-... .+.
T Consensus 80 -l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~-~~~- 154 (359)
T PRK06545 80 -LADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD-PDA- 154 (359)
T ss_pred -HhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-HHH-
Confidence 233 47899999999987654344443332221 2222 222222222 334679999999999975433 222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHH---HHHHH---HHHHHHhcCCCCceEEEEEEeecC
Q 007512 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVEL---AEKLG---RLAVQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 346 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~l---a~~lG---~l~~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
.+.+.++++..+.......+..++..+..++ ||+.. +..++ ..+.+|+++ +|+++++.+.+++
T Consensus 155 -------~~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~al~~~~~~~~~~~~~la~~--gfrd~tRia~~~p 225 (359)
T PRK06545 155 -------VAELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASSLAARLAGEHPLALRLAAG--GFRDITRIASSDP 225 (359)
T ss_pred -------HHHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHHHHHhhccCchHHHhhhcc--cccCCccccCCCH
Confidence 2455556655555554455666777777777 77643 33332 245788888 9999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCc
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESG 497 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~ 497 (600)
. +|.++...|+..+...|+.+..+...+.++..-.+...|.-.|+..+ .+++.+...-.
T Consensus 226 ~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~~-------------- 284 (359)
T PRK06545 226 G-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKHG-------------- 284 (359)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccccC--------------
Confidence 8 99999999999999999999988778888887666666666665543 34444332211
Q ss_pred EEEEEEEEeCCceEEEEEcceEEEeecCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 498 EIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 498 ~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
| ..+.++.++|..+|+||.|+.|+++|+++||||.++++.+.+++..+++.|.+++.
T Consensus 285 -----~------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~~ 341 (359)
T PRK06545 285 -----G------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKNE 341 (359)
T ss_pred -----C------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCCH
Confidence 1 23458999999999999999999999999999999999999888889999999988
Q ss_pred CcHHHHHHHh
Q 007512 578 PRKETLKKIG 587 (600)
Q Consensus 578 ~~~~~l~~l~ 587 (600)
.+.+...++.
T Consensus 342 ~~~~~~~~~~ 351 (359)
T PRK06545 342 EDRERAKALL 351 (359)
T ss_pred HHHHHHHHHH
Confidence 7776655554
No 27
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.88 E-value=6.8e-23 Score=218.25 Aligned_cols=318 Identities=15% Similarity=0.160 Sum_probs=220.0
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhc-CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh-
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKG-LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE- 272 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~-~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~- 272 (600)
.-.||+|||+ |+||+++|+.++. ++.+|++||+... ...++++.+++||+|++|+|.. .+..++.+-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHh
Confidence 4579999999 9999999999995 5999999998421 1235788899999999999954 355555332
Q ss_pred Hh-ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 273 TF-GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPA--DSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 273 ~l-~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~--~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
.+ ..+|++++|+|+++-+---.+++.. .. .. +-+.-|... .+.+|++.+|++||.- ..+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~~-~~-~~-------fVG~HPMaG~E~s~lf~g~~~iltp~~---~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAMLA-SQ-AE-------VVGLHPMTAPPKSPTLKGRVMVVCEAR---LQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHHh-cC-CC-------EEeeCCCCCCCCCcccCCCeEEEeCCC---chhH-----
Confidence 11 2479999999999866422233321 11 11 223344421 2468999999999962 1111
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--ch---HHHHHHHH-------HHHH--HHhcCCCCce----EEEE
Q 007512 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PF---VELAEKLG-------RLAV--QLVAGGSGVK----TVKV 411 (600)
Q Consensus 350 ~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~---~~la~~lG-------~l~~--qL~~g~~~~k----~v~i 411 (600)
.+.+.++++..+.......|..|+..+..++ || +.++..+. .+.. .+.++ +|+ .+++
T Consensus 136 ---~~~v~~l~~~~Ga~v~~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t~iTR 210 (370)
T PRK08818 136 ---SPWVQSLCSALQAECVYATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTAVIAR 210 (370)
T ss_pred ---HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhhhcch
Confidence 2345566666667777788889999999998 55 44443331 1111 34444 677 6689
Q ss_pred EEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEE---EEEeecCCCCCCC-CceEE-----EEE
Q 007512 412 SYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLT---EERILLDGSPESP-LEFIQ-----VQI 482 (600)
Q Consensus 412 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~---~~~~~~~~~~~~~-~n~i~-----v~~ 482 (600)
++++++. ||.+++..|+ .+...|+.+......+.++..--+..+|.-. |..++.. .+ ++.++ .+-
T Consensus 211 IAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~----~~~r~~~~~~~~~~~~ 284 (370)
T PRK08818 211 ILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQ----ALQEDALAAGNYTYER 284 (370)
T ss_pred hhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hcchhhCCcccccccc
Confidence 9999998 9999999999 7778888888877788888776666666555 5544310 14 45444 221
Q ss_pred eecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEeecCccEEEEEec-CCCCChhhHHhhhhcCCccccceEeee
Q 007512 483 ANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQV-DQPGMIGTVGSILGSENVNVSFMSVGR 561 (600)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~-D~pG~Ia~V~~iL~~~~INIa~m~v~R 561 (600)
+ |.+.+ |+ -+.+.|++.-+ |+||.|+.|.++|++++|||.++++.+
T Consensus 285 ~-------------------g~~~~-------------~~-~~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~ 331 (370)
T PRK08818 285 V-------------------GYLLA-------------DL-TEPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR 331 (370)
T ss_pred c-------------------ccccC-------------CC-CcceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec
Confidence 1 22221 00 04788888885 999999999999999999999999988
Q ss_pred ecCCCcEEEEEEeCCCCcHHHHHH
Q 007512 562 VAPRKHAVMAIGVDEQPRKETLKK 585 (600)
Q Consensus 562 ~~~g~~al~~i~~D~~~~~~~l~~ 585 (600)
.++++.. ..|++....+...+.+
T Consensus 332 ~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 332 TPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred ccCceEE-EEEEEeccccHHHHHH
Confidence 8888877 8889888766655544
No 28
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.86 E-value=7.6e-21 Score=175.13 Aligned_cols=101 Identities=40% Similarity=0.558 Sum_probs=91.4
Q ss_pred EEEecCCCHhHHHHhcccCcEEEccCCCHhHHhhhcCCceEEEEcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHH
Q 007512 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAA 140 (600)
Q Consensus 61 ilv~~~l~~~~~~~l~~~~~v~~~~~~~~~el~~~i~~~d~li~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa 140 (600)
||++++++++.+++|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||||++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7999999999999999922888888888999999999999999998777999999998 699999999999999999999
Q ss_pred HhCCceeecCCCCChHHHHHHH
Q 007512 141 TEFGCLVVNAPTANTVAAAEHG 162 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~ 162 (600)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
No 29
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.84 E-value=3.2e-20 Score=201.47 Aligned_cols=170 Identities=20% Similarity=0.307 Sum_probs=140.6
Q ss_pred EcCcccCccC-hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec
Q 007512 127 RAGVGIDNVD-LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205 (600)
Q Consensus 127 ~~g~G~d~iD-~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl 205 (600)
-.++|+..+- ++..-+-||+|+|+|++++.+++|+++++++++.. ..+|.+ +..+.||+++|+|+
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~--------~~~LaGKtVgVIG~ 262 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT--------DVMIAGKTVVVCGY 262 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc--------CCCcCCCEEEEECC
Confidence 3678887652 33334468999999999999999999999998883 333333 46899999999999
Q ss_pred ChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 206 GKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 206 G~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
|.||+.+|+++++|||+|+++++++. ...+...|+..+++++++++||+|++|+ .++++|+.+.|+.||+|++|+
T Consensus 263 G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLI 338 (476)
T PTZ00075 263 GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVG 338 (476)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEE
Confidence 99999999999999999999976652 2245557888889999999999999985 378899999999999999999
Q ss_pred EccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCC
Q 007512 285 NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPA 321 (600)
Q Consensus 285 Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~ 321 (600)
|+||+ |++.+.++|+.+. ++|+++.+|...
T Consensus 339 NvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 339 NIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred EcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 99999 6777777887643 789999998753
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.77 E-value=1.2e-18 Score=180.78 Aligned_cols=151 Identities=25% Similarity=0.387 Sum_probs=127.0
Q ss_pred CCCHHHHhccCCCceEEEEcCcccCccChh-HHHhCCceee------cCCCCChHHHHHHHHHHHHHHHhchHHHHHHHH
Q 007512 109 KVNRDVFESSAGRLKVVGRAGVGIDNVDLA-AATEFGCLVV------NAPTANTVAAAEHGIALLAAMARNVAQADASVK 181 (600)
Q Consensus 109 ~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~-aa~~~GI~V~------n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~ 181 (600)
+++++++++++ .++...+|++|.|++ +|+++||.|+ |++.+|+.++||+++.+++..
T Consensus 81 ~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------ 144 (287)
T TIGR02853 81 VLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------ 144 (287)
T ss_pred cccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------
Confidence 46788888763 366788889999998 9999999999 999999999999999877732
Q ss_pred cCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc---CHHHHhccCCEEEE
Q 007512 182 AGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV---SFDEAIATADFISL 257 (600)
Q Consensus 182 ~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l 257 (600)
.+.+++|++++|+|+|.||+.+|++|+++|++|.+++++. ....+.+.|.... +++++++++|+|++
T Consensus 145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 2458899999999999999999999999999999999876 2334445565433 57788999999999
Q ss_pred ecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 258 HMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
|+|.. +++++.++.||+++++||++..
T Consensus 216 t~P~~-----ii~~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 216 TIPAL-----VLTADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred CCChH-----HhCHHHHhcCCCCeEEEEeCcC
Confidence 99954 6788899999999999999973
No 31
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.68 E-value=5.9e-17 Score=167.67 Aligned_cols=246 Identities=11% Similarity=0.080 Sum_probs=165.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD--LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
++|||||+|.||+++|+.|+..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 379999999999999999998899999999876 34555666642 2222356899999999999443 33433 4455
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCC---CCCCCccccCCcEEEcCCCCCCcHHHHHHHHH
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEP---PPADSKLVQHERVTVTPHLGASTMEAQEGVAI 350 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP---~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~ 350 (600)
..++++++++|+++.+.-..+++.+. ....++ .+ .++.|. ..+...||..+++++||+-.+. .+.
T Consensus 79 ~~l~~~~ii~d~~Svk~~~~~~~~~~-~~~~v~---~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~------ 147 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAPIVEAWEKL-HPRFVG---SHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNA------ 147 (279)
T ss_pred HhCCCCcEEEeCcchHHHHHHHHHHh-hCCcee---eCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHH------
Confidence 66899999999987654333333221 122222 11 122221 0223458889999999986443 332
Q ss_pred HHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH-----------HHHhcCCCCceEEEEEEeecC
Q 007512 351 EIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA-----------VQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 351 ~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~-----------~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
.+.+..+++..+.......+.-++..+..++ |++.....+..+. ..+++| +||++|+++.+++
T Consensus 148 --~~~v~~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p 223 (279)
T PRK07417 148 --LAIVEELAVSLGSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNP 223 (279)
T ss_pred --HHHHHHHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCCh
Confidence 2344444544444444455667777777776 7776655544432 357777 8999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEE
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLT 461 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~ 461 (600)
. +|.++...|+..+...|+.+..+...+.++..--++.++.-.
T Consensus 224 ~-~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~~~ 266 (279)
T PRK07417 224 E-LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALEQK 266 (279)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8 999999999988878888888876777777765555555433
No 32
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.61 E-value=1.5e-15 Score=156.65 Aligned_cols=225 Identities=25% Similarity=0.287 Sum_probs=164.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEE--EEECCCC-ChhHHHHcCCcc---cCH-HHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYA-PADRARAIGVDL---VSF-DEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V--~~~d~~~-~~~~a~~~g~~~---~~l-~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
-++|+|+|+|.||+++|+.++..|..+ +++|++. ..+.+.+.|+.. .+. .+....||+|++++|.. .|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999888765 6667665 445566677632 233 67788899999999944 466665
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEEPPP---ADSKLVQHERVTVTPHLGASTMEAQ 345 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~EP~~---~~~~L~~~~nvilTPH~~~~t~ea~ 345 (600)
. +....+|+|++|+|+++-+--..+++.+.+.+. ++ -+.-|.. ++.+||++..||+||.-...
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~-------vg~HPM~G~~~~~~lf~~~~~vltp~~~~~----- 148 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRF-------VGGHPMFGPEADAGLFENAVVVLTPSEGTE----- 148 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCCee-------EecCCCCCCcccccccCCCEEEEcCCCCCC-----
Confidence 3 333379999999999986654455555444332 22 2223332 35789999999999964322
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHH---H------HHHHHhcCCCCceEEEEEEe
Q 007512 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLG---R------LAVQLVAGGSGVKTVKVSYA 414 (600)
Q Consensus 346 ~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG---~------l~~qL~~g~~~~k~v~i~~~ 414 (600)
.+.++++.+++.+.+.+.....|..|+..+..++ ||+......+ . ++..+++| +|+++++++.
T Consensus 149 ----~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~ 222 (279)
T COG0287 149 ----KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIAS 222 (279)
T ss_pred ----HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHc
Confidence 3345788899998888888889999999999998 7764433332 2 24567777 8999999999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhcc
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDV 442 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~ 442 (600)
+++. +|.+++..|...+...++.+..+
T Consensus 223 ~~P~-m~~dI~~~N~~~~l~~i~~~~~~ 249 (279)
T COG0287 223 SDPE-MYADIQLSNKEALLEAIERFAKS 249 (279)
T ss_pred CChH-HHHHHHHhCcHHHHHHHHHHHHH
Confidence 9998 99999999999655556565554
No 33
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.61 E-value=1.4e-15 Score=159.40 Aligned_cols=253 Identities=21% Similarity=0.215 Sum_probs=169.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
.++|+|||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 468999999999999999999777 4899999976 34555666642 236788899999999999953 233333
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEE---PPPADSKLVQHERVTVTPHLGASTMEAQE 346 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~E---P~~~~~~L~~~~nvilTPH~~~~t~ea~~ 346 (600)
+.....++++.+++|++..+.-..+++.+.+..+ ++.++ -=+++.| |..+...|+...++++||+.++. .++.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~- 160 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAV- 160 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHH-
Confidence 3344568999999999875543334444433332 12111 0112211 11234588999999999976543 3322
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHH----------HHHHhcCCCCceEEEEEEe
Q 007512 347 GVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRL----------AVQLVAGGSGVKTVKVSYA 414 (600)
Q Consensus 347 ~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l----------~~qL~~g~~~~k~v~i~~~ 414 (600)
+.+.++++..+....+..+..++..+..++ ||+.....++.+ ...+.+| +|++.++++.
T Consensus 161 -------~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 161 -------ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred -------HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 344555555555555556677777777777 776444433322 2356677 8999999999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCceEEEEE
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEER 464 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~v~~~~ 464 (600)
+++. +|.++...|+..+...|+.+......+.++..-.++..+.-.|++
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 280 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFTR 280 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998 999999999988777787777776677777765555555444443
No 34
>PLN02256 arogenate dehydrogenase
Probab=99.60 E-value=6.7e-16 Score=161.51 Aligned_cols=236 Identities=14% Similarity=0.101 Sum_probs=162.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHh-ccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAI-ATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
+-++++|||||+|.||+++|+.++..|++|++||++...+.+...|+.. .++++++ .+||+|++|+|. ..+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 3467899999999999999999999999999999886445566677754 3677776 479999999994 456777655
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceE----EEEeccCCCCCCCCCccccCCcEEEcCCC---CCCcHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQ----AALDVFTEEPPPADSKLVQHERVTVTPHL---GASTME 343 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPH~---~~~t~e 343 (600)
-....++++++|+|+++++-...+++.+.+..+ ++.| +|..+. ...+...+++++|+. .....+
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~--------~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESG--------KGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCC--------ccccCCCeEEEecceecCCCCCHH
Confidence 435568999999999997655566666666543 2322 333222 123444445555432 222222
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---HHHhcCCCCceEEEEEEe----
Q 007512 344 AQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---VQLVAGGSGVKTVKVSYA---- 414 (600)
Q Consensus 344 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---~qL~~g~~~~k~v~i~~~---- 414 (600)
+ .+.+.++++..+.+.....|..|+..+..++ ||+. |..|.... ..+++| +|++.++...
T Consensus 184 ~--------~~~l~~l~~~lGa~v~~~~~eeHD~~vA~iShLpH~l-a~~L~~~~~~~~~~~~~--gfrd~tria~r~~~ 252 (304)
T PLN02256 184 R--------CERFLDIFEEEGCRMVEMSCEEHDRYAAGSQFITHTV-GRILGKMELESTPINTK--GYETLLRLVENTSS 252 (304)
T ss_pred H--------HHHHHHHHHHCCCEEEEeCHHHHhHHHHhhhhHHHHH-HHHHHHcCCcccccccc--cHHHHHHHHHhhcC
Confidence 2 2455666666667777778888888888887 7764 33333222 256667 8999888776
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+++. +|.+++..|+..+ ..++.+......+.++..
T Consensus 253 ~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l~ 287 (304)
T PLN02256 253 DSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQLF 287 (304)
T ss_pred CCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHHH
Confidence 9998 9999999999888 777777766555555443
No 35
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.58 E-value=2.6e-14 Score=149.11 Aligned_cols=165 Identities=24% Similarity=0.340 Sum_probs=131.8
Q ss_pred hcCCceEEEEcCC----------------CCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCC-----
Q 007512 95 KISLCDALIVRSG----------------TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTA----- 153 (600)
Q Consensus 95 ~i~~~d~li~~~~----------------~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~----- 153 (600)
.+.++|+++.--. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.+++.+..
T Consensus 52 ~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 52 ALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 4688998885411 124678899884 676444 588899988 8899999999998864
Q ss_pred -ChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-C
Q 007512 154 -NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231 (600)
Q Consensus 154 -~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~ 231 (600)
|+.++||.++.+.+. ..+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++. .
T Consensus 129 ~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 129 LNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred hccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 888999997765431 12356789999999999999999999999999999999986 3
Q ss_pred hhHHHHcCCccc---CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 232 ADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 232 ~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
.+.+.+.|+... ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 188 ~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 188 LARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 455667777654 466889999999999983 4678889999999999999985
No 36
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.58 E-value=3.2e-15 Score=154.37 Aligned_cols=235 Identities=17% Similarity=0.151 Sum_probs=152.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc--ccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD--LVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|+|||+|.||+++|+.|+..| .+|++||++. ..+.+.+.|+. ..+++++. +||+|++|+|.. .+..++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence 37999999999999999999766 4899999876 34455666753 33677765 599999999954 344444 33
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceE----EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHH
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ----AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGV 348 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g----a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~ 348 (600)
... ++++++|+|++.-..--.+.+.+. ..+++.+ +|.+.++++ .+...|++...++++|.-++ +.+..
T Consensus 78 l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~--~a~~~l~~g~~~il~~~~~~-~~~~~--- 149 (275)
T PRK08507 78 LLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPK--AAIKGLYEGKVVVLCDVEKS-GEKHQ--- 149 (275)
T ss_pred Hhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHH--hccHHHhCCCeEEEecCCCC-CHHHH---
Confidence 445 889999999876432222222221 1122222 222222222 33345788888899996432 22222
Q ss_pred HHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---------HHHhcCCCCceEEEEEEeecC
Q 007512 349 AIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---------VQLVAGGSGVKTVKVSYASSR 417 (600)
Q Consensus 349 ~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---------~qL~~g~~~~k~v~i~~~Gs~ 417 (600)
+.+..+++..+.......+.-+++.+..++ ||+ ++.-++..+ ..++++ +|++.++++.+++
T Consensus 150 -----~~v~~l~~~~G~~~~~~~~~~hD~~~a~vs~lph~-~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~~p 221 (275)
T PRK08507 150 -----ERAKEIFSGLGMRIVYMDAKEHDLHAAYISHLPHI-ISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKSSP 221 (275)
T ss_pred -----HHHHHHHHHhCCEEEEeCHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccCCH
Confidence 334444444444445556677788887777 874 333333222 356677 8999999999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHHH
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADYT 452 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~ 452 (600)
. +|.++...|+..+...|+.+......+.++..-
T Consensus 222 ~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~ 255 (275)
T PRK08507 222 A-MWSDIFKQNKENVLEAIDEFIKELEQFKQLIEN 255 (275)
T ss_pred H-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8 999999999987777787777765556555543
No 37
>PLN02494 adenosylhomocysteinase
Probab=99.55 E-value=1.1e-14 Score=158.01 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=107.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
+..+.||+++|+|+|.||+.+|+++++||++|+++|+++. ...+...|+..++++++++.+|+|+.+ ..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchH
Confidence 3458999999999999999999999999999999988763 356777888777899999999999984 34788999
Q ss_pred HhHhccCCCceEEEEccC-CccccHHHHHHh--HhcCCceEEEEeccCCC
Q 007512 271 DETFGKMKKGVRIINVAR-GGVIDEEALVRA--LDSGRVAQAALDVFTEE 317 (600)
Q Consensus 271 ~~~l~~mk~gailvNvar-g~ivde~aL~~a--L~~g~i~ga~lDv~~~E 317 (600)
.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|..+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 678999999987 8888886 999999987
No 38
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.49 E-value=5e-14 Score=154.57 Aligned_cols=233 Identities=17% Similarity=0.196 Sum_probs=160.8
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhH
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
++|+||| +|.||+++|+.|+..|++|.+||++... +.+.+.|+... ++.+.+.+||+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 9999999999999999999999987632 44556677543 6788899999999999953 455555 344
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERVTVTPHLGASTMEAQEGVAIEI 352 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~-~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~ 352 (600)
...++++++++|+++.+....+++.+.+..+. .+.+.-|.. +..+++....+++||+-+. +.+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~-~~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKR-SNP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCC-CHH--------H
Confidence 56689999999999866555566655554321 111223321 2246888899999997532 222 2
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHH---HHH---H---HHHHHHhcCCCCceEE----EEEEeecC
Q 007512 353 AEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELA---EKL---G---RLAVQLVAGGSGVKTV----KVSYASSR 417 (600)
Q Consensus 353 ~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la---~~l---G---~l~~qL~~g~~~~k~v----~i~~~Gs~ 417 (600)
++.+.++++..+.......|..|+..+..++ ||+... ..+ | ..+.+++++ +|++. ++++.+++
T Consensus 144 ~~~v~~ll~~~G~~v~~~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa~~~p 221 (437)
T PRK08655 144 FDKVKNFLEKEGARVIVTSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRILGQNP 221 (437)
T ss_pred HHHHHHHHHHcCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHhcCCH
Confidence 3455566655555555566667777787776 765422 222 2 223457777 89985 99999999
Q ss_pred CCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 418 APDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 418 a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
. +|.+++..|+ .+...++.+..+.-.+.++..
T Consensus 222 ~-lw~dI~~~N~-~~~~~l~~~~~~l~~l~~~l~ 253 (437)
T PRK08655 222 Y-LYASIQMNNP-QIPEIHETFIKECEELSELVK 253 (437)
T ss_pred H-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999 466777777666555555554
No 39
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.47 E-value=1.5e-13 Score=148.11 Aligned_cols=227 Identities=21% Similarity=0.244 Sum_probs=151.4
Q ss_pred HhHHHHhcccC-cEEEccCCCHhHHhhh----cC-CceEEEEcCCCCCCHHHHhcc---CCCceE-EEEcCcccCccC-h
Q 007512 69 QAGLDLLNEFA-NVDCAYNLSPEELCTK----IS-LCDALIVRSGTKVNRDVFESS---AGRLKV-VGRAGVGIDNVD-L 137 (600)
Q Consensus 69 ~~~~~~l~~~~-~v~~~~~~~~~el~~~----i~-~~d~li~~~~~~~~~~~l~~~---~~~Lk~-I~~~g~G~d~iD-~ 137 (600)
+.....|.+.+ .|.-....+.+|.... +. ..|. ++..+..++.-+-... .++++= +=-.++|+...- +
T Consensus 71 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~p~~-iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~~ 149 (406)
T TIGR00936 71 DDVAAALAKAGIPVFAWRGETNEEYYWAIEQVLDHEPNI-IIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAM 149 (406)
T ss_pred HHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhcCCCCE-EEecccHHHHHHHHhhhhhhhccEEEeecchHHHHHHHHH
Confidence 44555666544 4444455566664332 22 3444 3343433433222211 112322 234677776652 2
Q ss_pred hHHHhCCceeecCCCCChHHHHH--HHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHH
Q 007512 138 AAATEFGCLVVNAPTANTVAAAE--HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE--~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
+...+-..+|+++..+.+....| |..+.- ....+ + + ..+..+.|++++|+|+|.||+.+|++
T Consensus 150 ~~~~~L~~Pvi~vnds~~K~~fDn~yg~g~s--~~~~i------~------r--~t~~~l~Gk~VvViG~G~IG~~vA~~ 213 (406)
T TIGR00936 150 EAEGVLKFPAINVNDAYTKSLFDNRYGTGQS--TIDGI------L------R--ATNLLIAGKTVVVAGYGWCGKGIAMR 213 (406)
T ss_pred HHcCCCCCcEEEecchhhchhhhcccccchh--HHHHH------H------H--hcCCCCCcCEEEEECCCHHHHHHHHH
Confidence 33334567788777665555555 222211 00000 0 0 12446899999999999999999999
Q ss_pred hhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-cc
Q 007512 216 AKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-ID 293 (600)
Q Consensus 216 l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i-vd 293 (600)
++++|++|+++|.++ ....+...|+...+++++++.+|+|+.++. +.++++...|..||+|++++|+||+.+ +|
T Consensus 214 ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId 289 (406)
T TIGR00936 214 ARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEID 289 (406)
T ss_pred HhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeC
Confidence 999999999997665 334566778877788999999999988654 678899999999999999999999998 99
Q ss_pred HHHHHHhHhcCCceEEEEeccCC
Q 007512 294 EEALVRALDSGRVAQAALDVFTE 316 (600)
Q Consensus 294 e~aL~~aL~~g~i~ga~lDv~~~ 316 (600)
.++|.+++.+....+..+|+|.-
T Consensus 290 ~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 290 VKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHHHHHhhccccccceEEEEe
Confidence 99999988887777899999884
No 40
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.45 E-value=1.4e-13 Score=142.91 Aligned_cols=94 Identities=26% Similarity=0.392 Sum_probs=82.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
-..|+||||||||+|.||+.+|++|+++|++|++||+.. +.+.+...|+...++++++++||+|++|+|. ++++++++
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 357999999999999999999999999999999996543 4455667788878999999999999999996 67899999
Q ss_pred HhHhccCCCceEEEEc
Q 007512 271 DETFGKMKKGVRIINV 286 (600)
Q Consensus 271 ~~~l~~mk~gailvNv 286 (600)
.+.+..||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988753
No 41
>PLN02712 arogenate dehydrogenase
Probab=99.44 E-value=9.1e-14 Score=159.29 Aligned_cols=242 Identities=14% Similarity=0.109 Sum_probs=159.2
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhc-cCCEEEEecCCCcccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIA-TADFISLHMPLTPATSKV 268 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~-~aDvV~l~~Pl~~~t~~l 268 (600)
.|.++.+++|||||+|+||+++|++++.+|++|++||+....+.+.+.|+... ++++++. +||+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46788999999999999999999999999999999998764455666777543 7888776 5999999999 4567888
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC-Cce-E---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHH
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVA-Q---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTME 343 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~-g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~e 343 (600)
+.+.....||+|++++|+++++-...+.+.+.+..+ .+. + +|..+-... .....-|++. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G-~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNG-WNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccc-hhhhhhhccC-cEeCCC------cc
Confidence 876555569999999999998754555555555443 122 2 222221000 0011124443 222111 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHH---HHHhcCCCCceEEE----EEEe
Q 007512 344 AQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLA---VQLVAGGSGVKTVK----VSYA 414 (600)
Q Consensus 344 a~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~---~qL~~g~~~~k~v~----i~~~ 414 (600)
. .+.++.+.+++...+.+.....+..|+..+..++ ||+ ++..|..+. ..+.++ +|+.++ +++.
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv~ms~eeHD~~~A~vShLpHl-la~~L~~~~~~~~~~~~~--gfr~l~~Li~Ria~ 585 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHT-MGRLLEKLGLESTPINTK--GYETLLNLVENTAG 585 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHHHHCCCcccccccH--HHHHHHHHHHhhcC
Confidence 1 2223455566655566666667777777777666 653 222222111 123344 688877 9999
Q ss_pred ecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 415 SSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 415 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+++. +|+++...|+.. ...|+.+......+.++..
T Consensus 586 ~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l~ 620 (667)
T PLN02712 586 DSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQLF 620 (667)
T ss_pred CCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHHH
Confidence 9998 999999999988 6677777766555555543
No 42
>COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism]
Probab=99.44 E-value=3.7e-16 Score=156.34 Aligned_cols=198 Identities=18% Similarity=0.125 Sum_probs=177.7
Q ss_pred cchHHHHHHHHHHHHHHhcCCCC---ceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCce
Q 007512 383 KPFVELAEKLGRLAVQLVAGGSG---VKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLR 459 (600)
Q Consensus 383 ~p~~~la~~lG~l~~qL~~g~~~---~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI~ 459 (600)
+.+..-+.|+|+.+++|.+. . ++++.+.++++++ .++.++.++.|.+.|.+ ++.+++.++.+.+..+.+.||.
T Consensus 51 s~~~aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~ 126 (262)
T COG1760 51 SSHTAGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIK 126 (262)
T ss_pred cccCcccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhH
Confidence 34555677899999999877 5 8899999999998 99999999999999999 6666679999999999999999
Q ss_pred EEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEEEeecCccEEEEEecCCCC
Q 007512 460 LTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPG 538 (600)
Q Consensus 460 v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~pG 538 (600)
.++..+...+ ..|+|+.+|... +++...+.| +.++|.+.|++++|+.+++.+..+++++.|. +|
T Consensus 127 ~fl~~a~aig--~~~~nnAsIsga-----------e~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lG 191 (262)
T COG1760 127 IFLLTAGAIG--ALHPNNASISGA-----------EGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LG 191 (262)
T ss_pred hhhhhccccc--ccccCcceEEec-----------cCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CC
Confidence 9988776543 379999998874 588999999 5666899999999999999999999999998 99
Q ss_pred Chhh-HHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEee
Q 007512 539 MIGT-VGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLK 599 (600)
Q Consensus 539 ~Ia~-V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~ 599 (600)
++.. |+.++....||++.|...|...+.++.|+++.|..+.+++++.+++.+....++|.+
T Consensus 192 ltcdpVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~e 253 (262)
T COG1760 192 LTCDPVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRE 253 (262)
T ss_pred ceehhhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhhee
Confidence 9999 999999999999999999999999999999999999999999999999998888764
No 43
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.39 E-value=7.1e-13 Score=142.78 Aligned_cols=260 Identities=12% Similarity=0.056 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhH
Q 007512 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADR 234 (600)
Q Consensus 156 ~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~ 234 (600)
...++..+-.++..+|...+ .. |-+ ...-..++|+||| +|.||+++|+.|+..|..|.+||+...
T Consensus 68 ~~~~~~i~~~i~~~s~~~q~------~~-~~~----~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--- 133 (374)
T PRK11199 68 PDLIEDVLRRVMRESYSSEN------DK-GFK----TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--- 133 (374)
T ss_pred HHHHHHHHHHHHHHHHHHhH------Hh-ccc----ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc---
Confidence 33455566666666664332 11 111 1122458999999 999999999999999999999997531
Q ss_pred HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-c
Q 007512 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-V 313 (600)
Q Consensus 235 a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v 313 (600)
.+.++++++||+|++|+|... +..++. + +..+++|++|+|+++.+.....++.+.+.. ++ .+.+ .
T Consensus 134 --------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l~~l~~~~iv~Dv~SvK~~~~~~~~~~~~~-~f--vg~HPm 199 (374)
T PRK11199 134 --------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-LPPLPEDCILVDLTSVKNAPLQAMLAAHSG-PV--LGLHPM 199 (374)
T ss_pred --------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-HhCCCCCcEEEECCCccHHHHHHHHHhCCC-CE--EeeCCC
Confidence 246778899999999999654 555553 3 444899999999988654334455443332 22 2222 2
Q ss_pred cCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHH
Q 007512 314 FTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEK 391 (600)
Q Consensus 314 ~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~ 391 (600)
++.+ ...+....++++|+ ...++. +.+.++++..+.......|.-|+..+..++ ||+.....
T Consensus 200 ~G~~-----~~~~~~~~vv~~~~---~~~~~~--------~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al 263 (374)
T PRK11199 200 FGPD-----VGSLAKQVVVVCDG---RQPEAY--------QWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAY 263 (374)
T ss_pred CCCC-----CcccCCCEEEEcCC---CCchHH--------HHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22355566778774 222222 233444444445555566777788887777 66543332
Q ss_pred HHHHH---------HHHhcCCCCceE----EEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHHHHhhcCc
Q 007512 392 LGRLA---------VQLVAGGSGVKT----VKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGL 458 (600)
Q Consensus 392 lG~l~---------~qL~~g~~~~k~----v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~~A~e~GI 458 (600)
...++ ..+.++ +|++ +++++++++. +|.+++..|+..+ ..|+.+..+...+.++..-.++..+
T Consensus 264 ~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l 339 (374)
T PRK11199 264 GLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFAQDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAF 339 (374)
T ss_pred HHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHcCCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 22221 234455 7888 9999999998 9999999999888 8888888776677777765555555
Q ss_pred eEEEE
Q 007512 459 RLTEE 463 (600)
Q Consensus 459 ~v~~~ 463 (600)
.-.|.
T Consensus 340 ~~~~~ 344 (374)
T PRK11199 340 IDSFR 344 (374)
T ss_pred HHHHH
Confidence 44443
No 44
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.33 E-value=4.1e-12 Score=137.89 Aligned_cols=211 Identities=21% Similarity=0.234 Sum_probs=141.0
Q ss_pred HhHHHHhcccC-cEEEccCCCHhHHhh----hc--CCceEEEEcCCCCCCHHHHhcc---CCCceEE-EEcCcccCcc-C
Q 007512 69 QAGLDLLNEFA-NVDCAYNLSPEELCT----KI--SLCDALIVRSGTKVNRDVFESS---AGRLKVV-GRAGVGIDNV-D 136 (600)
Q Consensus 69 ~~~~~~l~~~~-~v~~~~~~~~~el~~----~i--~~~d~li~~~~~~~~~~~l~~~---~~~Lk~I-~~~g~G~d~i-D 136 (600)
+.....|.+.+ .|.-....+.+|... .+ ...|+ |+.-+..++.-+-... .++++=+ =-.++|+..+ .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~i-iiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNM-ILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCE-EEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45566676543 443334456665432 23 23454 4444444433332221 1233333 2467888775 3
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccc-cccceeccCCEEEEEecChhHHHHHHH
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGKTLAVLGFGKVGSEVARR 215 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktiGIIGlG~IG~~vA~~ 215 (600)
+....+.+++|+|++.+++....|...+.-- +-|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~---------------s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGTGE---------------SLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHHHh---------------hhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 3344567899999999998886553332222 223210 012446899999999999999999999
Q ss_pred hhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcc-cc
Q 007512 216 AKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV-ID 293 (600)
Q Consensus 216 l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~i-vd 293 (600)
++++|++|+++|+.+ ....+...|+...+++++++.+|+|+.++. +.++++...+..||+|++++|+|+... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 999999999999876 334455668877789999999999988763 567899999999999999999999765 56
Q ss_pred HHHHHH
Q 007512 294 EEALVR 299 (600)
Q Consensus 294 e~aL~~ 299 (600)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 676643
No 45
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.32 E-value=5.1e-12 Score=147.57 Aligned_cols=225 Identities=22% Similarity=0.220 Sum_probs=147.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCC-ChhHHHHcCCc---ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYA-PADRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|||||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..++++++.+||+|++|+|.. ....++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH-
Confidence 68999999999999999999877 5899999986 34556667763 346888899999999999953 3444442
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC---------CCCCccccCCcEEEcCCCCCCcH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP---------PADSKLVQHERVTVTPHLGASTM 342 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~---------~~~~~L~~~~nvilTPH~~~~t~ 342 (600)
.....++++++|+|++..+....+.+.+.+....+ .+...-|. +++..||...++++||+.... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 23345688999999997553334445444433211 11222221 245579999999999975433 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chH---HHHHHHH-----HHHHHHhcCCCCceEEEEE
Q 007512 343 EAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFV---ELAEKLG-----RLAVQLVAGGSGVKTVKVS 412 (600)
Q Consensus 343 ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~---~la~~lG-----~l~~qL~~g~~~~k~v~i~ 412 (600)
+.. +.+.++++..+....+..+..++..+...+ ||+ .+++.+. ..+..++++ +|++.++.
T Consensus 156 ~~~--------~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~~~~~~a~~--~f~~~tRi 225 (735)
T PRK14806 156 AAL--------ARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFSLVDQLANREDNLDIFRYAAG--GFRDFTRI 225 (735)
T ss_pred HHH--------HHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHHHHHHHhhcCChhHHHhhhcc--chhccccc
Confidence 322 334445544444343444555566665555 763 2223331 234578887 89999999
Q ss_pred EeecCCCCccccccccHHHHHhhchhhhc
Q 007512 413 YASSRAPDDLDTRLLRAMITKGLIEPISD 441 (600)
Q Consensus 413 ~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 441 (600)
+.+++. +|.++..++...+...|+.+..
T Consensus 226 a~~~p~-~~~di~~~n~~~~~~~l~~~~~ 253 (735)
T PRK14806 226 AASDPV-MWHDIFLANKEAVLRALDHFRD 253 (735)
T ss_pred ccCCHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 999998 9999998888766444444433
No 46
>PLN02712 arogenate dehydrogenase
Probab=99.31 E-value=3.7e-12 Score=146.11 Aligned_cols=240 Identities=15% Similarity=0.146 Sum_probs=155.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHh-ccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAI-ATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell-~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.++|||||+|+||+++|+.++.+|++|++||++.....+.+.|+.. .++++++ .+||+|++|+|. ..+..++..
T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667)
T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667)
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh
Confidence 3445789999999999999999999999999999886555677778754 3677866 569999999994 467777766
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEe-ccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALD-VFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
..+..|++|++|+|+++-+..-.+++.+.+..+. +.+ .+ -|+.|. ..+ -|..-.++++|.+.+...+ .
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~--~HPMaG~e~--~~~-g~~~~~~~~~~~~~~~~~~-----~ 197 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIIC--SHPMFGPQS--AKH-GWDGLRFVYEKVRIGNEEL-----R 197 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEe--eCCcCCCcc--ccc-hhccCcEEEeeccCCCccc-----c
Confidence 5445689999999998766433445555554432 222 11 123331 111 1233346777655322111 1
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHHHHHhcCCCC---------ceEEEEEEeecCC
Q 007512 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLAVQLVAGGSG---------VKTVKVSYASSRA 418 (600)
Q Consensus 350 ~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~~qL~~g~~~---------~k~v~i~~~Gs~a 418 (600)
.+.++.+.++++..+.+.....+..|+..+..++ ||+ +|..| ..+.-+..+ ++-+++++.+++.
T Consensus 198 ~~~~~~l~~l~~~lGa~v~~ms~eeHD~~~A~vshLpH~-la~~L----~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~ 272 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKMVEMSCTEHDKYAAESQFITHT-VGRVL----EMLKLESTPINTKGYESLLDLVENTCGDSFD 272 (667)
T ss_pred HHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHH-HHHHH----HHhcccccccCCccHHHHHHHHHHHhcCCHH
Confidence 2233455566665566667777788888888888 665 33333 222210001 1224678889998
Q ss_pred CCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 419 PDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 419 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
+|+++...|+ .+...|+.+......+..+..
T Consensus 273 -L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 -LYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred -HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 555678787777666666654
No 47
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.28 E-value=6.1e-13 Score=136.28 Aligned_cols=224 Identities=19% Similarity=0.137 Sum_probs=151.2
Q ss_pred HHHHhhcCC--CEEEEECCCC-ChhHHHHcCCcc--cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEc
Q 007512 212 VARRAKGLG--MHVIAHDPYA-PADRARAIGVDL--VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 212 vA~~l~~~g--~~V~~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNv 286 (600)
+|+.|+..| .+|++||++. ..+.+.+.|+.. .+-.+.+++||+|++|+|.. .+..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577787666 8999999987 556677888743 23257899999999999944 355555 3344458999999999
Q ss_pred cCCccccHHHHHHhHhc--CCceE---EEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 007512 287 ARGGVIDEEALVRALDS--GRVAQ---AALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 287 arg~ivde~aL~~aL~~--g~i~g---a~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~ 361 (600)
++-+---.+++.+.+.. .++++ +|-+..+.+ .++..||+..++++||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 98766555666666662 23433 555555555 567899999999999986422 223356666666
Q ss_pred CCCCCccccCCCCChhhhhccc--chHHHHHHHH---------HHHHHHhcCCCCceEEEEEEeecCCCCccccccccHH
Q 007512 362 GELAATAVNAPMVPAEVLTELK--PFVELAEKLG---------RLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAM 430 (600)
Q Consensus 362 g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG---------~l~~qL~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a 430 (600)
..+.+.....+..|+..+..++ ||+....... ....+++++ +|+++++++.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 6666667777888899998888 8876554443 123467777 89999999999997 99999999999
Q ss_pred HHHhhchhhhccchhhccHHH
Q 007512 431 ITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 431 ~l~GlL~~~~~~~vn~vnA~~ 451 (600)
.+...|+.+.....++.++..
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~ 245 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALE 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777778787776556655554
No 48
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.27 E-value=1.8e-11 Score=115.77 Aligned_cols=104 Identities=33% Similarity=0.512 Sum_probs=77.8
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
....+.||++.|+|||.+|+.+|++|+++|++|++++.++ ..-+|...|++..+++++++++|+++.++- .+.++
T Consensus 17 t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi 92 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVI 92 (162)
T ss_dssp H-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB
T ss_pred CceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----Ccccc
Confidence 3568999999999999999999999999999999999877 556677889998999999999999998865 46678
Q ss_pred cHhHhccCCCceEEEEccCCcc-ccHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i-vde~aL~ 298 (600)
..+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus 93 ~~e~~~~mkdgail~n~Gh~d~Eid~~~L~ 122 (162)
T PF00670_consen 93 TGEHFRQMKDGAILANAGHFDVEIDVDALE 122 (162)
T ss_dssp -HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred CHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence 9999999999999999987443 3555543
No 49
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.23 E-value=2.1e-11 Score=116.28 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=86.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH-hHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND-ETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~-~~l 274 (600)
++|||||+|.||+.+|++|.+.|++|.+||+.. ..+...+.|+.. .++.|++++||+|++|+|..++++.++.. ..+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999876 334556667754 48999999999999999987777776532 267
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
..+++|.++||++....-....+.+.+.+..+ ..+|
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vd 117 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVD 117 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeee
Confidence 78999999999999888888888888876544 4444
No 50
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.16 E-value=1e-10 Score=120.49 Aligned_cols=113 Identities=26% Similarity=0.295 Sum_probs=97.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--Hh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~ 272 (600)
.+|||||||.||..+|++|.+.|++|.+||+.+. .+.+.+.|.... +..|+.++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 4899999999999999999999999999999873 345556687654 788999999999999999998888774 56
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
.++.||+|.++||++.-.......+.+++++..+ -.+|
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~--~~lD 118 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGL--EFLD 118 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCC--cEEe
Confidence 8888999999999999998888889998988765 4445
No 51
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.12 E-value=1.9e-10 Score=119.86 Aligned_cols=109 Identities=16% Similarity=0.281 Sum_probs=89.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||+.+|+.+...|++|++||++. ..+.+.+.|+... ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 589999999999999999999999999999986 3344556676543 789999999999999998777776653 235
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.+++|+++......+++.+.+.+..+
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~ 115 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 677899999999999998777788887776544
No 52
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.10 E-value=2.5e-10 Score=118.86 Aligned_cols=108 Identities=18% Similarity=0.260 Sum_probs=88.7
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccc-c-HhHh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVL-N-DETF 274 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li-~-~~~l 274 (600)
+|||||+|.||+.+|+++...|++|.+||++. ..+.+.+.|.. ..+..+++++||+|++|+|..+.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999886 33445566664 3478899999999999999877776664 3 2356
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888888888887533
No 53
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.06 E-value=6.1e-10 Score=116.41 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=90.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DET 273 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~ 273 (600)
++|||||+|.||..+|+.|...|++|.+||++.. .+.+.+.|... .+..+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 4799999999999999999999999999999873 34445556643 4788999999999999997766666653 235
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+++|.++||++++.+.....+.+.+.+..+
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~ 114 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGF 114 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 667899999999999999888889888887655
No 54
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.04 E-value=7.7e-10 Score=119.97 Aligned_cols=104 Identities=28% Similarity=0.449 Sum_probs=89.9
Q ss_pred cceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.|++++|+|+|.||..+|++++++|++|+++|+++ ..+.+...|+..+++++.+..+|+|+.|+. +.+++
T Consensus 196 t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i 271 (413)
T cd00401 196 TDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDII 271 (413)
T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHH
Confidence 3567899999999999999999999999999999998876 456788889877788899999999998764 45678
Q ss_pred cHhHhccCCCceEEEEccCCcc-ccHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGV-IDEEALV 298 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i-vde~aL~ 298 (600)
+...+..||+|++++|+|+..+ +|...|.
T Consensus 272 ~~~~l~~mk~GgilvnvG~~~~eId~~~L~ 301 (413)
T cd00401 272 TGEHFEQMKDGAIVCNIGHFDVEIDVKGLK 301 (413)
T ss_pred HHHHHhcCCCCcEEEEeCCCCCccCHHHHH
Confidence 8888999999999999999875 6666664
No 55
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.02 E-value=1.2e-09 Score=114.26 Aligned_cols=111 Identities=21% Similarity=0.348 Sum_probs=91.1
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhcc---CCEEEEecCCCccccccccHhH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIAT---ADFISLHMPLTPATSKVLNDET 273 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~---aDvV~l~~Pl~~~t~~li~~~~ 273 (600)
+|||||+|.||+.+|++|...|++|.+||++.. .+.+.+.|+.. .++++++++ +|+|++|+|..+.++.+++ ..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence 799999999999999999999999999998763 34445567654 378888876 6999999997767777773 56
Q ss_pred hccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 274 l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
+..+++|.++||+++....+..++.+.+.+..+ ..+|
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~vd 117 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGI--HYVD 117 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCC--eEEe
Confidence 677899999999999999888889888877655 3466
No 56
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.00 E-value=8.5e-10 Score=116.25 Aligned_cols=122 Identities=25% Similarity=0.309 Sum_probs=90.9
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
-..|.|++|||||+|.||+++|+.|+.+|++|+++++.. ....+.+.|+...+.++++++||+|++++|.+.. ..++
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 357899999999999999999999999999999876653 4455667788777999999999999999996654 6777
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 323 (600)
+++.+..|++|++| -.+.|--+ ..+. ..-+...||+-..|-.+.+
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i--~~~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNI--HFGQ------IVPPADVDVIMVAPKGPGH 135 (330)
T ss_pred HHHHHhcCCCCCEE-EECCCCCh--hhce------eccCCCCcEEEeCCCCCch
Confidence 67778889999988 55555221 1110 0113456777777654333
No 57
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=98.93 E-value=4.5e-09 Score=110.11 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=91.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-CHHHHhcc---CCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIAT---ADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|||||+|.||+.+|++|...|.+|.+||++. ..+.+.+.|+... +++++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 379999999999999999999999999999986 3344556677654 78888876 699999999776677766 35
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD 312 (600)
.+..+++|.++||++++.......+.+.+++..+ ..+|
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~--~~~d 117 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGI--HFVD 117 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCC--EEEe
Confidence 6677899999999999998888888888887665 3456
No 58
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=98.88 E-value=6.8e-09 Score=84.78 Aligned_cols=72 Identities=38% Similarity=0.669 Sum_probs=67.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+++.+.|+||.+++++++|+++|+||.+|.+.+...++.+.+++.+|.+.+++++++|+++++|.++++++|
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 577899999999999999999999999999987767788999999999999999999999999999999875
No 59
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=98.88 E-value=6.8e-09 Score=108.37 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=87.0
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccccH--hHhc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLND--ETFG 275 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~--~~l~ 275 (600)
+|||||+|.||+.+|++|...|++|.+||+....+...+.|... .+..+++++||+|++|+|..+..+..+.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 79999999999999999999999999999876444455667654 47888999999999999977666666532 2466
Q ss_pred cCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 276 KMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 276 ~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999888777777777776533
No 60
>PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein. This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A.
Probab=98.87 E-value=7.3e-10 Score=105.02 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHHHhcCC---CCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhc------------cH
Q 007512 385 FVELAEKLGRLAVQLVAGG---SGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLV------------NA 449 (600)
Q Consensus 385 ~~~la~~lG~l~~qL~~g~---~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v------------nA 449 (600)
|-.=.-|+|+.++|++.+. ..+.+|++.++||++ .++++|++|+|++.|||+. ..+++++. |.
T Consensus 16 HT~Gpmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~ 93 (157)
T PF03315_consen 16 HTVGPMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENR 93 (157)
T ss_dssp TTHHHHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCE
Confidence 3344568888888888762 148899999999999 9999999999999999954 55558888 33
Q ss_pred HHHHhhcCceEE------EEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcc
Q 007512 450 DYTAKQRGLRLT------EERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGS 517 (600)
Q Consensus 450 ~~~A~e~GI~v~------~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idg 517 (600)
+.++.++.|.+. |...... ..|||++++++.+ ..++..+++++ ||+||.+++.++||
T Consensus 94 L~l~~~~~i~f~~~~dI~f~~~~~~---~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 94 LRLAGEREIPFDPERDIIFHPEEFL---PFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp EEETTTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred EEECCCcccccccCCCeEEEeccCC---CCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 333333333222 2222211 2799999999974 13456789999 88899998877664
No 61
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=98.86 E-value=1.4e-08 Score=112.60 Aligned_cols=120 Identities=11% Similarity=0.110 Sum_probs=96.2
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH----cCCc----ccCHHHHhcc---CCEEEEecCCCcccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA----IGVD----LVSFDEAIAT---ADFISLHMPLTPATS 266 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aDvV~l~~Pl~~~t~ 266 (600)
+|||||||.||+.+|++|...|++|.+||+.... +...+ .|.. ..+++++++. +|+|++|+|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999987632 22222 1532 3478888876 999999999888888
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~g 139 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEG 139 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHH
Confidence 887 4577889999999999999888888888888887665455556776653
No 62
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=3.9e-08 Score=102.31 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=111.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-------------------------cCCc-ccCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-------------------------IGVD-LVSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-------------------------~g~~-~~~l~ell~ 250 (600)
++|+|||.|.+|.++|..+...|.+|..||++.. .+.+.+ .++. ..++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999988999999998752 222211 1111 236888899
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
.||+|+.|+|...+.+.-+-++....++++++|++.+++- ....+.+.++. .++ .+++.| +|.+..+
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~r~--vg~Hf~--------~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPEKF--LALHFA--------NEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcccE--EEEcCC--------CCCCcCC
Confidence 9999999999655444443344555678999886544443 33445554443 234 334322 2344668
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
.+.++|+...+ . ++.+.+.++++......++..+..+..+.+.+. +++..|.+|
T Consensus 152 lvevv~~~~t~-~--------~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD-P--------EVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC-H--------HHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88899976543 2 334555555555444444444566667777654 777777666
No 63
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.83 E-value=5.9e-08 Score=102.41 Aligned_cols=174 Identities=24% Similarity=0.234 Sum_probs=112.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHH-----------HcC---------Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRAR-----------AIG---------VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~-----------~~g---------~~~-~~l~ell~~aDvV 255 (600)
++|||||.|.||..+|..+...|++|..||+.... +.+. +.| +.. .++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999997632 1111 111 122 3788999999999
Q ss_pred EEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCcEEEc
Q 007512 256 SLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHERVTVT 334 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nvilT 334 (600)
+-|+|...+.++.+-++.-+.++++++ +.++..++ ...++.+.++. .++ .+++-|.+-+ .-||.| ++-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aI-laSnTS~l-~~s~la~~~~~p~R~--~g~HffnP~~---~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAI-IASSTSGL-LPTDFYARATHPERC--VVGHPFNPVY---LLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeE-EEECCCcc-CHHHHHHhcCCcccE--EEEecCCccc---cCceEE---EeCC
Confidence 999999988888777777788999984 44444443 55666666654 455 4555553322 246664 3333
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 335 PHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 335 PH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+. + .++++.+.+++...+-..++-....+--+.+.++ +++..|-+|
T Consensus 158 ~~T---~--------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERT---A--------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCC---C--------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 332 2 2334555555554443333332344455666665 677666665
No 64
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.81 E-value=6.8e-08 Score=100.82 Aligned_cols=106 Identities=26% Similarity=0.265 Sum_probs=76.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcC-------------CcccCHHHHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIG-------------VDLVSFDEAIATA 252 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 252 (600)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+-.+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987632 21 11122 1222333568999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhc-CCc
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDS-GRV 306 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~-g~i 306 (600)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-.+ ..+.+.+.. .++
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~---~~l~~~~~~~~r~ 137 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI---TRLASATQRPQQV 137 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCcce
Confidence 99999999888888777666666789999886 7766543 344444443 344
No 65
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.78 E-value=1.7e-08 Score=106.32 Aligned_cols=95 Identities=27% Similarity=0.366 Sum_probs=73.6
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|.||+|||||+|+||+++|+.|+.+|++|+++++.. +.+.+.+.|+...+..+++++||+|++++|.... ...+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence 579999999999999999999999999987654432 3345557788777888999999999999994422 3344455
Q ss_pred HhccCCCceEEEEccCCcc
Q 007512 273 TFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~i 291 (600)
....|+++. +|.++.|=-
T Consensus 80 i~~~l~~g~-iVs~aaG~~ 97 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN 97 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc
Confidence 667788885 788877754
No 66
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=98.76 E-value=2.8e-08 Score=104.00 Aligned_cols=107 Identities=17% Similarity=0.258 Sum_probs=83.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHH---hccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEA---IATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++|||||+|.||..+|+.|...|++|.+||++. ..+...+.|... .+++++ +.++|+|++|+|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 379999999999999999999999999999886 334444555532 355554 46789999999966 677777 45
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
....+++|.++||++.+...+...+.+.+++..+
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~ 112 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGI 112 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCC
Confidence 5677899999999998877777777777776544
No 67
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.75 E-value=1.1e-08 Score=110.46 Aligned_cols=99 Identities=20% Similarity=0.283 Sum_probs=80.1
Q ss_pred ccccccc-cc-eeccCCEEEEEecChhHHHHHHHhhcCCCEEE------EECCCC-ChhHHHHcCCcccCHHHHhccCCE
Q 007512 184 KWQRNKY-VG-VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI------AHDPYA-PADRARAIGVDLVSFDEAIATADF 254 (600)
Q Consensus 184 ~W~~~~~-~g-~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~------~~d~~~-~~~~a~~~g~~~~~l~ell~~aDv 254 (600)
-|.+..| .+ ..|+||||+|||+|.+|+.-|..|+..|++|+ +.|.+. +.+.|.+.|+...+++|++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 4877665 23 47999999999999999987777777788777 333333 455677789988899999999999
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEE
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
|++.+|.+ . .+.+.++.+..||+|+.|.
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence 99999988 3 7777799999999998875
No 68
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.74 E-value=1.5e-07 Score=98.05 Aligned_cols=173 Identities=18% Similarity=0.146 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-------cC-----------------Cc-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-------IG-----------------VD-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-------~g-----------------~~-~~~l~ell~~ 251 (600)
++|+|||+|.||+.+|..+...|++|++||++.. .+.+.+ .+ +. ..++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5899999999999999999988999999998762 222111 11 11 2367889999
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+.|+|...+.+..+-.+....+++++++ +|++.-.+ ..+.+.++. .-.-.+++.+ .|. ...+ -
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv-~~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPV-HKMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCc-ccCc-----e
Confidence 99999999977665554434455668999877 78877544 345444432 2222566666 344 2233 4
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.+.|+-.+. .+ +.+.+..+++.......+- ...+--+.+.+. +++..|.+|
T Consensus 150 ve~v~g~~t~-~~--------~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~~~ea~~~ 202 (288)
T PRK09260 150 VELIRGLETS-DE--------TVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALVGNEAFYM 202 (288)
T ss_pred EEEeCCCCCC-HH--------HHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHHHHHHHHH
Confidence 4577764333 22 2344444444333222211 233344455443 677666555
No 69
>PRK15040 L-serine dehydratase TdcG; Provisional
Probab=98.73 E-value=5.8e-08 Score=105.16 Aligned_cols=151 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred hHHHHHHHHHH-HHHHhcCC--CCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccH---HHHHhhc--
Q 007512 385 FVELAEKLGRL-AVQLVAGG--SGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNA---DYTAKQR-- 456 (600)
Q Consensus 385 ~~~la~~lG~l-~~qL~~g~--~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA---~~~A~e~-- 456 (600)
|-.=+.|+|+. +++|.... +.+++++++++|||+ .|+++|++|+|++.||+ ++.++++++.++ +..++++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~ 95 (454)
T PRK15040 18 HTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGR 95 (454)
T ss_pred HHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCc
Confidence 44445677765 66776520 168999999999999 99999999999999999 556667999998 6667776
Q ss_pred -----Cc---------eEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEEE
Q 007512 457 -----GL---------RLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEVD 521 (600)
Q Consensus 457 -----GI---------~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v~ 521 (600)
|+ ++.|.....+ .|||++++++.+ .++..++.++ ||+||.+++-+ ++.-+
T Consensus 96 l~l~~G~~~i~f~~~~di~f~~~~lp----~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~ 160 (454)
T PRK15040 96 LPVASGAHIVDFPVAKNIIFHPEMLP----RHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLS 160 (454)
T ss_pred cccCCCCccccCCCCCceEECCCCCC----CCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--ccccc
Confidence 76 6777644332 699999999984 2335568899 88888887642 11111
Q ss_pred eecCccEEEEEecCCC---CChhhHHhhhhcCCccccceEee
Q 007512 522 VSLEGSIILCRQVDQP---GMIGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 522 ~~g~~~~Liv~~~D~p---G~Ia~V~~iL~~~~INIa~m~v~ 560 (600)
- .. ..+.| -....+...-.+++++|..+-+.
T Consensus 161 ~-~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15040 161 H-DV-------ETSVPYDFHSAGELLKMCDYNGLSISGLMMH 194 (454)
T ss_pred c-CC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 0 00 11222 22344666667778888877553
No 70
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.71 E-value=4.8e-08 Score=101.69 Aligned_cols=101 Identities=34% Similarity=0.479 Sum_probs=86.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.||++.|.|||..|+.+|.++++.|++|++..-.+ ..-+|.-.|++.+++++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 46899999999999999999999999999999975554 445577789999999999999999999765 6788999
Q ss_pred hHhccCCCceEEEEccCCcc-ccHHHH
Q 007512 272 ETFGKMKKGVRIINVARGGV-IDEEAL 297 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i-vde~aL 297 (600)
+.|..||+|+++-|.|.=.+ +|...|
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L 307 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGL 307 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHH
Confidence 99999999999999986444 355554
No 71
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.71 E-value=1.9e-08 Score=94.93 Aligned_cols=90 Identities=30% Similarity=0.465 Sum_probs=67.4
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC--ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA--PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+||+|+|||||..|...|..||..|++|++-.+.. +.+.|++.|++..++.|+.++||+|++.+|. +....++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence 679999999999999999999999999998755443 5678999999999999999999999999993 3334455667
Q ss_pred HhccCCCceEEEE
Q 007512 273 TFGKMKKGVRIIN 285 (600)
Q Consensus 273 ~l~~mk~gailvN 285 (600)
....||+|..|+=
T Consensus 81 I~p~l~~G~~L~f 93 (165)
T PF07991_consen 81 IAPNLKPGATLVF 93 (165)
T ss_dssp HHHHS-TT-EEEE
T ss_pred HHhhCCCCCEEEe
Confidence 7778999987653
No 72
>PLN02858 fructose-bisphosphate aldolase
Probab=98.70 E-value=5e-08 Score=120.07 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=91.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcc-cCHHHHhccCCEEEEecCCCccccccc--cHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVL--NDE 272 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li--~~~ 272 (600)
.++|||||+|.||..||++|...|++|.+||+... .+...+.|... .+..++.++||+|++|+|..+..+.++ ...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g 83 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEG 83 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhh
Confidence 56899999999999999999999999999999873 34455667754 489999999999999999888878776 345
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCC
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~ 305 (600)
.+..+++|.++||++....-....+.+.+.+..
T Consensus 84 ~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 84 AAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 677899999999999988877888888887654
No 73
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.70 E-value=6.9e-09 Score=120.10 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=131.5
Q ss_pred EEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc---CCceE---EEEeccCCCCCCCCCccccC
Q 007512 255 ISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS---GRVAQ---AALDVFTEEPPPADSKLVQH 328 (600)
Q Consensus 255 V~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~---g~i~g---a~lDv~~~EP~~~~~~L~~~ 328 (600)
|++|+|.. .+..++. +....++++++|+|+++-+---.++..+.+.. .+|+| ||.++.+.+ .++..||++
T Consensus 1 vila~Pv~-~~~~~~~-~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPVA-QTGPLLA-RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCHH-HHHHHHH-HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 68999944 4555553 33456899999999997554333344444443 25655 999998888 778899999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHH--------HHH
Q 007512 329 ERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRL--------AVQ 398 (600)
Q Consensus 329 ~nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l--------~~q 398 (600)
.++|+||.-... .++ .+.+.+++...+.+.....|..|++.+..++ ||+........+ +.+
T Consensus 77 ~~~il~p~~~~~-~~~--------~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~~~~~~~~~~ 147 (673)
T PRK11861 77 RNVVLCALPENA-PDA--------LARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILGESDAELKFS 147 (673)
T ss_pred CeEEEecCCCCC-HHH--------HHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhhccChhHHHH
Confidence 999999964322 222 2345555555566777778889999999998 888666555544 347
Q ss_pred HhcCCCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccHHH
Q 007512 399 LVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADY 451 (600)
Q Consensus 399 L~~g~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA~~ 451 (600)
|++| +||++|+++.+++. +|.++...|+..+...|+.+..+...+.++..
T Consensus 148 ~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~ 197 (673)
T PRK11861 148 YAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAID 197 (673)
T ss_pred hccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 89999999999998 99999999999887778777766555555554
No 74
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=98.68 E-value=5e-08 Score=101.55 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=82.7
Q ss_pred EEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEEecCCCcccccccc--HhHhccC
Q 007512 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLN--DETFGKM 277 (600)
Q Consensus 202 IIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~--~~~l~~m 277 (600)
|||+|.||..+|++|...|++|.+||++. ..+...+.|+.. .++.+++++||+|++|+|..+..+.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999886 334455667654 3789999999999999997666666652 3456678
Q ss_pred CCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 278 KKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
++|.++||++....-....+.+.+.+..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999997666556667676665433
No 75
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=98.67 E-value=6.2e-08 Score=107.25 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=92.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH----cCCc---ccCHHHHhc---cCCEEEEecCCCcccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA----IGVD---LVSFDEAIA---TADFISLHMPLTPATS 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~----~g~~---~~~l~ell~---~aDvV~l~~Pl~~~t~ 266 (600)
.+|||||+|.||+.+|++|...|++|.+||+.... +...+ .|.. ..++++++. ++|+|++++|..+.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 47999999999999999999999999999988633 22222 1432 347888886 5999999999888888
Q ss_pred ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.++ +..+..+++|.+|||++.+..-+...+.+.+.+..+.....=|++.+
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~ 131 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE 131 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence 888 45677799999999999998888888888888876643333355544
No 76
>PLN02858 fructose-bisphosphate aldolase
Probab=98.66 E-value=7.6e-08 Score=118.54 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=89.3
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccc--cHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVL--NDE 272 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li--~~~ 272 (600)
.++|||||+|.||..||++|...|++|.+||++.. .+...+.|.. ..+..+++++||+|++|+|..++++.++ +..
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 3344555654 3488999999999999999888888776 345
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.+..+++|.++||++....-....+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999887777778777776
No 77
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.66 E-value=7.3e-08 Score=98.53 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=90.5
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccH-
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLND- 271 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~- 271 (600)
...++||+||+|.||..++..|-+.|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|.....+.++..
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 3578999999999999999999999999999999884 345677788654 7999999999999999988777776633
Q ss_pred -hHhccCCCceEE-EEccCCccccHHHHHHhHhcCC
Q 007512 272 -ETFGKMKKGVRI-INVARGGVIDEEALVRALDSGR 305 (600)
Q Consensus 272 -~~l~~mk~gail-vNvarg~ivde~aL~~aL~~g~ 305 (600)
..|..+++|... ||.+.-..--...+.+++....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~ 148 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG 148 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC
Confidence 366667787776 8998877666777777777653
No 78
>PRK15023 L-serine deaminase; Provisional
Probab=98.59 E-value=2e-07 Score=101.11 Aligned_cols=150 Identities=14% Similarity=-0.026 Sum_probs=99.6
Q ss_pred hHHHHHHHHHH-HHHHhcC--CCCceEEEEEEeecCCCCccccccccHHHHHhhchhhhccch------------hhccH
Q 007512 385 FVELAEKLGRL-AVQLVAG--GSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFV------------NLVNA 449 (600)
Q Consensus 385 ~~~la~~lG~l-~~qL~~g--~~~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~vnA 449 (600)
|-.=+.|+|+. +++|... .+.+++++++++|||+ .|+++|++|+|++.||++ +.++++ +..++
T Consensus 18 HTvGPmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G-~~Pd~~d~~~~~~~~~~~~~~~~ 95 (454)
T PRK15023 18 HTVGPMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAG-NEPATVDIDSIPGFIRDVEERER 95 (454)
T ss_pred hHHHHHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhcc-CCCCCcChhhhHHHHHHHhhcCc
Confidence 44455677876 7888632 1268999999999999 999999999999999994 445556 56788
Q ss_pred HHHHhhcCceEEEE--------EeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEE-EEeCCceEEEEEcceEE
Q 007512 450 DYTAKQRGLRLTEE--------RILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEG-RVKDGVPHLTKVGSFEV 520 (600)
Q Consensus 450 ~~~A~e~GI~v~~~--------~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~G-sv~gG~~~I~~Idgf~v 520 (600)
+.+++++ +.+.|. .... ..|||++++++.+ .++...+.++ ||+||.+++-+=.+.+-
T Consensus 96 l~la~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~~~~~~~ 161 (454)
T PRK15023 96 LLLAQGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEEHFGQDA 161 (454)
T ss_pred cccCCCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeecccccccc
Confidence 8887664 666662 2222 2699999999984 2334568999 88889888753111110
Q ss_pred EeecCccEEEEEecCCCCC---hhhHHhhhhcCCccccceEee
Q 007512 521 DVSLEGSIILCRQVDQPGM---IGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 521 ~~~g~~~~Liv~~~D~pG~---Ia~V~~iL~~~~INIa~m~v~ 560 (600)
.. ..+.|-. ...+...-.++++.|..+-+.
T Consensus 162 ---~~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~~ 194 (454)
T PRK15023 162 ---AN-------EVSVPYPFKSATELLAYCNETGYSLSGLAMQ 194 (454)
T ss_pred ---cC-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHHH
Confidence 01 1122322 334555556777777766553
No 79
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.59 E-value=2.1e-07 Score=101.94 Aligned_cols=106 Identities=23% Similarity=0.195 Sum_probs=73.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc---cCHHHH---------------hccCCEEEEec
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL---VSFDEA---------------IATADFISLHM 259 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~l~~ 259 (600)
++|+|||+|.||..+|..|...|++|++||++...-.+...|... ..++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999876433333333311 134444 34799999999
Q ss_pred CCC------ccccccc--cHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 260 PLT------PATSKVL--NDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 260 Pl~------~~t~~li--~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
|.. ++...+. -+.....+++|.++|+.+...+-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 953 1112222 2345566899999999988665555555544443
No 80
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=7e-07 Score=93.06 Aligned_cols=170 Identities=18% Similarity=0.208 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcCC-------------cc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIGV-------------DL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g~-------------~~-~~l~ell~~ 251 (600)
++|||||.|.||+.+|..+...|++|+.||+.... +. ..+.|. .. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 48999999999999999999899999999988732 22 222232 11 256 55899
Q ss_pred CCEEEEecCCCccccccccHhHhccC-CCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKM-KKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~m-k~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
||+|+-|+|-..+.+..+-...-..+ +++++|.+.+++-.+. ++..++.. .++ .+++.|.+-| ..+|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~~r~--~g~hf~~P~~---~~~lv--- 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRPGRV--LGLHFFNPVP---VLPLV--- 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCCccE--EEEecCCCcc---cCceE---
Confidence 99999999988887776655433444 8899998887765443 33333322 344 5666665332 23444
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc---CCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALK---GELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~---g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
=++|+.+++ .++++.+..++. |+.+.. ++ ..+--..+.+ .|++..|.+|
T Consensus 155 --Elv~~~~T~---------~~~~~~~~~~~~~~lgk~pv~-v~--d~pGfi~nRi~~~~~~Ea~~l 207 (286)
T PRK07819 155 --ELVPTLVTS---------EATVARAEEFASDVLGKQVVR-AQ--DRSGFVVNALLVPYLLSAIRM 207 (286)
T ss_pred --EEeCCCCCC---------HHHHHHHHHHHHHhCCCCceE-ec--CCCChHHHHHHHHHHHHHHHH
Confidence 466665444 233445555533 222222 22 2223344443 4777776665
No 81
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.58 E-value=7.3e-07 Score=92.95 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=83.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..+|..+...|++|.+||++.. .+.+.+ .| +.. .+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998752 222111 13 122 2454 5789
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
||+|+.|+|...+.+..+-++....++++++|+ |++.-.+ ..+.+.+.. .++ .+++.+. |.+ -.++.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~v--- 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKLV--- 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCceE---
Confidence 999999999776655444345556689999887 6655443 356555532 233 4555555 332 23443
Q ss_pred cEEEcCCCCCC
Q 007512 330 RVTVTPHLGAS 340 (600)
Q Consensus 330 nvilTPH~~~~ 340 (600)
-+.|+.+++
T Consensus 153 --ei~~g~~t~ 161 (292)
T PRK07530 153 --ELIRGIATD 161 (292)
T ss_pred --EEeCCCCCC
Confidence 356665443
No 82
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=98.56 E-value=1.2e-07 Score=76.56 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=61.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+++.+.|+||+++.+++.|+++++||.+|.... .++.+++.++++.+..++++++|+++++|.+++++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997642 34889999999999899999999999999999875
No 83
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=98.55 E-value=2.2e-07 Score=102.99 Aligned_cols=118 Identities=20% Similarity=0.229 Sum_probs=87.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc---C--Cc-ccCHHHHh---ccCCEEEEecCCCcccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI---G--VD-LVSFDEAI---ATADFISLHMPLTPATSKV 268 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~---g--~~-~~~l~ell---~~aDvV~l~~Pl~~~t~~l 268 (600)
.|||||+|.||+.+|++|...|++|.+||+... .+...+. | +. ..+++++. +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999998763 2333333 2 32 23666655 5699999999977777777
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
+ ...+..+++|.+|||++....-+.....+.+.+..+.....=|++.+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~ 128 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE 128 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence 7 45667789999999999888777777777787765643333344443
No 84
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.55 E-value=3.8e-07 Score=90.14 Aligned_cols=108 Identities=31% Similarity=0.374 Sum_probs=79.9
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-HHcCCcccCHHHHhc-cCCEEEEecCCCcccccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-RAIGVDLVSFDEAIA-TADFISLHMPLTPATSKV 268 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-~~~g~~~~~l~ell~-~aDvV~l~~Pl~~~t~~l 268 (600)
+.++.||+++|+|+|.+|+.+|+.|..+|++|+++|++... ... ...|...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 56789999999999999999999999999999999987632 222 233666666677775 7999987765 357
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+++..+..|+. -+++.-+-+.+-+.++ .+.|++..|
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~~~~-~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLADPRH-GQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCCHhH-HHHHHHCCC
Confidence 88888888874 4777777777654332 344555544
No 85
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.53 E-value=4.5e-07 Score=99.49 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=87.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-----------------ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-----------------LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-----------------~~~l~ell~~aDvV~l~~P 260 (600)
++|||||+|.||..+|..+.. |++|++||.+...-.....|.. ..+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 6999999988744333334432 2233457899999999999
Q ss_pred CCc------cccccc--cHhHhccCCCceEEEEccCCccccHHHHH-HhHhc--CCceE-EEEeccCCCCCCCC---Ccc
Q 007512 261 LTP------ATSKVL--NDETFGKMKKGVRIINVARGGVIDEEALV-RALDS--GRVAQ-AALDVFTEEPPPAD---SKL 325 (600)
Q Consensus 261 l~~------~t~~li--~~~~l~~mk~gailvNvarg~ivde~aL~-~aL~~--g~i~g-a~lDv~~~EP~~~~---~~L 325 (600)
... +...+. .+.....+++|.++|+.+.-.+-..+.++ ..+++ |.-.+ .-.=+|-+||.... ..+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 542 223443 23455678999999999987765555443 33333 22111 11113556776433 456
Q ss_pred ccCCcEE
Q 007512 326 VQHERVT 332 (600)
Q Consensus 326 ~~~~nvi 332 (600)
...+.++
T Consensus 166 ~~~~riv 172 (425)
T PRK15182 166 TNIKKIT 172 (425)
T ss_pred cCCCeEE
Confidence 6667773
No 86
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.53 E-value=2e-07 Score=97.98 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=67.5
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+++|||||+|.+|+.+|++|...|++|.+||++.. .++++++++||+|++++|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998742 3578889999999999996 4666666432122
Q ss_pred cCCCceEEEEccCCc
Q 007512 276 KMKKGVRIINVARGG 290 (600)
Q Consensus 276 ~mk~gailvNvarg~ 290 (600)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478899999998743
No 87
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.52 E-value=1.7e-06 Score=91.00 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=68.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcCC-------------c-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIGV-------------D-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g~-------------~-~~~l~ell~~ 251 (600)
++|+|||+|.||.++|..+...|++|++||+... .+.+ .+.|. . ..++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 2221 13342 2 2378889999
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
||+|+.|+|...+.+..+-...-..+++++++....+ . .....+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence 9999999996644333332222223455555543333 3 235556666644
No 88
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.51 E-value=1.2e-06 Score=89.94 Aligned_cols=101 Identities=23% Similarity=0.282 Sum_probs=74.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC----EEEEE-CCCC-ChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM----HVIAH-DPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~----~V~~~-d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||+|.||+++++.|...|+ +|++| |+.. ..+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 479999999999999999998787 89999 7765 2344555677543 77888999999999997 555666653
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
.....++++.++|++..|- ..+.+.+.+.
T Consensus 80 -~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~ 108 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAGI--TLADLQEWAG 108 (266)
T ss_pred -HHHhhcCCCCEEEEecCCC--cHHHHHHHcC
Confidence 3445578899888886553 5555554443
No 89
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.51 E-value=1.3e-06 Score=90.52 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=101.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh------------HHHHcC-------------Cccc-CHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD------------RARAIG-------------VDLV-SFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~------------~a~~~g-------------~~~~-~l~ell~~ 251 (600)
++|+|||.|.||.++|..+...|++|++||++.... ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 579999999999999999999999999999876321 122233 1112 444 4799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|++|+|-..+.+.-+-++....++++++|+....| +....+.+.+.. .++ .+.+-+ .|.+ -.++.+
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~~r~--ig~h~~--~P~~-~~~~ve--- 152 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRPDKV--IGMHFF--NPVP-VMKLVE--- 152 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCCcce--EEeecc--CCcc-cCccEE---
Confidence 99999999976665544444455568999988433333 344466666643 244 333333 3322 234553
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
++|+-+.. .|. .+.+..+++..+....+- ...+-...+.+ .+++..|.+|
T Consensus 153 --v~~g~~t~-~e~--------~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~~~~~ea~~~ 203 (282)
T PRK05808 153 --IIRGLATS-DAT--------HEAVEALAKKIGKTPVEV-KNAPGFVVNRILIPMINEAIFV 203 (282)
T ss_pred --EeCCCCCC-HHH--------HHHHHHHHHHcCCeeEEe-cCccChHHHHHHHHHHHHHHHH
Confidence 66664333 333 244444554333222222 34444555544 3666666665
No 90
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.50 E-value=1.5e-07 Score=81.34 Aligned_cols=88 Identities=28% Similarity=0.420 Sum_probs=64.2
Q ss_pred EEEEEecChhHHHHHHHhhcCC---CEEE-EECCCCC--hhHHHHcCCccc--CHHHHhccCCEEEEecCCCcccccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG---MHVI-AHDPYAP--ADRARAIGVDLV--SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g---~~V~-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
||||||.|+||..+++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|. .....++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH
Confidence 7999999999999999999999 8999 5588763 234456666533 689999999999999993 33344433
Q ss_pred HhHhccCCCceEEEEccCC
Q 007512 271 DETFGKMKKGVRIINVARG 289 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg 289 (600)
.- ....++.++|++.-|
T Consensus 80 ~i--~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 80 EI--PHLLKGKLVISIAAG 96 (96)
T ss_dssp HH--HHHHTTSEEEEESTT
T ss_pred HH--hhccCCCEEEEeCCC
Confidence 22 446788999988643
No 91
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.48 E-value=3.3e-07 Score=93.40 Aligned_cols=95 Identities=27% Similarity=0.426 Sum_probs=82.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.-+.||.+.|-|||.+|+..|+.|++||.+|++..-.+ ...+|.-.|++.++++|+++++|+++.++- ++.+|..
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccC----CcchhhH
Confidence 45789999999999999999999999999999964443 455677789999999999999999998654 7888999
Q ss_pred hHhccCCCceEEEEccCCcc
Q 007512 272 ETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~i 291 (600)
+.|.+||+++++-|+|.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999987544
No 92
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.45 E-value=2e-08 Score=98.79 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=109.0
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
.+++|||- |.+|+-+++.++..|+.|. +++||+|++|+|... +..++ ..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~~-~~~~i-----~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPIDA-ALNYI-----ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHHH-HHHHH-----HH
Confidence 37999988 9999999999999999985 368999999999543 33333 33
Q ss_pred CCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 007512 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355 (600)
Q Consensus 277 mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~~ 355 (600)
+. .+|+|+++-+-- +.++ ....+++ + -|+ |..+...|+ .++++++.. ...++ .+.
T Consensus 51 ~~--~~v~Dv~SvK~~----i~~~-~~~~vg~---HPMfG--p~~a~~~lf--~~~iv~~~~--~~~~~--------~~~ 106 (197)
T PRK06444 51 YD--NNFVEISSVKWP----FKKY-SGKIVSI---HPLFG--PMSYNDGVH--RTVIFINDI--SRDNY--------LNE 106 (197)
T ss_pred hC--CeEEeccccCHH----HHHh-cCCEEec---CCCCC--CCcCccccc--ceEEEECCC--CCHHH--------HHH
Confidence 33 379999975541 2221 1112221 0 012 223344566 466665431 22222 234
Q ss_pred HHHHHcCCCCCccccCCCCChhhhhccc--chHHHHHHHHHHHHHHhcCCCCceEEEEEE----eecCCCCccccccccH
Q 007512 356 VVGALKGELAATAVNAPMVPAEVLTELK--PFVELAEKLGRLAVQLVAGGSGVKTVKVSY----ASSRAPDDLDTRLLRA 429 (600)
Q Consensus 356 l~~~l~g~~~~~~vn~~~i~~~~~~~~~--p~~~la~~lG~l~~qL~~g~~~~k~v~i~~----~Gs~a~~~~~~~~~~~ 429 (600)
+.++++| .......|..|++.+..++ ||+. +..+..+-..+.++ +|++.++.. .+++. +|.++...|.
T Consensus 107 ~~~l~~G--~~~~~~t~eeHD~~~A~ishLpH~i-a~al~~~~~~~~t~--~fr~l~ria~~~~~~~p~-lw~dI~~~N~ 180 (197)
T PRK06444 107 INEMFRG--YHFVEMTADEHDLLMSEIMVKPYII-SMILKDIKSDIKTG--SFDKLLEVSEIKEKENWE-VFNDTIIYNP 180 (197)
T ss_pred HHHHHcC--CEEEEeCHHHHHHHHHHHHHHHHHH-HHHHccCCCCCCCc--cHHHHHHHHHHhccCCHH-HHHHHHHHCc
Confidence 5555664 4555667888888888887 7763 22222221244444 688777666 77776 8888877776
Q ss_pred HHHHhhchhhh
Q 007512 430 MITKGLIEPIS 440 (600)
Q Consensus 430 a~l~GlL~~~~ 440 (600)
-. +.+..+.
T Consensus 181 ~a--~~~~~~~ 189 (197)
T PRK06444 181 YT--NVINDLI 189 (197)
T ss_pred hH--HHHHHHH
Confidence 54 4454433
No 93
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.42 E-value=5.9e-07 Score=93.49 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=68.5
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+|+|||.| .+|+.+|.+|...|+.|..|++... ++.++.++||+|+++++.. +++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcc
Confidence 4679999999999996 9999999999999999999986542 5889999999999999944 345
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|-..
T Consensus 217 ~~~~---ik~GaiVIDvgin~ 234 (301)
T PRK14194 217 DADW---LKPGAVVIDVGINR 234 (301)
T ss_pred cHhh---ccCCcEEEEecccc
Confidence 5443 79999999998543
No 94
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.42 E-value=4.1e-06 Score=88.02 Aligned_cols=109 Identities=22% Similarity=0.327 Sum_probs=70.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----cC--------------Ccc-cCHHHHhccCCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----IG--------------VDL-VSFDEAIATADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----~g--------------~~~-~~l~ell~~aDvV~ 256 (600)
++|+|||+|.||+++|..+...|++|++||++.. .+.+.+ .+ +.. .++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999988999999998762 222221 12 122 35778899999999
Q ss_pred EecCCCcccc-ccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEE
Q 007512 257 LHMPLTPATS-KVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQA 309 (600)
Q Consensus 257 l~~Pl~~~t~-~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga 309 (600)
+|+|...+.. .++ .+.-..++++++|+....|- ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg~--~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSGL--PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCCC--CHHHHHhhcCCcccEEEE
Confidence 9999654323 333 22223467777764333332 34566665543 344343
No 95
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.42 E-value=7.4e-06 Score=91.20 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=113.9
Q ss_pred CceEEE-EcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCC--h--------HHHHHHHHHHH
Q 007512 98 LCDALI-VRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN--T--------VAAAEHGIALL 166 (600)
Q Consensus 98 ~~d~li-~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~--~--------~~vAE~~l~ll 166 (600)
++|+++ ++ +.+.+.++.++++--+|+...-.-|.=-++++.++||.+..--... + .++++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578766 33 2344556666666677777665555444688889999887633211 1 1122222
Q ss_pred HHHHhchHHHHHHHHcCcccccc-ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-
Q 007512 167 AAMARNVAQADASVKAGKWQRNK-YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV- 243 (600)
Q Consensus 167 l~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~- 243 (600)
-.|-+.++.+.+ |++.... ..-..+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+
T Consensus 137 --Gy~Avi~Aa~~l--gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~ 212 (511)
T TIGR00561 137 --GYRAIIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE 212 (511)
T ss_pred --HHHHHHHHHHHh--hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEe
Confidence 122222221111 1111100 00013457899999999999999999999999999999887 4566677776541
Q ss_pred -C--------------------------HHHHhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEccC
Q 007512 244 -S--------------------------FDEAIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 244 -~--------------------------l~ell~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+ +.+.++++|+|+.++ |-. ....++.++.++.||+|+++||++-
T Consensus 213 v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~-~aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 213 LDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGK-PAPKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred ccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCC-CCCeeehHHHHhhCCCCCEEEEeee
Confidence 1 345678899998887 221 1346789999999999999999974
No 96
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.41 E-value=5.2e-06 Score=86.58 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=77.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH--------------cCC-------------ccc-CHHHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA--------------IGV-------------DLV-SFDEA 248 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~--------------~g~-------------~~~-~l~el 248 (600)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999998762 221111 111 111 34 56
Q ss_pred hccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCC
Q 007512 249 IATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEE 317 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~E 317 (600)
+++||+|+.|+|...+.+.-+-++.-..++++++|+.+.+|- ....+.+.+.. .++ .+++-|.+-
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~P~ 148 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFNPA 148 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCCCc
Confidence 799999999999665444433334445578999998877764 44556555543 344 455555443
No 97
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.41 E-value=6.9e-07 Score=96.36 Aligned_cols=94 Identities=23% Similarity=0.372 Sum_probs=74.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-HHcCCc-------ccCHHHHhccCCEEEEecCCC-c
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-RAIGVD-------LVSFDEAIATADFISLHMPLT-P 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-~~~g~~-------~~~l~ell~~aDvV~l~~Pl~-~ 263 (600)
.+.++++.|+|.|.+|+.+++.++.+|++|.++|++... +.+ ...+.. ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 367789999999999999999999999999999987522 222 223321 124677889999999998653 2
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
.+..+++++.++.||++++|+|++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 356688999999999999999997
No 98
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.41 E-value=3.1e-06 Score=94.99 Aligned_cols=116 Identities=24% Similarity=0.294 Sum_probs=83.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|||||+|.||+.||..+...|++|+.||+... .+.+ .+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6899999999999999999988999999998763 2221 2334 222 35655 679
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEE-EEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRI-INVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPP 319 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gail-vNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~ 319 (600)
||+|+-|+|...+.+..+-.+.-..++++++| +|++.-.+ ..+..++.. .++ .|++.|.+-|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p~r~--~G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHPERV--AGLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCcccE--EEEeecCCccc
Confidence 99999999988887776655544457899999 69987665 245555443 344 56676764443
No 99
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.40 E-value=6.3e-07 Score=92.71 Aligned_cols=102 Identities=20% Similarity=0.346 Sum_probs=75.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC----EEEEECCCCC-hhHHH-HcCCccc-CHHHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM----HVIAHDPYAP-ADRAR-AIGVDLV-SFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~----~V~~~d~~~~-~~~a~-~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.++|||||+|+||+++++.|...|+ +|++||+... .+.+. +.|+... +..+++.+||+|++|+| ......++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl 80 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI 80 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH
Confidence 3589999999999999999986553 7999998763 33333 3677543 67888999999999999 45556555
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
. +....++++.++|++.-|- +.+.|.+.+.
T Consensus 81 ~-~l~~~~~~~~lvISi~AGi--~i~~l~~~l~ 110 (272)
T PRK12491 81 N-QIKDQIKNDVIVVTIAAGK--SIKSTENEFD 110 (272)
T ss_pred H-HHHHhhcCCcEEEEeCCCC--cHHHHHHhcC
Confidence 3 3334468889999998775 4566655554
No 100
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.39 E-value=1.3e-06 Score=70.19 Aligned_cols=71 Identities=30% Similarity=0.593 Sum_probs=62.1
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+|.+...|+||+++.++..|+++++||.+|.......++.+.+.+.+++...++++++|++++++.+++++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46778999999999999999999999999987653346678888999988788999999999999999875
No 101
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=98.39 E-value=1.2e-06 Score=70.20 Aligned_cols=70 Identities=34% Similarity=0.584 Sum_probs=62.6
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEEe
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~i 598 (600)
+.+...|+||+++.|+++|+++++||.++...+...++.+.+.+.+++....+++++|+++++|.+++++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6778999999999999999999999999999765445788899999888777999999999999999874
No 102
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.38 E-value=2.1e-06 Score=80.42 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.2
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh-h-HHHHcCC-----cccCHHHHhccCCEEEEecCCCcc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA-D-RARAIGV-----DLVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~-~-~a~~~g~-----~~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+.+++++|+|.|.||+.+++.+...| .+|.++|++... + .+.+.+. ...+++++++++|+|++|+|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3466899999999999999999999885 789999987632 2 2333342 344777889999999999996653
Q ss_pred -ccc-cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 265 -TSK-VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 265 -t~~-li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
... .+.. ..++++.+++|++..+... .+.+.+++.
T Consensus 95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 112 2222 2368999999998765432 565555554
No 103
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.36 E-value=6.2e-06 Score=92.41 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=72.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHH-------------------HcC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRAR-------------------AIG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aDvV 255 (600)
++|||||+|.||+.+|..+...|++|.+||+.... +... ..| +.. .++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997632 1111 112 333 3788999999999
Q ss_pred EEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 256 SLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+.|+|...+.+..+-.+.-..++++++| +++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977655554333344457888754 5544443 34566665544
No 104
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.35 E-value=3.3e-06 Score=92.35 Aligned_cols=101 Identities=24% Similarity=0.289 Sum_probs=70.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHH--------------------cC-Ccc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA--------------------IG-VDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~--------------------~g-~~~-~~l~ell~~aDvV 255 (600)
++|||||+|.+|..+|..|...|++|++||++...-.... .| +.. .++++++++||+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998763221111 23 222 3678889999999
Q ss_pred EEecCCCccc------cccc--cHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 256 SLHMPLTPAT------SKVL--NDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 256 ~l~~Pl~~~t------~~li--~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
++|+|..... ..+. -......+++|.++|+++.-.+=..+.+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 9999954321 1121 13345568999999999864443344454
No 105
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.28 E-value=2.4e-06 Score=88.60 Aligned_cols=102 Identities=14% Similarity=0.161 Sum_probs=73.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-h-hH-HHHcCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-A-DR-ARAIGVDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~-~~-a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+++|||||+|.||+++|+.|...| .+|++||+... . +. ....|+.. .+..+++.+||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 468999999999999999998766 78999998652 1 22 23347654 367888999999999999 4444444
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
+ ......++++.+||++..|- ..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 33344567899999986553 4555555443
No 106
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.27 E-value=1.2e-05 Score=90.04 Aligned_cols=117 Identities=22% Similarity=0.230 Sum_probs=81.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------c-ccCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADR-----------ARAIGV-------------D-LVSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~-----------a~~~g~-------------~-~~~l~ell~~ 251 (600)
++|||||+|.||+.||..+...|++|..||++.. .+. ..+.|. . ..++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999998762 221 122231 1 235655 579
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhcCCceEEEEeccCCCCC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~ 319 (600)
||+|+.|+|-..+.+..+-.+.-..++++++|. |++.-.+ ..+.+++.. .-...|++.|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999887777665555445688888876 7765444 345555543 222367777765544
No 107
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=2.6e-06 Score=88.16 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=69.1
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++.+. -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467999999999999999 9999999999999999886432 257889999999999999 35678
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+. +.+|+|+++||+|-..
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 76 4479999999998544
No 108
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.24 E-value=3e-06 Score=87.60 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=73.9
Q ss_pred CCEEEEEecChhHHHHHHHhhc--CCCEEE-EECCCCCh--hHHHHcCC--cccCHHHHhccCCEEEEecCCCccccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG--LGMHVI-AHDPYAPA--DRARAIGV--DLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~--~g~~V~-~~d~~~~~--~~a~~~g~--~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
..+|||||+|.||+.+++.+.. .++++. +||+.... +.+...|. .+.+++++++++|+|++|+|... ..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~--h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASV--LRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHH--HHHH
Confidence 4789999999999999999985 488886 57876532 23344453 24589999999999999999442 2112
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
. ...++.|.-++..+.+.+.+.++|.++.+++
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHc
Confidence 2 2334666666667788877788888877664
No 109
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.22 E-value=1.6e-06 Score=69.01 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=56.5
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC-CCcEEEEEEeCCCCcHHHHHHHhcCCC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP-RKHAVMAIGVDEQPRKETLKKIGDVPA 591 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~-g~~al~~i~~D~~~~~~~l~~l~~~~~ 591 (600)
|.+.+..+|+||+++.|+++|+++|+||..+...+... ....++.+..|....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 46778899999999999999999999999999998766 445778888888889999999998764
No 110
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.20 E-value=4.1e-06 Score=87.29 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.+.. ++++++++||+|+++++..+ ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999964321 47889999999999999543 34
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---lk~GavVIDvGin~ 233 (296)
T PRK14188 216 KGDW---IKPGATVIDVGINR 233 (296)
T ss_pred chhe---ecCCCEEEEcCCcc
Confidence 4433 89999999998544
No 111
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.19 E-value=5.1e-06 Score=88.06 Aligned_cols=87 Identities=29% Similarity=0.373 Sum_probs=68.1
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------C------Cc-ccCHHHHhccCCEEEEecC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------G------VD-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------g------~~-~~~l~ell~~aDvV~l~~P 260 (600)
.++|+|||+|.||..+|.+|...|++|.+|+++.. .+..... | +. ..++++.++.||+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 35899999999999999999999999999999753 2222222 3 21 2378888899999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCC
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
... + ++.++.++++.++++++.|
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeec
Confidence 553 2 5556778999999999987
No 112
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.17 E-value=3.6e-06 Score=88.61 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=68.3
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------------CCcc-cCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------------GVDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------------g~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||+|.||..+|.+|...|.+|.+||+... .+..... ++.. .++++.+++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998752 2333332 2222 3677889999999999995
Q ss_pred CccccccccHhHhccCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
..+..++. .....++++.++|++..|-
T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecc
Confidence 44555553 3445578899999997553
No 113
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=1.1e-05 Score=80.27 Aligned_cols=115 Identities=21% Similarity=0.308 Sum_probs=89.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-cCHHHH---hccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-VSFDEA---IATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++||.||||+||..++++|+..|.+|++||.++ ..+.+...|+.. .+++++ |..--+|-+.+|-.+-|..+++ +
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence 479999999999999999999999999999988 456677777653 366665 5667999999998866666664 3
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccC
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT 315 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~ 315 (600)
.-..|.+|=++||-+...--|....++.|++..| ..+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 4556889999999877665565556666777766 5666644
No 114
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=5.7e-06 Score=85.60 Aligned_cols=81 Identities=22% Similarity=0.278 Sum_probs=67.2
Q ss_pred cceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||+++|||. |.+|+.+|.+|...|+.|..|.... .++.+..++||+|+.+++.. +++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccC
Confidence 467999999999999 9999999999999999999995332 15888999999999999944 345
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.... +|+|+++||+|--.
T Consensus 216 ~~~~---ik~GavVIDvgin~ 233 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGMNR 233 (284)
T ss_pred CHHH---ccCCcEEEEeccee
Confidence 5543 79999999998433
No 115
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.12 E-value=5.7e-05 Score=77.55 Aligned_cols=99 Identities=23% Similarity=0.323 Sum_probs=67.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCC---CEEEEECCCC-ChhHHHH-cCCcc-cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG---MHVIAHDPYA-PADRARA-IGVDL-VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g---~~V~~~d~~~-~~~~a~~-~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|+|||+|.||+.+++.+...| .+|.+||++. ..+...+ .|+.. .+.++++.+||+|++|+|. .....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH
Confidence 58999999999999999998777 7899999876 2233333 36644 3677888999999999983 334443322
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
....+ +..|+.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 12223 35666665543 4556655554
No 116
>TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein.
Probab=98.10 E-value=1.2e-05 Score=87.38 Aligned_cols=135 Identities=16% Similarity=0.002 Sum_probs=86.3
Q ss_pred CceEEEEEEeecCCCCccccccccHHHHHhhchhhhccchhhccH------------HHHHhhcCceEEEEEeec-C-CC
Q 007512 405 GVKTVKVSYASSRAPDDLDTRLLRAMITKGLIEPISDVFVNLVNA------------DYTAKQRGLRLTEERILL-D-GS 470 (600)
Q Consensus 405 ~~k~v~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vnA------------~~~A~e~GI~v~~~~~~~-~-~~ 470 (600)
.+++++++++|||+ .|.++|++|+|++.||++ +.+++++.... +.++.+++|.+.+..... . ..
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G-~~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAG-IYPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcC-CCCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 999999999999999994 44555655533 334556788776543211 0 11
Q ss_pred CCCCCceEEEEEeecccccccccCCCcE-EEEEE-EEeCCceEEEEEcceEEEeecCccEEEEEecCCC---CChhhHHh
Q 007512 471 PESPLEFIQVQIANVESKFASAISESGE-IKVEG-RVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQP---GMIGTVGS 545 (600)
Q Consensus 471 ~~~~~n~i~v~~~~~~~~~~~~~~~~~~-~~v~G-sv~gG~~~I~~Idgf~v~~~g~~~~Liv~~~D~p---G~Ia~V~~ 545 (600)
...|||+++++..+ .++.. .+.++ ||+||.++.-+=.+.+. .. ..+.| -....+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~~~~~~~~---~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTEKHFGSEE---DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeecccccccc---cc-------CCCCCcCCCCHHHHHH
Confidence 12699999999985 23333 47888 88888776432111110 00 01222 22444666
Q ss_pred hhhcCCccccceEee
Q 007512 546 ILGSENVNVSFMSVG 560 (600)
Q Consensus 546 iL~~~~INIa~m~v~ 560 (600)
...++++.|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 667788888877554
No 117
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.08 E-value=2.1e-05 Score=85.46 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=82.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-----------------CCcc---cCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAI-----------------GVDL---VSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-----------------g~~~---~~l~ell~~aDvV~l 257 (600)
++|+|||+|.+|..+|..+. .|++|++||.+...-..... +... .+..++.++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997766 49999999987633222122 2222 135677899999999
Q ss_pred ecCCCcccc-cccc-----H--hHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCC---Cccc
Q 007512 258 HMPLTPATS-KVLN-----D--ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPAD---SKLV 326 (600)
Q Consensus 258 ~~Pl~~~t~-~li~-----~--~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~---~~L~ 326 (600)
|+|...+-+ +..+ . +.+..+++|.++|+.+.-.+=..+.+.+.+.+..+ +|.+|.+... +.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~ 153 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNL 153 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCccccccc
Confidence 999542111 1111 1 22333799999999998776567777666655333 1456654322 3455
Q ss_pred cCCcEEE
Q 007512 327 QHERVTV 333 (600)
Q Consensus 327 ~~~nvil 333 (600)
..|.+++
T Consensus 154 ~p~rvv~ 160 (388)
T PRK15057 154 HPSRIVI 160 (388)
T ss_pred CCCEEEE
Confidence 5566643
No 118
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.07 E-value=3.6e-05 Score=85.98 Aligned_cols=186 Identities=19% Similarity=0.234 Sum_probs=113.9
Q ss_pred CceEEE-EcCCCCCCHHHHhccCCCceEEEEcCcccCccChhHHHhCCceeecCCCCC--hHHHHHHHHHHHHH--HHhc
Q 007512 98 LCDALI-VRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTAN--TVAAAEHGIALLAA--MARN 172 (600)
Q Consensus 98 ~~d~li-~~~~~~~~~~~l~~~~~~Lk~I~~~g~G~d~iD~~aa~~~GI~V~n~p~~~--~~~vAE~~l~lll~--~~R~ 172 (600)
++|+++ ++. .+.+.++.++++--+|+......|.=-++++.++||.+..-.... +++-.=.+++-|-. -.|-
T Consensus 65 ~~diilkV~~---P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVNA---PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeCC---CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578777 432 344556666666677777766555555788899999887632211 00000011111111 1222
Q ss_pred hHHHHHHHHcCcccccc-ccceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--CH---
Q 007512 173 VAQADASVKAGKWQRNK-YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--SF--- 245 (600)
Q Consensus 173 i~~~~~~~~~g~W~~~~-~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~l--- 245 (600)
+..+.+.. ++..... .......|.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|.+.+ +.
T Consensus 142 v~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 22221111 1111100 00013469999999999999999999999999999999987 5677888887632 11
Q ss_pred -----------------------HHHhccCCEEEEecCCCcc-ccccccHhHhccCCCceEEEEccC
Q 007512 246 -----------------------DEAIATADFISLHMPLTPA-TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 246 -----------------------~ell~~aDvV~l~~Pl~~~-t~~li~~~~l~~mk~gailvNvar 288 (600)
.+.+..+|+|+.|+..... ...++.++.++.||+|.+++|+|-
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1112569999999864221 234557889999999999999983
No 119
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.06 E-value=1.9e-05 Score=82.35 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=71.7
Q ss_pred HHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|+.+|++|...|++|++||++... +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986531 23566787655 68999999999999999877777777 45788899999
Q ss_pred EEEEccCCccccHHHHHHhHhc
Q 007512 282 RIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 282 ilvNvarg~ivde~aL~~aL~~ 303 (600)
++||++.... +.++..|+.
T Consensus 111 IVID~STIsP---~t~~~~~e~ 129 (341)
T TIGR01724 111 VICNTCTVSP---VVLYYSLEK 129 (341)
T ss_pred EEEECCCCCH---HHHHHHHHH
Confidence 9999977554 444444443
No 120
>PRK07680 late competence protein ComER; Validated
Probab=98.06 E-value=8.6e-06 Score=84.15 Aligned_cols=100 Identities=13% Similarity=0.230 Sum_probs=71.5
Q ss_pred EEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-hhHHHH-c-CCccc-CHHHHhccCCEEEEecCCCcccccccc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-ADRARA-I-GVDLV-SFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~~~a~~-~-g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
+|||||+|.||+.+++.|...| .+|.+||++.. .+...+ . |+... +..+++.+||+|++|+| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998776 37999998762 222222 2 55443 67888999999999998 33345544
Q ss_pred HhHhccCCCceEEEEccCCccccHHHHHHhHh
Q 007512 271 DETFGKMKKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 271 ~~~l~~mk~gailvNvarg~ivde~aL~~aL~ 302 (600)
+.....++++.+||+++-|- ..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSPI--SVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 23334577888999998543 5666655544
No 121
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.06 E-value=1e-05 Score=82.85 Aligned_cols=99 Identities=16% Similarity=0.269 Sum_probs=69.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCC---EEEEECCCCCh-hHH-HHc-CCcc-cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM---HVIAHDPYAPA-DRA-RAI-GVDL-VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~---~V~~~d~~~~~-~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
+|||||+|+||+++++.|...|. .+.+||++... +.. ... ++.. .+.++++++||+|++|+| .+....++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999986664 35788876522 222 223 3543 478888999999999999 4444444432
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+ .++++.++|.+.- + +..+.|.+.++.
T Consensus 81 --l-~~~~~~~vis~~a-g-~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIA-A-TDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECC-C-CCHHHHHHHhCC
Confidence 3 2578889999873 3 467777666654
No 122
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.05 E-value=1.8e-05 Score=76.16 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=68.6
Q ss_pred eeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..+.||++.|||.|.+ |..+|+.|...|.+|...+++. .++.+.+.+||+|+.+++.. ++++.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 4789999999999996 8889999999999999888753 24778899999999999843 26777
Q ss_pred hHhccCCCceEEEEccCCcccc
Q 007512 272 ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivd 293 (600)
+. ++++.++||+|...-+|
T Consensus 104 ~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred HH---ccCCeEEEEccCCCccc
Confidence 64 58899999999877666
No 123
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.01 E-value=1.1e-05 Score=82.75 Aligned_cols=88 Identities=25% Similarity=0.408 Sum_probs=70.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-CCCC-ChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-DPYA-PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
-|.||||+|||||.-|..=|..|+..|.+|++- .+.. +-+.|.+.|++..+.+|+.++||+|.+-+|... -..++.+
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 689999999999999999999999999988653 3333 467899999999999999999999999999443 3334444
Q ss_pred hHhccCCCceE
Q 007512 272 ETFGKMKKGVR 282 (600)
Q Consensus 272 ~~l~~mk~gai 282 (600)
+.-..||+|..
T Consensus 94 ~I~p~Lk~G~a 104 (338)
T COG0059 94 EIAPNLKEGAA 104 (338)
T ss_pred HhhhhhcCCce
Confidence 55555777663
No 124
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.00 E-value=7.3e-05 Score=77.71 Aligned_cols=163 Identities=16% Similarity=0.213 Sum_probs=111.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHh-ccCCEEEEecCCCccccccccHhHh
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAI-ATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
-.+|||||+|.+|+-+|+.+...|..++.+|+....+.+...|.. +..+.+++ +..|+|.+|+.-. .+..++-.--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsil-siekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSIL-SIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehhh-hHHHHHHhcCc
Confidence 358999999999999999999999999999987755666777775 34577776 4699999998732 34455544456
Q ss_pred ccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 007512 275 GKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAE 354 (600)
Q Consensus 275 ~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~~~~~~ 354 (600)
+.+|.|++++++-+-+...-+++.+-|.+-.-.=..=-.|+++ ..++.+-.+|-|+.--.+|.. +...+-.+
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk--svnh~wqglpfVydkvRig~~------~~r~ercE 202 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK--SVNHEWQGLPFVYDKVRIGYA------ASRPERCE 202 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC--cCCCccccCceEEEEeecccc------ccchHHHH
Confidence 7799999999999888777777777776643212222235555 456677778888776655421 11123335
Q ss_pred HHHHHHcCCCCCcc
Q 007512 355 AVVGALKGELAATA 368 (600)
Q Consensus 355 ~l~~~l~g~~~~~~ 368 (600)
-+.+.+.......+
T Consensus 203 ~fleIf~cegckmV 216 (480)
T KOG2380|consen 203 FFLEIFACEGCKMV 216 (480)
T ss_pred HHHHHHHhcCCeEE
Confidence 55555555444433
No 125
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.97 E-value=2.2e-05 Score=76.67 Aligned_cols=134 Identities=21% Similarity=0.222 Sum_probs=71.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCC---------------------cc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV---------------------DL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~---------------------~~-~~l~ell~~aDvV 255 (600)
++|+|||+|.+|..+|..+...|++|++||.+...-.....|. .. .+.++.+.+||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 5899999999999999999999999999997653222222221 11 2566778999999
Q ss_pred EEecCCCcccc-ccccH--------hHhccCCCceEEEEccCCccccHH-HHHHhHhcCCceEEEEe-ccCCCCCCCC--
Q 007512 256 SLHMPLTPATS-KVLND--------ETFGKMKKGVRIINVARGGVIDEE-ALVRALDSGRVAQAALD-VFTEEPPPAD-- 322 (600)
Q Consensus 256 ~l~~Pl~~~t~-~li~~--------~~l~~mk~gailvNvarg~ivde~-aL~~aL~~g~i~ga~lD-v~~~EP~~~~-- 322 (600)
++|+| ||... +..|- .....++++.++|.-+.-.+=..+ -+...|++..-.+.-.+ +|-+|=+...
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a 159 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRA 159 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCc
Confidence 99999 44222 22222 334458999999999876554444 23334443110000000 1445533322
Q ss_pred -CccccCCcEE
Q 007512 323 -SKLVQHERVT 332 (600)
Q Consensus 323 -~~L~~~~nvi 332 (600)
..+...+++|
T Consensus 160 ~~d~~~~~rvV 170 (185)
T PF03721_consen 160 IEDFRNPPRVV 170 (185)
T ss_dssp HHHHHSSSEEE
T ss_pred chhccCCCEEE
Confidence 3566778885
No 126
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.95 E-value=3.4e-05 Score=82.03 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=73.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc-----------------cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL-----------------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~-----------------~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.||+.+|.+|...|.+|.+||+....+...+.|... .+-.+.++.+|+|++++|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence 579999999999999999998899999999754333334444321 112256789999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.. +....+ +.....++++.+|+++..| +-..+.+.+.+...++
T Consensus 83 ~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 83 SA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred Cc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 44 445444 3344557889999988654 3345566666665544
No 127
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.94 E-value=2.5e-05 Score=80.99 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=68.2
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.||++.|||.|. +|+.+|..|...|++|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 45689999999999998 99999999999999999987642 2578899999999999984 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+. +|+|+++||+|-..
T Consensus 216 ~~~~---vk~gavVIDvGi~~ 233 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNTP 233 (286)
T ss_pred CHHH---cCCCcEEEEcCCCc
Confidence 7754 69999999998543
No 128
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.92 E-value=3e-05 Score=75.36 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=77.4
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcCC-------------cc-cCHHHHhccC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIGV-------------DL-VSFDEAIATA 252 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g~-------------~~-~~l~ell~~a 252 (600)
+|+|||.|.||+.+|..+...|++|..||++.. .+.+ .+.|. .+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998763 2111 11111 11 3677777 99
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCcE
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHERV 331 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~nv 331 (600)
|+|+=++|-..+.+.-+-++.-+.++++++|...+++= ....|...+.. .++ .|++.|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 99999999777766655566666688998887665543 34555555543 345 5666664 33 2456765 4
Q ss_pred EEcCC
Q 007512 332 TVTPH 336 (600)
Q Consensus 332 ilTPH 336 (600)
+..|+
T Consensus 150 v~~~~ 154 (180)
T PF02737_consen 150 VPGPK 154 (180)
T ss_dssp EE-TT
T ss_pred eCCCC
Confidence 44444
No 129
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.91 E-value=4.9e-05 Score=78.83 Aligned_cols=105 Identities=13% Similarity=0.224 Sum_probs=71.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCCh--hHH-HHc-CCc-ccCHHHHhccCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPA--DRA-RAI-GVD-LVSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~--~~a-~~~-g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
.+|+|||+|.||+.+++.+...| .+|++|+++... ... ... ++. ..+..+++.+||+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998766 689999876422 111 122 233 2467888999999999999 3334443
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+ .+....++++..||.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 2222346778899998777 456677665543334
No 130
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.89 E-value=3.2e-05 Score=61.95 Aligned_cols=69 Identities=12% Similarity=0.284 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v 595 (600)
|+|.+...|+||+++.++++|+++++||..+...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654346667788887753 344778899999988776
No 131
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.88 E-value=3.8e-05 Score=75.64 Aligned_cols=88 Identities=28% Similarity=0.389 Sum_probs=63.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h--HHHHcC--CcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D--RARAIG--VDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~--~a~~~g--~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
++++|+|.|+||+.+|++|...|.+|+.-.++.+. . .+...+ ++..+.++..+.||+|++++|... .... .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 58999999999999999999999999887655432 2 222333 234578999999999999999654 2222 234
Q ss_pred HhccCCCceEEEEccC
Q 007512 273 TFGKMKKGVRIINVAR 288 (600)
Q Consensus 273 ~l~~mk~gailvNvar 288 (600)
....++ |.++||+.-
T Consensus 80 l~~~~~-~KIvID~tn 94 (211)
T COG2085 80 LRDALG-GKIVIDATN 94 (211)
T ss_pred HHHHhC-CeEEEecCC
Confidence 444454 789998864
No 132
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.86 E-value=2.2e-05 Score=72.65 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=69.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCCCh--hHHHHc---CCcc---cCHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYAPA--DRARAI---GVDL---VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~~~--~~a~~~---g~~~---~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.|+++.|||.|.+|+.++..|...|++ |..+++.... ..+... .+.. .++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 78999999999999999999999999985 9999987522 223333 2222 356667899999999999653
Q ss_pred ccccccHhHhccCCCce-EEEEccCCc
Q 007512 265 TSKVLNDETFGKMKKGV-RIINVARGG 290 (600)
Q Consensus 265 t~~li~~~~l~~mk~ga-ilvNvarg~ 290 (600)
..+.++.+...++.. +++|.+...
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~Pr 112 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVPR 112 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred --cccCHHHHHHHHhhhhceeccccCC
Confidence 367888887665544 899997543
No 133
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.85 E-value=1.8e-05 Score=72.50 Aligned_cols=90 Identities=22% Similarity=0.414 Sum_probs=54.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEE-CCCC-ChhHHHH-cC-CcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-DPYA-PADRARA-IG-VDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
...+|||||.|++|..+++.|+..|+.|.++ ++.. +.+++.. .+ ....++++++.+||++++++|... ...+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHHHH-H
Confidence 3568999999999999999999999999886 4433 2233322 22 234578899999999999999543 33332 2
Q ss_pred hHhcc--CCCceEEEEcc
Q 007512 272 ETFGK--MKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~--mk~gailvNva 287 (600)
..-.. .++|.+++-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 22222 68999999985
No 134
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.85 E-value=6.9e-05 Score=63.76 Aligned_cols=67 Identities=33% Similarity=0.486 Sum_probs=56.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
..+.+++++|+|.|.+|+.++..+... +.+|..||+ |+++.++|.. +.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchH
Confidence 457899999999999999999999987 678999987 9999999843 34555
Q ss_pred hHhccCCCceEEEEcc
Q 007512 272 ETFGKMKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~mk~gailvNva 287 (600)
+....++++++++|++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5677899999999974
No 135
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.83 E-value=6.8e-05 Score=71.46 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=59.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.++..|...|+.|..++.+. .++++.+++||+|+.+++. .+++
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999988663 2478889999999999983 4556
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..+ .+|+|+++||+|.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 655 3599999999987554
No 136
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.81 E-value=2.2e-05 Score=78.33 Aligned_cols=127 Identities=13% Similarity=0.220 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHh--hcCCCEEEE-ECCCCChhHH
Q 007512 159 AEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA--KGLGMHVIA-HDPYAPADRA 235 (600)
Q Consensus 159 AE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l--~~~g~~V~~-~d~~~~~~~a 235 (600)
++|.+..++...|++.. |. ..++++|||+|.+|+.+++.+ ...|+++.+ +|+++.....
T Consensus 64 ~gy~v~~l~~~~~~~l~---------~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~ 125 (213)
T PRK05472 64 VGYNVEELLEFIEKILG---------LD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT 125 (213)
T ss_pred CCeeHHHHHHHHHHHhC---------CC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC
Confidence 34888888888886652 22 245899999999999999863 356899887 5665321110
Q ss_pred HHcCCc---ccCHHHHhcc--CCEEEEecCCCcc---ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 236 RAIGVD---LVSFDEAIAT--ADFISLHMPLTPA---TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 236 ~~~g~~---~~~l~ell~~--aDvV~l~~Pl~~~---t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.-.|+. ..++.+++++ .|.+++|+|.... ...+.......-|...++.+|+.+|.+++.++|..+|..
T Consensus 126 ~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 126 KIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 111221 2357777765 9999999997653 122222223333566678899999999999988887764
No 137
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.78 E-value=4.5e-05 Score=76.27 Aligned_cols=90 Identities=26% Similarity=0.249 Sum_probs=61.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHH--------cCC----cccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARA--------IGV----DLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~--------~g~----~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+||| .|.||+.+|+.|...|.+|..++++... +.... .|+ ...+..+.+++||+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 4799997 9999999999999889999999886522 11111 122 1236678899999999999944
Q ss_pred cccccccHhHhccCCCceEEEEccCCc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
....++. ..-..++ +.++|++.-|-
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ngi 104 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVPL 104 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccCc
Confidence 2333332 1112233 47999997653
No 138
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.77 E-value=0.00029 Score=75.17 Aligned_cols=143 Identities=23% Similarity=0.257 Sum_probs=87.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--------------------HHHcC-CcccCHHHHhccCCEEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--------------------ARAIG-VDLVSFDEAIATADFIS 256 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--------------------a~~~g-~~~~~l~ell~~aDvV~ 256 (600)
.+|||||||-||-.+|..+...|++|+|||-+...-. +.+.| .+..+--+.++.||+++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence 6999999999999999999999999999997642221 12222 12221123456999999
Q ss_pred EecCCCccccc-ccc--------HhHhccCCCceEEEEccCCccccHHHHHHhHhcC--CceEEEEec---cCCCCCCC-
Q 007512 257 LHMPLTPATSK-VLN--------DETFGKMKKGVRIINVARGGVIDEEALVRALDSG--RVAQAALDV---FTEEPPPA- 321 (600)
Q Consensus 257 l~~Pl~~~t~~-li~--------~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g--~i~ga~lDv---~~~EP~~~- 321 (600)
+|+| ||-+.+ --+ +..-.-||+|.++|==+....=..+.++..+.+. .+ ..+-|. |.+|-..+
T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436)
T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436)
T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC
Confidence 9999 553332 111 1123348999988877764443455554444332 11 122332 34443222
Q ss_pred --CCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 322 --DSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 322 --~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
...+.++|+| +||.|+++-+.
T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred chhhhhhcCCce-----eecCCHHHHHH
Confidence 3456678888 78888776543
No 139
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.75 E-value=9.4e-05 Score=78.41 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=64.0
Q ss_pred EEEEecChhHHHHHHHhhcC-CCEEEEE-CCCCCh--hHHHHcCCcc-------------------cCHHHHhccCCEEE
Q 007512 200 LAVLGFGKVGSEVARRAKGL-GMHVIAH-DPYAPA--DRARAIGVDL-------------------VSFDEAIATADFIS 256 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~~~~--~~a~~~g~~~-------------------~~l~ell~~aDvV~ 256 (600)
|||+|+|+||+.+++.+... ++++++. |+.+.. ..+...|+.. .++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 69999999999999998744 7999875 433221 2333334321 15889999999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.|+| .+.+..+.+.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9977 446788999999999999998754
No 140
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.75 E-value=6.6e-05 Score=71.21 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=61.4
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcC--------C------c-ccCHHHHhccCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG--------V------D-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g--------~------~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
+|+|+|.|..|..+|..|...|.+|..|++... .+...+.+ + . ..+++++++.||+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999999999999999998752 12111111 1 1 137899999999999999944
Q ss_pred ccccccccHhHhccCCCceEEEEccCC
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
. .+.++ ++....++++..++++..|
T Consensus 81 ~-~~~~~-~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 A-HREVL-EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp G-HHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred H-HHHHH-HHHhhccCCCCEEEEecCC
Confidence 3 34333 3344457889999999865
No 141
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.72 E-value=9.3e-05 Score=76.34 Aligned_cols=101 Identities=15% Similarity=0.240 Sum_probs=65.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEE-EECCCCCh-h-HHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVI-AHDPYAPA-D-RARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~-~~d~~~~~-~-~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+|||||+|.||+.+++.+... ++++. ++|++... + .+...+.. +.++++++.++|+|++|+|... .. +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~-~~----~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNA-VE----E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHH-HH----H
Confidence 4799999999999999998864 57754 58887632 2 22334444 3479999999999999998332 11 1
Q ss_pred hHhccCCCceEEEEccCCccccH---HHHHHhHhc
Q 007512 272 ETFGKMKKGVRIINVARGGVIDE---EALVRALDS 303 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde---~aL~~aL~~ 303 (600)
-....|+.|.-++..+-|.+.|. +.|.++.++
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 11223455555555666766653 345554444
No 142
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.72 E-value=9.9e-05 Score=77.89 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=66.5
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC--hhHHHHcCCccc---CHHHHhccCCEEEEecCCCcccccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP--ADRARAIGVDLV---SFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~--~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|.... ++.+.+.++|+|+.++|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 67999999999999999999999765 68999998763 245566666443 35677889999999999443 3222
Q ss_pred ccHhHhccC-CCceEEEEccC
Q 007512 269 LNDETFGKM-KKGVRIINVAR 288 (600)
Q Consensus 269 i~~~~l~~m-k~gailvNvar 288 (600)
+ +..++.. +++.+++|.+.
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 36788999885
No 143
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.71 E-value=0.00014 Score=71.04 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=69.7
Q ss_pred ccccccccceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHH--HHcCCcc---cC----HHHHhccCC
Q 007512 184 KWQRNKYVGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRA--RAIGVDL---VS----FDEAIATAD 253 (600)
Q Consensus 184 ~W~~~~~~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~g~~~---~~----l~ell~~aD 253 (600)
-|++....+.++.||++.|||-+. +|+.+|..|...|+.|..+|.+.-..+. .+..-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457899999999999985 6999999999999999999743211000 0000001 12 778999999
Q ss_pred EEEEecCCCcccccc-ccHhHhccCCCceEEEEccC
Q 007512 254 FISLHMPLTPATSKV-LNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 254 vV~l~~Pl~~~t~~l-i~~~~l~~mk~gailvNvar 288 (600)
+|+.+++. .++ +..+.+ |+|+++||+|-
T Consensus 129 IVIsAvG~----~~~~i~~d~i---k~GavVIDVGi 157 (197)
T cd01079 129 VVITGVPS----PNYKVPTELL---KDGAICINFAS 157 (197)
T ss_pred EEEEccCC----CCCccCHHHc---CCCcEEEEcCC
Confidence 99999993 344 666654 89999999983
No 144
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.70 E-value=8.2e-05 Score=71.38 Aligned_cols=95 Identities=26% Similarity=0.384 Sum_probs=68.8
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCc---c--------------------c----C
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVD---L--------------------V----S 244 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~---~--------------------~----~ 244 (600)
..+...++.|+|.|..|...++.++++|++|..+|.+.. .......+.. . . .
T Consensus 16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence 357778999999999999999999999999999998763 2233333321 1 0 3
Q ss_pred HHHHhccCCEEEEecC-CCccccccccHhHhccCCCceEEEEcc
Q 007512 245 FDEAIATADFISLHMP-LTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 245 l~ell~~aDvV~l~~P-l~~~t~~li~~~~l~~mk~gailvNva 287 (600)
|.+.++.+|+|+.++- -.+..-.++.++.++.|||+.+|+|++
T Consensus 96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6678899999986443 255677899999999999999999986
No 145
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.70 E-value=8.3e-05 Score=57.69 Aligned_cols=45 Identities=16% Similarity=0.355 Sum_probs=41.6
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
+..+|+||.++++++.|+++++||.+|.+.+.. ++.+++.+.+|.
T Consensus 3 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 3 VFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 578999999999999999999999999998765 788999999987
No 146
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.69 E-value=0.00012 Score=80.51 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=69.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh--hHHHHcCCcc---cCHHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA--DRARAIGVDL---VSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~--~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.|++++|||.|.||..+++.|+..| .+|+++++.... +.+...|... .++.+.+.++|+|+.|++.+ ..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~---~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAP---HP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCC---Cc
Confidence 477999999999999999999999999 789999987632 2444555432 35667889999999998733 45
Q ss_pred cccHhHhccCC----CceEEEEccC
Q 007512 268 VLNDETFGKMK----KGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~mk----~gailvNvar 288 (600)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67777776542 2458888874
No 147
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.67 E-value=0.00013 Score=75.57 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=66.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-|. +|+.+|..|...|+.|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987642 15888999999999999622 346
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+ .+|+|+++||+|-
T Consensus 217 ~~~---~vk~gavVIDvGi 232 (285)
T PRK10792 217 PGE---WIKPGAIVIDVGI 232 (285)
T ss_pred cHH---HcCCCcEEEEccc
Confidence 553 4699999999984
No 148
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.67 E-value=0.00017 Score=57.84 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=56.9
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhcCCCcceEEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~~~~v~~v~~ 597 (600)
+.+..+|+||+++++.+.|.++++||.+|..... .++.+.+.+.++.. ...+++++|++.+++..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE-REGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc-CCCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 5677899999999999999999999999987643 35567777888876 55589999999999988775
No 149
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=97.67 E-value=0.00012 Score=81.25 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=84.5
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc-----CCc-ccCHHHHhcc---CCEEEEecCCCccccccccHhHhccC
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPA-DRARAI-----GVD-LVSFDEAIAT---ADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~-----g~~-~~~l~ell~~---aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
||+.+|++|...|++|.+||+.... +...+. |+. ..+++++++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 6899999999999999999998732 333332 343 3488888774 899999999888888888 4577889
Q ss_pred CCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCC
Q 007512 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEE 317 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~E 317 (600)
.+|.++||++....-+...+.+.+++..+.....=|++.+
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence 9999999999888888888888888776644444455544
No 150
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.65 E-value=0.00019 Score=72.54 Aligned_cols=103 Identities=18% Similarity=0.305 Sum_probs=67.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC---CE-EEEECCC-C-ChhH-HHHcCCcc-cCHHHHhccCCEEEEecCCCcccccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG---MH-VIAHDPY-A-PADR-ARAIGVDL-VSFDEAIATADFISLHMPLTPATSKV 268 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g---~~-V~~~d~~-~-~~~~-a~~~g~~~-~~l~ell~~aDvV~l~~Pl~~~t~~l 268 (600)
+++|||||.|.+|+.+++.+...| .+ ++++++. . ..+. +...++.. .+++++++++|+|++|+|. ...+.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v 82 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEEL 82 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHH
Confidence 578999999999999999987554 33 7778764 2 2222 23356643 4788899999999999993 333333
Q ss_pred ccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 269 i~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
+.. .-..++ +.+||.++-| +..+.|.+.+..+
T Consensus 83 ~~~-l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 83 LAE-LSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHH-HHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 321 111233 5688888765 3555566655543
No 151
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.63 E-value=0.00034 Score=65.27 Aligned_cols=81 Identities=25% Similarity=0.327 Sum_probs=67.2
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|+|-+ .+|+.+|..|...|+.|..++.+. -++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 4779999999999987 578999999999999999998643 15788899999999999844 457
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.++ +|||++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 58999999998654
No 152
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.63 E-value=0.00017 Score=74.81 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=67.7
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-| .+|+.+|..|...|+.|..++.+. .++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4679999999999999 999999999999999999886542 136788999999999997 24567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 215 ~~~~v---k~GavVIDvGi~~ 232 (285)
T PRK14191 215 KASMV---KKGAVVVDIGINR 232 (285)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 76655 9999999998544
No 153
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.63 E-value=0.00013 Score=74.86 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=75.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.++|||||+|+||+++++.+..-+ -+++++|++... .++. ..+..+++.+||+|++|+| ...+..++.+
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 468999999999999999998654 359999886421 2332 2367778899999999998 4445555543
Q ss_pred hHhccCCCceEEEEccCCccccHHHHHHhHhcC-CceEEEEeccCCCCCCCCCccccCCcEEEcCCC
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSG-RVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~aL~~aL~~g-~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~ 337 (600)
....++++.+|.+++-- ..+.+.+.+... .+. . .-| .-.-++....++++|.-
T Consensus 77 -i~~~l~~~~iIS~~aGi---~~~~l~~~~~~~~~vv----r---~mP--n~p~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 77 -IKPYLGSKLLISICGGL---NLKTLEEMVGVEAKIV----R---VMP--NTPSLVGQGSLVFCANN 130 (260)
T ss_pred -HHhhccCCEEEEEeCCc---cHHHHHHHcCCCCeEE----E---ECC--CchhHhcceeEEEEeCC
Confidence 22335566666665433 344444444332 221 1 222 11235666777888753
No 154
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.61 E-value=0.0004 Score=72.29 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=72.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc------------cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL------------VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|... .+..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 379999999999999999998899999999854 333334445421 235554 8999999999944 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
+..++. .....+.+++.||...-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 444432 233346677888887766 223555666565555543
No 155
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.61 E-value=0.00033 Score=72.00 Aligned_cols=104 Identities=26% Similarity=0.335 Sum_probs=77.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC----CEEEEECCCCC-h-hHHHHcCCc-ccCHHHHhccCCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG----MHVIAHDPYAP-A-DRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g----~~V~~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~ 270 (600)
++|||||.|+||+.++..|..-| .+|++.+|... . ..+.++|+. ..+.+++..++|+|++++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999777 68999999873 2 255677776 3467789999999999996 32 12
Q ss_pred HhHhccCC---CceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 271 DETFGKMK---KGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 271 ~~~l~~mk---~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
.+.+..++ ++.+||.++-|- ..+.|.+++.+.++..+
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~ 115 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLGGLRVVRV 115 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcCCCceEEe
Confidence 44555565 688999998775 46666666664455433
No 156
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.61 E-value=0.00015 Score=79.76 Aligned_cols=92 Identities=20% Similarity=0.350 Sum_probs=67.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCccc---CHHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLV---SFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.|++++|||.|.||+.+++.|+..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3678999999999999999999999997 89999987632 24455554333 4566788999999998843 34
Q ss_pred cccHhHhccC-----CCceEEEEccC
Q 007512 268 VLNDETFGKM-----KKGVRIINVAR 288 (600)
Q Consensus 268 li~~~~l~~m-----k~gailvNvar 288 (600)
++..+.+..+ +.+.+++|.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 4666666543 24577777763
No 157
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.60 E-value=0.00024 Score=74.15 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=72.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc--------------ccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD--------------LVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.++....+|+|++|+|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~- 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY- 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc-
Confidence 47999999999999999999889999999982233333444431 124556668999999999943
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
.+...+ +.....++++.+|+.+.-| +-.++.+.+.+.+.++.+
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~~ 122 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVLG 122 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEEE
Confidence 344433 2233345678888877655 334666766676655543
No 158
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00014 Score=75.15 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=68.5
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.|+++.|+|.+ ..|+.+|..+..+|..|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4679999999999999 999999999999999999887542 14788999999999999732 567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
.++.+ |||+++||+|-..
T Consensus 210 ~~~~v---k~GavVIDVgi~~ 227 (279)
T PRK14178 210 TPDMV---KPGATVIDVGINQ 227 (279)
T ss_pred CHHHc---CCCcEEEEeeccc
Confidence 77775 9999999998543
No 159
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.59 E-value=0.00021 Score=74.14 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46799999999999999 99999999999999999988542 1478889999999998873 2456
Q ss_pred cHhHhccCCCceEEEEccCC
Q 007512 270 NDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg 289 (600)
..+ .+|+|+++||+|--
T Consensus 222 ~~~---~vk~gavVIDvGin 238 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGIT 238 (287)
T ss_pred CHH---HcCCCcEEEEeccc
Confidence 655 46999999999853
No 160
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.59 E-value=0.00056 Score=80.09 Aligned_cols=172 Identities=19% Similarity=0.205 Sum_probs=104.0
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..||..+...|++|..||++.. .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999988999999998762 2211 1111 111 245 45799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.++-+-.+.-..++++++|....++= ....|.+++.. .++ .+++-|.+- ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~--~g~Hff~P~---~~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENF--CGMHFFNPV---HRMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccE--EEEecCCcc---cccceEE---
Confidence 999999999888877766666666789998886654443 34455555543 345 566666433 2346664
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+-.||. + .+ +++.+.++++......++- ...+--+.+.+. ||+..|.+|
T Consensus 463 vv~g~~T--~-~~--------~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~~~~~ea~~l 513 (715)
T PRK11730 463 VIRGEKT--S-DE--------TIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFAGFSQL 513 (715)
T ss_pred eeCCCCC--C-HH--------HHHHHHHHHHHhCCceEEe-cCcCchhHHHHHHHHHHHHHHH
Confidence 4434432 2 22 2333444443322222222 234444555554 777766555
No 161
>PRK08577 hypothetical protein; Provisional
Probab=97.58 E-value=0.00075 Score=62.58 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=60.4
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcE--EEEEEeCCC--CcHHHHHHHhcCCCcceEEEeeC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHA--VMAIGVDEQ--PRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~a--l~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
.+.+-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. .-.+++++|+++++|.+++++++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~ 134 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQI 134 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEc
Confidence 4567788999999999999999999999999998655445544 444566654 23589999999999999998875
No 162
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.56 E-value=0.00024 Score=60.07 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC---CCCcHHHHHHHhcCCCcceEEEeeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD---EQPRKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D---~~~~~~~l~~l~~~~~v~~v~~i~l 600 (600)
+++-+...|+||++++|++++...|+||.++.++..+..+-+=|.|.++ +..=+.+.++|.++..|.++..++|
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~ 79 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDL 79 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeec
Confidence 6777888899999999999999999999999999888777777766664 2223478888999999998886654
No 163
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.55 E-value=0.0013 Score=66.25 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=97.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCC---EEEEECCC----CCh---------hHHHHcCCc-c-cCHHHHhccCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGM---HVIAHDPY----APA---------DRARAIGVD-L-VSFDEAIATAD 253 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~---~V~~~d~~----~~~---------~~a~~~g~~-~-~~l~ell~~aD 253 (600)
+..+.++++.|+|.|..|+.+|..|...|+ +|+.+|++ ... +.++..+.. . .++.+.+.++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 456889999999999999999999998897 59999987 221 123333211 1 36778889999
Q ss_pred EEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEeccCCCCCCCCCccccCCcEE
Q 007512 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALDVFTEEPPPADSKLVQHERVT 332 (600)
Q Consensus 254 vV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvi 332 (600)
+|+.++| .++++.+.++.|+++.++.+.+.-. .+.-+.++.+.|- +..-| .+.+ ..+.-|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP~--~e~~~~~A~~~ga~i~a~G-----~~~~-----~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANPV--PEIWPEEAKEAGADIVATG-----RSDF-----PNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCCC--CcCCHHHHHHcCCcEEEeC-----CCCC-----ccccceee
Confidence 9999987 4678888999999999999888322 3333333333343 33333 1211 22456788
Q ss_pred EcCCCCCCcH-----HHHHHHHHHHHHHHHHHHc
Q 007512 333 VTPHLGASTM-----EAQEGVAIEIAEAVVGALK 361 (600)
Q Consensus 333 lTPH~~~~t~-----ea~~~~~~~~~~~l~~~l~ 361 (600)
+-|-+|--.. .--++|-..+++.+.++..
T Consensus 163 ~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 163 GFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 8887653211 1113444445555555544
No 164
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.55 E-value=0.00021 Score=59.67 Aligned_cols=68 Identities=15% Similarity=0.357 Sum_probs=51.9
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcH---HHHHHHhcCCCcceEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRK---ETLKKIGDVPAIEEFV 596 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~---~~l~~l~~~~~v~~v~ 596 (600)
|-+...|+||+++.|++.+++.++||.+++.....+++.+.+.+.++-.-.+ .++++|+++|+|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 4566889999999999999999999999999875456677666665533222 7899999999999875
No 165
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00029 Score=73.37 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=66.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||.|. .|+.+|..|...|++|..+++.. .++.+.+++||+|+.+++ .+ +++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~---~~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KP---ELI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CC---CcC
Confidence 46789999999999998 99999999999999999988632 146777899999999997 33 256
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.+. +|+|++++|++-..
T Consensus 217 ~~~~---lk~gavViDvg~n~ 234 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFHP 234 (283)
T ss_pred CHHH---cCCCCEEEEEEEee
Confidence 6544 69999999998543
No 166
>PLN00203 glutamyl-tRNA reductase
Probab=97.52 E-value=0.00019 Score=80.61 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHc-CC--cc---cCHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAI-GV--DL---VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.+++|+|||.|.||+.+++.|...|. +|+++++.... ..+... +. .. .++.+.+.+||+|+.|+|..
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~-- 340 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE-- 340 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC--
Confidence 3779999999999999999999999996 79999987632 222333 22 11 25667889999999998743
Q ss_pred ccccccHhHhccCCC-------ceEEEEccCC
Q 007512 265 TSKVLNDETFGKMKK-------GVRIINVARG 289 (600)
Q Consensus 265 t~~li~~~~l~~mk~-------gailvNvarg 289 (600)
..++.++.++.+++ ..+|||.+-.
T Consensus 341 -~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 341 -TPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred -CCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 45678888877643 2478888743
No 167
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.51 E-value=0.0011 Score=77.70 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=105.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||..||..+...|++|..||++.. .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999988999999998762 2211 1111 111 234 45799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.+.-+-.+.=+.++|+++|-...++= ...++...++. .++ .|++-|.+- ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~--ig~Hff~P~---~~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENF--CGMHFFNPV---HRMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccE--EEEecCCCc---ccCceEe---
Confidence 999999999887777666566556789998876554433 44555555543 345 666666433 2356765
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.||-..+ .++++.+.++++...-..++- ...+--+.+.+. ||+..|.+|
T Consensus 463 --vv~g~~Ts---------~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~~~~~ea~~l 513 (714)
T TIGR02437 463 --VIRGEKSS---------DETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLFPYFGGFSKL 513 (714)
T ss_pred --ecCCCCCC---------HHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHHHHHHHHHHH
Confidence 34443222 223344444444333222222 234455666654 888777766
No 168
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.49 E-value=0.00034 Score=72.38 Aligned_cols=79 Identities=16% Similarity=0.291 Sum_probs=66.2
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.++. . .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG-k---p~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG-K---PNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC-c---cccc
Confidence 4679999999999999 899999999998899999886542 147788999999999997 2 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 215 ~~~~v---k~gavvIDvGi 230 (281)
T PRK14183 215 TEDMV---KEGAIVIDIGI 230 (281)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 76655 89999999984
No 169
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.47 E-value=0.00048 Score=59.64 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=60.2
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-CCcHHHHHHHhcCCCcceEEEe
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-~~~~~~l~~l~~~~~v~~v~~i 598 (600)
..++|-+...|+||++++|+++++..|+||.++.++.....+-+=|.|.+.+ ..=+.+.++|.++..|.++..+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l 81 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRN 81 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEEC
Confidence 3578888889999999999999999999999999998887777666555553 2333777888889888888765
No 170
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=97.47 E-value=0.00052 Score=57.19 Aligned_cols=72 Identities=8% Similarity=0.141 Sum_probs=59.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-CCcHHHHHHHhcCCCcceEEE
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-QPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-~~~~~~l~~l~~~~~v~~v~~ 597 (600)
.|+|-+...++||++++|++++...|.||..|.++....++.+-|.+.+++ ..-+.+.++|.++.+|.+|.+
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 367888888999999999999999999999999998777777766665553 334478888999998888865
No 171
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=97.46 E-value=0.00032 Score=74.97 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred HHHHHHHhhcCCCEEEEECCCCC------hhHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAP------ADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|..+|.+|...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++ ......++++.
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999988999999998763 123455677643 77888999999999999554366666 35667789999
Q ss_pred EEEEccCCccccH-HHHHHhHh
Q 007512 282 RIINVARGGVIDE-EALVRALD 302 (600)
Q Consensus 282 ilvNvarg~ivde-~aL~~aL~ 302 (600)
++||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999877554 55656554
No 172
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.45 E-value=0.0023 Score=67.49 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=72.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------------cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------------VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.||+.+|.+|...|.+|..+.+.. .+.....|+.. .+..+....+|+|++|+|...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 589999999999999999999999999887754 33333434321 112234678999999999543
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
+...+ +.....++++..++...-| +-.++.+.+.+...++.++
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 44333 2223346778888877665 3356777777766666554
No 173
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.44 E-value=0.0024 Score=71.12 Aligned_cols=134 Identities=16% Similarity=0.159 Sum_probs=80.4
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChhHHHHcC--------------------Ccc-cCHHHHhccCCE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPADRARAIG--------------------VDL-VSFDEAIATADF 254 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~~a~~~g--------------------~~~-~~l~ell~~aDv 254 (600)
++|+|||+|.+|..+|..|... |++|++||.+...-.....| ... .++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 69999999765322221111 111 245677899999
Q ss_pred EEEecCCCcccc------------ccc--cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEe-ccCCCCC
Q 007512 255 ISLHMPLTPATS------------KVL--NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD-VFTEEPP 319 (600)
Q Consensus 255 V~l~~Pl~~~t~------------~li--~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lD-v~~~EP~ 319 (600)
+++|+| ||... ++. -+..-..+++|.++|.-+...+=..+.+...+.+.. .|.-.+ +|-+|=+
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl 159 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFL 159 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCcc
Confidence 999998 33211 111 122344579999999888744434455555555421 010011 1445543
Q ss_pred CC---CCccccCCcEEE
Q 007512 320 PA---DSKLVQHERVTV 333 (600)
Q Consensus 320 ~~---~~~L~~~~nvil 333 (600)
.. -+.++..|++|+
T Consensus 160 ~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 160 AEGTAIEDLFKPDRVLI 176 (473)
T ss_pred CCCCcccccCCCCEEEE
Confidence 32 245666777753
No 174
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.43 E-value=0.0014 Score=76.52 Aligned_cols=172 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 250 (600)
++|+|||.|.||..+|..+. ..|++|..||++.. .+.+ .+.| +.. .++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 57999999998752 1111 1111 112 244 4679
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
+||+|+=++|-..+.++-+-.+.-..++++++|....++= ....+..+++. .++ .+++-|. |+ ..-||.|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--~g~Hffn--P~-~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENV--IGLHYFS--PV-EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccE--EEEecCC--cc-ccCceEE--
Confidence 9999999999888777666566556689998876554443 34445555543 455 5666664 32 2346664
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
|+-+|+. + .+ +++.+.++++...-..++- ...+--+.+.+. ||+..|.+|
T Consensus 455 -vv~g~~T--~-~~--------~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~Ea~~l 505 (699)
T TIGR02440 455 -VIPHAGT--S-EQ--------TIATTVALAKKQGKTPIVV-ADKAGFYVNRILAPYMNEAARL 505 (699)
T ss_pred -EeCCCCC--C-HH--------HHHHHHHHHHHcCCeEEEE-ccccchHHHHHHHHHHHHHHHH
Confidence 4444442 2 22 3344444444333222222 233444555543 777777666
No 175
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.42 E-value=0.00049 Score=57.32 Aligned_cols=71 Identities=7% Similarity=0.090 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe--CCCCcHHHHHHHhcCCCcceEEE
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV--DEQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~--D~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
|++-+...|+||++.+|++++...|+||.+|.++..+..+..-|.|.+ |+..-+.+.++|.++.+|.++.-
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~~ 75 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVNK 75 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEEe
Confidence 678888899999999999999999999999999977666665554443 33344478888888888887753
No 176
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.00039 Score=55.96 Aligned_cols=57 Identities=14% Similarity=0.324 Sum_probs=46.0
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~ 588 (600)
-+.+..+|+||.+++|+++|+++|+||.+|......+ .+++++.+|+ ++.+.+.|++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHH
Confidence 3567889999999999999999999999999876433 5888888865 3566666665
No 177
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.38 E-value=0.0012 Score=64.59 Aligned_cols=98 Identities=22% Similarity=0.122 Sum_probs=66.6
Q ss_pred ceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCCCh-hH-HHHc----CCc-----cc---CHHHHhccCCEEE
Q 007512 192 GVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPA-DR-ARAI----GVD-----LV---SFDEAIATADFIS 256 (600)
Q Consensus 192 g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-a~~~----g~~-----~~---~l~ell~~aDvV~ 256 (600)
|..+.++++.|+|. |.+|+.+++.+...|.+|..++++... +. .... +.. .. ++.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 55678999999995 999999999999889999999876521 11 1111 221 11 2347788999999
Q ss_pred EecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 257 l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
.++|....+ .+.. -...+++.+++|+.+...++
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~~ 135 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPVG 135 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCCC
Confidence 999865431 1111 11245688999988776553
No 178
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00052 Score=55.70 Aligned_cols=62 Identities=16% Similarity=0.290 Sum_probs=53.1
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDV 589 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~ 589 (600)
.+-+..+|+||.++.+...|+++++||.++...+..+++.+.+.+.++...++++.+.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999988876667788899999876666888888764
No 179
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.35 E-value=0.0021 Score=75.19 Aligned_cols=172 Identities=19% Similarity=0.176 Sum_probs=104.4
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ccc-cCHHHHhc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVIAHDPYAP-ADRA-----------RAIG-------------VDL-VSFDEAIA 250 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~ 250 (600)
++|+|||.|.||..+|..+. ..|++|..||++.. .+.+ .+.| +.. .++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 77999999998752 1111 1111 111 234 4679
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCC
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHE 329 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~ 329 (600)
+||+|+=++|-..+.+.-+-++.=+.++|+++|....++= ....|.+.+.. .++ .+++-|. |+ ..-||.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--ig~Hff~--P~-~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQV--IGLHYFS--PV-EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccce--EEEecCC--cc-ccCceEE--
Confidence 9999999999888777666566556689999987665543 34455555433 445 6666664 32 2346664
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhccc-chHHHHHHH
Q 007512 330 RVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK-PFVELAEKL 392 (600)
Q Consensus 330 nvilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~~-p~~~la~~l 392 (600)
+.||-..+ . ++++.+.++++......++- ...+--+.+.+. ||+..|.+|
T Consensus 460 ---vv~g~~Ts-~--------~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~~~~~EA~~l 510 (708)
T PRK11154 460 ---VIPHAKTS-A--------ETIATTVALAKKQGKTPIVV-RDGAGFYVNRILAPYINEAARL 510 (708)
T ss_pred ---EECCCCCC-H--------HHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHHHHHHHHHHH
Confidence 44543222 2 23344444443332222222 223344555544 777777666
No 180
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.35 E-value=0.0016 Score=76.38 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=104.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHH-----------HHcC-------------Ccc-cCHHHHhcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRA-----------RAIG-------------VDL-VSFDEAIAT 251 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a-----------~~~g-------------~~~-~~l~ell~~ 251 (600)
++|+|||.|.||+.||..+...|++|+.||+.... +.+ .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999889999999987521 211 1111 111 2453 5799
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccCCCCCCCCCccccCCc
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
||+|+=++|-..+.+.-+-.+.=..++++++|....++ ++...+...+.. .++ .|++-|.+- ..-||.|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--ig~Hff~P~---~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRPEKV--IGMHYFSPV---DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCccce--EEEeccCCc---ccCceEE---
Confidence 99999999988877776666666678999887643332 345555555543 345 677766432 2346664
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
|+-+|+. +.++ ++.+.++.+...-..++- ...+--+.+.+ .||+..|.+|
T Consensus 485 vv~g~~T---s~~~--------~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~~~~~~ea~~l 535 (737)
T TIGR02441 485 IITHDGT---SKDT--------LASAVAVGLKQGKVVIVV-KDGPGFYTTRCLGPMLAEVIRL 535 (737)
T ss_pred EeCCCCC---CHHH--------HHHHHHHHHHCCCeEEEE-CCcCCchHHHHHHHHHHHHHHH
Confidence 4445543 2222 233333333222222221 23334455554 4888887776
No 181
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0005 Score=54.43 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=48.8
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDV 589 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~ 589 (600)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 346789999999999999999999999998876554567888899887 66788877763
No 182
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.00085 Score=69.62 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=68.1
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i 215 (284)
T PRK14190 152 YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLI 215 (284)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcC
Confidence 4679999999999987 579999999998899999886532 2578899999999999972 3478
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
+.+++ |+|+++||+|.-.+
T Consensus 216 ~~~~i---k~gavVIDvGi~~~ 234 (284)
T PRK14190 216 TADMV---KEGAVVIDVGVNRL 234 (284)
T ss_pred CHHHc---CCCCEEEEeecccc
Confidence 87766 89999999986553
No 183
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.34 E-value=0.0007 Score=70.16 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=67.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47799999999999885 69999999998899999887543 2478889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+.+ |+|+++||+|--.
T Consensus 215 ~~~~v---k~GavVIDvGin~ 232 (284)
T PRK14170 215 KKDYI---KPGAIVIDVGMDR 232 (284)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76655 8999999998544
No 184
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.33 E-value=0.00082 Score=71.41 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred CCEEEEEecChhHHHHHHHhhc-C-CCEEEEECCCCCh-hH----HHHcCCc---ccCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-L-GMHVIAHDPYAPA-DR----ARAIGVD---LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~-g~~V~~~d~~~~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999998877763 3 4689999998732 21 1234532 347999999999999999853 3
Q ss_pred ccccHhHhccCCCceEEEEccCCc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ 290 (600)
-++..+ .+|||+.+..+|...
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGADA 225 (325)
T ss_pred cEecHH---HcCCCCEEEecCCCC
Confidence 455544 359999999998543
No 185
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.33 E-value=0.00075 Score=70.08 Aligned_cols=96 Identities=20% Similarity=0.275 Sum_probs=63.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCCh-h-HHHHcC----Ccc-cCHHHHhccCCEEEEecCCCcc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPA-D-RARAIG----VDL-VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~-~-~a~~~g----~~~-~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+.++++.|+|.|.+|+.++..|...| .+|.+++++... + .+...+ +.. .++.+.+.++|+|+.++|..-.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 4678999999999999999999999999 699999987532 1 222222 111 2345677899999999996532
Q ss_pred ccccccHhHhccCCCceEEEEccC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvar 288 (600)
...-...-.+..++++.+++|+.-
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY 222 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIY 222 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeec
Confidence 110011112234566667777654
No 186
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.32 E-value=0.00072 Score=70.54 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=67.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999999999999886542 1578889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..+++ |+|+++||+|--.+
T Consensus 216 ~~~~i---k~gavVIDvGin~~ 234 (297)
T PRK14186 216 GAEMV---KPGAVVVDVGIHRL 234 (297)
T ss_pred CHHHc---CCCCEEEEeccccc
Confidence 76655 89999999985543
No 187
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.31 E-value=0.0007 Score=59.99 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=57.2
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCChhHHHH----cCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceE
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPADRARA----IGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVR 282 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~----~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gai 282 (600)
-+..+++.|++.|++|.+|||+.+...... .+++.. ++++.++.+|+|+++++ .++-+.+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 356789999999999999999996665555 456654 79999999999999998 444444333445566889999
Q ss_pred EEEc
Q 007512 283 IINV 286 (600)
Q Consensus 283 lvNv 286 (600)
|+|+
T Consensus 97 iiD~ 100 (106)
T PF03720_consen 97 IIDG 100 (106)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9997
No 188
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00078 Score=69.79 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=66.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999998899999886543 1478889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
+.++ +|+|+++||+|--.
T Consensus 214 ~~~~---vk~GavVIDvGin~ 231 (282)
T PRK14169 214 GADA---VKPGAVVIDVGISR 231 (282)
T ss_pred CHHH---cCCCcEEEEeeccc
Confidence 7665 48999999998533
No 189
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.30 E-value=0.0019 Score=68.77 Aligned_cols=98 Identities=24% Similarity=0.376 Sum_probs=71.2
Q ss_pred cceeccCCEEEEEec-ChhHHHHHHHhh-cCC-CEEEEECCCCC-hh-HHHHcC-CcccCHHHHhccCCEEEEecCCCcc
Q 007512 191 VGVSLVGKTLAVLGF-GKVGSEVARRAK-GLG-MHVIAHDPYAP-AD-RARAIG-VDLVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 191 ~g~~l~gktiGIIGl-G~IG~~vA~~l~-~~g-~~V~~~d~~~~-~~-~a~~~g-~~~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+..+.||++.|+|. |.||+.+++.|. ..| .+++.+++... .. .+.+.+ ....++++.++++|+|+.++-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456789999999998 899999999997 456 48888887642 11 222332 23457889999999998776532
Q ss_pred ccc-cccHhHhccCCCceEEEEccCCccccH
Q 007512 265 TSK-VLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 265 t~~-li~~~~l~~mk~gailvNvarg~ivde 294 (600)
.. .++.+. ++++++++|.|+-.=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 23 366654 489999999998765553
No 190
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.30 E-value=0.00081 Score=70.17 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=67.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999885 69999999998899999987542 1478899999999999973 3677
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|--.
T Consensus 225 ~~~~v---k~gavVIDvGin~ 242 (299)
T PLN02516 225 KGDWI---KPGAAVIDVGTNA 242 (299)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 77655 8999999998543
No 191
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00085 Score=69.53 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=66.1
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCcc
Confidence 4679999999999987 469999999999999999988543 1478889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 217 ~~~~i---k~gavVIDvGi 232 (284)
T PRK14177 217 KADWI---SEGAVLLDAGY 232 (284)
T ss_pred CHHHc---CCCCEEEEecC
Confidence 76654 89999999984
No 192
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.29 E-value=0.00079 Score=69.75 Aligned_cols=79 Identities=22% Similarity=0.287 Sum_probs=66.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. .++.+..++||+|+.++.. .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46789999999999875 69999999998899999887653 2478899999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
+.+++ |+|+++||+|-
T Consensus 215 ~~~~v---k~GavVIDvGi 230 (282)
T PRK14166 215 RSDMV---KEGVIVVDVGI 230 (282)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 77654 89999999984
No 193
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.28 E-value=0.0011 Score=54.38 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=54.5
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC-c---HHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP-R---KETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~-~---~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|+||.++.|.+.|+++++||..++..+ ..++.+-+.+.++..- . .+++++|+++|+|.+|+.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3667789999999999999999999999998753 2344555555554222 2 4789999999999999875
No 194
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.26 E-value=0.00099 Score=68.89 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=66.0
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 4679999999999987 479999999998899999987542 1578889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..++ .|+|+++||+|-
T Consensus 216 ~~~~---ik~gavVIDvGi 231 (278)
T PRK14172 216 DEEY---VKEGAIVIDVGT 231 (278)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7665 489999999974
No 195
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.24 E-value=0.001 Score=69.32 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=67.1
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999875 69999999999999999987643 2478889999999999983 3467
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 218 ~~~~i---k~gaiVIDVGin~ 235 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGINS 235 (294)
T ss_pred CHHHc---CCCCEEEEecccc
Confidence 76655 8999999998433
No 196
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.24 E-value=0.0011 Score=68.89 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=67.6
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+ .+|+.+|..|...|..|..+..+. -++.+..++||+|+.++.. .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 4679999999999987 579999999998899999887543 1478889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
+.+++ |+|+++||+|--.+
T Consensus 213 ~~~~v---k~GavVIDVGin~~ 231 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINRV 231 (287)
T ss_pred CHHHc---CCCCEEEEccCccc
Confidence 76655 89999999986543
No 197
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.23 E-value=0.0009 Score=70.86 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=66.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46799999999999875 69999999998899999887543 1478889999999999983 3567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|--.
T Consensus 272 ~~d~v---k~GavVIDVGin~ 289 (345)
T PLN02897 272 RGSWL---KPGAVVIDVGTTP 289 (345)
T ss_pred CHHHc---CCCCEEEEccccc
Confidence 76655 8999999998533
No 198
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.23 E-value=0.00054 Score=55.79 Aligned_cols=70 Identities=16% Similarity=0.238 Sum_probs=52.8
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC---CcHHHHHHHhcCCCcceEEE
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ---PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~---~~~~~l~~l~~~~~v~~v~~ 597 (600)
.+-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++.. .-++++++|+++++|.++..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~~ 74 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPS 74 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCce
Confidence 35566789999999999999999999999987543333667776655433 23368899999999877543
No 199
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.23 E-value=0.0011 Score=68.84 Aligned_cols=79 Identities=18% Similarity=0.300 Sum_probs=65.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 46789999999999874 79999999998899999987543 1577889999999999983 3457
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 216 ~~~~v---k~gavVIDvGi 231 (282)
T PRK14180 216 TADMV---KEGAVVIDVGI 231 (282)
T ss_pred CHHHc---CCCcEEEEecc
Confidence 76554 89999999984
No 200
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.20 E-value=0.0012 Score=68.26 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=66.8
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...+..|..+..+. -++.+..++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999875 69999999998899999987643 1477889999999999983 4567
Q ss_pred cHhHhccCCCceEEEEccCCc
Q 007512 270 NDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ 290 (600)
..+++ |+|+++||+|-..
T Consensus 215 ~~~~i---k~gaiVIDvGin~ 232 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGMNR 232 (282)
T ss_pred CHHHc---CCCCEEEEeecee
Confidence 77655 8999999998443
No 201
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.18 E-value=0.0012 Score=68.46 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=65.9
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+..+. .+|.+..++||+|+.++. . .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvG-k---p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIG-S---PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC-C---CCcc
Confidence 46789999999999875 69999999998899999887542 247889999999999998 2 3577
Q ss_pred cHhHhccCCCceEEEEccC
Q 007512 270 NDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvar 288 (600)
..+++ |+|+++||+|-
T Consensus 217 ~~~~v---k~GavVIDvGi 232 (288)
T PRK14171 217 TAEYF---NPESIVIDVGI 232 (288)
T ss_pred CHHHc---CCCCEEEEeec
Confidence 76655 89999999983
No 202
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.17 E-value=0.0014 Score=68.05 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=66.0
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... +..|..+..+. -++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46799999999999875 699999999876 78999886542 1588889999999999983
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..+++ |+|+++||+|--.
T Consensus 211 p~~i~~~~i---k~GavVIDvGin~ 232 (287)
T PRK14181 211 PLFIKEEMI---AEKAVIVDVGTSR 232 (287)
T ss_pred cCccCHHHc---CCCCEEEEecccc
Confidence 356777655 8999999998544
No 203
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.16 E-value=0.0011 Score=62.88 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=57.6
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|+|-+...|+||++++|+++++++|+||.++.++.....+...|.+.++. ..-+.+.++|.++..|.+|..+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~ 75 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDL 75 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEec
Confidence 57788899999999999999999999999999998765666777777765 2333667778888888777654
No 204
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.00079 Score=69.71 Aligned_cols=94 Identities=29% Similarity=0.368 Sum_probs=72.5
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH--HcCCc-------ccCHHHHhccCCEEEEecCC-Cc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR--AIGVD-------LVSFDEAIATADFISLHMPL-TP 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~--~~g~~-------~~~l~ell~~aDvV~l~~Pl-~~ 263 (600)
.+..-++.|||.|-+|..-|+.+.++|.+|...|.+.+.-+.. ..+.+ ...+++.+.++|+|+-++=. ..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3566789999999999999999999999999998775322111 11222 12488999999999976542 33
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
..-.++.++.+++||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 456788899999999999999986
No 205
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.14 E-value=0.0013 Score=69.95 Aligned_cols=80 Identities=21% Similarity=0.211 Sum_probs=66.4
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.++.||++.|||-+. +|+.+|..|...++.|..+.... -++.+.+++||+|+.++.. .+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcC
Confidence 36789999999999875 69999999999999999887542 2578889999999999982 3567
Q ss_pred cHhHhccCCCceEEEEccCC
Q 007512 270 NDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg 289 (600)
..+++ |+|+++||+|--
T Consensus 289 ~~d~v---K~GAvVIDVGIn 305 (364)
T PLN02616 289 RGSWI---KPGAVVIDVGIN 305 (364)
T ss_pred CHHHc---CCCCEEEecccc
Confidence 77655 899999999843
No 206
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.0016 Score=68.87 Aligned_cols=87 Identities=22% Similarity=0.258 Sum_probs=60.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-h-HHHHc---C--Ccc-cCHHHHhccCCEEEEecCCCccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-D-RARAI---G--VDL-VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~-~a~~~---g--~~~-~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+++... + .+.+. | +.. .++++.+.+||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 36799999999999999986653 44 689999987632 2 22221 4 222 47888999999998888844
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
..++..+ .++||+.+.-++.
T Consensus 201 ~pvl~~~---~l~~g~~i~~ig~ 220 (314)
T PRK06141 201 EPLVRGE---WLKPGTHLDLVGN 220 (314)
T ss_pred CCEecHH---HcCCCCEEEeeCC
Confidence 4455543 4689984444443
No 207
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.13 E-value=0.0012 Score=62.97 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~~i 598 (600)
|++-+...|+||++++|+++++++|+||.++.++.....+...+.+.++. ..=+.+.++|.++..|.+|..+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~ 76 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDL 76 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEec
Confidence 67888899999999999999999999999999987765566666666654 3344778888888888887654
No 208
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.0018 Score=67.25 Aligned_cols=111 Identities=19% Similarity=0.292 Sum_probs=81.4
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhc--CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKG--LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~--~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.+.++.||++.|||-+ .+|+.+|..|.. .++.|..+.... -++.+.+++||+|+.+++.. +
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----H 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----C
Confidence 4679999999999987 579999999987 689999887542 25888999999999999832 4
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTM 342 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ 342 (600)
++..+++ |+|+++||+|--.+ .+|++.| ||- .+ ..+... .+||-.||.-.
T Consensus 216 ~i~~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~-~iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAG-AVSPNPGGVGP 265 (284)
T ss_pred ccCHHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCC-EEeCCCCChhH
Confidence 6776655 89999999985443 2445433 443 11 122233 38999888754
No 209
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=97.07 E-value=0.0016 Score=52.25 Aligned_cols=61 Identities=16% Similarity=0.335 Sum_probs=49.4
Q ss_pred CCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceE
Q 007512 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 535 D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v 595 (600)
|+||++.+|+.++...|+||.+|.++..+..+..-+.|.++. ..-+.+.++|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 689999999999999999999999999777777766666665 3344788999999888765
No 210
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.05 E-value=0.0017 Score=68.34 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=65.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh--hHHHHc---CCc--ccCHHHHhccCCEEEEecCCCcccc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA--DRARAI---GVD--LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~--~~a~~~---g~~--~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
..++++|||.|.+|+..++.+.. ++ -+|.+||+.... ..+.+. ++. ..++++++.+||+|+.|+|.. .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46799999999999999999863 56 479999987622 222222 333 237889999999999999955 3
Q ss_pred ccccHhHhccCCCceEEEEccCC
Q 007512 267 KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg 289 (600)
.++.. .+|||+.|+.+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 55543 36999999999853
No 211
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.03 E-value=0.014 Score=61.34 Aligned_cols=174 Identities=22% Similarity=0.171 Sum_probs=101.8
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH-----------HHHcCC-------------c-ccCHHHHhc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR-----------ARAIGV-------------D-LVSFDEAIA 250 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~-----------a~~~g~-------------~-~~~l~ell~ 250 (600)
-+++||||.|.||+.+|..+..-|+.|..+|++... +. ..+.|. . ..++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 479999999999999999998877999999988421 11 111121 0 01222 689
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHER 330 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~n 330 (600)
+||+|+=++|-+-+.++-+-++.=..+||+++|=.-.++= ...++.++++. +=...|++-|.+-|+ -||.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl--~it~ia~~~~r-per~iG~HFfNP~~~---m~LVE--- 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL--SITELAEALKR-PERFIGLHFFNPVPL---MPLVE--- 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC--CHHHHHHHhCC-chhEEEEeccCCCCc---ceeEE---
Confidence 9999999999887777655555555688998875433332 34445555533 222367777765433 34543
Q ss_pred EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhcc-cchHHHHHHH
Q 007512 331 VTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTEL-KPFVELAEKL 392 (600)
Q Consensus 331 vilTPH~~~~t~ea~~~~~~~~~~~l~~~l~g~~~~~~vn~~~i~~~~~~~~-~p~~~la~~l 392 (600)
+|-+.+. . .++++.+.+|.+...-.. +..-..+--.++.+ .||+..|.++
T Consensus 153 vI~g~~T----~-------~e~~~~~~~~~~~igK~~-vv~~D~pGFi~NRil~~~~~eA~~l 203 (307)
T COG1250 153 VIRGEKT----S-------DETVERVVEFAKKIGKTP-VVVKDVPGFIVNRLLAALLNEAIRL 203 (307)
T ss_pred EecCCCC----C-------HHHHHHHHHHHHHcCCCC-EeecCCCceehHhHHHHHHHHHHHH
Confidence 4444432 1 334455555554422111 22112223344443 4777777666
No 212
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.03 E-value=0.0022 Score=64.78 Aligned_cols=34 Identities=41% Similarity=0.664 Sum_probs=31.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~ 226 (600)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v 60 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999999999953
No 213
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0024 Score=66.55 Aligned_cols=81 Identities=20% Similarity=0.263 Sum_probs=65.0
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+..+. -++.+..++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999875 699999999865 78999886543 1578889999999999983
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..++ .|+|+++||+|--.
T Consensus 215 p~~i~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred cCccCHHH---cCCCCEEEEecCcc
Confidence 34677655 48999999998533
No 214
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.01 E-value=0.0017 Score=66.82 Aligned_cols=82 Identities=20% Similarity=0.311 Sum_probs=67.0
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+.+|+||++.|||-+.| |+.+|..|...++.|..+..+. -++.+..++||+|+.++-. .+++
T Consensus 150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG~----p~~i 213 (283)
T COG0190 150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVGK----PHFI 213 (283)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecCC----cccc
Confidence 467999999999999975 8999999999999999987653 1477889999999999862 3566
Q ss_pred cHhHhccCCCceEEEEccCCcc
Q 007512 270 NDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~i 291 (600)
..++ .|+|+++||+|--.+
T Consensus 214 ~~d~---vk~gavVIDVGinrv 232 (283)
T COG0190 214 KADM---VKPGAVVIDVGINRV 232 (283)
T ss_pred cccc---ccCCCEEEecCCccc
Confidence 6544 589999999985443
No 215
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.01 E-value=0.00071 Score=59.61 Aligned_cols=86 Identities=24% Similarity=0.297 Sum_probs=60.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--cCHHHHhccCCEEEEecCCCccccccccH
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--VSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+.|+++.|||.|.+|..=++.|...|.+|.+++|.. ...+..+++ ..+++.+..+|+|+.+++... +++
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~ 75 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE 75 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence 6889999999999999999999999999999999875 112223322 245677899999998887322 455
Q ss_pred hHhccCCCceEEEEcc
Q 007512 272 ETFGKMKKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~mk~gailvNva 287 (600)
.....++.--+++|++
T Consensus 76 ~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 76 AIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHTTSEEEET
T ss_pred HHHHHHhhCCEEEEEC
Confidence 5555566556788875
No 216
>PRK00194 hypothetical protein; Validated
Probab=96.99 E-value=0.0006 Score=58.28 Aligned_cols=65 Identities=23% Similarity=0.182 Sum_probs=47.9
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC---CcH-HHHHHHhcCCCc
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ---PRK-ETLKKIGDVPAI 592 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~---~~~-~~l~~l~~~~~v 592 (600)
.+.+.+..+|+||+++.|++.|+++|+||..++... .++...+.+.++-+ .+. ++.++|.++...
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999875 45666675554433 333 454666665544
No 217
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.97 E-value=0.0031 Score=66.40 Aligned_cols=113 Identities=21% Similarity=0.259 Sum_probs=69.4
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------G----VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.+|..+|..+...|. +|+.+|.......+... . +.. .++++ +++||+|+++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC-
Confidence 589999999999999999887665 89999986543332211 1 111 35666 7999999999983
Q ss_pred cccccc-------ccH-------hHhccCCCceEEEEccCCccccHHHHHHh--HhcCCceEEE--Ee
Q 007512 263 PATSKV-------LND-------ETFGKMKKGVRIINVARGGVIDEEALVRA--LDSGRVAQAA--LD 312 (600)
Q Consensus 263 ~~t~~l-------i~~-------~~l~~mk~gailvNvarg~ivde~aL~~a--L~~g~i~ga~--lD 312 (600)
+...+. .|. +.+....+++++|+++-.-=+....+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 322221 111 12333457889999864222223333333 4444566654 56
No 218
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.96 E-value=0.0033 Score=64.93 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=68.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHc---C-CcccCHHHH-hccCCEEEEecCCC--ccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAI---G-VDLVSFDEA-IATADFISLHMPLT--PAT 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aDvV~l~~Pl~--~~t 265 (600)
..+++++|+|.|.+|+.++..+...|.+|.++|+.... +.+... + ....++++. +.++|+|+.|+|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999889999999887522 112221 2 122344443 35899999999974 211
Q ss_pred cc-cccHhHhccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 266 SK-VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ~~-li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.. .++ ...++++.+++|+.-.+.. . .+.++.++
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~-T-~ll~~A~~ 228 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGE-T-PFLAEAKS 228 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCC-C-HHHHHHHH
Confidence 11 122 3447888899998765542 2 34444443
No 219
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=96.93 E-value=0.0023 Score=67.62 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHhHh
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETF 274 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l 274 (600)
.+|||||+|.||+.+++.+... ++++.+ ||++.........++. ..+.++++.+.|+|++|+|.... -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999866 899887 6877422222223332 24677888999999999995432 12233
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
..|+.|.=+|++.
T Consensus 79 ~~L~aG~NVV~s~ 91 (324)
T TIGR01921 79 PYFAQFANTVDSF 91 (324)
T ss_pred HHHHcCCCEEECC
Confidence 3466676777774
No 220
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.93 E-value=0.078 Score=58.56 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=45.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC---cHHHHHHHhcCCCcce
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP---RKETLKKIGDVPAIEE 594 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~---~~~~l~~l~~~~~v~~ 594 (600)
+.|-+...|+||++++|+.+|++++|||..+..... .++.+-+++-++... =.+++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 556666789999999999999999999998876543 233343333333222 2256677777777654
No 221
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.92 E-value=0.0017 Score=64.35 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=60.7
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHcC-Cccc--C-HHHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAIG-VDLV--S-FDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~g-~~~~--~-l~ell~~aDvV~l~~Pl~~~t 265 (600)
...+.||++.|||.|.+|...++.|...|.+|.+++|....+. ....+ +.+. . .++.+..+|+|+.++...+
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-- 82 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-- 82 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH--
Confidence 3579999999999999999999999999999999998764331 11222 2221 1 2345788999988877443
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
+|......++.+ +++|++
T Consensus 83 ---lN~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 83 ---VNEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ---HHHHHHHHHHhC-CcEEEC
Confidence 233333333444 467764
No 222
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0029 Score=65.75 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=65.6
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKG----LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~----~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..++.+. .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46789999999999885 69999999987 789998877542 148899999999999996 3
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
.+++..+++ |+|+++||+|-
T Consensus 215 p~li~~~~v---k~GavVIDVGi 234 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVGI 234 (286)
T ss_pred CCcCCHHHc---CCCCEEEEeee
Confidence 456777666 99999999983
No 223
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.88 E-value=0.0022 Score=57.22 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=49.6
Q ss_pred EEEEEecChhHHHHHHHhhcC--CCEEE-EECCCCC-h-hHHHHcCCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL--GMHVI-AHDPYAP-A-DRARAIGVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~--g~~V~-~~d~~~~-~-~~a~~~g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
++||||+|.+|+...+.+... ++++. ++|++.. . ..+...|+. +.+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 799999999999999888755 67776 4788762 2 234566776 458999998 79999999994
No 224
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.88 E-value=0.0034 Score=65.59 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=65.3
Q ss_pred cceeccCCEEEEEecC-hhHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFG-KVGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG-~IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+ .+|+.+|..|... +..|..+.... -++.+.+++||+|+.++..
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk---- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV---- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----
Confidence 4779999999999987 5799999999865 78998876442 1478889999999999972
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..+++ |+|+++||+|--.
T Consensus 219 p~~i~~~~i---k~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEWI---KPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHHc---CCCCEEEecCCCc
Confidence 346776655 8999999998544
No 225
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.88 E-value=0.0033 Score=51.29 Aligned_cols=66 Identities=18% Similarity=0.382 Sum_probs=50.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCC-cHHHHHHHhcCCCcceE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQP-RKETLKKIGDVPAIEEF 595 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~-~~~~l~~l~~~~~v~~v 595 (600)
|-+...|+||.++.|++.+++.|+||..++..+.. .+.+.+.+.+. +.. -..++++|+++|+|.-.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 55778899999999999999999999999986643 45555544443 322 24789999999987643
No 226
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.85 E-value=0.002 Score=68.93 Aligned_cols=90 Identities=26% Similarity=0.317 Sum_probs=61.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc---------CC------cc-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI---------GV------DL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~---------g~------~~-~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|..+|..|...| .|..|.++.. .+...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 5667765431 1111111 11 11 267788999999999999
Q ss_pred CCccccccccHhHhccCCCceEEEEccCCc
Q 007512 261 LTPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 261 l~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
...++..+. +.-..++++..++++..|=
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeCC
Confidence 334454443 2333467888899988753
No 227
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.85 E-value=0.0045 Score=65.79 Aligned_cols=87 Identities=26% Similarity=0.218 Sum_probs=63.6
Q ss_pred cCCEEEEEecChhHHHHHHHhh-cCCC-EEEEECCCCCh-h-HHH----HcCCc---ccCHHHHhccCCEEEEecCCCcc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAK-GLGM-HVIAHDPYAPA-D-RAR----AIGVD---LVSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~-~~g~-~V~~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..++++|||.|.+|+..++.+. ..+. +|..||++... + .+. +.+++ +.++++++++||+|++|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 3679999999999999988765 4464 78889987632 2 222 22443 347899999999999999954
Q ss_pred ccccccHhHhccCCCceEEEEccCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg 289 (600)
.-++. +.+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 23443 456999999999863
No 228
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.84 E-value=0.0037 Score=51.48 Aligned_cols=69 Identities=12% Similarity=0.137 Sum_probs=52.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC-cHHHHHHHhcCCCcceEEEeeC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP-RKETLKKIGDVPAIEEFVFLKL 600 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~-~~~~l~~l~~~~~v~~v~~i~l 600 (600)
|-+...|++|+++.|++.+++.++||.+++.... +.-.+.+++.+.- =..++++|+++|+|.+|+.+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5567789999999999999999999999999532 2222333333222 2478999999999999987763
No 229
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.84 E-value=0.0037 Score=68.60 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=62.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC--hhHHHHcC-Ccc---cCHHHHhccCCEEEEecCCCcccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP--ADRARAIG-VDL---VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~--~~~a~~~g-~~~---~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.+.|+++.|||.|.+|+.+++.|...|. +++.+++... ...+...+ ... .++.+.+.+||+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4778999999999999999999998885 7899998752 22333444 332 24567789999999999843 3
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
.++..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 445554432 1234566655
No 230
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.84 E-value=0.0035 Score=65.52 Aligned_cols=81 Identities=17% Similarity=0.209 Sum_probs=65.3
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhc----CCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKG----LGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~----~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|.. .+..|..+.... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999875 69999999876 578888776442 14788899999999999732
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
+++..+++ |+|+++||+|-..
T Consensus 218 -~li~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGINR 238 (295)
T ss_pred -CccCHHHc---CCCCEEEEeeccc
Confidence 67888777 9999999998443
No 231
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.84 E-value=0.023 Score=60.90 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=107.7
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hHHHHcC----C-cccCHHHH---hccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DRARAIG----V-DLVSFDEA---IATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~a~~~g----~-~~~~l~el---l~~aDvV~l~~Pl~~~t~~ 267 (600)
..||+||||-||+.+|......|++|.+|++..+. +..++.+ + ...+++|+ ++.=--|++.+--......
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999988732 2222222 1 23467665 4556667776653321123
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
.| +..+..|.+|=++||-|-..--|...-.++|.+..|...|.-|.+.|-- -+. -|-+ +=|-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~-GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARH-GPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----ccc-CCCc-----CCCCCHHHHHH
Confidence 33 4567779999999999987777888888889988887888888988832 222 2433 33677888887
Q ss_pred HHHHHHHHHHHHHcCCC
Q 007512 348 VAIEIAEAVVGALKGEL 364 (600)
Q Consensus 348 ~~~~~~~~l~~~l~g~~ 364 (600)
+ .-+.+.|.+-..|.+
T Consensus 153 v-~pil~~IaAk~~g~p 168 (473)
T COG0362 153 V-APILTKIAAKVDGEP 168 (473)
T ss_pred H-HHHHHHHHhhcCCCC
Confidence 7 345566666555544
No 232
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.82 E-value=0.0021 Score=57.99 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=54.5
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCCC-ChhHHH-HcC-Cc-----ccCHHHH-hccCCEEEEecCCCcccc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPYA-PADRAR-AIG-VD-----LVSFDEA-IATADFISLHMPLTPATS 266 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~~-~~~~a~-~~g-~~-----~~~l~el-l~~aDvV~l~~Pl~~~t~ 266 (600)
++||+| .|.+|+.+++.+... ++++.+. +... ....+. ..+ +. ..+.+++ ..++|+|++|+|... +.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence 589999 599999999999875 7887776 4222 111111 111 11 1111122 258999999999553 33
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
..+. .....+++|+++||++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 22445789999999973
No 233
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.81 E-value=0.0026 Score=63.24 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=63.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHc-CCccc--C-HHHHhccCCEEEEecCCCcccc
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAI-GVDLV--S-FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
.++.|+++.|||.|.+|..-++.|..+|.+|.+++|....+. ..+. .+.+. + -.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 478999999999999999999999999999999999875332 1222 33321 1 1355788999888765332
Q ss_pred ccccHhHhccCCCceEEEEcc
Q 007512 267 KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNva 287 (600)
+|......+++-.++||+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 3555555566556777763
No 234
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.80 E-value=0.0021 Score=62.02 Aligned_cols=72 Identities=11% Similarity=0.199 Sum_probs=57.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC--CcHHHHHHHhcCCCcceEEEe
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ--PRKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~--~~~~~l~~l~~~~~v~~v~~i 598 (600)
|.+-+.-.|+||++.+|+++|+++|+||.+++++.....+.+-|.|.++.. .-+.+.++|.++-++.+|..+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~ 76 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDI 76 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEec
Confidence 677788899999999999999999999999999876666766666666553 345788888888877776653
No 235
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.79 E-value=0.0048 Score=64.50 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=64.7
Q ss_pred cceeccCCEEEEEecCh-hHHHHHHHhhcC----CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccc
Q 007512 191 VGVSLVGKTLAVLGFGK-VGSEVARRAKGL----GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~-IG~~vA~~l~~~----g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.+.++.||++.|||-+. +|+.+|..|... ++.|..+.... -++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999875 699999999754 78999876542 1478889999999999872
Q ss_pred cccccHhHhccCCCceEEEEccCCc
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ 290 (600)
.+++..++ +|+|+++||+|--.
T Consensus 215 p~~i~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGINR 236 (297)
T ss_pred cCccCHHH---cCCCCEEEEccccc
Confidence 34677655 48999999998433
No 236
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.76 E-value=0.003 Score=70.66 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=52.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h-HHHHcCCcccCHHHH--hccCCEEEEecCCC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D-RARAIGVDLVSFDEA--IATADFISLHMPLT 262 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~-~a~~~g~~~~~l~el--l~~aDvV~l~~Pl~ 262 (600)
+..+.|++++|+|.|.+|+.++..+...|++|..+|+.... + .+...+....+++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 34678999999999999999999999999999999876522 1 222223223333332 57899999999965
No 237
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.74 E-value=0.0065 Score=64.62 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=62.2
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCCC-EEEEECCCCCh-h-HHHH----cCCcc---cCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLGM-HVIAHDPYAPA-D-RARA----IGVDL---VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g~-~V~~~d~~~~~-~-~a~~----~g~~~---~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.++++|||.|.+|+..++.+. .++. +|.+|+++... + .+.+ .|+.. .++++.+.+||+|+.|+|..
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--- 205 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--- 205 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC---
Confidence 579999999999999999997 4674 78999987632 2 2222 24432 36889999999999999854
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
.-++..+. +|+|+.+..++
T Consensus 206 ~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred CcEecHHH---cCCCcEEEeeC
Confidence 34555443 68888777665
No 238
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.73 E-value=0.0037 Score=66.22 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHc--------CC------cc-cCHHHHh-ccCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAI--------GV------DL-VSFDEAI-ATADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aDvV~l~~Pl 261 (600)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks 81 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT 81 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence 699999999999999999998999999998642 1111111 11 11 2456665 589999999993
Q ss_pred CccccccccHhHhc-cCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFG-KMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~-~mk~gailvNvarg~ 290 (600)
..+...+.. ... .++++..++.+..|-
T Consensus 82 -~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 82 -QQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred -HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 334544432 222 456777677776654
No 239
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.72 E-value=0.0055 Score=66.67 Aligned_cols=93 Identities=24% Similarity=0.365 Sum_probs=67.3
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCC--hhHHHHcCCcccC---HHHHhccCCEEEEecCCCccccc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP--ADRARAIGVDLVS---FDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~--~~~a~~~g~~~~~---l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
.|.++++.|||.|-||.-+|+.|...| .+|+..++... .+.+.+.|....+ +.+.+.++|+|+.++.. ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 389999999999999999999999998 57888887763 3447778876654 45678999999999652 244
Q ss_pred cccHhHhccC---CCceEEEEccCC
Q 007512 268 VLNDETFGKM---KKGVRIINVARG 289 (600)
Q Consensus 268 li~~~~l~~m---k~gailvNvarg 289 (600)
++....+... ++.-++||.+=.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCC
Confidence 5555544332 222577777643
No 240
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.71 E-value=0.0027 Score=62.79 Aligned_cols=91 Identities=24% Similarity=0.307 Sum_probs=60.7
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-C---hhH----HHHcC-----------------Ccc----
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-P---ADR----ARAIG-----------------VDL---- 242 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~---~~~----a~~~g-----------------~~~---- 242 (600)
..|..++|+|+|+|.+|+.+|..|...|. ++..+|+.. . ..+ ..+.| ++.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 46889999999999999999999998898 799998761 0 000 01111 000
Q ss_pred -----cCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 243 -----VSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 243 -----~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
.++++++.++|+|+-| ..+.+++.++.......++...++.
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1234566777777777 4566677777666666666555555
No 241
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=96.70 E-value=0.0095 Score=53.15 Aligned_cols=105 Identities=16% Similarity=0.296 Sum_probs=72.8
Q ss_pred hhhccHHHHHhhcCceEEEEEeecCCCCCCCCceEEEEEeecccccccccCCCcEEEEEEEEeCCceEEEEEcceEEEee
Q 007512 444 VNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVS 523 (600)
Q Consensus 444 vn~vnA~~~A~e~GI~v~~~~~~~~~~~~~~~n~i~v~~~~~~~~~~~~~~~~~~~~v~Gsv~gG~~~I~~Idgf~v~~~ 523 (600)
-++.++....++.||++.--..... ++| .-++..+. ++..|.+.-... ||-|..
T Consensus 15 GRL~~~~~~L~eagINiRA~tiAdt---~dF-GIiRmvV~--~~d~A~~~Lee~-------------------gF~Vr~- 68 (142)
T COG4747 15 GRLASVANKLKEAGINIRAFTIADT---GDF-GIIRMVVD--RPDEAHSVLEEA-------------------GFTVRE- 68 (142)
T ss_pred chHHHHHHHHHHcCCceEEEEeccc---cCc-ceEEEEcC--ChHHHHHHHHHC-------------------CcEEEe-
Confidence 4677888888999999876544322 245 45565553 344444333222 222222
Q ss_pred cCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 524 LEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 524 g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
...+-+...|+||-+.+|...|++++||+-++.-+-.++ +.|++++.+++-
T Consensus 69 --~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~ 119 (142)
T COG4747 69 --TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI 119 (142)
T ss_pred --eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH
Confidence 245668899999999999999999999999998886555 889999997654
No 242
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=96.69 E-value=0.0051 Score=65.81 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=61.8
Q ss_pred EEEEEecChhHHHHHHHhhcCC--------CEEEEECCCC---ChhHHHH-----------cCC------cc-cCHHHHh
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG--------MHVIAHDPYA---PADRARA-----------IGV------DL-VSFDEAI 249 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g--------~~V~~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 249 (600)
+|+|||.|..|.++|..+...| .+|..|.+.. ..+.... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 5899999999999999997655 8999987621 1111100 022 11 3788999
Q ss_pred ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCC
Q 007512 250 ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 250 ~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg 289 (600)
++||+|++++| ....+.++ .+.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 99999999999 33344443 2333357888999999976
No 243
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.68 E-value=0.0042 Score=65.44 Aligned_cols=91 Identities=23% Similarity=0.305 Sum_probs=65.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH-HHH-------c-CC------c-ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR-ARA-------I-GV------D-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~-a~~-------~-g~------~-~~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||.|.-|.++|..|...|.+|..|.++..... -.. + |+ . ..+++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 5899999999999999999988888888766431110 000 0 22 1 2379999999999999999
Q ss_pred CccccccccHhHhccCCCceEEEEccCCc
Q 007512 262 TPATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 262 ~~~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
..-.+..+..- -..+++++.+|+++.|=
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGi 108 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGL 108 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccc
Confidence 43344444332 24578999999999753
No 244
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.63 E-value=0.008 Score=66.18 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=71.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-C-------CCC-ChhHH------------------HHcCCcccC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-D-------PYA-PADRA------------------RAIGVDLVS 244 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d-------~~~-~~~~a------------------~~~g~~~~~ 244 (600)
|.+|.|+|+.|.|+|++|+..|+.|..+|++|++. | +.- +.+.. ...+....+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 56899999999999999999999999999999983 3 221 11110 011333344
Q ss_pred HHHHh-ccCCEEEEecCCCccccccccHhHhccCCC-ceEEEEc-cCCccccHHHHHHhHhcCCc
Q 007512 245 FDEAI-ATADFISLHMPLTPATSKVLNDETFGKMKK-GVRIINV-ARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 245 l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~-gailvNv-arg~ivde~aL~~aL~~g~i 306 (600)
-++++ ..||+++-|. +.+.|+.+...+++. |+.+|-- |.+ .+..++.. .|.+..|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~-~L~~rgI 360 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIK-VFQDAKI 360 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHH-HHHHCCc
Confidence 45543 4699998776 466788888888764 5655555 456 55555543 3444433
No 245
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.61 E-value=0.0069 Score=65.39 Aligned_cols=92 Identities=22% Similarity=0.276 Sum_probs=61.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCC-------CEEEEECCCCC------hhHHHHc--------CC------c-ccCHHHH
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLG-------MHVIAHDPYAP------ADRARAI--------GV------D-LVSFDEA 248 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g-------~~V~~~d~~~~------~~~a~~~--------g~------~-~~~l~el 248 (600)
-++|+|||.|..|.++|..+...| .+|..|.++.. .+.-.+. |+ . ..+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 458999999999999999997544 78877755432 1111111 12 1 1368889
Q ss_pred hccCCEEEEecCCCccccccccHhHhc--cCCCceEEEEccCCc
Q 007512 249 IATADFISLHMPLTPATSKVLNDETFG--KMKKGVRIINVARGG 290 (600)
Q Consensus 249 l~~aDvV~l~~Pl~~~t~~li~~~~l~--~mk~gailvNvarg~ 290 (600)
++.||+|++++| ....+.++.+ .-. .+++++++|+++.|=
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGI 132 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGI 132 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCc
Confidence 999999999999 3334444422 222 356788999998763
No 246
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.59 E-value=0.0054 Score=51.02 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=44.1
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec----CCCcEEEEEEeCCCCc---HHHHHHHhcC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA----PRKHAVMAIGVDEQPR---KETLKKIGDV 589 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~----~g~~al~~i~~D~~~~---~~~l~~l~~~ 589 (600)
+.+.-+|+||.+++|++.|+++|+||..++..... ..+.-.|.++++-+.. .++.++++.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45667899999999999999999999999997654 2244566777665532 2444445443
No 247
>PRK06046 alanine dehydrogenase; Validated
Probab=96.59 E-value=0.008 Score=63.94 Aligned_cols=86 Identities=19% Similarity=0.319 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCCh-hH-HHH----cCCc---ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAPA-DR-ARA----IGVD---LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~~-~~-a~~----~g~~---~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-+++||||.|.+|+..++.+.. .+. +|.+||++... +. +.+ .++. ..++++++. +|+|++|+|..
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 56779988632 22 222 2432 237888887 99999999954
Q ss_pred cccccHhHhccCCCceEEEEccCC
Q 007512 266 SKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg 289 (600)
.-++..+. +|+|+.|..+|.-
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs~ 225 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGAD 225 (326)
T ss_pred CcEecHHH---cCCCCEEEecCCC
Confidence 35565543 5899998888853
No 248
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.57 E-value=0.0053 Score=64.93 Aligned_cols=90 Identities=28% Similarity=0.279 Sum_probs=54.8
Q ss_pred CEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCC-hh-HH---HHcCCc---ccCHHHHhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAP-AD-RA---RAIGVD---LVSFDEAIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~-~~-~a---~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~~ 267 (600)
+++||||.|..|+.-++.+.. ++ -+|.+|+++.. .+ .+ ...++. ..+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998873 55 48999999862 21 11 122443 237999999999999999865432 5
Q ss_pred cccHhHhccCCCceEEEEccCCcc
Q 007512 268 VLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~i 291 (600)
+++.+ .+|||+.|+.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 56554 4689999999986433
No 249
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.57 E-value=0.0054 Score=58.36 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=50.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC-Cccc--CH-HHHhccCCEEEEecC
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG-VDLV--SF-DEAIATADFISLHMP 260 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aDvV~l~~P 260 (600)
...|.|+++.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 46899999999999999999999999999999999887644332 232 2111 11 234677888877765
No 250
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.56 E-value=0.0098 Score=63.10 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=59.7
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRARAI---------GV----DL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~ 259 (600)
+..++|+|||.|.+|..+|..+...| .++..||.+.....+..+ +. .. .+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 35679999999999999999988667 689999987532212111 11 11 2455 779999999999
Q ss_pred --CCCc-ccc--------cccc--HhHhccCCCceEEEEccC
Q 007512 260 --PLTP-ATS--------KVLN--DETFGKMKKGVRIINVAR 288 (600)
Q Consensus 260 --Pl~~-~t~--------~li~--~~~l~~mk~gailvNvar 288 (600)
|..+ .++ .++. .+.+....|.+++++++-
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4333 111 1110 112333457888888853
No 251
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.0051 Score=50.56 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=39.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
+-+.-+|+||.++.|++.|+++|+||..++......++.-.|.++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4566799999999999999999999999998864455555666666655
No 252
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.52 E-value=0.0068 Score=64.39 Aligned_cols=45 Identities=36% Similarity=0.513 Sum_probs=39.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd 212 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD 212 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc
Confidence 8999999999999999999999999999999987 45667777753
No 253
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.52 E-value=0.0068 Score=63.24 Aligned_cols=69 Identities=22% Similarity=0.233 Sum_probs=50.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChh--HHHHcC-----Ccc---cCHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPAD--RARAIG-----VDL---VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~--~a~~~g-----~~~---~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+.++++.|+|.|..|++++..|...|+ +|..+|+..... .+...+ ... .++.+.+.++|+|+.|+|..
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 4567999999999999999999999997 799999875321 222211 111 23455778899999999954
No 254
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.51 E-value=0.03 Score=59.27 Aligned_cols=104 Identities=16% Similarity=0.101 Sum_probs=70.5
Q ss_pred hHHHHHHHhhcCCCEEEEECCCCCh--------hH-----------HHHcC-------------Cccc-C--HHHHhccC
Q 007512 208 VGSEVARRAKGLGMHVIAHDPYAPA--------DR-----------ARAIG-------------VDLV-S--FDEAIATA 252 (600)
Q Consensus 208 IG~~vA~~l~~~g~~V~~~d~~~~~--------~~-----------a~~~g-------------~~~~-~--l~ell~~a 252 (600)
||..+|..+...|++|..||++... +. ..+.| +..+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999889999999988721 11 11112 1122 2 55788999
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhc-CCceEEEEeccC
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS-GRVAQAALDVFT 315 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~-g~i~ga~lDv~~ 315 (600)
|+|+-++|-..+.+.-+-.+..+.++++++|....++ +....|.+.++. .++ .+++.|.
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~--~g~Hf~~ 140 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVAHPERF--LNAHWLN 140 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcCCcccE--EEEecCC
Confidence 9999999998888877767777789999999554443 345666655532 344 4444443
No 255
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=96.51 E-value=0.054 Score=57.03 Aligned_cols=93 Identities=25% Similarity=0.321 Sum_probs=63.7
Q ss_pred eccCCEEEEEecC---hhHHHHHHHhhcCCCEEEEECCCC---Ch---hHHHHcCCc---ccCHHHHhccCCEEEEecCC
Q 007512 194 SLVGKTLAVLGFG---KVGSEVARRAKGLGMHVIAHDPYA---PA---DRARAIGVD---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 194 ~l~gktiGIIGlG---~IG~~vA~~l~~~g~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl 261 (600)
.+.|++|+++|-| ++..+++..+..+|++|....|.. +. +.+++.|.. ..++++.++.||+|..-. .
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~ 225 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-I 225 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-c
Confidence 4789999999995 999999999999999999987754 21 233445654 248999999999997732 1
Q ss_pred Ccc------------ccccccHhHhccCCCceEEEEcc
Q 007512 262 TPA------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 262 ~~~------------t~~li~~~~l~~mk~gailvNva 287 (600)
..+ ...-++++.++.+|+++++.-|.
T Consensus 226 ~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 226 QKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred cccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 100 01223555555566666666554
No 256
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=96.50 E-value=0.051 Score=57.28 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=80.7
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhc
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKG 218 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~ 218 (600)
+...+++|+|+.+...-++ .+++=++.+.++ .| .+.|.+|+++|= +++.++++..+..
T Consensus 116 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~ 174 (304)
T PRK00779 116 AEYSTVPVINGLTDLSHPC--QILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAAAL 174 (304)
T ss_pred HHhCCCCEEeCCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHHHH
Confidence 4445689999976443333 233333333321 12 367899999998 7899999999999
Q ss_pred CCCEEEEECCCC--Ch-hH----HHHcCCc---ccCHHHHhccCCEEEEec----CCCc---c-----ccccccHhHhcc
Q 007512 219 LGMHVIAHDPYA--PA-DR----ARAIGVD---LVSFDEAIATADFISLHM----PLTP---A-----TSKVLNDETFGK 276 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~----Pl~~---~-----t~~li~~~~l~~ 276 (600)
+|++|....|.. .. +. +++.|.. ..++++.+++||+|..-. +... + -..-++++.++.
T Consensus 175 ~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~ 254 (304)
T PRK00779 175 LGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMAL 254 (304)
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHh
Confidence 999999988754 21 11 3445643 248999999999998741 1100 0 123345566666
Q ss_pred CCCceEEEEcc
Q 007512 277 MKKGVRIINVA 287 (600)
Q Consensus 277 mk~gailvNva 287 (600)
+|++++|.-|.
T Consensus 255 ~~~~~ivmHpl 265 (304)
T PRK00779 255 AKPDAIFMHCL 265 (304)
T ss_pred cCCCeEEecCC
Confidence 66666666664
No 257
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.46 E-value=0.0077 Score=48.50 Aligned_cols=62 Identities=18% Similarity=0.337 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGD 588 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~ 588 (600)
+.+-+..+|+||.++.++++|+++|+||.++...+...+..+.+.+.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 456778899999999999999999999999988775433356666776532 23456666654
No 258
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=96.45 E-value=0.045 Score=58.48 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
+...+|+|+|+-+...-++ .+++=++.+.++ .|..+.|++|++||=+ ++..+++..+.
T Consensus 119 a~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~ 178 (334)
T PRK01713 119 AEYAGVPVFNGLTDEFHPT--QMLADVLTMIEN------------------CDKPLSEISYVYIGDARNNMGNSLLLIGA 178 (334)
T ss_pred HHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------cCCCcCCcEEEEECCCccCHHHHHHHHHH
Confidence 3445689999866443333 222223332221 2334789999999986 67888999999
Q ss_pred cCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEec----CCCcc---------ccccccH
Q 007512 218 GLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLHM----PLTPA---------TSKVLND 271 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~~----Pl~~~---------t~~li~~ 271 (600)
.+|++|..+.|.. +.+ .+...|.. ..++++.+++||+|..-+ ....+ ....+++
T Consensus 179 ~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ 258 (334)
T PRK01713 179 KLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTP 258 (334)
T ss_pred HcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCH
Confidence 9999999988754 211 12334543 248999999999998732 10000 1223577
Q ss_pred hHhccC-CCceEEEEcc
Q 007512 272 ETFGKM-KKGVRIINVA 287 (600)
Q Consensus 272 ~~l~~m-k~gailvNva 287 (600)
+.++.. |++++|.-|.
T Consensus 259 ell~~a~k~~aivmH~l 275 (334)
T PRK01713 259 ELMKRTGNPKVKFMHCL 275 (334)
T ss_pred HHHhccCCCCCEEECCC
Confidence 777765 6888888775
No 259
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.44 E-value=0.035 Score=56.88 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=70.1
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE--------CCCC-ChhHH------H-Hc------------CCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--------DPYA-PADRA------R-AI------------GVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~--------d~~~-~~~~a------~-~~------------g~~~~ 243 (600)
+.++.|+|+.|-|+|++|+.+|+.|...|++|++. ||.- +.+.. + +. +.+..
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 46889999999999999999999999999999953 3432 21110 0 11 12333
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccCC--CceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKMK--KGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk--~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+-++++ .+||+++-|. +.+.|+.+....++ +=.+|+-.+-+++-. ++ -+.|.++.|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 444443 4699998875 46678888777774 234566666677644 33 344555544
No 260
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.44 E-value=0.011 Score=65.18 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=69.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEE-C-------CCC-ChhHH---HH------------cCCcccCHHH
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH-D-------PYA-PADRA---RA------------IGVDLVSFDE 247 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~-d-------~~~-~~~~a---~~------------~g~~~~~l~e 247 (600)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | |.- +.+.. ++ .+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 45789999999999999999999999999999986 5 221 22210 00 0222334445
Q ss_pred Hhc-cCCEEEEecCCCccccccccHhHhccCC-Cce-EEEEccCCccccHHHHHHhHhcCCc
Q 007512 248 AIA-TADFISLHMPLTPATSKVLNDETFGKMK-KGV-RIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 248 ll~-~aDvV~l~~Pl~~~t~~li~~~~l~~mk-~ga-ilvNvarg~ivde~aL~~aL~~g~i 306 (600)
++. +||+++-|.+ .+.|+.+....++ ++| +|+-.+-+++ ..++ -+.|.++.|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 544 6999998886 4457777666663 233 5556667776 4443 334655544
No 261
>PRK04435 hypothetical protein; Provisional
Probab=96.44 E-value=0.01 Score=55.79 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=57.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCc----HHHHHHHhcCCCcceEEEee
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPR----KETLKKIGDVPAIEEFVFLK 599 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~----~~~l~~l~~~~~v~~v~~i~ 599 (600)
--+|.+...|+||+++.|.+.|+++++||-.++.. ...++.+-+.+.++.... .+++++|+++++|.+++.+-
T Consensus 69 ~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~-i~~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 69 IITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQS-IPLQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEE-cCCCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 44566778999999999999999999999999864 233455666666654432 38999999999999998874
No 262
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.43 E-value=0.012 Score=60.37 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=58.2
Q ss_pred CEEEEEecChhHHHHHHHhhcC---CCEEEE-ECCCCChhHHHHcCCcc-cCHHHH-hccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL---GMHVIA-HDPYAPADRARAIGVDL-VSFDEA-IATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~---g~~V~~-~d~~~~~~~a~~~g~~~-~~l~el-l~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
++|||||+|.||+.+++.+..- ++++.+ ||+...........+.. .+++++ ....|+|+=|.+... +-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~a-----v~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQA-----IAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHH-----HHH
Confidence 6899999999999999998743 366554 56554222222222443 379997 588999999987332 212
Q ss_pred hHhccCCCceEEEEccCCcccc
Q 007512 272 ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivd 293 (600)
--..-|+.|.-++=.+-|.+.|
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD 99 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALAD 99 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcC
Confidence 2222245566666666688876
No 263
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.43 E-value=0.0051 Score=51.23 Aligned_cols=47 Identities=13% Similarity=0.223 Sum_probs=37.7
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
.+.+.-+|+||+++.|++.|+++|.||.+++... .++.-.|++.++-
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~ 49 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEG 49 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEe
Confidence 3456689999999999999999999999999986 4555555555553
No 264
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=96.39 E-value=0.06 Score=56.77 Aligned_cols=126 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcC
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGL 219 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~ 219 (600)
+.-+|+|+|+-+...-++ .+++=++.+.++ .| .+.|.+|+++|- +++-++++..+..|
T Consensus 113 ~~~~vPVINa~~~~~HPt--QaL~Dl~Ti~e~------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~ 171 (304)
T TIGR00658 113 KYASVPVINGLTDLFHPC--QALADLLTIIEH------------------FG-KLKGVKVVYVGDGNNVCNSLMLAGAKL 171 (304)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CCCCcEEEEEeCCCchHHHHHHHHHHc
Confidence 334689999865443333 223333333221 12 277999999997 78999999999999
Q ss_pred CCEEEEECCCC--ChhH--------HHHcCCc---ccCHHHHhccCCEEEEec--CCCc----------cccccccHhHh
Q 007512 220 GMHVIAHDPYA--PADR--------ARAIGVD---LVSFDEAIATADFISLHM--PLTP----------ATSKVLNDETF 274 (600)
Q Consensus 220 g~~V~~~d~~~--~~~~--------a~~~g~~---~~~l~ell~~aDvV~l~~--Pl~~----------~t~~li~~~~l 274 (600)
|++|....|.. ..+. +.+.|.. ..++++.+++||+|..-. .... -....++++.+
T Consensus 172 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l 251 (304)
T TIGR00658 172 GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELM 251 (304)
T ss_pred CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHH
Confidence 99999987754 1111 2334542 248999999999998842 1110 01224566666
Q ss_pred ccCCCceEEEEcc
Q 007512 275 GKMKKGVRIINVA 287 (600)
Q Consensus 275 ~~mk~gailvNva 287 (600)
+.+|+++++.-|.
T Consensus 252 ~~~~~~~ivmHpl 264 (304)
T TIGR00658 252 ELAKPEVIFMHCL 264 (304)
T ss_pred hhcCCCCEEECCC
Confidence 6677777766664
No 265
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.37 E-value=0.011 Score=45.80 Aligned_cols=65 Identities=12% Similarity=0.384 Sum_probs=48.9
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC---cHHHHHHHhcCCCcceEE
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP---RKETLKKIGDVPAIEEFV 596 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~---~~~~l~~l~~~~~v~~v~ 596 (600)
+...|+||.++.+.+.|+++++||.++...... ++...+.+.++.+- -..++++|+.+++|..+.
T Consensus 3 v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 3 VEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 557799999999999999999999999886432 34466666665332 236788888888887653
No 266
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.37 E-value=0.012 Score=62.44 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=64.1
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-hH----HHHcCCcc---cCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-DR----ARAIGVDL---VSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~~----a~~~g~~~---~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. ..+.++.. .+.++++++||+|+.|+|.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 5699999999999999998873 33 489999998732 21 22224432 37899999999999998844 4
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
-+++.+ .+|||+.|+.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 566655 3589999999985
No 267
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.35 E-value=0.014 Score=62.02 Aligned_cols=86 Identities=27% Similarity=0.309 Sum_probs=64.4
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCC-hhH-H---HHc-CC--c-ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAP-ADR-A---RAI-GV--D-LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~-~~~-a---~~~-g~--~-~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-++++|||.|..++.-.+.++. ++. +|.+|+++.. .+. + .+. +. . ..+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4589999999999999999984 454 8999998873 222 2 122 22 2 3378999999999999999664
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
-++..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5565554 579999999984
No 268
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=96.34 E-value=0.0084 Score=56.35 Aligned_cols=65 Identities=8% Similarity=0.265 Sum_probs=55.7
Q ss_pred ecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCcHHHHHHHhcCCCcceEEE
Q 007512 533 QVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 533 ~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~~~~l~~l~~~~~v~~v~~ 597 (600)
-.+.||+++.|.+.++++||+|-..-..--+-.+++.+.|=++.++|.+++.+|+++++|..+..
T Consensus 102 ~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 102 DARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred cCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 45789999999999999999998876653335667888888899999999999999999988753
No 269
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.008 Score=47.97 Aligned_cols=59 Identities=14% Similarity=0.281 Sum_probs=44.2
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeec---CCCcEEEEEEeCCCCcH---HHHHHHhc
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA---PRKHAVMAIGVDEQPRK---ETLKKIGD 588 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~---~g~~al~~i~~D~~~~~---~~l~~l~~ 588 (600)
-+..+|+||.++.|.+.++++++||..+...+.. ..+.+.+.+.++-.-.+ +++++|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999987643 24556666666554333 66677665
No 270
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.33 E-value=0.02 Score=57.38 Aligned_cols=104 Identities=29% Similarity=0.334 Sum_probs=65.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCCC-------ChhH----HHHc-CCcc------cCHHHHh-ccC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPYA-------PADR----ARAI-GVDL------VSFDEAI-ATA 252 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~~-------~~~~----a~~~-g~~~------~~l~ell-~~a 252 (600)
.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|.+. +.+. ..+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 478899999999999999999999999987766 45433 1111 1111 1211 1113332 479
Q ss_pred CEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcC
Q 007512 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 253 DvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g 304 (600)
|+++-|.+- +.++.+....++ -.+|+-.+.+++-+ ++ .+.|.+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~-~a-~~~L~~~ 142 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD-EA-LRILHER 142 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH-HH-HHHHHHC
Confidence 999999873 357777777776 23455555666644 33 3344443
No 271
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.31 E-value=0.03 Score=61.76 Aligned_cols=108 Identities=27% Similarity=0.394 Sum_probs=70.8
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE--------ECCCC-ChhHH------H------------Hc-CCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--------HDPYA-PADRA------R------------AI-GVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~--------~d~~~-~~~~a------~------------~~-g~~~~ 243 (600)
|.+|.|+|+.|=|+|++|+..|+.|...|++|++ |||.- +.+.. + .. |.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5579999999999999999999999999999999 88764 43220 0 11 33333
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccCC-Cce-EEEEccCCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKMK-KGV-RIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~mk-~ga-ilvNvarg~ivde~aL~~aL~~g~i 306 (600)
+-++++ ..||+.+-|. +.+.|+.+....+. .+| +|+--+-+ .+..++- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 444444 3588887776 45667777766662 223 45555556 4554443 34555444
No 272
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.31 E-value=0.0089 Score=48.75 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=42.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec-CCCcEEEEEEeCCCCc---HHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA-PRKHAVMAIGVDEQPR---KETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~-~g~~al~~i~~D~~~~---~~~l~~l~~ 588 (600)
+-+..+|+||.++.++++|+++|+||-.+...|.. ..+.....+.++.+.+ ++++++|++
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhC
Confidence 34567999999999999999999999999888752 2233444555544333 256666654
No 273
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.30 E-value=0.0037 Score=56.53 Aligned_cols=85 Identities=19% Similarity=0.388 Sum_probs=51.5
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEE-ECCCCC--hhHHHHc----CCc---ccC-HHHHhccCCEEEEecCCCccc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIA-HDPYAP--ADRARAI----GVD---LVS-FDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~-~d~~~~--~~~a~~~----g~~---~~~-l~ell~~aDvV~l~~Pl~~~t 265 (600)
+|+||| .|.+|+.+.++|... .+++.. +++..+ ....... +.. ..+ -.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 999999999999864 677654 333321 1111111 121 111 2244599999999999432 2
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
..+.. . + +++|+.+||.+.
T Consensus 80 ~~~~~-~-~--~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELAP-K-L--LKAGIKVIDLSG 98 (121)
T ss_dssp HHHHH-H-H--HHTTSEEEESSS
T ss_pred HHHHH-H-H--hhCCcEEEeCCH
Confidence 22221 1 1 578999999973
No 274
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.28 E-value=0.0058 Score=56.92 Aligned_cols=106 Identities=18% Similarity=0.244 Sum_probs=70.5
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc--------------C-HHHHhccCCEEEEecCCCcc
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV--------------S-FDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aDvV~l~~Pl~~~ 264 (600)
|.|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... + ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999989999999987653333445554221 1 124678899999999844 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceE
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQ 308 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~g 308 (600)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.+
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~ 121 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLG 121 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEE
Confidence 4554433 34446677677766555 334666666665556655
No 275
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.28 E-value=0.0082 Score=59.74 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=60.4
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCE-EEEECCCCChhHHH--HcCC-cccCHHHHhccCCEEEEecCCCccccccccH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMH-VIAHDPYAPADRAR--AIGV-DLVSFDEAIATADFISLHMPLTPATSKVLND 271 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~-V~~~d~~~~~~~a~--~~g~-~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~ 271 (600)
.+|||||+|.||+.+.+.++.- +++ +.+||+........ ..+. ...++++++++.|+++=|..... .+.+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~A-v~e~--- 76 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEA-VREY--- 76 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHH-HHHH---
Confidence 3799999999999999999843 454 56799876433222 2232 23579999999999999886222 2222
Q ss_pred hHhccCCCceEEEEccCCccccHH
Q 007512 272 ETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 272 ~~l~~mk~gailvNvarg~ivde~ 295 (600)
..+.||.|.=++=++-|.+.|+.
T Consensus 77 -~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 77 -VPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred -hHHHHhcCCCEEEEechhccChH
Confidence 22334555444444457777554
No 276
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.26 E-value=0.01 Score=65.90 Aligned_cols=109 Identities=21% Similarity=0.263 Sum_probs=68.4
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-h-----hHHHHcCCccc---CHHHHhccCCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-A-----DRARAIGVDLV---SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~ 264 (600)
.+.+++|+|+|+|..|.++|+.|+..|++|.++|.+.. . ....+.|+... ...+.+.++|+|+.. |--+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 45689999999999999999999999999999997642 1 22445576543 234556889999886 54332
Q ss_pred ccc-----------cccHh-HhccC-CCceEEEEccCCccccHHHHHHhHhc
Q 007512 265 TSK-----------VLNDE-TFGKM-KKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t~~-----------li~~~-~l~~m-k~gailvNvarg~ivde~aL~~aL~~ 303 (600)
+.. ++++- .+... +...+-|-=+.|+.-..+-+...|+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 222 22221 12122 22233333346877555555565654
No 277
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.25 E-value=0.013 Score=63.56 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=64.8
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC--CEEEEECCCCCh-h-HHH----Hc-CC---c-ccCHHHHhccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG--MHVIAHDPYAPA-D-RAR----AI-GV---D-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g--~~V~~~d~~~~~-~-~a~----~~-g~---~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
-++++|||.|..++.-.+.+.. +. -+|.+||+.... + .+. .. ++ . ..+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4689999999999999998875 42 489999998732 2 111 11 22 2 237999999999999999854
Q ss_pred c---cccccccHhHhccCCCceEEEEccCCc
Q 007512 263 P---ATSKVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 263 ~---~t~~li~~~~l~~mk~gailvNvarg~ 290 (600)
. .+.-++..+. +|||+.|+.++.-+
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e 262 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAACR 262 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence 3 2345666554 58999888776543
No 278
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.24 E-value=0.01 Score=49.03 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.7
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeee
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV 562 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~ 562 (600)
-+.-+|+||+++.|++.|+++|+||.+++....
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~ 35 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVI 35 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEE
Confidence 456789999999999999999999999975443
No 279
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.23 E-value=0.021 Score=60.08 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=62.3
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CCC-EEEEECCCCCh-h-HHHH----cCCc--c-cCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LGM-HVIAHDPYAPA-D-RARA----IGVD--L-VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g~-~V~~~d~~~~~-~-~a~~----~g~~--~-~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.+ .|++ . .+.++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 5799999999999999888874 443 89999988732 2 1222 2443 2 37999999999999998844
Q ss_pred cccccHhHhccCCCceEEEEccC
Q 007512 266 SKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvar 288 (600)
.-++..+. +|||+.+.-+|.
T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301)
T ss_pred CcEecHHH---cCCCceEEecCC
Confidence 45565553 578877776664
No 280
>PLN02527 aspartate carbamoyltransferase
Probab=96.21 E-value=0.11 Score=54.93 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=62.3
Q ss_pred eccCCEEEEEecC---hhHHHHHHHhhcC-CCEEEEECCCC---Ch---hHHHHcCCcc---cCHHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFG---KVGSEVARRAKGL-GMHVIAHDPYA---PA---DRARAIGVDL---VSFDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG---~IG~~vA~~l~~~-g~~V~~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~~P 260 (600)
.+.|.||++||-+ ++..+++..+..+ |++|....|.. +. +.+.+.|... .++++.+++||+|..-.-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence 3779999999976 6899999998887 99998887743 21 1233445532 489999999999988431
Q ss_pred CCcc-------------ccccccHhHhccCCCceEEEEcc
Q 007512 261 LTPA-------------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~~~-------------t~~li~~~~l~~mk~gailvNva 287 (600)
..+ -...++++.++.+|++++|.-|.
T Consensus 228 -q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHcl 266 (306)
T PLN02527 228 -QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPL 266 (306)
T ss_pred -chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCC
Confidence 100 01334555555566666666554
No 281
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.21 E-value=0.011 Score=64.88 Aligned_cols=67 Identities=24% Similarity=0.227 Sum_probs=46.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH-HcCCc-ccCHHHHhccCCEEEEecCCCc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AIGVD-LVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~g~~-~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ...-. ....+....++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 4689999999999999999999999999999875321110 00001 1123344578999988876554
No 282
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=96.20 E-value=0.095 Score=56.05 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=49.2
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC---ChhH---H----HHcCC--c-ccCHHHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA---PADR---A----RAIGV--D-LVSFDEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~---~~~~---a----~~~g~--~-~~~l~ell~~aDvV~l 257 (600)
.+.|++|++||= .++..+++..+..+|++|..+.|.. +.+. + ...|. . ..++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 578999999997 6888899999999999999988753 2111 1 22353 2 2489999999999988
No 283
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.15 E-value=0.019 Score=61.07 Aligned_cols=90 Identities=11% Similarity=0.051 Sum_probs=56.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
.+.|+++.|||.|.||+.+++.|...|. +|+..++........... ...-+...++|+|+.|.-.|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4789999999999999999999999885 688888875211110000 011144678999998742222223345555
Q ss_pred HhccCCCceEEEEcc
Q 007512 273 TFGKMKKGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk~gailvNva 287 (600)
.+...++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5543332 3677765
No 284
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.15 E-value=0.019 Score=60.40 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------CC--cc-cCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------GV--DL-VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g~--~~-~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|||.|.+|+.+|..|...| .+|..+|+......+... +. .. ..-.+.+++||+|+++.....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence 48999999999999999998777 489999987643222211 11 11 122245799999999997532
Q ss_pred ccccc-----c--cH-------hHhccCCCceEEEEccCCcccc
Q 007512 264 ATSKV-----L--ND-------ETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ~t~~l-----i--~~-------~~l~~mk~gailvNvarg~ivd 293 (600)
..++ + |. +.+.+..|.+++++++ ..+|
T Consensus 81 -~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 81 -KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 1121 1 11 1233356788888886 4445
No 285
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.018 Score=47.27 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=44.4
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC----CCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD----EQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D----~~~~~~~l~~l~~ 588 (600)
.+.+..+|+||+++.|+.+|.++++||....+... ++.++-.+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56778899999999999999999999999988643 44666666652 2234456666654
No 286
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.12 E-value=0.052 Score=55.44 Aligned_cols=106 Identities=32% Similarity=0.456 Sum_probs=70.6
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEE--------CCCC-ChhHH----HHcCC--c-----------ccCHH-
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--------DPYA-PADRA----RAIGV--D-----------LVSFD- 246 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~--------d~~~-~~~~a----~~~g~--~-----------~~~l~- 246 (600)
.+.|+++.|=|+|.+|+.+|+.|...|++|++. ||.. +.+.. .+.+. . +.+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 699999999999999999999999999999885 6654 22211 12222 1 11222
Q ss_pred HHh-ccCCEEEEecCCCccccccccHhHhc-cCCCceEEEEcc-CCccccHHHHHHhHhcCCc
Q 007512 247 EAI-ATADFISLHMPLTPATSKVLNDETFG-KMKKGVRIINVA-RGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 247 ell-~~aDvV~l~~Pl~~~t~~li~~~~l~-~mk~gailvNva-rg~ivde~aL~~aL~~g~i 306 (600)
+++ ..||+++.|.- .+.|+.+... .++.++.+|=-+ -+.+ ..++.. .|.+..|
T Consensus 109 ~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI 164 (244)
T PF00208_consen 109 EILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGI 164 (244)
T ss_dssp HGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-
T ss_pred ccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCC
Confidence 555 58999999853 4557888777 777776666554 5555 444443 5666555
No 287
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.12 E-value=0.02 Score=62.75 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=64.1
Q ss_pred eccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCc
Q 007512 194 SLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 194 ~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+.....+ ...++++.++.||+|+++++-.+
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~~ 388 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHDE 388 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCHH
Confidence 689999999998 4467789999999999999999997543322222 13578899999999999998433
Q ss_pred cccccccHhHhc-cCCCceEEEEc
Q 007512 264 ATSKVLNDETFG-KMKKGVRIINV 286 (600)
Q Consensus 264 ~t~~li~~~~l~-~mk~gailvNv 286 (600)
-+. ++-+.+. .|+ ..+++|+
T Consensus 389 -~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 389 -FKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred -Hhc-cCHHHHHHhcC-CCEEEeC
Confidence 222 3434443 354 4578884
No 288
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.10 E-value=0.0051 Score=52.39 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=45.2
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCC----cHHHHHHHhcC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQP----RKETLKKIGDV 589 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~----~~~~l~~l~~~ 589 (600)
+.+.+.-+|+||+++.|++.|+++|+||..++... .++.-.|.+.++-+. ..++.+.+..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999999999998874 456677777766543 23444444444
No 289
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=96.07 E-value=0.019 Score=59.25 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=44.3
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCChhH-HHHc--CCc-ccCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAPADR-ARAI--GVD-LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~~~~-a~~~--g~~-~~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|||||+|.||+.+++.+... ++++.+ +++...... .... ++. ..+++++-.+.|+|+.|+|..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~ 72 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA 72 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH
Confidence 4899999999999999999865 566544 344332222 1212 343 346888755699999999943
No 290
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.07 E-value=0.019 Score=61.57 Aligned_cols=88 Identities=26% Similarity=0.273 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhh-cCC-CEEEEECCCCCh-h-HH---HHcCCc---ccCHHHHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAK-GLG-MHVIAHDPYAPA-D-RA---RAIGVD---LVSFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~-~~g-~~V~~~d~~~~~-~-~a---~~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
-++++|||.|..++.-++.+. -+. -+|.+|++.... + .+ .+.+++ ..++++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 468999999999999888776 344 489999988632 1 11 222433 2479999999999999998432 22
Q ss_pred ccccHhHhccCCCceEEEEccC
Q 007512 267 KVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvar 288 (600)
-++..+ .+|||+.|.-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 445554 3589988777764
No 291
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.00 E-value=0.03 Score=59.68 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=58.1
Q ss_pred CCEEEEEecChhHHHHHHHhhc-CC-CEEEEECCCCCh-hH-HH----HcCCc---ccCHHHHhccCCEEEEecCCCccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKG-LG-MHVIAHDPYAPA-DR-AR----AIGVD---LVSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~-~g-~~V~~~d~~~~~-~~-a~----~~g~~---~~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
.++++|||.|.+|+..+..+.. .+ -+|..|+++... +. +. ..|+. ..++++++.+||+|+.++|..
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--- 208 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--- 208 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC---
Confidence 5799999999999999888874 55 479999987632 21 22 12444 247889999999999999854
Q ss_pred cccccHhHhccCCCceEEE
Q 007512 266 SKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailv 284 (600)
..++..+. +++|+.+.
T Consensus 209 ~p~i~~~~---l~~g~~v~ 224 (330)
T PRK08291 209 EPILKAEW---LHPGLHVT 224 (330)
T ss_pred CcEecHHH---cCCCceEE
Confidence 34555443 56776543
No 292
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.047 Score=58.82 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=70.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCC---------------------cc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV---------------------DL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~---------------------~~-~~l~ell~~aDvV 255 (600)
++|.|||.|-+|-..+..+..+|.+|+.+|.....-.....|. .. .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 5799999999999999999999999999986543222222221 11 3677889999999
Q ss_pred EEecCCCccccccccHh--------HhccCCCceEEEEccCCccccHHHHHH
Q 007512 256 SLHMPLTPATSKVLNDE--------TFGKMKKGVRIINVARGGVIDEEALVR 299 (600)
Q Consensus 256 ~l~~Pl~~~t~~li~~~--------~l~~mk~gailvNvarg~ivde~aL~~ 299 (600)
++|+|..+...+-++-. ....++..+++|+=+.-.+=..+.+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 99999555434444332 344577669999988755544444443
No 293
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.99 E-value=0.041 Score=61.46 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=70.4
Q ss_pred eeccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHHH-Hc----------------------C
Q 007512 193 VSLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AI----------------------G 239 (600)
Q Consensus 193 ~~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~----------------------g 239 (600)
..+.|++|+|+|+ ..-...+++.|...|.+|.+|||....+... .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3589999999998 4577889999999999999999997443221 11 1
Q ss_pred Cccc-CHHHHhccCCEEEEecCCCccccccccHh-HhccCCCceEEEEccCCccccHHHH
Q 007512 240 VDLV-SFDEAIATADFISLHMPLTPATSKVLNDE-TFGKMKKGVRIINVARGGVIDEEAL 297 (600)
Q Consensus 240 ~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~-~l~~mk~gailvNvarg~ivde~aL 297 (600)
+.+. ++.+.++.||+|+++++-. +-+.+ +-+ ....|++..+|+|+ |+ +++.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-rn-~l~~~~~ 455 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-RN-VLDHEKL 455 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 1222 5678999999999999844 33333 333 34557766689995 43 4466655
No 294
>PLN02477 glutamate dehydrogenase
Probab=95.98 E-value=0.14 Score=56.15 Aligned_cols=107 Identities=28% Similarity=0.345 Sum_probs=68.5
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECC-------CC-ChhHHHH----c-------CCcccCHHHH-hc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDP-------YA-PADRARA----I-------GVDLVSFDEA-IA 250 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~-------~~-~~~~a~~----~-------g~~~~~l~el-l~ 250 (600)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|. .- +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 5588999999999999999999999999999995 343 22 2222111 0 1122233333 34
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
.||+++-|. ..+.|+++...+++ -.+|+-.+-+++ ..++ -+.|.+..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 788887776 34567887777764 345666667776 4433 345665544
No 295
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.97 E-value=0.016 Score=62.23 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=58.3
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCCh-h-HHHHc----C-----CcccCHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPA-D-RARAI----G-----VDLVSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~-~-~a~~~----g-----~~~~~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|+|. |.+|+.+++.|..+ +.++.. ++++.+. + ..... + +...+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 788884 4654311 1 11111 1 11124566667899999999943
Q ss_pred cccccccHhHhcc-CCCceEEEEccCCcccc
Q 007512 264 ATSKVLNDETFGK-MKKGVRIINVARGGVID 293 (600)
Q Consensus 264 ~t~~li~~~~l~~-mk~gailvNvarg~ivd 293 (600)
.. .+.... .+.|+.+||.+..-=++
T Consensus 80 ~s-----~~~~~~~~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 80 VS-----AELAPELLAAGVKVIDLSADFRLK 105 (346)
T ss_pred HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence 22 333332 35789999998543344
No 296
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.93 E-value=0.016 Score=62.04 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=26.5
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEEE-CCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIAH-DPY 229 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~~-d~~ 229 (600)
.+|||+|+|+||+.+++.+... ++++.+. |+.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 3799999999999999998855 7998874 543
No 297
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=95.92 E-value=0.071 Score=56.96 Aligned_cols=98 Identities=24% Similarity=0.226 Sum_probs=65.3
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccc-eeccCCEEEEEecC--hhHHHHHHHhh
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVG-VSLVGKTLAVLGFG--KVGSEVARRAK 217 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktiGIIGlG--~IG~~vA~~l~ 217 (600)
...+|+|+|+-+...-++ .+++=++.+.++ .| ..+.|.+|++||-+ ++..+++..+.
T Consensus 119 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~ 178 (336)
T PRK03515 119 EYAGVPVWNGLTNEFHPT--QLLADLLTMQEH------------------LPGKAFNEMTLAYAGDARNNMGNSLLEAAA 178 (336)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hCCCCcCCCEEEEeCCCcCcHHHHHHHHHH
Confidence 345689999865443333 233333333321 12 24789999999976 68999999999
Q ss_pred cCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 218 GLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 218 ~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.+|+++....|.. +.. .+...|.. ..++++.+++||+|..-
T Consensus 179 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 179 LTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred HcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 9999999987754 211 12334543 24899999999999884
No 298
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.89 E-value=0.032 Score=58.59 Aligned_cols=62 Identities=23% Similarity=0.375 Sum_probs=44.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------CC--c--c-cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------GV--D--L-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g~--~--~-~~l~ell~~aDvV~l~~P 260 (600)
++|+|||.|.+|..+|..+...|. +|..||.......+... +. . . .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999986554 99999986532222111 11 1 1 245 45899999999964
No 299
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.88 E-value=0.093 Score=55.36 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=48.5
Q ss_pred eccCCEEEEEec---ChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc-ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGF---GKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD-LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGl---G~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 258 (600)
.+.|++|++||- +++..+++..+..||+++....|.. .+.. . ..+. ..++++.+++||+|..-
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~-~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-M-PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-c-cceEEECCHHHHhCCCCEEEEC
Confidence 377999999998 5899999999999999999988754 2111 0 0112 34899999999999774
No 300
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.86 E-value=0.08 Score=50.40 Aligned_cols=92 Identities=18% Similarity=0.274 Sum_probs=66.5
Q ss_pred cCCEEEEEe--cChhHHHHHHHhhcCCCEEEEECCCC---Ch--h-------HHHHcCC--cc-cCHHHHhccCCEEEEe
Q 007512 196 VGKTLAVLG--FGKVGSEVARRAKGLGMHVIAHDPYA---PA--D-------RARAIGV--DL-VSFDEAIATADFISLH 258 (600)
Q Consensus 196 ~gktiGIIG--lG~IG~~vA~~l~~~g~~V~~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aDvV~l~ 258 (600)
.|+||++|| -+++..+++..+..||+++..+.|.. +. + .+...|. .. .++++.+++||+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988765 22 1 1223343 22 4899999999999876
Q ss_pred cCC----Ccc-------ccccccHhHhccCCCceEEEEcc
Q 007512 259 MPL----TPA-------TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl----~~~-------t~~li~~~~l~~mk~gailvNva 287 (600)
.-. .+. ....++++.++.+|++++|.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 553 110 11456888888889999999986
No 301
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=95.85 E-value=0.098 Score=55.83 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=80.0
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~ 218 (600)
....|+|+|+-+...-++ .+++=++.+.+++ .| .+.|++|++||-+ ++.++.+..+..
T Consensus 119 ~~s~vPVINa~~~~~HPt--QaL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~ 178 (332)
T PRK04284 119 EYSGVPVWNGLTDEDHPT--QVLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQGAAI 178 (332)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHHHHH
Confidence 345688999865444333 2333333333310 12 3779999999975 889999999999
Q ss_pred CCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEecCC--Cc-----------cccccccHh
Q 007512 219 LGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLHMPL--TP-----------ATSKVLNDE 272 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~~Pl--~~-----------~t~~li~~~ 272 (600)
+|++|...-|.. +.+ .+...|.. ..++++.+++||+|..-.=. .. --...++++
T Consensus 179 ~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e 258 (332)
T PRK04284 179 MGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKE 258 (332)
T ss_pred cCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHH
Confidence 999999988753 211 12234542 24899999999999884210 00 012345667
Q ss_pred HhccCC-CceEEEEcc
Q 007512 273 TFGKMK-KGVRIINVA 287 (600)
Q Consensus 273 ~l~~mk-~gailvNva 287 (600)
.++.+| |+++|.-|.
T Consensus 259 ~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 259 MMKKTGNPNAIFEHCL 274 (332)
T ss_pred HHhhcCCCCcEEECCC
Confidence 777775 477777774
No 302
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=95.84 E-value=0.0088 Score=49.64 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=32.9
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
+.-+|+||+++.|++.|+++|.||.+++..+....=..++.++.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 446999999999999999999999999998654333355666665
No 303
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.79 E-value=0.021 Score=64.12 Aligned_cols=67 Identities=21% Similarity=0.193 Sum_probs=51.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCccc---CHHHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLV---SFDEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl 261 (600)
+.|+++.|+|+|.+|.+.++.|+..|++|+++|.... ...+++.|+... ...+.+.++|+|+..-..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 4689999999999999999999999999999996542 223455677543 234567889988876543
No 304
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.79 E-value=0.025 Score=61.28 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=62.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC-CEEEEECCCC-ChhHHHHcC---Ccc--------cCHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYA-PADRARAIG---VDL--------VSFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~-~~~~a~~~g---~~~--------~~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|.|||.|.||+.+|..|...| .+|+..|+.. ...++.... ++. ..+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 68999999999999999998887 9999999986 334443332 221 146789999999999999542
Q ss_pred ccccccHhHh-ccCCCceEEEEccCCc
Q 007512 265 TSKVLNDETF-GKMKKGVRIINVARGG 290 (600)
Q Consensus 265 t~~li~~~~l-~~mk~gailvNvarg~ 290 (600)
+...+ +.++-|.-.+|++-..
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEcccCC
Confidence 22333 3467777777776433
No 305
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.78 E-value=0.02 Score=56.74 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=34.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999897 89999876
No 306
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=95.74 E-value=0.088 Score=55.63 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=48.1
Q ss_pred ccCCEEEEEec---ChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCcc-cCHHHHhccCCEEEE
Q 007512 195 LVGKTLAVLGF---GKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVDL-VSFDEAIATADFISL 257 (600)
Q Consensus 195 l~gktiGIIGl---G~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l 257 (600)
+.|.+|+++|= +++..++...+..+|+ +|....|.. .++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 999888754 111111112333 478999999999987
No 307
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.72 E-value=0.022 Score=58.56 Aligned_cols=112 Identities=20% Similarity=0.218 Sum_probs=67.0
Q ss_pred EEEEec-ChhHHHHHHHhhcCC----CEEEEECCCCChhHH--H-------Hc-CC--c-ccCHHHHhccCCEEEEecCC
Q 007512 200 LAVLGF-GKVGSEVARRAKGLG----MHVIAHDPYAPADRA--R-------AI-GV--D-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 200 iGIIGl-G~IG~~vA~~l~~~g----~~V~~~d~~~~~~~a--~-------~~-g~--~-~~~l~ell~~aDvV~l~~Pl 261 (600)
|+|||. |.+|..+|..+...| .++..||.......+ . .. .. . ..++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999987666 699999976522111 1 11 11 1 12567899999999996632
Q ss_pred Cc---ccc--------cccc--HhHhccCCCceEEEEccCCccccHH--HHHHh--HhcCCceEEE-Eec
Q 007512 262 TP---ATS--------KVLN--DETFGKMKKGVRIINVARGGVIDEE--ALVRA--LDSGRVAQAA-LDV 313 (600)
Q Consensus 262 ~~---~t~--------~li~--~~~l~~mk~gailvNvarg~ivde~--aL~~a--L~~g~i~ga~-lDv 313 (600)
.. .++ .++. .+.+.+..|+++++|++ ..+|.- .+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 11 011 1110 01233345899999994 444532 33333 3445666766 654
No 308
>PLN02342 ornithine carbamoyltransferase
Probab=95.72 E-value=0.19 Score=53.99 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=82.3
Q ss_pred hhHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHH
Q 007512 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARR 215 (600)
Q Consensus 137 ~~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~ 215 (600)
.+.+..-+|+|+|+-+...-++ .+++=++.+.++ .| .+.|+||++||= .++-.+++..
T Consensus 155 ~~la~~~~vPVINA~~~~~HPt--QaLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~ 213 (348)
T PLN02342 155 LDLAEYSSVPVINGLTDYNHPC--QIMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLL 213 (348)
T ss_pred HHHHHhCCCCEEECCCCCCChH--HHHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHH
Confidence 3455667899999965443332 233333333321 12 477999999997 4688888888
Q ss_pred hhcCCCEEEEECCCC--C-hh---HHHHcCC---c-ccCHHHHhccCCEEEEec----CCCcc--------ccccccHhH
Q 007512 216 AKGLGMHVIAHDPYA--P-AD---RARAIGV---D-LVSFDEAIATADFISLHM----PLTPA--------TSKVLNDET 273 (600)
Q Consensus 216 l~~~g~~V~~~d~~~--~-~~---~a~~~g~---~-~~~l~ell~~aDvV~l~~----Pl~~~--------t~~li~~~~ 273 (600)
+..+|++|....|.. . .+ .+.+.|. . ..++++.++.||+|..-. -..++ ....++++.
T Consensus 214 ~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~el 293 (348)
T PLN02342 214 AAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEAL 293 (348)
T ss_pred HHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHH
Confidence 889999999887754 2 11 2333442 2 247899999999998753 11110 124456677
Q ss_pred hccCCCceEEEEcc
Q 007512 274 FGKMKKGVRIINVA 287 (600)
Q Consensus 274 l~~mk~gailvNva 287 (600)
++.+|++++|.-|.
T Consensus 294 l~~ak~~aivMHpL 307 (348)
T PLN02342 294 MKLAGPQAYFMHCL 307 (348)
T ss_pred HhccCCCcEEeCCC
Confidence 77777777777664
No 309
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.66 E-value=0.037 Score=46.18 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=45.2
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC-CCcEEEEEEeCCCC-cH---HHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP-RKHAVMAIGVDEQP-RK---ETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~-g~~al~~i~~D~~~-~~---~~l~~l~~~~~v~~v~~i 598 (600)
.+.+..+|+||.++.+..++++++|||..+....... .......++++... .+ ++++.|+.. ..+++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~l 76 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKVL 76 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEEe
Confidence 4566778999999999999999999999997543322 22245556666542 22 455555542 3455543
No 310
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.025 Score=60.29 Aligned_cols=61 Identities=36% Similarity=0.445 Sum_probs=47.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHH-HcC-C--cc---cCHHHHhccCCEEEE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR-AIG-V--DL---VSFDEAIATADFISL 257 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~-~~g-~--~~---~~l~ell~~aDvV~l 257 (600)
++||||||-|-.|+.++..++.+|++|++.||......+. ... + .+ ..+.++.+.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999987322211 111 1 11 247899999999976
No 311
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.64 E-value=0.029 Score=61.66 Aligned_cols=71 Identities=23% Similarity=0.193 Sum_probs=54.8
Q ss_pred ceeccCCEEEEEec----------ChhHHHHHHHhhcCC-CEEEEECCCCChhHH-HHcCCcccCHHHHhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGF----------GKVGSEVARRAKGLG-MHVIAHDPYAPADRA-RAIGVDLVSFDEAIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGl----------G~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~ 259 (600)
+..+.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||+|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 55688999999998 456778999999985 999999998643211 111233468899999999999999
Q ss_pred CCC
Q 007512 260 PLT 262 (600)
Q Consensus 260 Pl~ 262 (600)
+-.
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 844
No 312
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=95.63 E-value=0.035 Score=58.24 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=59.4
Q ss_pred CCEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc-----cCCEEEEecCCCcc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP---ADRARAIGVDL--VSFDEAIA-----TADFISLHMPLTPA 264 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aDvV~l~~Pl~~~ 264 (600)
..++||||.|.||...+..+... ++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|...
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~- 82 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGA- 82 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHH-
Confidence 35899999999999977777644 677765 566542 24577788864 47888884 5899999998332
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
. -+......+.|+.++|-.
T Consensus 83 -H---~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 83 -H---VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred -H---HHHHHHHHHcCCeEEECC
Confidence 1 111222357788888876
No 313
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=95.63 E-value=0.15 Score=56.13 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred hHHHhCCceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC---hhHHHHH
Q 007512 138 AAATEFGCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG---KVGSEVA 213 (600)
Q Consensus 138 ~aa~~~GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG---~IG~~vA 213 (600)
+.+...+|+|+|+- |...-++ .+++=++.+..++ |. .|..+.|+||++||-+ ++..+++
T Consensus 198 e~A~~s~vPVINAgdg~~~HPt--QaLaDl~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~Sl~ 260 (429)
T PRK11891 198 EFARATNLPVINGGDGPGEHPS--QALLDLYTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVHSLV 260 (429)
T ss_pred HHHHhCCCCEEECCCCCCCCcH--HHHHHHHHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHHHHH
Confidence 45566789999987 4443332 2222233333211 11 1224789999999994 8999999
Q ss_pred HHhhcC-CCEEEEECCCC---Chh---HHHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 214 RRAKGL-GMHVIAHDPYA---PAD---RARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 214 ~~l~~~-g~~V~~~d~~~---~~~---~a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
..+..+ ||+|....|.. +.+ .+.+.|.. ..++++.+++||+|....
T Consensus 261 ~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 261 KLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 998876 99999887754 111 22333543 248999999999998843
No 314
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=95.61 E-value=0.19 Score=53.25 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=66.7
Q ss_pred HHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccce-eccCCEEEEEec-ChhHHHHHHHhh
Q 007512 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGV-SLVGKTLAVLGF-GKVGSEVARRAK 217 (600)
Q Consensus 140 a~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~-~l~gktiGIIGl-G~IG~~vA~~l~ 217 (600)
+....|+|+|+-+...-++ .+++=++.+.+ ..|. .+.|++|++||- +++..+++..+.
T Consensus 115 a~~~~vPVINag~~~~HPt--QaL~Dl~Ti~e------------------~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~ 174 (311)
T PRK14804 115 KNGSQVPVINGCDNMFHPC--QSLADIMTIAL------------------DSPEIPLNQKQLTYIGVHNNVVNSLIGITA 174 (311)
T ss_pred HHHCCCCEEECCCCCCChH--HHHHHHHHHHH------------------HhCCCCCCCCEEEEECCCCcHHHHHHHHHH
Confidence 3446789999876543332 22222332322 1233 478999999998 799999999999
Q ss_pred cCCCEEEEECCCCCh--------hHHHHcC-Cc-ccCHHHHhccCCEEEEec
Q 007512 218 GLGMHVIAHDPYAPA--------DRARAIG-VD-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 218 ~~g~~V~~~d~~~~~--------~~a~~~g-~~-~~~l~ell~~aDvV~l~~ 259 (600)
.+|++|....|.... +.+.+.| +. ..++++.++.||+|..-+
T Consensus 175 ~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 175 ALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred HcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 999999999885521 1122233 23 248999999999998843
No 315
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.018 Score=57.99 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=31.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
+++.|||+|..|+++|+.|...|++|+..|.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 579999999999999999999999999999876
No 316
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=95.58 E-value=0.015 Score=60.50 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=43.3
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
.+.+.-+|+||+|+.|++.|+++|+||.+++-.....++.=.|++++|-+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~ 51 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE 51 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC
Confidence 46677899999999999999999999999999877667787888888844
No 317
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.58 E-value=0.14 Score=54.61 Aligned_cols=94 Identities=22% Similarity=0.268 Sum_probs=63.7
Q ss_pred eccCCEEEEEecC--hhHHHHHHHhhcCCCEEEEECCCC--Chh--------HHHHcCCc---ccCHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFG--KVGSEVARRAKGLGMHVIAHDPYA--PAD--------RARAIGVD---LVSFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG--~IG~~vA~~l~~~g~~V~~~d~~~--~~~--------~a~~~g~~---~~~l~ell~~aDvV~l~ 258 (600)
.+.|+||++||-+ ++..+++..+..+|++|....|.. ..+ .++..|.. ..++++++++||+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3689999999997 789999999999999999887754 211 12334543 24799999999999884
Q ss_pred cCC--Ccc----------ccccccHhHhc-cCCCceEEEEcc
Q 007512 259 MPL--TPA----------TSKVLNDETFG-KMKKGVRIINVA 287 (600)
Q Consensus 259 ~Pl--~~~----------t~~li~~~~l~-~mk~gailvNva 287 (600)
+=. ..+ ...-++++.++ .+|++++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 310 000 12234556666 366777766664
No 318
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.54 E-value=0.026 Score=57.99 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=41.2
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCChh-HHHHcCCc-ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPAD-RARAIGVD-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~~-~a~~~g~~-~~~l~ell~~aDvV~l~~P 260 (600)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+..... .....++. ..+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998864 788776 77664211 11222332 2356666666676665554
No 319
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.54 E-value=0.022 Score=59.53 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=41.9
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
.+.+.+.-+|+||+|+.|++.|+++|+||.+++-......+.-+|.++++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 34677778999999999999999999999999987545566777887766
No 320
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=95.52 E-value=0.25 Score=53.28 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=48.0
Q ss_pred eccCCEEEEEecC--------hhHHHHHHHhhcCCCEEEEECCCC---Chh---H----HHHcCCc---ccCHHHHhccC
Q 007512 194 SLVGKTLAVLGFG--------KVGSEVARRAKGLGMHVIAHDPYA---PAD---R----ARAIGVD---LVSFDEAIATA 252 (600)
Q Consensus 194 ~l~gktiGIIGlG--------~IG~~vA~~l~~~g~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~a 252 (600)
.+.|+||+|+|.| ++..+++..+..||++|....|.. ..+ . +.+.|.. ..++++.+++|
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445788888889999999988753 221 1 2344643 24899999999
Q ss_pred CEEEEe
Q 007512 253 DFISLH 258 (600)
Q Consensus 253 DvV~l~ 258 (600)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999885
No 321
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=95.48 E-value=0.22 Score=53.13 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=79.9
Q ss_pred HhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecC--hhHHHHHHHhhc
Q 007512 141 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFG--KVGSEVARRAKG 218 (600)
Q Consensus 141 ~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG--~IG~~vA~~l~~ 218 (600)
..-+|+|+|+-+...-++ .+++=++.+.++ +.|..+.|.+|++||-+ ++..+++..+..
T Consensus 119 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~-----------------~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~ 179 (334)
T PRK12562 119 EYAGVPVWNGLTNEFHPT--QLLADLLTMQEH-----------------LPGKAFNEMTLVYAGDARNNMGNSMLEAAAL 179 (334)
T ss_pred HhCCCCEEECCCCCCChH--HHHHHHHHHHHH-----------------hCCCCcCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334689999866443333 233333333321 11124789999999976 789999999999
Q ss_pred CCCEEEEECCCC--Chh----H----HHHcCCc---ccCHHHHhccCCEEEEecC----CC----cc-----ccccccHh
Q 007512 219 LGMHVIAHDPYA--PAD----R----ARAIGVD---LVSFDEAIATADFISLHMP----LT----PA-----TSKVLNDE 272 (600)
Q Consensus 219 ~g~~V~~~d~~~--~~~----~----a~~~g~~---~~~l~ell~~aDvV~l~~P----l~----~~-----t~~li~~~ 272 (600)
+|++|....|.. +.+ . +...|.. ..++++.++.||+|..-.= .. ++ -..-++.+
T Consensus 180 ~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~e 259 (334)
T PRK12562 180 TGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSK 259 (334)
T ss_pred cCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHH
Confidence 999999887754 211 1 2233543 2489999999999988531 00 00 12335666
Q ss_pred HhccC-CCceEEEEcc
Q 007512 273 TFGKM-KKGVRIINVA 287 (600)
Q Consensus 273 ~l~~m-k~gailvNva 287 (600)
.++.. |++++|.-|.
T Consensus 260 ll~~a~~~~~i~mHcL 275 (334)
T PRK12562 260 MMALTGNPQVKFLHCL 275 (334)
T ss_pred HHHhhcCCCCEEECCC
Confidence 67664 6777777774
No 322
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=95.43 E-value=0.056 Score=56.44 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred CEEEEEecChhHHHHHHHhhcC-CCEEEE-ECCCCC---hhHHHHcCCcc--cCHHHHhc--cCCEEEEecCCCcccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL-GMHVIA-HDPYAP---ADRARAIGVDL--VSFDEAIA--TADFISLHMPLTPATSKV 268 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~-g~~V~~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aDvV~l~~Pl~~~t~~l 268 (600)
.++||||.|.||+..+..+... ++++.+ +|++.. ...+++.|+.. .+.++++. +.|+|++++|... .
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~--H-- 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKA--H-- 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHH--H--
Confidence 3799999999999887776644 677765 566553 24577788753 36888885 5889999999332 1
Q ss_pred ccHhHhccCCCceEEEEcc
Q 007512 269 LNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 269 i~~~~l~~mk~gailvNva 287 (600)
-+.....++.|..+++-.
T Consensus 78 -~e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 78 -ARHARLLAELGKIVIDLT 95 (285)
T ss_pred -HHHHHHHHHcCCEEEECC
Confidence 111223356677776654
No 323
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=95.41 E-value=0.073 Score=58.77 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=64.5
Q ss_pred ceeccCCEEEEEec----------ChhHHHHHHHhhcCCCEEEEECCCCChhHH-HHcCCcccCHHH-HhccCCEEEEec
Q 007512 192 GVSLVGKTLAVLGF----------GKVGSEVARRAKGLGMHVIAHDPYAPADRA-RAIGVDLVSFDE-AIATADFISLHM 259 (600)
Q Consensus 192 g~~l~gktiGIIGl----------G~IG~~vA~~l~~~g~~V~~~d~~~~~~~a-~~~g~~~~~l~e-ll~~aDvV~l~~ 259 (600)
+..+.|++|+|+|+ ..=+..+++.|+..|.+|.+|||+...+.. ...+... +++ .+..||+|++++
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~--~~~~~~~~ad~vvi~t 386 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIP--VSEVKSSHYDAIIVAV 386 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCccc--chhhhhcCCCEEEEcc
Confidence 45689999999999 456789999999999999999998643332 2233321 222 467899999999
Q ss_pred CCCccccccccHhHhc-cCCCceEEEEccCCcc
Q 007512 260 PLTPATSKVLNDETFG-KMKKGVRIINVARGGV 291 (600)
Q Consensus 260 Pl~~~t~~li~~~~l~-~mk~gailvNvarg~i 291 (600)
.-. +-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 387 ~h~-~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 387 GHQ-QFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred CCH-Hhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 843 3332 3434443 45545688884 5544
No 324
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.40 E-value=0.053 Score=56.49 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=49.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC----Cccc----CHHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG----VDLV----SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aDvV~l~~Pl~ 262 (600)
.+.|+++.|||.|-.|++++..|...|+ +|..+++.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 79999886522 1222221 1111 2335567899999999864
No 325
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.35 E-value=0.035 Score=61.70 Aligned_cols=64 Identities=30% Similarity=0.393 Sum_probs=47.8
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHHcCCcccCH-HHHhccCCEEEE
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIGVDLVSF-DEAIATADFISL 257 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~~g~~~~~l-~ell~~aDvV~l 257 (600)
++.|++|.|+|+|.+|.++|+.|+..|.+|.++|.... .......|+..... .+-+.++|+|+.
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 36789999999999999999999999999999997643 22233456654322 233578998876
No 326
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.35 E-value=0.032 Score=55.67 Aligned_cols=90 Identities=19% Similarity=0.177 Sum_probs=67.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH---HHHcCCccc----CHHHHhccCCEEEEecCCCcc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR---ARAIGVDLV----SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~---a~~~g~~~~----~l~ell~~aDvV~l~~Pl~~~ 264 (600)
..+|.||++.|||-|.+|..=++.+...|.+|+++.|....+. ..+.++.+. +.+ .+..+++|+.+++..+
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCHH-
Confidence 4589999999999999999999999999999999998873332 122222221 233 3445999999988444
Q ss_pred ccccccHhHhccCCCceEEEEcc
Q 007512 265 TSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNva 287 (600)
+|++.+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 6777777788878899974
No 327
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.32 E-value=0.07 Score=54.53 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=72.6
Q ss_pred HHHHhchHHHHHHHHcCccccccccceeccCCEEEEEec-ChhHHHHHHHhhcCCCEEEEECCCC-Ch------hHHHHc
Q 007512 167 AAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF-GKVGSEVARRAKGLGMHVIAHDPYA-PA------DRARAI 238 (600)
Q Consensus 167 l~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~-~~------~~a~~~ 238 (600)
.+.+|++.++.+ ..|.+|...|++|+|+ |.||..+|+.+.+.+......-+.. .. ..-.++
T Consensus 148 yaa~r~Vl~~~~-----------~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFA-----------QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHH-----------HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 345677766543 2589999999999996 9999999999998766544332211 11 111222
Q ss_pred CCc-ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccccHH
Q 007512 239 GVD-LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295 (600)
Q Consensus 239 g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivde~ 295 (600)
|-. ..+++..+.+.|+++-..... +-..|+.. .+||||+++|-++..=+|+.
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechh---hccCCeEEEcCCcCcccccc
Confidence 332 347777666767666554422 23345544 36999999999987765543
No 328
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.28 E-value=0.67 Score=50.45 Aligned_cols=199 Identities=18% Similarity=0.160 Sum_probs=122.3
Q ss_pred hCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC
Q 007512 142 EFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM 221 (600)
Q Consensus 142 ~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~ 221 (600)
+..|.|.|.-- ..+|--+++-++..+| ..|..|...+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 45688888743 3345567777777776 46889999999999999999999999999987
Q ss_pred ---EEEEECCCC--ChhH------------HHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE
Q 007512 222 ---HVIAHDPYA--PADR------------ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII 284 (600)
Q Consensus 222 ---~V~~~d~~~--~~~~------------a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv 284 (600)
+|+.+|+.- ...+ +.+..-.+.. ++.+..+|+++=+-- .+.+.++.++.|.++++|.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVSG-----VGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcCC-----CCCcCHHHHHHhccCCEEe
Confidence 688888652 1100 1000001121 557889999876532 3889999999999999999
Q ss_pred EccCCccc-cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHH
Q 007512 285 NVARGGVI-DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEA-----QEGVAIEIAEAVVG 358 (600)
Q Consensus 285 Nvarg~iv-de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea-----~~~~~~~~~~~l~~ 358 (600)
=.+--... ..++..++=+...|.+.|. | +.|- +.-|+++-|.++--...+ -++|-..+++.|.+
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaivaTGr------s---d~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~ 367 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVATGR------S---DYPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIAD 367 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEEeCC------C---CCcc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHh
Confidence 88864432 2333333222224444322 1 1121 567899999886432222 13444555666666
Q ss_pred HHcCCCCCccccCCCCChh
Q 007512 359 ALKGELAATAVNAPMVPAE 377 (600)
Q Consensus 359 ~l~g~~~~~~vn~~~i~~~ 377 (600)
+.+.......+-|+..+..
T Consensus 368 ~~~~~~~~~~iiP~~~d~r 386 (432)
T COG0281 368 LAREEVLEEYIIPPPFDPR 386 (432)
T ss_pred hccccCCcCCCCCCCCchh
Confidence 6543332233333333333
No 329
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.25 E-value=0.074 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=44.9
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC----CCC-cHHHHHHHhc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD----EQP-RKETLKKIGD 588 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D----~~~-~~~~l~~l~~ 588 (600)
..+.+..+|+||.+..++++|+++|+||...++... .++.++-.+.+. .++ +++.+++|++
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~ 67 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIRE 67 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHH
Confidence 356788899999999999999999999999998754 455666666552 222 4555666543
No 330
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.24 E-value=0.096 Score=56.80 Aligned_cols=95 Identities=24% Similarity=0.384 Sum_probs=67.2
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC---------h-----------hHHHHcCCcccCHHHHhc-
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP---------A-----------DRARAIGVDLVSFDEAIA- 250 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 250 (600)
+..|.|+||.|=|+|++|+..|+.+...|.+|+++|.... . ......|.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4459999999999999999999999988999999764432 0 011112334444456554
Q ss_pred cCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc
Q 007512 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292 (600)
Q Consensus 251 ~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv 292 (600)
+||+.+=|. +.+.|+.+...++|-. +|+-.+-+++-
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t 317 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTT 317 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCC
Confidence 688886665 4566888877777765 77777777764
No 331
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.21 E-value=0.53 Score=48.92 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcC----CC-------EEEEE
Q 007512 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL----GM-------HVIAH 226 (600)
Q Consensus 158 vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~----g~-------~V~~~ 226 (600)
+|--+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk------------------~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALR------------------ITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 34456666776666 246788899999999999999999999865 76 78888
Q ss_pred CCCC-------Ch-----hHHHHcC-CcccCHHHHhc--cCCEEEEecCCCccccccccHhHhccCC---CceEEEEccC
Q 007512 227 DPYA-------PA-----DRARAIG-VDLVSFDEAIA--TADFISLHMPLTPATSKVLNDETFGKMK---KGVRIINVAR 288 (600)
Q Consensus 227 d~~~-------~~-----~~a~~~g-~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~~l~~mk---~gailvNvar 288 (600)
|.+- .. ..++... -...+|.|+++ .+|+++=+.- .-++++++.+..|. +..+|.=.+.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8652 11 1222211 02348999999 8899976431 24789999999998 8899999887
Q ss_pred Ccc---ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHH-----HHHHHHHHHHHHHHHHH
Q 007512 289 GGV---IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTME-----AQEGVAIEIAEAVVGAL 360 (600)
Q Consensus 289 g~i---vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~e-----a~~~~~~~~~~~l~~~l 360 (600)
-.. +..++.+++=+...|.+.|+-.-..+.-.....-=+.-|+++-|-++--... --++|-..+++.|.++.
T Consensus 142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~ 221 (279)
T cd05312 142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLV 221 (279)
T ss_pred cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhC
Confidence 543 2344444432233476666432222211111122235688888877632211 12445556667777665
Q ss_pred cCC
Q 007512 361 KGE 363 (600)
Q Consensus 361 ~g~ 363 (600)
...
T Consensus 222 ~~~ 224 (279)
T cd05312 222 TDE 224 (279)
T ss_pred Ccc
Confidence 443
No 332
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.20 E-value=0.021 Score=51.96 Aligned_cols=61 Identities=21% Similarity=0.387 Sum_probs=42.6
Q ss_pred EEEEEec-ChhHHHHHHHhhc-CCCEEEE-ECCCCCh----hHHH-----HcCCc-ccCHHHHhccCCEEEEec
Q 007512 199 TLAVLGF-GKVGSEVARRAKG-LGMHVIA-HDPYAPA----DRAR-----AIGVD-LVSFDEAIATADFISLHM 259 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~-~g~~V~~-~d~~~~~----~~a~-----~~g~~-~~~l~ell~~aDvV~l~~ 259 (600)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+. +... ..|+. ..++++++.++|+|+-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999997 5898765 5665421 1111 12333 247999999999998776
No 333
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.20 E-value=0.64 Score=47.65 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-----------EEEEE
Q 007512 158 AAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-----------HVIAH 226 (600)
Q Consensus 158 vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-----------~V~~~ 226 (600)
+|--+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+...++ +++.+
T Consensus 4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v 65 (254)
T cd00762 4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV 65 (254)
T ss_pred hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence 34456666776666 24678889999999999999999999986654 68888
Q ss_pred CCCC---------ChhH-----HHHcCCcccCHHHHhc--cCCEEEEecCCCccccccccHhHhccCC---CceEEEEcc
Q 007512 227 DPYA---------PADR-----ARAIGVDLVSFDEAIA--TADFISLHMPLTPATSKVLNDETFGKMK---KGVRIINVA 287 (600)
Q Consensus 227 d~~~---------~~~~-----a~~~g~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~~l~~mk---~gailvNva 287 (600)
|.+- .... .....-...+|.|+++ ..|+++=.. ..-+++.++.+..|. +..+|.=.+
T Consensus 66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 8652 1100 1111112358999999 999997643 125789999999998 889999888
Q ss_pred CCcc---ccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 007512 288 RGGV---IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEA-----QEGVAIEIAEAVVGA 359 (600)
Q Consensus 288 rg~i---vde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea-----~~~~~~~~~~~l~~~ 359 (600)
.-.. +..++.+++=+...|.+.|+-.+.++--......-+.-|+++-|-++--...+ -++|-..+++.|.++
T Consensus 142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 221 (254)
T cd00762 142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASS 221 (254)
T ss_pred CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhh
Confidence 6443 24444455433335666655433333111111222456888888776322111 134444455555555
Q ss_pred Hc
Q 007512 360 LK 361 (600)
Q Consensus 360 l~ 361 (600)
..
T Consensus 222 v~ 223 (254)
T cd00762 222 VT 223 (254)
T ss_pred CC
Confidence 43
No 334
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.19 E-value=0.048 Score=57.95 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=46.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCC-CEEEEECCCCChhHHHHc---------C----Ccc-cCHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAPADRARAI---------G----VDL-VSFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g-~~V~~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~ 259 (600)
+..++|+|||.|.+|..+|..+...| .+|..+|.......+..+ + +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 34579999999999999999988667 489999987642221111 1 121 255 5679999999977
Q ss_pred C
Q 007512 260 P 260 (600)
Q Consensus 260 P 260 (600)
-
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
No 335
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.14 E-value=0.038 Score=58.28 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=46.2
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhH--HHHcC-Cc---------ccCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADR--ARAIG-VD---------LVSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~--a~~~g-~~---------~~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.+|..+|..+...| .+|..||+...... +.++. .. ..+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999998777 58999998763221 11111 10 0133 5689999999999953
No 336
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.08 E-value=0.054 Score=59.83 Aligned_cols=70 Identities=27% Similarity=0.395 Sum_probs=51.7
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc---CHHHHhccCCEEEEecCCCc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV---SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~ 263 (600)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +.....|+... ..++....+|+|+.+.-..+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPL 80 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCC
Confidence 367999999999999999999999999999999987522 11223355432 23456678999998765433
No 337
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=95.07 E-value=0.046 Score=51.72 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=59.0
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHHhcCCCcceEEE
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKIGDVPAIEEFVF 597 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l~~~~~v~~v~~ 597 (600)
|-+...++||++..++++++++|.||.+.|..-.++|+.++..+++..- -.+.++++++..+.|.+++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i 74 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEI 74 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeee
Confidence 3455678999999999999999999999999988888899999998766 45588999999988887764
No 338
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.06 E-value=0.07 Score=56.11 Aligned_cols=87 Identities=18% Similarity=0.226 Sum_probs=56.5
Q ss_pred EEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcCC----------cc--cCHHHHhccCCEEEEecCCCccc
Q 007512 200 LAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIGV----------DL--VSFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g~----------~~--~~l~ell~~aDvV~l~~Pl~~~t 265 (600)
|+|||.|.+|..+|-.+...| .++..+|.+.....+..... .. .+-.+.+++||+|+++.... ..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p-~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAP-RK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCC-CC
Confidence 589999999999999988777 58999998764332222211 11 11136899999999998742 22
Q ss_pred cccc-------cH-------hHhccCCCceEEEEcc
Q 007512 266 SKVL-------ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li-------~~-------~~l~~mk~gailvNva 287 (600)
.++- |. ..+....|++++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2211 11 1223345788999986
No 339
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.05 E-value=0.087 Score=56.45 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=62.8
Q ss_pred CEEEEEecChhHHHHHHHhhcC----------CCEEEE-ECCCC--------ChhHH----HHcCC-c-------ccCHH
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL----------GMHVIA-HDPYA--------PADRA----RAIGV-D-------LVSFD 246 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~----------g~~V~~-~d~~~--------~~~~a----~~~g~-~-------~~~l~ 246 (600)
.+|||+|+|.||+.+++.++.. +++|.+ +|+.. +.+.+ ...+. . ..+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998743 577665 45421 22221 11221 1 13778
Q ss_pred HHh--ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 247 EAI--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 247 ell--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
+++ .+.|+|+.|+|....+...--.-....|+.|.-+|-...+.+. ..++|.++.++.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~ 143 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN 143 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc
Confidence 887 4689999999965432211112223446667666655444432 355666655554
No 340
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.05 E-value=0.046 Score=57.25 Aligned_cols=46 Identities=28% Similarity=0.546 Sum_probs=37.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHH-HHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRA-RAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a-~~~g~~ 241 (600)
-|+.+||+|+|-+|.--.+.++++||+|+++|... ..+.+ +.+|.+
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence 79999999999999988888899999999999875 34433 446654
No 341
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.05 E-value=0.043 Score=60.61 Aligned_cols=122 Identities=23% Similarity=0.359 Sum_probs=74.3
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh-----HHHHcCCccc---CHHHHhccCCEEEEecCCCcccc
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD-----RARAIGVDLV---SFDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~-----~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
..||+|.|+|+|.-|.++|+.|++.|++|.++|.+...+ .....+++.. ...+.+.++|+|+..=- -+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG-i~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG-IPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC-CCCCC
Confidence 449999999999999999999999999999999766331 1223454432 12267888999988522 22222
Q ss_pred c-----------cccHhH-hccC-CCceEEEEcc-CCccccHHHHHHhHhc--------CCceEEEEeccCCC
Q 007512 267 K-----------VLNDET-FGKM-KKGVRIINVA-RGGVIDEEALVRALDS--------GRVAQAALDVFTEE 317 (600)
Q Consensus 267 ~-----------li~~~~-l~~m-k~gailvNva-rg~ivde~aL~~aL~~--------g~i~ga~lDv~~~E 317 (600)
- ++.+-+ +... ++..+|-=+| -|+--...-+...|++ |.|+...+|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 2 222222 2222 2333444444 4776444444444444 34655888888764
No 342
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.01 E-value=0.075 Score=42.28 Aligned_cols=59 Identities=14% Similarity=0.318 Sum_probs=43.5
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC----CcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ----PRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~----~~~~~l~~l~~ 588 (600)
.+.+...|+||.++.++..|.++++||..+...... + .....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778999999999999999999999999987543 2 56556665433 34456666543
No 343
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.00 E-value=0.028 Score=56.68 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=33.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 47899999999999999999999998886 788887643
No 344
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.99 E-value=1.1 Score=52.80 Aligned_cols=141 Identities=20% Similarity=0.174 Sum_probs=98.5
Q ss_pred CCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-
Q 007512 143 FGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM- 221 (600)
Q Consensus 143 ~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~- 221 (600)
..|.|.|.-- ..+|--+++-++..+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999843 2345566777777776 24678889999999999999999999998887
Q ss_pred --EEEEECCCC--C------hhHHHH---cCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccC
Q 007512 222 --HVIAHDPYA--P------ADRARA---IGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVAR 288 (600)
Q Consensus 222 --~V~~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvar 288 (600)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +.+.++++.+..|.+.++|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888642 1 111111 111234899999999988653 2 257899999999999999999987
Q ss_pred Cccc-cHHHHHHhHhcCCceEEE
Q 007512 289 GGVI-DEEALVRALDSGRVAQAA 310 (600)
Q Consensus 289 g~iv-de~aL~~aL~~g~i~ga~ 310 (600)
.... ..++.+++ ..+.|.+.|
T Consensus 286 P~~E~~p~~a~~~-~~~~i~atG 307 (752)
T PRK07232 286 PDPEITPEEAKAV-RPDAIIATG 307 (752)
T ss_pred CCccCCHHHHHHh-cCCEEEEEC
Confidence 5543 33333332 334565554
No 345
>PRK11579 putative oxidoreductase; Provisional
Probab=94.99 E-value=0.054 Score=57.88 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=44.6
Q ss_pred CEEEEEecChhHHH-HHHHhhcC-CCEEEE-ECCCCChhHHHHc-CCc-ccCHHHHhc--cCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSE-VARRAKGL-GMHVIA-HDPYAPADRARAI-GVD-LVSFDEAIA--TADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~-vA~~l~~~-g~~V~~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 261 (600)
.++||||+|.||+. .+..++.. ++++.+ +|++... .+... +.. +.+++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 38999999999985 56666654 788876 6776422 12223 332 458999996 57999999994
No 346
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.97 E-value=0.1 Score=55.18 Aligned_cols=89 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc---------C---Ccc-cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI---------G---VDL-VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~---------g---~~~-~~l~ell~~aDvV~l~~Pl~ 262 (600)
.+|+|||.|.+|.++|-.+...| -++..||.......+..+ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 48999999999999999987554 489999986632221111 0 111 24554 89999999966432
Q ss_pred c---cccc-cc--cH-------hHhccCCCceEEEEcc
Q 007512 263 P---ATSK-VL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~---~t~~-li--~~-------~~l~~mk~gailvNva 287 (600)
. +++. ++ |. +.+....|++++++++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 2 2231 11 11 1233356789999997
No 347
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.96 E-value=0.078 Score=43.28 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=38.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD 575 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D 575 (600)
+.+++..+|+||..+.+++.|+.+++||-..++... +.|.++-.+.+-
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~ 49 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVT 49 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEe
Confidence 567888999999999999999999999999999765 445555444443
No 348
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.93 E-value=0.081 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=33.0
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA 230 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~ 230 (600)
.+.||++.|+|.|-+|++++..|...|.+ |..+++..
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999985 99998864
No 349
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.90 E-value=0.061 Score=59.81 Aligned_cols=109 Identities=19% Similarity=0.235 Sum_probs=67.6
Q ss_pred ccCCEEEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCccc----
Q 007512 195 LVGKTLAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPAT---- 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t---- 265 (600)
..++++.|+|+|..|.+ +|+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|++.--..+..
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 45789999999999999 799999999999999976532 22334566542 2234567899987754322211
Q ss_pred ------cccccHhHh-cc-CCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 266 ------SKVLNDETF-GK-MKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ------~~li~~~~l-~~-mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++.++ .. +++. .+-|-=+.|+.-...-+...|+.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 123444433 22 3322 33333346887555555566654
No 350
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.88 E-value=0.059 Score=60.27 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=49.7
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEe
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD--RARAIGVDLV---SFDEAIATADFISLH 258 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~ 258 (600)
++.++++.|+|+|..|+++|+.|+..|.+|.++|+..... ...+.|+... ...+.+.++|+|+..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 6789999999999999999999999999999999765322 1234576543 223456789998775
No 351
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.85 E-value=0.09 Score=59.66 Aligned_cols=38 Identities=32% Similarity=0.436 Sum_probs=34.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..+.+|++.|+|.|-+|++++..|...|++|+.+++..
T Consensus 375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45789999999999999999999999999999998764
No 352
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.85 E-value=0.06 Score=60.49 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=47.6
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHHc--CCccc---CHHHHhccCCEEEEe
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---DRARAI--GVDLV---SFDEAIATADFISLH 258 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~~--g~~~~---~l~ell~~aDvV~l~ 258 (600)
+.+++|.|+|+|..|.++|+.|+..|.+|.++|..... ....+. |+... ...+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56889999999999999999999999999999976522 122233 44321 123556789999986
No 353
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.83 E-value=0.071 Score=58.82 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=66.9
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-----hHHHHcCCccc---CHHHHhcc-CCEEEEecCCCcc
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-----DRARAIGVDLV---SFDEAIAT-ADFISLHMPLTPA 264 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aDvV~l~~Pl~~~ 264 (600)
++.||++.|+|.|.+|.++|+.|+..|++|.++|..... +...+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999965411 22334465432 23344554 8988775522211
Q ss_pred ----------ccccccHhHhc-cCCC-ceEEEEccCCccccHHHHHHhHhc
Q 007512 265 ----------TSKVLNDETFG-KMKK-GVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 ----------t~~li~~~~l~-~mk~-gailvNvarg~ivde~aL~~aL~~ 303 (600)
...++.+.++. .+.+ ..+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11223333332 3322 233343346887656655666654
No 354
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.82 E-value=0.061 Score=56.97 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=45.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCCChhHHHHcC----------Ccc-cCHHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYAPADRARAIG----------VDL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a~~~g----------~~~-~~l~ell~~aDvV~l~~P 260 (600)
.+++|+|||.|.+|..+|-.+...|. ++..||.+.....+..+. +.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 899999865432222111 111 122355899999999764
No 355
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.80 E-value=0.079 Score=57.12 Aligned_cols=66 Identities=36% Similarity=0.505 Sum_probs=52.1
Q ss_pred ccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHc-CCccc-CHHHHhccCCEEEEecC
Q 007512 195 LVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAI-GVDLV-SFDEAIATADFISLHMP 260 (600)
Q Consensus 195 l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~~P 260 (600)
|.||||||+||- .--..++++|+..|.+|.+|||-......... ++.+. ++++.++.||++++++.
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te 385 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE 385 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence 899999999984 34567899999999999999998644332222 24443 79999999999999875
No 356
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=94.78 E-value=0.19 Score=55.56 Aligned_cols=108 Identities=21% Similarity=0.232 Sum_probs=64.4
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEE-ECCC-------C-ChhHH------HH-------------cCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA-HDPY-------A-PADRA------RA-------------IGVDLV 243 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~-~d~~-------~-~~~~a------~~-------------~g~~~~ 243 (600)
+.++.|+|+.|=|+|++|+..|+.|..+|.+|++ .|.+ - +.+.. ++ .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5579999999999999999999999999999994 3433 2 22111 00 022223
Q ss_pred CHHHHh-ccCCEEEEecCCCccccccccHhHhccC-CCceEEEEcc-CCccccHHHHHHhHhcCCc
Q 007512 244 SFDEAI-ATADFISLHMPLTPATSKVLNDETFGKM-KKGVRIINVA-RGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 244 ~l~ell-~~aDvV~l~~Pl~~~t~~li~~~~l~~m-k~gailvNva-rg~ivde~aL~~aL~~g~i 306 (600)
+-++++ -.||+.+-|. +.+.|+.+....+ +.+|.+|--+ -+++ ..++. +.|.+..|
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~eA~-~~L~~~GI 370 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIEAT-HLFKKNGV 370 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHHHH-HHHHHCCc
Confidence 333333 3578777665 3555776666544 4455555544 4444 33332 34444433
No 357
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.78 E-value=0.042 Score=60.59 Aligned_cols=66 Identities=21% Similarity=0.246 Sum_probs=49.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-cCCcc--------cCHHHH-hccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-IGVDL--------VSFDEA-IATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-~g~~~--------~~l~el-l~~aDvV~l~~Pl~~ 263 (600)
+++.|+|+|.+|+.+|+.|...|.+|+++|++.. .+.+.+ .++.. ..++++ +.++|.|+++++...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 4799999999999999999999999999998763 333333 44422 134555 788999999998543
No 358
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.74 E-value=0.062 Score=47.58 Aligned_cols=83 Identities=23% Similarity=0.443 Sum_probs=55.6
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCccccccc
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~~t~~li 269 (600)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+... + |++ -+.+||.|+++++....+ +.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n--~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEEN--LL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHH--HH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHH--HH
Confidence 5699999999999999999777999999876 3456667776432 2 222 367899999999844322 22
Q ss_pred cHhHhccCCCceEEE
Q 007512 270 NDETFGKMKKGVRII 284 (600)
Q Consensus 270 ~~~~l~~mk~gailv 284 (600)
-...+..+-+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 233344445555554
No 359
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.74 E-value=0.061 Score=58.18 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=45.2
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcC----Cccc---CHHHHhccCCEEEE
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG----VDLV---SFDEAIATADFISL 257 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g----~~~~---~l~ell~~aDvV~l 257 (600)
.++|||||-|..|+.++..++.+|++|+++|++.......-.. ..+. .+.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 4799999999999999999999999999999876322111111 1122 36678889999864
No 360
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=94.71 E-value=0.76 Score=49.17 Aligned_cols=99 Identities=24% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceec-cCCEEEEEecC-------hhHH
Q 007512 139 AATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSL-VGKTLAVLGFG-------KVGS 210 (600)
Q Consensus 139 aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l-~gktiGIIGlG-------~IG~ 210 (600)
.++.-+|+|+|+... .-++ .+++=++.+.++ .| .+ .|++|+|+|.| ++..
T Consensus 132 ~a~~s~vPVINa~~~-~HPt--QaLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~~ 189 (335)
T PRK04523 132 FAKYSTVPVINMETI-THPC--QELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVAN 189 (335)
T ss_pred HHHhCCCCEEECCCC-CChH--HHHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHHH
Confidence 344567999999654 3332 233333333331 12 25 68999776643 7888
Q ss_pred HHHHHhhcCCCEEEEECC-C---CChhH-------HHHcCCc---ccCHHHHhccCCEEEEec
Q 007512 211 EVARRAKGLGMHVIAHDP-Y---APADR-------ARAIGVD---LVSFDEAIATADFISLHM 259 (600)
Q Consensus 211 ~vA~~l~~~g~~V~~~d~-~---~~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~ 259 (600)
+++..+..+|++|....| . .+.+. +...|.. ..++++.+++||+|..-.
T Consensus 190 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 190 SALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS 252 (335)
T ss_pred HHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence 999999999999999988 3 22221 2334532 247999999999998743
No 361
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.63 E-value=0.086 Score=38.40 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=41.8
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC-CcHHHHHHH
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ-PRKETLKKI 586 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~-~~~~~l~~l 586 (600)
.+..+|+||.+..+.+.|+++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 355678999999999999999999999998765444455566666665 334455444
No 362
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.62 E-value=0.11 Score=42.70 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=43.3
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC-----CC-cHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE-----QP-RKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~-----~~-~~~~l~~l~~ 588 (600)
+=+.-+|+||.++.|+..|.++|+||..-++... ++.++..+.+.+ +. +++.+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3355789999999999999999999999999854 777766666532 12 4455666543
No 363
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=94.60 E-value=0.045 Score=55.68 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=48.5
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCCCc
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPR 579 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~~~ 579 (600)
+...|.+..+|+||++++|++.|.++|.||..-+-.....++.=+|+++++..-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4578889999999999999999999999999988886666888899999887655
No 364
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.60 E-value=0.11 Score=55.11 Aligned_cols=46 Identities=30% Similarity=0.499 Sum_probs=38.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|+++.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888765 44566777764
No 365
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.58 E-value=0.054 Score=56.80 Aligned_cols=60 Identities=22% Similarity=0.349 Sum_probs=42.3
Q ss_pred EEEEecChhHHHHHHHhhcCCC-EEEEECCCCChhHHHHc---------CC----cc-cCHHHHhccCCEEEEecC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPADRARAI---------GV----DL-VSFDEAIATADFISLHMP 260 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~P 260 (600)
|+|||.|.+|..+|..+...|. +|+.+|.......+... +. .. .+. +.+++||+|++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999875554 99999987643221111 11 11 244 45899999999885
No 366
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.57 E-value=0.12 Score=41.45 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=42.6
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe----CCCCcHHHHHHHhc
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV----DEQPRKETLKKIGD 588 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~----D~~~~~~~l~~l~~ 588 (600)
.+.+...|+||.++.++..|+++++||..+++... ++..+..+.+ ..+.+.+.+++|++
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATL--GERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEec--CCEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 35677899999999999999999999999998643 3355554443 23345566666653
No 367
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=94.57 E-value=0.16 Score=51.86 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=58.1
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~m 277 (600)
-++-|+|-|.+++.+|+.++..|++|.++|++.... . ...++.++.+....| ...+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 389999999999999999999999999999875311 0 011233443322222 2233335
Q ss_pred CCceEEEEccCCccccHHHHHHhHh
Q 007512 278 KKGVRIINVARGGVIDEEALVRALD 302 (600)
Q Consensus 278 k~gailvNvarg~ivde~aL~~aL~ 302 (600)
.++..+|=+.++.-.|.+.|..+|+
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~ 184 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALR 184 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHh
Confidence 5677777777888889999988884
No 368
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.54 E-value=0.068 Score=57.31 Aligned_cols=92 Identities=17% Similarity=0.276 Sum_probs=56.4
Q ss_pred CEEEEEec-ChhHHHHHHHhhcC-CCEEEE-ECCCCChh-HHHHcC-C------cccCHHH-HhccCCEEEEecCCCccc
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGL-GMHVIA-HDPYAPAD-RARAIG-V------DLVSFDE-AIATADFISLHMPLTPAT 265 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~-g~~V~~-~d~~~~~~-~a~~~g-~------~~~~l~e-ll~~aDvV~l~~Pl~~~t 265 (600)
++|+|+|. |.+|+.+++.+..+ ++++.+ +++....+ .+...+ + .+.++++ .+.++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999977 678755 55322111 111111 1 1223332 4578999999999432 2
Q ss_pred cccccHhHhccCCCceEEEEccCCccccH
Q 007512 266 SKVLNDETFGKMKKGVRIINVARGGVIDE 294 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNvarg~ivde 294 (600)
..+. ...++.|+.+||.+..--++.
T Consensus 82 ~~~v----~~a~~aG~~VID~S~~fR~~~ 106 (343)
T PRK00436 82 MDLA----PQLLEAGVKVIDLSADFRLKD 106 (343)
T ss_pred HHHH----HHHHhCCCEEEECCcccCCCC
Confidence 2221 122367899999985444433
No 369
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.50 E-value=0.077 Score=56.78 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=34.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 46899999999999999999999999987 788888764
No 370
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.45 E-value=0.043 Score=51.18 Aligned_cols=63 Identities=24% Similarity=0.314 Sum_probs=45.1
Q ss_pred CEEEEEec-ChhHHHHHHHhh--cCCCEEEEECCCCChhHHHHcCC-----------c-ccCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLGF-GKVGSEVARRAK--GLGMHVIAHDPYAPADRARAIGV-----------D-LVSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~--~~g~~V~~~d~~~~~~~a~~~g~-----------~-~~~l~ell~~aDvV~l~~P 260 (600)
.+|+|||. |.+|+.+|-.|. .+.-++..||..........+.+ . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 48999999 999999999987 44568999998743222111111 1 1145678899999999884
No 371
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.44 E-value=0.096 Score=42.96 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=42.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecC--CCcEEEEEEeCCCCc----HHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP--RKHAVMAIGVDEQPR----KETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~--g~~al~~i~~D~~~~----~~~l~~l~~ 588 (600)
+++.-+|+||.++.|.+.++++|+||..+ .+|..+ .++....++++.... ++++++|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I-~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKI-ESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEE-EeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 45666799999999999999999999999 455433 334565677765422 256666665
No 372
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=94.41 E-value=0.6 Score=50.02 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=48.5
Q ss_pred ceeccCCEEEEEec---ChhHHHHHHHhh-cCCCEEEEECCCC---Chh---HHHHcCCc--c-cCHHHHhccCCEEEE
Q 007512 192 GVSLVGKTLAVLGF---GKVGSEVARRAK-GLGMHVIAHDPYA---PAD---RARAIGVD--L-VSFDEAIATADFISL 257 (600)
Q Consensus 192 g~~l~gktiGIIGl---G~IG~~vA~~l~-~~g~~V~~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l 257 (600)
|..+.|+||++||= +++..+.+..+. .+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt 232 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYL 232 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEE
Confidence 33578999999998 588889888766 4499998887753 222 23344543 2 489999999999988
No 373
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.37 E-value=0.022 Score=56.73 Aligned_cols=132 Identities=23% Similarity=0.206 Sum_probs=79.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------------cccC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARA-----------IGV-------------------DLVS 244 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~-~~~a~~-----------~g~-------------------~~~~ 244 (600)
.=+.|+|||.|.||+.||+.+..-|+.|..+|.+.. ..++.+ .+. ...+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998763 222211 000 0113
Q ss_pred HHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEE-EccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCC
Q 007512 245 FDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRII-NVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADS 323 (600)
Q Consensus 245 l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailv-Nvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~ 323 (600)
+.+++.++|+|+=++--+-+.+.-+-++.=..+|+.++++ |+++=. ...+..+++... ..+|++.|.+-|.-
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~---lt~ia~~~~~~s-rf~GlHFfNPvPvM--- 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLS---LTDIASATQRPS-RFAGLHFFNPVPVM--- 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeeccccee---HHHHHhhccChh-hhceeeccCCchhH---
Confidence 5567777888876654333322222222222367887764 655533 344555555432 23788888766542
Q ss_pred ccccCCcEEEcCCC
Q 007512 324 KLVQHERVTVTPHL 337 (600)
Q Consensus 324 ~L~~~~nvilTPH~ 337 (600)
.|. .||=|+..
T Consensus 163 KLv---EVir~~~T 173 (298)
T KOG2304|consen 163 KLV---EVIRTDDT 173 (298)
T ss_pred HHh---hhhcCCCC
Confidence 344 46667753
No 374
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.36 E-value=0.16 Score=53.18 Aligned_cols=70 Identities=21% Similarity=0.362 Sum_probs=48.6
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCC-hhHHH----HcC------CcccCH------HHHhccCCE
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAP-ADRAR----AIG------VDLVSF------DEAIATADF 254 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~-~~~a~----~~g------~~~~~l------~ell~~aDv 254 (600)
..+.||++.|+|.|-.+++++..+...|. +|..+++... .++++ ..+ +...++ .+.+.++|+
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45788999999999999999999988886 8999998742 22222 111 112233 234567899
Q ss_pred EEEecCCC
Q 007512 255 ISLHMPLT 262 (600)
Q Consensus 255 V~l~~Pl~ 262 (600)
|+.++|+.
T Consensus 200 vINaTp~G 207 (288)
T PRK12749 200 LTNGTKVG 207 (288)
T ss_pred EEECCCCC
Confidence 98888853
No 375
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=94.34 E-value=0.084 Score=60.86 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-----cC---HHH-HhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-----VS---FDE-AIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-----~~---l~e-ll~~aDvV~l~~Pl~~~t~ 266 (600)
...+-|+|+|++|+.+++.|+..|.++++.|.++ ..+.+++.|... .+ |++ -+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999887 345566677642 12 222 2678999999999665444
Q ss_pred ccccHhHhccCCCceEEEEccCCc
Q 007512 267 KVLNDETFGKMKKGVRIINVARGG 290 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNvarg~ 290 (600)
.++ ....++.|...++--+|..
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~~~ 501 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARARGR 501 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeCCH
Confidence 333 2234455666666555533
No 376
>PRK12862 malic enzyme; Reviewed
Probab=94.34 E-value=1.7 Score=51.58 Aligned_cols=156 Identities=19% Similarity=0.115 Sum_probs=106.8
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC--
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-- 221 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-- 221 (600)
+|.|.|.-- ..+|--+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~ 219 (763)
T PRK12862 161 KIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKR 219 (763)
T ss_pred CCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCc
Confidence 699999843 2345566777777776 24678899999999999999999999998887
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 222 -HVIAHDPYA----------PA---DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 222 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+++.+|..- .. ..++.. ...+|.|+++.+|+++=.- +-+.++++.+..|.+.++|.=.+
T Consensus 220 ~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifals 292 (763)
T PRK12862 220 ENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFALA 292 (763)
T ss_pred ccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeCC
Confidence 788888532 11 122221 2348999999999987533 24789999999999999999998
Q ss_pred CCccc-cHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCC
Q 007512 288 RGGVI-DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLG 338 (600)
Q Consensus 288 rg~iv-de~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~ 338 (600)
.-... ..++.+++ ..+.|.+.|- ...| =+.-|+++-|-++
T Consensus 293 NP~~E~~p~~a~~~-~~~~i~atGr---s~~p-------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 293 NPTPEILPEEARAV-RPDAIIATGR---SDYP-------NQVNNVLCFPYIF 333 (763)
T ss_pred CCcccCCHHHHHHh-cCCEEEEECC---cCCC-------Ccccceeeccchh
Confidence 75542 33333333 2245655541 1111 1234777777665
No 377
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=94.32 E-value=0.067 Score=61.07 Aligned_cols=71 Identities=18% Similarity=0.385 Sum_probs=52.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----C---HHH-HhccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----S---FDE-AIATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl~~~t~~ 267 (600)
..+-|+|+|++|+.+|+.|+..|.++++.|.+. ..+.+++.|+..+ + +++ -+++||.++++++...++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 468999999999999999999999999999886 3455666676422 2 221 25689989888886554433
Q ss_pred c
Q 007512 268 V 268 (600)
Q Consensus 268 l 268 (600)
+
T Consensus 498 i 498 (558)
T PRK10669 498 I 498 (558)
T ss_pred H
Confidence 3
No 378
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.28 E-value=0.077 Score=57.72 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=62.1
Q ss_pred ccCCEEEEEec-ChhHHHHHHHhhcC-CCEEEEECCCCCh-hHHHHcC-------C-cccCHHH-HhccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGF-GKVGSEVARRAKGL-GMHVIAHDPYAPA-DRARAIG-------V-DLVSFDE-AIATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGl-G~IG~~vA~~l~~~-g~~V~~~d~~~~~-~~a~~~g-------~-~~~~l~e-ll~~aDvV~l~~Pl~ 262 (600)
..-++|+|+|. |.+|+.+.+.|... ++++..+....+. +...... . ...+++. .++++|+|++|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999977 7888776543211 1101001 0 1112222 258899999999943
Q ss_pred ccccccccHhHhccCCCceEEEEccCCccccHHHHH
Q 007512 263 PATSKVLNDETFGKMKKGVRIINVARGGVIDEEALV 298 (600)
Q Consensus 263 ~~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~ 298 (600)
...+....|+.|+.+||.+..-..+.++.+
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y 145 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEY 145 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence 234444446678999999865555544443
No 379
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.20 E-value=0.12 Score=55.02 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=37.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCC---C-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY---A-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~---~-~~~~a~~~g~~ 241 (600)
.|+++.|+|.|.||...++.++..|.+|++.++. . ..+.+++.|+.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~ 221 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT 221 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE
Confidence 5889999999999999999999999999999863 2 33455666654
No 380
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.20 E-value=0.16 Score=53.32 Aligned_cols=91 Identities=25% Similarity=0.252 Sum_probs=65.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEecCCCcccc---c----
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATS---K---- 267 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~---~---- 267 (600)
.|++++|||-=.=-..++++|.+.|++|..+.-. . +.....|+... +.++++.+||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~-~-~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD-Q-LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc-c-cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 4789999999999999999999999999875311 1 11123477665 56788999999999988654321 1
Q ss_pred ---cccHhHhccCCCceEEEEccCC
Q 007512 268 ---VLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 268 ---li~~~~l~~mk~gailvNvarg 289 (600)
-++.+.++.||+++.++ +|.+
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~~ 102 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGIA 102 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-EecC
Confidence 13577899999998544 4443
No 381
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.19 E-value=0.11 Score=57.99 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=52.0
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh------hHHHHcCCccc--CHHHHhccCCEEEEecCCCc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA------DRARAIGVDLV--SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~------~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~ 263 (600)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|..... ....+.|+... .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 45678999999999999999999999999999999865411 22345576542 11124557999998874433
No 382
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=94.18 E-value=0.049 Score=56.94 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=41.7
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE 576 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~ 576 (600)
.+.+-+.-+|+||+++.|++.|+++|+||.+++..+..-++.-.|.+.++-
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 455667789999999999999999999999999988555566666666664
No 383
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.13 E-value=0.67 Score=49.29 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=101.8
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hH--HH-HcCC---cccCHHHH---hccCCEEEEecCCCccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DR--AR-AIGV---DLVSFDEA---IATADFISLHMPLTPATSK 267 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~--a~-~~g~---~~~~l~el---l~~aDvV~l~~Pl~~~t~~ 267 (600)
..||.|||+-||+.++......|+.|.+|++..+. +. +. +.|. ...+++++ ++.-..|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 36899999999999999999999999999987632 21 11 2232 23477776 4556777777654443444
Q ss_pred cccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 007512 268 VLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347 (600)
Q Consensus 268 li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~ 347 (600)
+| ++....|.+|-+|||-+...--|.+.-.+.|....|...|.-|.+.|--+...| . +-| |.+.+++..
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----S--lMp---Gg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----S--LMP---GGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----c--cCC---CCChHHHHH
Confidence 44 455667899999999988777787777777888777788999999884322222 2 223 455677766
Q ss_pred HHHHHHHHHHH
Q 007512 348 VAIEIAEAVVG 358 (600)
Q Consensus 348 ~~~~~~~~l~~ 358 (600)
+ ..+.+.|..
T Consensus 156 i-k~ifq~iaa 165 (487)
T KOG2653|consen 156 I-KDIFQKIAA 165 (487)
T ss_pred H-HHHHHHHHH
Confidence 5 445555533
No 384
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=94.11 E-value=0.78 Score=50.10 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=49.2
Q ss_pred eccCCEEEEEec-----C---hhHHHHHHHhhcCCCEEEEECCCC---Chh---H----HHHcCCc---ccCHHHHhccC
Q 007512 194 SLVGKTLAVLGF-----G---KVGSEVARRAKGLGMHVIAHDPYA---PAD---R----ARAIGVD---LVSFDEAIATA 252 (600)
Q Consensus 194 ~l~gktiGIIGl-----G---~IG~~vA~~l~~~g~~V~~~d~~~---~~~---~----a~~~g~~---~~~l~ell~~a 252 (600)
.+.|+||+|+|- | ++..+++..+..+|++|....|.. .++ . +.+.|.. ..++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999999999999988763 122 1 2334542 24899999999
Q ss_pred CEEEEe
Q 007512 253 DFISLH 258 (600)
Q Consensus 253 DvV~l~ 258 (600)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
No 385
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.07 E-value=0.049 Score=55.59 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=33.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 47999999999999999999999998885 788887653
No 386
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=94.03 E-value=0.089 Score=58.03 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=44.5
Q ss_pred CEEEEEecChhHHHHHH---Hh---hcCCCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVAR---RA---KGLGMHVIAHDPYAPADR-A--------RAIGV----D-LVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~---~l---~~~g~~V~~~d~~~~~~~-a--------~~~g~----~-~~~l~ell~~aDvV~l 257 (600)
.+|+|||.|.+|...+- .+ ...|.+|..||.+..... . ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998655 22 223679999998763211 1 11121 1 2368899999999999
Q ss_pred ecCC
Q 007512 258 HMPL 261 (600)
Q Consensus 258 ~~Pl 261 (600)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
No 387
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=94.00 E-value=0.12 Score=54.00 Aligned_cols=52 Identities=8% Similarity=0.086 Sum_probs=40.2
Q ss_pred ccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCCC
Q 007512 526 GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577 (600)
Q Consensus 526 ~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~~ 577 (600)
.+.+-+.-+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p 58 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE 58 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence 3456677899999999999999999999999998633344445566676533
No 388
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=93.98 E-value=0.077 Score=55.22 Aligned_cols=98 Identities=26% Similarity=0.397 Sum_probs=71.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc---------------cC----------H
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL---------------VS----------F 245 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~---------------~~----------l 245 (600)
+-...+.++-++|+|-+|-..+...+..|+-|..+|-.. ..++-++.|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 346777888999999999999998889999999998665 223323333211 11 3
Q ss_pred HHHhccCCEEEEec--CCCccccccccHhHhccCCCceEEEEcc--CCc
Q 007512 246 DEAIATADFISLHM--PLTPATSKVLNDETFGKMKKGVRIINVA--RGG 290 (600)
Q Consensus 246 ~ell~~aDvV~l~~--Pl~~~t~~li~~~~l~~mk~gailvNva--rg~ 290 (600)
.+..++.|+|+... |-.| --.++.++..+.||||.++||.+ +|+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlAa~~GG 286 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLAAETGG 286 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence 45678999998753 4333 45688999999999999999986 554
No 389
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.94 E-value=0.12 Score=57.52 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=65.5
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH--HHc-CCccc---CHHHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA--RAI-GVDLV---SFDEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~-g~~~~---~l~ell~~aDvV~l~~Pl~~~t 265 (600)
-.+|.||++.|||-|.++..=++.|..+|.+|.++.|..+.+.. .+. .+.+. -..+.++.+++|+.|+...+
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-- 84 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-- 84 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence 35899999999999999999888999999999999987754421 122 22221 12456788999988876433
Q ss_pred cccccHhHhccCCCceEEEEcc
Q 007512 266 SKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNva 287 (600)
+|+.....++...+++|++
T Consensus 85 ---~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ---HhHHHHHHHHHcCcEEEEC
Confidence 5666666666666777765
No 390
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.89 E-value=0.22 Score=52.47 Aligned_cols=109 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHc-CCccc------------CHHHHhccCCEEEEecCCCc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAI-GVDLV------------SFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~-g~~~~------------~l~ell~~aDvV~l~~Pl~~ 263 (600)
++|+|+|.|.||+-+|-+|...|.+|..+++.. ..+...+. |+... .-.+....+|+|++|+=..+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~ 82 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD 82 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence 579999999999999999998899999998864 33323222 33110 11123457899999985332
Q ss_pred cccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEE
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQA 309 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga 309 (600)
+...+ +.....+.+++.++-.--| +-.++.+.+.+...++.++
T Consensus 83 -~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 83 -AEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA 125 (305)
T ss_pred -HHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence 33332 2334446778877766444 3346667777766666554
No 391
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.89 E-value=0.14 Score=50.39 Aligned_cols=53 Identities=11% Similarity=0.206 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecC--CCc--EEEEEEeCCCCc
Q 007512 527 SIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP--RKH--AVMAIGVDEQPR 579 (600)
Q Consensus 527 ~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~--g~~--al~~i~~D~~~~ 579 (600)
+.+-+.-.|+||++..|+..|++++|||.+++...... .+. -.|.++++-|..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~ 152 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS 152 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC
Confidence 45567789999999999999999999999999976542 443 344555554443
No 392
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=93.82 E-value=0.19 Score=47.78 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeCC--CCcHHHHHHHhcCCCcceEE
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDE--QPRKETLKKIGDVPAIEEFV 596 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D~--~~~~~~l~~l~~~~~v~~v~ 596 (600)
..++|.+.-.|+||++.++.++++..|.||.++.++-.+..+.+-|.+-+.. ..-+.+.++|.++=++..|.
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~ 76 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVL 76 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEE
Confidence 3577878888999999999999999999999999998777777766666555 33456666666665555543
No 393
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.80 E-value=0.14 Score=54.00 Aligned_cols=64 Identities=17% Similarity=0.328 Sum_probs=48.0
Q ss_pred CEEEEEecChhHH-HHHHHhhcCC--CEEE-EECCCCC--hhHHHHcCCc--ccCHHHHhcc--CCEEEEecCC
Q 007512 198 KTLAVLGFGKVGS-EVARRAKGLG--MHVI-AHDPYAP--ADRARAIGVD--LVSFDEAIAT--ADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~-~vA~~l~~~g--~~V~-~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDvV~l~~Pl 261 (600)
.++||||+|.|++ ..+..++..+ +.+. .+|++.. ...+.+.|+. +.+++++++. .|+|++|+|.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~ 77 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPN 77 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCC
Confidence 4899999997775 4777887765 4554 4688773 3456677874 5589999986 5999999993
No 394
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.78 E-value=0.18 Score=61.24 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=46.4
Q ss_pred cCCEEEEEecChhHHHHHHHhhcC-CCE-------------EEEECCCCChhH--HHHc-CC---c--ccCHHH---Hhc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGL-GMH-------------VIAHDPYAPADR--ARAI-GV---D--LVSFDE---AIA 250 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~-g~~-------------V~~~d~~~~~~~--a~~~-g~---~--~~~l~e---ll~ 250 (600)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++..... +... ++ . ..+.++ +++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 444 888898863222 2222 42 1 224444 446
Q ss_pred cCCEEEEecCC
Q 007512 251 TADFISLHMPL 261 (600)
Q Consensus 251 ~aDvV~l~~Pl 261 (600)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999995
No 395
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.72 E-value=0.15 Score=51.34 Aligned_cols=90 Identities=12% Similarity=0.088 Sum_probs=60.6
Q ss_pred ceeccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHH--HHc-CCccc--CH-HHHhccCCEEEEecCCCccc
Q 007512 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA--RAI-GVDLV--SF-DEAIATADFISLHMPLTPAT 265 (600)
Q Consensus 192 g~~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a--~~~-g~~~~--~l-~ell~~aDvV~l~~Pl~~~t 265 (600)
-..+.|+++.|||-|.++..=++.|..+|.+|.++.|....+.. ... .+.+. ++ .+.+..+++|+.|+....
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 34677999999999999999888898999999999998754421 111 23221 11 234578888888876322
Q ss_pred cccccHhHhccCCCceEEEEc
Q 007512 266 SKVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 266 ~~li~~~~l~~mk~gailvNv 286 (600)
+|+.....++.-.+++|+
T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEE
Confidence 455555555554455664
No 396
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=93.70 E-value=0.13 Score=46.31 Aligned_cols=98 Identities=21% Similarity=0.364 Sum_probs=62.0
Q ss_pred CEEEEEe----cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCc-ccCHHHHhccCCEEEEecCCCccccccccHh
Q 007512 198 KTLAVLG----FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 198 ktiGIIG----lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+|+||| -+..|..+.+.++..|++|+..+|.... -.|.. +.+++|.=...|++++++| .+.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH-
Confidence 6899999 7899999999999999999999987621 12443 3478884478999999999 3334444433
Q ss_pred HhccCCCceEEEEccCCccccHHHHHHhHhcCCc
Q 007512 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRV 306 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i 306 (600)
+..+..+.+++..+ ..++++.+..++..+
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGI 103 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCC
Confidence 23345677888876 345556666666544
No 397
>PRK04148 hypothetical protein; Provisional
Probab=93.69 E-value=0.15 Score=47.20 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=47.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc--C----HHHHhccCCEEEEecC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV--S----FDEAIATADFISLHMP 260 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~--~----l~ell~~aDvV~l~~P 260 (600)
.++++..||+| -|.++|..|...|.+|++.|.+. ..+.+++.+...+ + --++-+.||+|--+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 46899999999 89999999999999999999887 3445666665322 1 1255677777766666
No 398
>PRK12861 malic enzyme; Reviewed
Probab=93.64 E-value=2.1 Score=50.54 Aligned_cols=120 Identities=19% Similarity=0.131 Sum_probs=91.2
Q ss_pred CceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC--
Q 007512 144 GCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-- 221 (600)
Q Consensus 144 GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-- 221 (600)
.|.|.|.-- ..+|--+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999843 2345567777777777 24678889999999999999999999998887
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 222 -HVIAHDPYA----------PA---DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 222 -~V~~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
+++.+|.+- .. ..++.. ...+|.|+++.+|+++=. . +-+.++++.+..|.+.++|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG~-S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLGL-S----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEEc-C----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888432 11 122221 335899999999988653 2 25889999999999999999998
Q ss_pred CCcc
Q 007512 288 RGGV 291 (600)
Q Consensus 288 rg~i 291 (600)
.-..
T Consensus 289 NPtp 292 (764)
T PRK12861 289 NPTP 292 (764)
T ss_pred CCCc
Confidence 7554
No 399
>PLN02602 lactate dehydrogenase
Probab=93.63 E-value=0.31 Score=52.48 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=55.9
Q ss_pred CEEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC----------Ccc---cCHHHHhccCCEEEEecCCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG----------VDL---VSFDEAIATADFISLHMPLT 262 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g----------~~~---~~l~ell~~aDvV~l~~Pl~ 262 (600)
++|+|||.|.||..+|-.+...+ -++..+|.......+..+. ... .+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 69999999999999999987555 4899999865322221111 111 133 4489999999986432
Q ss_pred c---ccc-ccc--cH-------hHhccCCCceEEEEcc
Q 007512 263 P---ATS-KVL--ND-------ETFGKMKKGVRIINVA 287 (600)
Q Consensus 263 ~---~t~-~li--~~-------~~l~~mk~gailvNva 287 (600)
. +++ .++ |. ..+....|++++++++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 223 111 11 1233346788888886
No 400
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=93.63 E-value=0.86 Score=51.50 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=47.1
Q ss_pred eccCCEEEEEec---ChhHHHHHHHhhcCC-CEEEEECCCC---Ch---hHHHHcCCc---ccCHHHHhccCCE
Q 007512 194 SLVGKTLAVLGF---GKVGSEVARRAKGLG-MHVIAHDPYA---PA---DRARAIGVD---LVSFDEAIATADF 254 (600)
Q Consensus 194 ~l~gktiGIIGl---G~IG~~vA~~l~~~g-~~V~~~d~~~---~~---~~a~~~g~~---~~~l~ell~~aDv 254 (600)
.+.|++|++||= +++..+++..+..|| ++|....|.. +. +.+++.|.. ..++++.+++||+
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~ 244 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDV 244 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence 477999999998 689999999999998 9999887743 21 233345643 2489999999995
No 401
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.62 E-value=0.15 Score=56.28 Aligned_cols=68 Identities=19% Similarity=0.216 Sum_probs=49.1
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh---HHHH--cCCccc--C-HHHHhccCCEEEEecCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD---RARA--IGVDLV--S-FDEAIATADFISLHMPLT 262 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~---~a~~--~g~~~~--~-l~ell~~aDvV~l~~Pl~ 262 (600)
+.+|++.|+|.|.+|.++|+.|...|++|.++|.....+ ...+ .|+... . -+..+..+|+|+..--..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 568999999999999999999999999999999765321 1111 365432 1 234557899998854433
No 402
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.60 E-value=0.14 Score=54.84 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=34.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|..++|.|||+|.+|..+|+.|...|. ++..+|...
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 46899999999999999999999998887 888988753
No 403
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.59 E-value=0.16 Score=56.21 Aligned_cols=107 Identities=22% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHH--cCCccc---CHHHHhccCCEEEEecCCCccc---
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA---DRARA--IGVDLV---SFDEAIATADFISLHMPLTPAT--- 265 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aDvV~l~~Pl~~~t--- 265 (600)
+-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~ 85 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL 85 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence 458999999999999999999999999999976432 11222 266442 1234567899887643222211
Q ss_pred -------cccccHhH-hcc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 266 -------SKVLNDET-FGK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 -------~~li~~~~-l~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
..++.+.+ +.. ++...+-|-=+.|+.-...-+...|+.
T Consensus 86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 11233322 222 333333333346887555555666654
No 404
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.59 E-value=0.28 Score=51.45 Aligned_cols=46 Identities=37% Similarity=0.547 Sum_probs=40.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.|++|+|||.+|.+++.-++++|. +|++.|-+. ..+.+++.|+.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999986 899999887 45778888873
No 405
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.53 E-value=0.15 Score=52.75 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=26.1
Q ss_pred CEEEEEe-cChhHHHHHHHhhc-CCCEEEE-ECC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKG-LGMHVIA-HDP 228 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~-~g~~V~~-~d~ 228 (600)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~ 35 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFER 35 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3799999 79999999999985 4898876 674
No 406
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=93.33 E-value=0.058 Score=46.80 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=44.1
Q ss_pred CEEEEEecChhHHHHHHHhh-cCCCEEE-EECCCCChhHHHHcCCccc-CHHHHhcc--CCEEEEecCCCcccccccc
Q 007512 198 KTLAVLGFGKVGSEVARRAK-GLGMHVI-AHDPYAPADRARAIGVDLV-SFDEAIAT--ADFISLHMPLTPATSKVLN 270 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~-~~g~~V~-~~d~~~~~~~a~~~g~~~~-~l~ell~~--aDvV~l~~Pl~~~t~~li~ 270 (600)
.++.|+|.|..|+.++.... ..|+++. ++|..+..--..-.|+... +++++.+. .|+-++++| .+.....+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~~ 80 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVAD 80 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHHH
Confidence 47999999999999985554 4465543 3444332111111255555 77777776 999999999 333444443
No 407
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.30 E-value=0.23 Score=51.07 Aligned_cols=45 Identities=31% Similarity=0.471 Sum_probs=36.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
.|+++.|+|.|.||...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 588999999999999999999999986 88887665 3445566665
No 408
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=93.28 E-value=0.24 Score=51.70 Aligned_cols=96 Identities=19% Similarity=0.272 Sum_probs=62.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcC---C--cccCHHHH--hccCCEEEEecCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIG---V--DLVSFDEA--IATADFISLHMPLT 262 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aDvV~l~~Pl~ 262 (600)
....|+++.|+|.|-.+++++..|+..|. +|.++++..+. +.+...+ . ....+.++ +.++|+|+.++|+.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 89999987632 2222222 1 12222222 22699999999965
Q ss_pred cccc---ccccHhHhccCCCceEEEEccCCcc
Q 007512 263 PATS---KVLNDETFGKMKKGVRIINVARGGV 291 (600)
Q Consensus 263 ~~t~---~li~~~~l~~mk~gailvNvarg~i 291 (600)
-.-. ..++ ...++++.++.|+--.+.
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~ 230 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPL 230 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEeccCCC
Confidence 3221 1222 344677778877765443
No 409
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.17 E-value=0.32 Score=50.80 Aligned_cols=69 Identities=25% Similarity=0.250 Sum_probs=48.1
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCChh--HHHHc----CC---cccC---HHHHhccCCEEEEecC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPAD--RARAI----GV---DLVS---FDEAIATADFISLHMP 260 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~~--~a~~~----g~---~~~~---l~ell~~aDvV~l~~P 260 (600)
.+.||++.|+|.|-.|++++-.|...|+ +|..+|+..... .+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 3558999999999999999999998887 788999865221 11111 11 1112 2345677899999988
Q ss_pred CC
Q 007512 261 LT 262 (600)
Q Consensus 261 l~ 262 (600)
+.
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 54
No 410
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.16 E-value=0.21 Score=55.82 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=65.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhH--HHHcCCccc---CHHHHhccCCEEEEecCCCccc--
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADR--ARAIGVDLV---SFDEAIATADFISLHMPLTPAT-- 265 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~--a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t-- 265 (600)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|.... ... ..+.+.... .-.+.+.++|+|+..--..+..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999999996531 111 111132221 1235678899997754322211
Q ss_pred --------cccccHhHh--cc-CC-----CceEEEEccCCccccHHHHHHhHhc
Q 007512 266 --------SKVLNDETF--GK-MK-----KGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 --------~~li~~~~l--~~-mk-----~gailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++-+| .. ++ ...+-|-=+.|+.-...-+...|+.
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 123444443 22 32 1233333346777555555555654
No 411
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=93.14 E-value=0.1 Score=53.05 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=33.0
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|.+++|.|+|+|-+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 46899999999999999999999998875 778888654
No 412
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.10 E-value=0.25 Score=52.33 Aligned_cols=46 Identities=28% Similarity=0.281 Sum_probs=39.0
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVD 241 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~ 241 (600)
.|.++.|.|.|.+|...++.++..|.+|++.+++. ..+.++++|+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~ 211 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA 211 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc
Confidence 37899999999999999999999999999988765 45667788874
No 413
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.09 E-value=0.19 Score=46.70 Aligned_cols=80 Identities=30% Similarity=0.467 Sum_probs=49.2
Q ss_pred EEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhccCCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKK 279 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ 279 (600)
+-|+|-|.+++.+++.++.+|++|.++|++.. .++.++-+ .+.+... +. +.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~~----~~--~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPDD----IL--EDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHHH----HH--HHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChHH----HH--hcc-CCCC
Confidence 46899999999999999999999999999842 11244443 2332111 00 112 3566
Q ss_pred ceEEEEccCCccccHHHHHHhHhcC
Q 007512 280 GVRIINVARGGVIDEEALVRALDSG 304 (600)
Q Consensus 280 gailvNvarg~ivde~aL~~aL~~g 304 (600)
+..+| +.++.-.|.+.|..+|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7888888999888888774
No 414
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=93.05 E-value=0.24 Score=56.78 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=50.2
Q ss_pred eccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhH--HHHcCC--cccC---HHHHhccCCEEEEecCCC
Q 007512 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR--ARAIGV--DLVS---FDEAIATADFISLHMPLT 262 (600)
Q Consensus 194 ~l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~--a~~~g~--~~~~---l~ell~~aDvV~l~~Pl~ 262 (600)
....|+|||||-|..|+.+++.++.+|++|+++|+...... ....-+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998763211 111111 1233 556778899998765543
No 415
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.04 E-value=0.3 Score=48.74 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=32.9
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998886 58888876
No 416
>PRK05086 malate dehydrogenase; Provisional
Probab=93.02 E-value=0.48 Score=50.16 Aligned_cols=64 Identities=23% Similarity=0.198 Sum_probs=43.9
Q ss_pred CEEEEEec-ChhHHHHHHHhh---cCCCEEEEECCCCChh----HHHHcC--C--c---ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGF-GKVGSEVARRAK---GLGMHVIAHDPYAPAD----RARAIG--V--D---LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~---~~g~~V~~~d~~~~~~----~a~~~g--~--~---~~~l~ell~~aDvV~l~~Pl 261 (600)
++|+|||. |.||+.+|..+. ..+.++..+|+....+ ...+.+ . . ..++.+.+++||+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998774 3456888898654210 111111 1 1 12556788999999999864
No 417
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.83 E-value=0.28 Score=51.80 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=52.9
Q ss_pred EEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhcc
Q 007512 199 TLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276 (600)
Q Consensus 199 tiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~ 276 (600)
+|+|+| -|-.|.++.++|..+ .+++........ +...+.+++++++|++|+|+|.. ....+.. .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~--~~-- 69 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS--LV-- 69 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH--HH--
Confidence 789997 599999999999977 577776543321 22235667888999999999943 2333321 11
Q ss_pred CCCceEEEEcc
Q 007512 277 MKKGVRIINVA 287 (600)
Q Consensus 277 mk~gailvNva 287 (600)
.+.|+.+||.+
T Consensus 70 ~~~g~~VIDlS 80 (310)
T TIGR01851 70 DNPNTCIIDAS 80 (310)
T ss_pred HhCCCEEEECC
Confidence 25688999987
No 418
>PRK10206 putative oxidoreductase; Provisional
Probab=92.74 E-value=0.24 Score=53.01 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=43.4
Q ss_pred EEEEEecChhHHH-HHHHhh-c-CCCEEEE-ECCCCCh-hHHHHcC-Ccc-cCHHHHhc--cCCEEEEecCCC
Q 007512 199 TLAVLGFGKVGSE-VARRAK-G-LGMHVIA-HDPYAPA-DRARAIG-VDL-VSFDEAIA--TADFISLHMPLT 262 (600)
Q Consensus 199 tiGIIGlG~IG~~-vA~~l~-~-~g~~V~~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aDvV~l~~Pl~ 262 (600)
++||||+|.|++. .+..+. . -++++.+ +|+.... +.+...+ +.. .++++++. +.|+|++|+|..
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 7999999998864 345443 2 3688875 7876532 2333444 333 47999995 579999999943
No 419
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=92.73 E-value=0.13 Score=46.01 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=57.4
Q ss_pred ecChhHHHHHHHhhcC----CCEEEE-ECCC--CChhH-HH-HcCCcccCHHHHhc--cCCEEEEecCCCccccccccHh
Q 007512 204 GFGKVGSEVARRAKGL----GMHVIA-HDPY--APADR-AR-AIGVDLVSFDEAIA--TADFISLHMPLTPATSKVLNDE 272 (600)
Q Consensus 204 GlG~IG~~vA~~l~~~----g~~V~~-~d~~--~~~~~-a~-~~g~~~~~l~ell~--~aDvV~l~~Pl~~~t~~li~~~ 272 (600)
|+|.||+.+++.++.. ++++.+ +|++ ..... .. .......++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999854 677766 5665 11111 11 12233458999988 9999999976332 2233
Q ss_pred HhccCCCceEEEEccCCcccc---HHHHHHhHhc
Q 007512 273 TFGKMKKGVRIINVARGGVID---EEALVRALDS 303 (600)
Q Consensus 273 ~l~~mk~gailvNvarg~ivd---e~aL~~aL~~ 303 (600)
....|+.|.-+|-++.+.+.| .+.|.++.++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 344567888888888888772 4445444443
No 420
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=92.72 E-value=1.8 Score=45.62 Aligned_cols=65 Identities=28% Similarity=0.247 Sum_probs=47.1
Q ss_pred eccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC--Chh--------HHHHcCCcc---cCHHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA--PAD--------RARAIGVDL---VSFDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~--~~~--------~a~~~g~~~---~~l~ell~~aDvV~l~~ 259 (600)
.+.|+||++||=+ ++..+.+..+..+|++|....|.. +.. .++..|... .++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 4789999999984 567888888999999999988754 211 123346542 354 5799999998833
No 421
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=92.68 E-value=0.35 Score=51.87 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred CEEEEEecChhHHHHHHHhhcC--CCEEEE-ECCCCC--hhHHHHcCCc-ccCHHHHhccCCEEEEecCC
Q 007512 198 KTLAVLGFGKVGSEVARRAKGL--GMHVIA-HDPYAP--ADRARAIGVD-LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~--g~~V~~-~d~~~~--~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl 261 (600)
.+|||||. .+|+.-++.++.. ++++.+ +|+... .+.+.+.|+. +.++++++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6799999888765 578776 687652 3456667875 46899999999999999984
No 422
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.62 E-value=0.3 Score=53.84 Aligned_cols=108 Identities=18% Similarity=0.180 Sum_probs=64.0
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh--HHHHcCCccc---CHHHHhccCCEEEEecCCCccccc--
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD--RARAIGVDLV---SFDEAIATADFISLHMPLTPATSK-- 267 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~~Pl~~~t~~-- 267 (600)
+.++++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.+..+|+|+. .|-.+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 568899999999999999999999999999999765322 1223365432 12245677896654 453332211
Q ss_pred ---------cccH-hHhcc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 268 ---------VLND-ETFGK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 268 ---------li~~-~~l~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
++.+ +.+.. ++.-.+-|-=+.|+.-...-+...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 2222 22222 222223333336777555555666654
No 423
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.58 E-value=0.27 Score=53.94 Aligned_cols=104 Identities=13% Similarity=0.143 Sum_probs=60.5
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHh--ccCCEEEEecCCCccc------cccc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAI--ATADFISLHMPLTPAT------SKVL 269 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell--~~aDvV~l~~Pl~~~t------~~li 269 (600)
+++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ .++|+|+..--..+.. +.++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLI 78 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 36899999999999999999 99999999955422222334665432 2234 4699886652222211 1223
Q ss_pred cHhHh-ccCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 270 NDETF-GKMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 270 ~~~~l-~~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.+-.+ ..+.+..+-|-=+.|+.-..+-+...|+.
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 33322 22222234343346887655555666664
No 424
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=92.58 E-value=0.24 Score=57.34 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=61.0
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCccc-----CHH----HHhccCCEEEEecCCCcccc
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLV-----SFD----EAIATADFISLHMPLTPATS 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~~-----~l~----ell~~aDvV~l~~Pl~~~t~ 266 (600)
...+-|+|+|++|+.+|+.|++.|.++++.|.++ ..+.+++.|.... +.+ .-+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999999877 3455666776422 222 23568999999998555443
Q ss_pred ccccHhHhccCCCceEEEEc
Q 007512 267 KVLNDETFGKMKKGVRIINV 286 (600)
Q Consensus 267 ~li~~~~l~~mk~gailvNv 286 (600)
.+. .....+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 332 223334556555443
No 425
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=92.50 E-value=0.21 Score=52.37 Aligned_cols=85 Identities=27% Similarity=0.357 Sum_probs=55.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-C-----------hhH----------H----HHc--CCcc--c----
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-P-----------ADR----------A----RAI--GVDL--V---- 243 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~-----------~~~----------a----~~~--g~~~--~---- 243 (600)
+|.|+|.|-+|..+|+.|...|. ++..+|... . .+. + ++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999998886 677777421 0 000 0 011 1110 0
Q ss_pred --------------------CHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 244 --------------------SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 244 --------------------~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.++++++++|+|+.++- +-+++.+++..-.. .+..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~---~~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA---KNKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCcEEEEE
Confidence 14678999999999995 66678777665443 233677765
No 426
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.46 E-value=0.18 Score=54.73 Aligned_cols=62 Identities=27% Similarity=0.356 Sum_probs=43.0
Q ss_pred EEEEecChhHHHHHHHhhcCC-C-EEEEECCCCCh-hHHHH--c--CCcc--------cCHHHHhccCCEEEEecCC
Q 007512 200 LAVLGFGKVGSEVARRAKGLG-M-HVIAHDPYAPA-DRARA--I--GVDL--------VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 200 iGIIGlG~IG~~vA~~l~~~g-~-~V~~~d~~~~~-~~a~~--~--g~~~--------~~l~ell~~aDvV~l~~Pl 261 (600)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .+.. .+|+++++++|+|+.|+|-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999998764 5 89999988633 22211 1 1211 1377899999999999974
No 427
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.43 E-value=0.32 Score=51.43 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC--EEEEECCCCChhHH--H---------HcCC--cc---cCHHHHhccCCEEEEe
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM--HVIAHDPYAPADRA--R---------AIGV--DL---VSFDEAIATADFISLH 258 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~--~V~~~d~~~~~~~a--~---------~~g~--~~---~~l~ell~~aDvV~l~ 258 (600)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+. .. .+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 9999999999986664 69999984311111 0 1111 11 133 459999999999
Q ss_pred cCC
Q 007512 259 MPL 261 (600)
Q Consensus 259 ~Pl 261 (600)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 873
No 428
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=92.39 E-value=0.29 Score=52.32 Aligned_cols=60 Identities=28% Similarity=0.417 Sum_probs=43.8
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-h-HHHHcCC--cccC---HHHHhccCCEEEEe
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-D-RARAIGV--DLVS---FDEAIATADFISLH 258 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~-~a~~~g~--~~~~---l~ell~~aDvV~l~ 258 (600)
||||||-|..|+.+++.++.+|++|+++|++... . .....-+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 5999999999999999999999999999987622 1 1111111 2223 66788899998553
No 429
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.38 E-value=0.31 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=40.0
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC---CC-CcHHHHHHHh
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD---EQ-PRKETLKKIG 587 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D---~~-~~~~~l~~l~ 587 (600)
+..+|+||..+.++..|.++|+||...++... .++.++=.+-+. .. .+++.+++|+
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~~~~~~~~~~l~ 64 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDARELLHTKKRREETY 64 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 55789999999999999999999999999753 555654444442 22 2445555554
No 430
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.36 E-value=0.34 Score=53.94 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=61.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc-CCcc--cCHHHHhccCCEEEEecCCCccc------
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI-GVDL--VSFDEAIATADFISLHMPLTPAT------ 265 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~-g~~~--~~l~ell~~aDvV~l~~Pl~~~t------ 265 (600)
.||+++|+|+|.-|.++|+.|+. |.+|+++|..... ....+. .... ..-.+.+.++|+|+..--..+..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a 83 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence 47899999999999999999995 9999999954321 111111 1111 11234567899887754222211
Q ss_pred ----cccccHhHh--ccCCCceEEEEcc-CCccccHHHHHHhHhc
Q 007512 266 ----SKVLNDETF--GKMKKGVRIINVA-RGGVIDEEALVRALDS 303 (600)
Q Consensus 266 ----~~li~~~~l--~~mk~gailvNva-rg~ivde~aL~~aL~~ 303 (600)
..++++-+| ..+++..+|-=+| .|+.-...-+...|+.
T Consensus 84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 123444333 2233222333333 6887655555666664
No 431
>PRK07877 hypothetical protein; Provisional
Probab=92.32 E-value=0.18 Score=59.01 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=63.3
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC--EEEEECCCC-Ch---h---------------HH----HHc--CCc----
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM--HVIAHDPYA-PA---D---------------RA----RAI--GVD---- 241 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~--~V~~~d~~~-~~---~---------------~a----~~~--g~~---- 241 (600)
..|++++|+|+|+| +|+.+|..|...|. ++..+|... .. . .+ .+. .++
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 46899999999999 89999999987773 777776432 10 0 01 011 111
Q ss_pred -----ccCHHHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCcccc
Q 007512 242 -----LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293 (600)
Q Consensus 242 -----~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~ivd 293 (600)
..++++++..+|+|+-|+- +-+++.++++.....=+ .+|.-.+-++.++
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 1147788999999998887 55788888877665422 2444444344444
No 432
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.32 E-value=0.2 Score=47.65 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=47.2
Q ss_pred EEEEe-cChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcc--------cCHHHHhccCCEEEEecCCCc
Q 007512 200 LAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDL--------VSFDEAIATADFISLHMPLTP 263 (600)
Q Consensus 200 iGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl~~ 263 (600)
|.|+| .|.+|+.+++.|...|.+|.+.-++...... ..+++. .++.+.++.||.|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532221 334432 135678899999999997544
No 433
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.31 E-value=0.28 Score=51.85 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=79.6
Q ss_pred CEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-------------CHHHHhccCCEEEEecCCCcc
Q 007512 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-------------SFDEAIATADFISLHMPLTPA 264 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-------------~l~ell~~aDvV~l~~Pl~~~ 264 (600)
++|.|+|.|.||+-++.+|...|..|...-+....+..++.|.... .-.+.+..+|+|++++=.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 4899999999999999999988877776655444455555564211 2235667899999987633 3
Q ss_pred ccccccHhHhccCCCceEEEEccCCccccHHHHHHhHhcCC-ceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 007512 265 TSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGR-VAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAS 340 (600)
Q Consensus 265 t~~li~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~-i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~ 340 (600)
+...+ +.....+++.+.|+-.--|- =.++.+.......+ +.|...-....+.+ ..-.......+.+.+..+..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~-g~v~~~g~g~~~ig~~~~~~ 153 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGP-GHVVHTGLGDTVIGELRGGR 153 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCC-ceEEEecCCcEEEccCCCCc
Confidence 44333 33444577776665332222 23445554444443 43332222222211 11233334566677766544
No 434
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.30 E-value=0.37 Score=52.30 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=50.7
Q ss_pred hHHHhCCceeecCCCCChHHHHHHHHHHHHHHHhchHHHHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhh
Q 007512 138 AAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAK 217 (600)
Q Consensus 138 ~aa~~~GI~V~n~p~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~ 217 (600)
.+.++.|-.+...+......... -+|++ .-+.|... ....|.+++|.|+|+|-+|+.+++.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 45566677777666655444322 22332 22334321 124689999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 007512 218 GLGM-HVIAHDPY 229 (600)
Q Consensus 218 ~~g~-~V~~~d~~ 229 (600)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 8887 78888876
No 435
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.29 E-value=0.12 Score=55.89 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHcCccccccccceeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 176 ~~~~~~~g~W~~~~~~g~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
+.++++-..|... ....|.+++|.|||+|-+|..+++.|...|. ++..+|+.
T Consensus 22 y~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 22 TARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3344443445432 2357899999999999999999999998886 88888865
No 436
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=92.27 E-value=0.91 Score=45.25 Aligned_cols=89 Identities=28% Similarity=0.341 Sum_probs=54.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCCcc-c-----CHHHH-----hccCCEEEEecCCCc
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDL-V-----SFDEA-----IATADFISLHMPLTP 263 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~~~-~-----~l~el-----l~~aDvV~l~~Pl~~ 263 (600)
.|+++.|.|.|.+|..+++.++..|.+|++.++.. ..+.+...|... . +..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 57899999999999999999999999999998765 233344444321 1 11111 134666666555211
Q ss_pred cccccccHhHhccCCCceEEEEccCC
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNvarg 289 (600)
.-...+..|+++..+++++..
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEccC
Confidence 123344556666666666543
No 437
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=92.25 E-value=0.32 Score=57.05 Aligned_cols=71 Identities=20% Similarity=0.316 Sum_probs=55.0
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCC-cHHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQP-RKETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~-~~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+.+.+. +.- =..++.+|+++++|.+|+-+
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R~ 741 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRL 741 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEec
Confidence 456778999999999999999999999999986444456666655443 332 23789999999999998753
No 438
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.24 E-value=0.6 Score=51.38 Aligned_cols=105 Identities=24% Similarity=0.277 Sum_probs=63.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh--hH----HH-HcCCccc--CHHHHhccCCEEEEecCCCcccc---
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--DR----AR-AIGVDLV--SFDEAIATADFISLHMPLTPATS--- 266 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~--~~----a~-~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~--- 266 (600)
++.|||+|.+|.++|+.|+..|++|.++|..... .. .. ..|+... .-.+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 4789999999999999999999999999975421 11 11 2476542 11455688998876543222111
Q ss_pred -------ccccHhHh-cc-CCCceEEEEccCCccccHHHHHHhHhc
Q 007512 267 -------KVLNDETF-GK-MKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 -------~li~~~~l-~~-mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++.+.++ .. ++.-.+-|-=+.|+.-...-+...|+.
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 12333322 22 333344444457887666655666665
No 439
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=92.24 E-value=0.51 Score=50.62 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=35.6
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~ 240 (600)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.+++.|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 588999999999999999999999999988765542 233345665
No 440
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.20 E-value=0.35 Score=51.51 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=24.7
Q ss_pred EEEEEecChhHHHHHHHhhcC----CCEEEEECC
Q 007512 199 TLAVLGFGKVGSEVARRAKGL----GMHVIAHDP 228 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~----g~~V~~~d~ 228 (600)
+|||+|+|+||+.+.+.+... +++|.+...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 589999999999999998754 378887654
No 441
>PRK08223 hypothetical protein; Validated
Probab=92.12 E-value=0.24 Score=51.76 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=32.8
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|++++|.|||+|-+|..+|..|...|. ++..+|...
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 46899999999999999999999998885 777777653
No 442
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=92.10 E-value=0.37 Score=55.32 Aligned_cols=127 Identities=18% Similarity=0.226 Sum_probs=81.5
Q ss_pred CceeecCC-CCChHHHHHHHHHHHHHHHhchHHHHHHHHcCcccccccc-ceeccCCEEEEEecChhHHHHHHHhhcCCC
Q 007512 144 GCLVVNAP-TANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV-GVSLVGKTLAVLGFGKVGSEVARRAKGLGM 221 (600)
Q Consensus 144 GI~V~n~p-~~~~~~vAE~~l~lll~~~R~i~~~~~~~~~g~W~~~~~~-g~~l~gktiGIIGlG~IG~~vA~~l~~~g~ 221 (600)
|-++++-. -.+....||.++-|=|-++| |.--... ...|.+.+|.|||.|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 33444432 35667788888877776665 5432212 256899999999999999999999999886
Q ss_pred -EEEEECCCC------------ChhH-----------H----HHc--CCc------c-------c-------------CH
Q 007512 222 -HVIAHDPYA------------PADR-----------A----RAI--GVD------L-------V-------------SF 245 (600)
Q Consensus 222 -~V~~~d~~~------------~~~~-----------a----~~~--g~~------~-------~-------------~l 245 (600)
++..+|... ..+. | ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 677766321 0000 0 011 010 0 1 24
Q ss_pred HHHhccCCEEEEecCCCccccccccHhHhccCCCceEEEEcc
Q 007512 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 246 ~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNva 287 (600)
.++++++|+|+.|+- +-++|.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 568899999999987 66788888765443 344566655
No 443
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=91.99 E-value=0.075 Score=45.47 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.5
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEee
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVG 560 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~ 560 (600)
+.-+|+||+++.|++.|+++|+||-+++-.
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 446899999999999999999999988653
No 444
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=91.98 E-value=0.29 Score=46.86 Aligned_cols=34 Identities=12% Similarity=0.343 Sum_probs=30.2
Q ss_pred EEecCCCCChhhHHhhhhcCCccccceEeeeecC
Q 007512 531 CRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAP 564 (600)
Q Consensus 531 v~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~ 564 (600)
+...|+||++..++.+|.++||||++|..-|...
T Consensus 97 v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a 130 (176)
T COG2716 97 VDANDRPGIVEEFTALFDGHGINIENLVSRTYPA 130 (176)
T ss_pred EEecCCccHHHHHHHHHHhcCCchhhceeeeeec
Confidence 5567999999999999999999999999977543
No 445
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.87 E-value=0.34 Score=51.48 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=46.0
Q ss_pred eccCCEEEEEec-ChhHHHHHHHhhc--CCCEEEEECCCCChhHHHHc-----CCccc---C---HHHHhccCCEEEEec
Q 007512 194 SLVGKTLAVLGF-GKVGSEVARRAKG--LGMHVIAHDPYAPADRARAI-----GVDLV---S---FDEAIATADFISLHM 259 (600)
Q Consensus 194 ~l~gktiGIIGl-G~IG~~vA~~l~~--~g~~V~~~d~~~~~~~a~~~-----g~~~~---~---l~ell~~aDvV~l~~ 259 (600)
-++.++|+|||. |.||+.+|..+.. ...++..+|.......+.++ ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356679999999 9999999999884 44689999974322111110 11111 1 257899999999877
Q ss_pred CC
Q 007512 260 PL 261 (600)
Q Consensus 260 Pl 261 (600)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 53
No 446
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.86 E-value=0.32 Score=53.63 Aligned_cols=67 Identities=16% Similarity=0.121 Sum_probs=47.2
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHc--CCcc-----cC---H-HHHhccCCEEEEecCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAI--GVDL-----VS---F-DEAIATADFISLHMPL 261 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~--g~~~-----~~---l-~ell~~aDvV~l~~Pl 261 (600)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.+... +...+. ++.. .+ | +..+.++|.|+++++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 45689999999999999999999999999999877632 223322 3321 12 2 1235678888877774
No 447
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.86 E-value=0.71 Score=49.21 Aligned_cols=105 Identities=18% Similarity=0.379 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHhhc--------CCCEEEE-ECCCC--------ChhHH---HHcC----C--cccCHHHHh-cc
Q 007512 199 TLAVLGFGKVGSEVARRAKG--------LGMHVIA-HDPYA--------PADRA---RAIG----V--DLVSFDEAI-AT 251 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~--------~g~~V~~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 251 (600)
+|+|+|+|.||+.+++.+.. ++.+|.+ +|+.. +.+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 5677665 34332 11111 1111 1 112455553 46
Q ss_pred CCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhcC
Q 007512 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDSG 304 (600)
Q Consensus 252 aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~g 304 (600)
+|+|+=|+|... +-.-.-......|+.|.-+|-...|.+. ....|.++.+++
T Consensus 82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~ 134 (326)
T PRK06392 82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN 134 (326)
T ss_pred CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence 899999988432 1100112223446777777777777765 355565555443
No 448
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.85 E-value=0.54 Score=50.46 Aligned_cols=84 Identities=27% Similarity=0.355 Sum_probs=55.6
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHH-cCCccc-CH-H--------HHh--ccCCEEEEecCCCc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARA-IGVDLV-SF-D--------EAI--ATADFISLHMPLTP 263 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~-~g~~~~-~l-~--------ell--~~aDvV~l~~Pl~~ 263 (600)
++.|+|.|.||.-.+..++.+|. +|++.|++. ..+.|++ .|.... +. + ++- ..+|+++-|+. .+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~~ 249 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-SP 249 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-CH
Confidence 99999999999999999999985 788889877 5566766 444322 11 1 222 23788888776 22
Q ss_pred cccccccHhHhccCCCceEEEEcc
Q 007512 264 ATSKVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 264 ~t~~li~~~~l~~mk~gailvNva 287 (600)
.+ -...+..++++..++.+|
T Consensus 250 ~~----~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 250 PA----LDQALEALRPGGTVVVVG 269 (350)
T ss_pred HH----HHHHHHHhcCCCEEEEEe
Confidence 11 133455567777766666
No 449
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=91.83 E-value=0.31 Score=51.58 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=51.5
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccccHhHhc
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~ 275 (600)
.+|+||| .|..|+++.+.|... .+++.......... ..+.++.++++|++|+|+|... . .+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~-s-----~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA-A-----REAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH-H-----HHHHH
Confidence 4799999 899999999999977 45666553322111 1234566788999999999432 2 22222
Q ss_pred c-CCCceEEEEcc
Q 007512 276 K-MKKGVRIINVA 287 (600)
Q Consensus 276 ~-mk~gailvNva 287 (600)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 25788999986
No 450
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.80 E-value=0.25 Score=53.19 Aligned_cols=38 Identities=32% Similarity=0.432 Sum_probs=33.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|++++|.|||+|-+|..+|+.|...|. ++..+|...
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 46899999999999999999999998886 777887653
No 451
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.76 E-value=0.38 Score=50.50 Aligned_cols=63 Identities=19% Similarity=0.223 Sum_probs=45.7
Q ss_pred CEEEEEe-cChhHHHHHHHhhcCCCEEEEECCCCCh-hHHHHcCCcc--------cCHHHHhccCCEEEEecC
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDL--------VSFDEAIATADFISLHMP 260 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~g~~V~~~d~~~~~-~~a~~~g~~~--------~~l~ell~~aDvV~l~~P 260 (600)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++. .++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4788998 6999999999999889999998876422 1112335532 135677899999876543
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.70 E-value=0.47 Score=50.43 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=36.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.++.|+|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 37899999999999999999999999999988765 3344455554
No 453
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.59 E-value=3.4 Score=43.31 Aligned_cols=93 Identities=25% Similarity=0.355 Sum_probs=66.1
Q ss_pred ccCCEEEEEecC-hhHHHHHHHhhcCCCEEEEECCCC--C-h---hH----HHHcC--Cccc-CHHHHhccCCEEEEecC
Q 007512 195 LVGKTLAVLGFG-KVGSEVARRAKGLGMHVIAHDPYA--P-A---DR----ARAIG--VDLV-SFDEAIATADFISLHMP 260 (600)
Q Consensus 195 l~gktiGIIGlG-~IG~~vA~~l~~~g~~V~~~d~~~--~-~---~~----a~~~g--~~~~-~l~ell~~aDvV~l~~P 260 (600)
+.|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +.+.| +..+ ++++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999877 688888888889999998876643 1 1 12 23334 3333 89999999999998765
Q ss_pred CC--cccc-----------ccccHhHhccCCCceEEEEcc
Q 007512 261 LT--PATS-----------KVLNDETFGKMKKGVRIINVA 287 (600)
Q Consensus 261 l~--~~t~-----------~li~~~~l~~mk~gailvNva 287 (600)
.. ++.. +-+|.+.++.-++++++.-|=
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 32 2221 445677777777778887774
No 454
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.37 E-value=0.65 Score=50.22 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=36.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCC--hhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP--ADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~--~~~a~~~g~ 240 (600)
.|+++.|.|.|.+|...++.++.+|.+|++.++... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 488999999999999999999999999999876542 234445554
No 455
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.30 E-value=0.35 Score=48.20 Aligned_cols=63 Identities=25% Similarity=0.325 Sum_probs=48.4
Q ss_pred EEEEec-ChhHHHHHHHhhcCCCEEEEECCCCCh---hHHHHcCCccc--------CHHHHhccCCEEEEecCCC
Q 007512 200 LAVLGF-GKVGSEVARRAKGLGMHVIAHDPYAPA---DRARAIGVDLV--------SFDEAIATADFISLHMPLT 262 (600)
Q Consensus 200 iGIIGl-G~IG~~vA~~l~~~g~~V~~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aDvV~l~~Pl~ 262 (600)
|.|+|. |.+|+++++.|...+++|.+.-+..+. ......|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678885 999999999999888999887665532 23355676432 4667899999999999954
No 456
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.26 E-value=0.73 Score=38.07 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEe---C-CCC-cHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV---D-EQP-RKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~---D-~~~-~~~~l~~l~~ 588 (600)
+=+...|+||.+..|++.|.++|++|..-.+. ..|+.+.=++-+ + .++ +++.+++|++
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 34668999999999999999999999998886 556665333333 3 233 4677777764
No 457
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.24 E-value=0.51 Score=39.28 Aligned_cols=58 Identities=16% Similarity=0.117 Sum_probs=42.0
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEE--EeCC-CC-cHHHHHHHh
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAI--GVDE-QP-RKETLKKIG 587 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i--~~D~-~~-~~~~l~~l~ 587 (600)
=+...|+||.+..|+..|.+.|++|.+..+.-...|+.+.=.+ ..+. ++ +++.+++|+
T Consensus 4 ev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~ 65 (75)
T cd04896 4 QIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALC 65 (75)
T ss_pred EEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHH
Confidence 3668999999999999999999999999997446666654333 3332 33 445555554
No 458
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=91.17 E-value=0.6 Score=50.14 Aligned_cols=45 Identities=33% Similarity=0.463 Sum_probs=37.1
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999998 699988765 3455566665
No 459
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.14 E-value=0.57 Score=49.30 Aligned_cols=44 Identities=36% Similarity=0.517 Sum_probs=35.9
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.+++.|+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 89999999999999999999999998 99988765 3344455554
No 460
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.11 E-value=0.24 Score=48.65 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=33.5
Q ss_pred EEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEE
Q 007512 530 LCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIG 573 (600)
Q Consensus 530 iv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~ 573 (600)
-+.-+|+||+++.|++.|+++|+||.+.+..+-...-..+|.++
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 34469999999999999999999999998875432222455554
No 461
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=91.04 E-value=2.3 Score=47.81 Aligned_cols=138 Identities=22% Similarity=0.210 Sum_probs=91.0
Q ss_pred cceeccCCEEEEEecChh-HHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCccccccc
Q 007512 191 VGVSLVGKTLAVLGFGKV-GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269 (600)
Q Consensus 191 ~g~~l~gktiGIIGlG~I-G~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li 269 (600)
.+..+.||...++|--.| |..++..|+.....|..+-... -++.+.+.+||+|+.++--. +++
T Consensus 156 a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT------------~~lae~v~~ADIvIvAiG~P----efV 219 (935)
T KOG4230|consen 156 AGVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT------------RNLAEKVSRADIVIVAIGQP----EFV 219 (935)
T ss_pred cCCccccceeEEEecccccCChHHHHHHhcCceEEEecCCC------------ccHHHHhccCCEEEEEcCCc----cee
Confidence 357889999999998765 8899999998888888775432 24788899999999998622 344
Q ss_pred cHhHhccCCCceEEEEccCCccccHHHHHHhHhcCCceEEEEeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 007512 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349 (600)
Q Consensus 270 ~~~~l~~mk~gailvNvarg~ivde~aL~~aL~~g~i~ga~lDv~~~EP~~~~~~L~~~~nvilTPH~~~~t~ea~~~~~ 349 (600)
-.+ ++|||+++||||---+-|.. -++|+- ..=||-..+ .. +-.. .+||--||.-.=+..-+-
T Consensus 220 Kgd---WiKpGavVIDvGINyvpD~~-----Kksg~k--lvGDVdfe~--Ak-----evas-~ITPVPGGVGPMTVAMLm 281 (935)
T KOG4230|consen 220 KGD---WIKPGAVVIDVGINYVPDPS-----KKSGFK--LVGDVDFES--AK-----EVAS-FITPVPGGVGPMTVAMLM 281 (935)
T ss_pred ecc---cccCCcEEEEccccccCCCC-----Ccccce--EeeecchHh--hh-----hhhh-ccccCCCCcchHHHHHHH
Confidence 443 46999999999854443321 234432 344554444 11 1122 489999988765555444
Q ss_pred HHHHHHHHHHHcC
Q 007512 350 IEIAEAVVGALKG 362 (600)
Q Consensus 350 ~~~~~~l~~~l~g 362 (600)
+.+.++-+++...
T Consensus 282 qNtveaAKR~r~e 294 (935)
T KOG4230|consen 282 QNTVEAAKRQREE 294 (935)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 462
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.01 E-value=0.32 Score=53.26 Aligned_cols=36 Identities=33% Similarity=0.635 Sum_probs=30.2
Q ss_pred CEEEEEecChhHHHHHHHhhc-CCCEEEE-ECCCCChh
Q 007512 198 KTLAVLGFGKVGSEVARRAKG-LGMHVIA-HDPYAPAD 233 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~-~g~~V~~-~d~~~~~~ 233 (600)
.+|||.|+|+||+.++|.+.. ++++|++ +||..+.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~ 123 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK 123 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence 499999999999999999874 7999988 67765443
No 463
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=90.94 E-value=1.4 Score=46.16 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=48.8
Q ss_pred ccCCEEEEEe---cChhHHHHHHHhhcCCCEEEEECCCC--Ch----hHHHHcCC--cccC-HHHHhccCCEEEE
Q 007512 195 LVGKTLAVLG---FGKVGSEVARRAKGLGMHVIAHDPYA--PA----DRARAIGV--DLVS-FDEAIATADFISL 257 (600)
Q Consensus 195 l~gktiGIIG---lG~IG~~vA~~l~~~g~~V~~~d~~~--~~----~~a~~~g~--~~~~-l~ell~~aDvV~l 257 (600)
+.|.+|+|+| .|+.-++.++.|+.||.+|..+.|.. ++ +.....|. ...+ .++.++++|++.+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 8899999999 89999999999999999999999865 21 22333332 2334 4559999999955
No 464
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=90.87 E-value=0.9 Score=47.87 Aligned_cols=45 Identities=31% Similarity=0.473 Sum_probs=36.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.++.|.|.|.+|..+++.++.+|.+|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 46799999999999999999999999999988765 3344444554
No 465
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.78 E-value=0.59 Score=45.11 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.9
Q ss_pred EEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
+|+|||+|.+|..+|+.|...|. ++..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 58999999999999999998887 588888654
No 466
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.78 E-value=0.23 Score=50.03 Aligned_cols=71 Identities=15% Similarity=0.329 Sum_probs=50.7
Q ss_pred CccEEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEEEEeC--CCCcHHHHHHHhcCCCcceE
Q 007512 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVD--EQPRKETLKKIGDVPAIEEF 595 (600)
Q Consensus 525 ~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~i~~D--~~~~~~~l~~l~~~~~v~~v 595 (600)
..|++-|...|+||+|.+|+.+|+..|.||..+.+.-.+...-.-|.|-+- +.+=+.+.++|.++=.|+.|
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 368888899999999999999999999999999998655443342333332 33445666666666555443
No 467
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=90.72 E-value=0.68 Score=49.05 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=54.8
Q ss_pred EEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHHH--cC-----Ccc-c---CHHHHhccCCEEEEecCCCc-
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRARA--IG-----VDL-V---SFDEAIATADFISLHMPLTP- 263 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~--~g-----~~~-~---~l~ell~~aDvV~l~~Pl~~- 263 (600)
+|+|||. |.||.++|-.|...+ -++..||.......+.+ .+ +.. . ++.+.++.||+|+++.-...
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 999999999987444 48999997652111111 11 111 1 23578999999999876422
Q ss_pred --cccc-cc--cHh-------HhccCCCceEEEEcc
Q 007512 264 --ATSK-VL--NDE-------TFGKMKKGVRIINVA 287 (600)
Q Consensus 264 --~t~~-li--~~~-------~l~~mk~gailvNva 287 (600)
.++. ++ |.+ .+..-.|++++++++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1111 11 111 233346888898884
No 468
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.71 E-value=0.6 Score=48.49 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=44.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCCCh--hHHHHcCCcccCHHHH-hccCCEEEEecCCC
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYAPA--DRARAIGVDLVSFDEA-IATADFISLHMPLT 262 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~~~--~~a~~~g~~~~~l~el-l~~aDvV~l~~Pl~ 262 (600)
++++.|+|.|-.+++++..|+..|+ +|..+++.... ..+...+.... +++ ...+|+|+.|+|+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc
Confidence 4689999999999999999998887 69999987632 12223332221 111 24589999998853
No 469
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.61 E-value=0.44 Score=50.73 Aligned_cols=63 Identities=14% Similarity=0.070 Sum_probs=43.5
Q ss_pred EEEEEec-ChhHHHHHHHhhcCC-------CEEEEECCCCChh--HHHHcC-----------Cc-ccCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLG-------MHVIAHDPYAPAD--RARAIG-----------VD-LVSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g-------~~V~~~d~~~~~~--~a~~~g-----------~~-~~~l~ell~~aDvV~ 256 (600)
+|+|+|. |.+|+.++..|...+ .++..+|.....+ .+.... +. ..++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987633 4899999754221 111110 11 235668899999998
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87654
No 470
>PRK07411 hypothetical protein; Validated
Probab=90.52 E-value=0.29 Score=53.40 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=33.1
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
..|...+|.|||+|-+|..+|+.|...|. ++..+|+..
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 46899999999999999999999998886 778888653
No 471
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.45 E-value=0.68 Score=49.00 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=56.1
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHH--HcC---Ccc------cCHHHHhccCCEEEEecCCC-
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRAR--AIG---VDL------VSFDEAIATADFISLHMPLT- 262 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~--~~g---~~~------~~l~ell~~aDvV~l~~Pl~- 262 (600)
++|+|||. |.+|.++|-.+...+ -++..+|.......+. +.+ ... .++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 999999999988655 4889999762111111 111 111 12357899999999987542
Q ss_pred -c-cccc-cc--cHh-------HhccCCCceEEEEccC
Q 007512 263 -P-ATSK-VL--NDE-------TFGKMKKGVRIINVAR 288 (600)
Q Consensus 263 -~-~t~~-li--~~~-------~l~~mk~gailvNvar 288 (600)
+ ++|- ++ |.+ .+..-.|++++++++-
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 2 1221 11 111 2333467889999853
No 472
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.45 E-value=0.36 Score=51.35 Aligned_cols=64 Identities=19% Similarity=0.128 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCChh--HHHHc-----------CCcc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPAD--RARAI-----------GVDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~~--~a~~~-----------g~~~-~~l~ell~~aDvV 255 (600)
++|+|||. |.||.++|-.+...|. ++..+|.....+ .+..+ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999998875443 789999743221 11111 0111 2345789999999
Q ss_pred EEecCC
Q 007512 256 SLHMPL 261 (600)
Q Consensus 256 ~l~~Pl 261 (600)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
No 473
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=90.41 E-value=0.86 Score=47.66 Aligned_cols=90 Identities=22% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCH-HHHhccCCEEEEecCCCcccc---------
Q 007512 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSF-DEAIATADFISLHMPLTPATS--------- 266 (600)
Q Consensus 197 gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l-~ell~~aDvV~l~~Pl~~~t~--------- 266 (600)
|++++|||-=.=-..+++.|...|++|..|.-....... .|+...++ ++.+.++|+|++-+|.+.+..
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999988776432110101 15544444 455999999999999665421
Q ss_pred -ccccHhHhccCCCceEEEEccCC
Q 007512 267 -KVLNDETFGKMKKGVRIINVARG 289 (600)
Q Consensus 267 -~li~~~~l~~mk~gailvNvarg 289 (600)
-.++++.++.|+++++ +-+|.+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~~ 101 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGIS 101 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEecC
Confidence 1246778888987654 444433
No 474
>PLN00106 malate dehydrogenase
Probab=90.33 E-value=0.57 Score=49.89 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCEEEEEec-ChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHc-------CCc----ccCHHHHhccCCEEEEecCC
Q 007512 197 GKTLAVLGF-GKVGSEVARRAKGLG--MHVIAHDPYAPADRARAI-------GVD----LVSFDEAIATADFISLHMPL 261 (600)
Q Consensus 197 gktiGIIGl-G~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~-------g~~----~~~l~ell~~aDvV~l~~Pl 261 (600)
.++|+|||. |.||..+|..|...+ -++..+|.......+.++ .+. ..++.+.+++||+|+++.-.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 469999999 999999999998443 489999976521111110 111 12346889999999987653
No 475
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.23 E-value=0.54 Score=49.71 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=42.9
Q ss_pred EEEEEecChhHHHHHHHhhcCC--CEEEEECCCCChhHHHHcC------------Ccc-cCHHHHhccCCEEEEecCC
Q 007512 199 TLAVLGFGKVGSEVARRAKGLG--MHVIAHDPYAPADRARAIG------------VDL-VSFDEAIATADFISLHMPL 261 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g--~~V~~~d~~~~~~~a~~~g------------~~~-~~l~ell~~aDvV~l~~Pl 261 (600)
+|+|||.|.||..+|-.+...+ -++..+|.......+..+. +.. .+--+.+++||+|+++.-.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 5899999999999999886444 3899999865332221111 111 1224778999999997653
No 476
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.20 E-value=0.63 Score=55.62 Aligned_cols=106 Identities=11% Similarity=0.213 Sum_probs=65.7
Q ss_pred CEEEEEecChhHHHH-HHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCcccc------
Q 007512 198 KTLAVLGFGKVGSEV-ARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPATS------ 266 (600)
Q Consensus 198 ktiGIIGlG~IG~~v-A~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t~------ 266 (600)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ....+.|+... .-.+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 369999999999998 99999999999999976532 22344576542 23356778999987543332211
Q ss_pred ----ccccHhHh-cc-CCC-ceEEEEccCCccccHHHHHHhHhc
Q 007512 267 ----KVLNDETF-GK-MKK-GVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 ----~li~~~~l-~~-mk~-gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++++-++ .. ++. ..+-|-=+.|+.-...-+...|+.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~ 128 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQE 128 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 22333333 22 332 233333346887555555666665
No 477
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.20 E-value=1.5 Score=46.76 Aligned_cols=96 Identities=20% Similarity=0.208 Sum_probs=57.7
Q ss_pred EEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCC--ChhHHHHc-----------CCcc-cCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYA--PADRARAI-----------GVDL-VSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~--~~~~a~~~-----------g~~~-~~l~ell~~aDvV~ 256 (600)
+|+|+|. |.||..+|..+...|. ++..+|... +...+..+ +... .+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999875432 588899765 22111111 0111 24668899999999
Q ss_pred EecCCCc---ccccc-c--cH-------hHhccC-CCceEEEEccCCccccHHH
Q 007512 257 LHMPLTP---ATSKV-L--ND-------ETFGKM-KKGVRIINVARGGVIDEEA 296 (600)
Q Consensus 257 l~~Pl~~---~t~~l-i--~~-------~~l~~m-k~gailvNvarg~ivde~a 296 (600)
+..-... +|+.- + |. ..+.+. +|+++++.++ ..+|.-.
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t 133 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA 133 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence 8765321 12211 0 11 123334 5788888874 5556444
No 478
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.18 E-value=0.69 Score=39.11 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=40.4
Q ss_pred EEEEecCCCCChhhHHhhhhcCCccccceEeeeec-CCCcEEEEEEeCC-C-CcHHHHHHHhc
Q 007512 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVA-PRKHAVMAIGVDE-Q-PRKETLKKIGD 588 (600)
Q Consensus 529 Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~-~g~~al~~i~~D~-~-~~~~~l~~l~~ 588 (600)
+.+.-+|+||.+.++.++|+. .||..+.-.|.. .....++.+++++ + --+++++.|++
T Consensus 4 l~v~ipD~PG~L~~ll~~l~~--anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIGP--RNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEecCCCCcHHHHHHHHhCC--CceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 556789999999999999994 455566665543 3334666778776 3 34477777766
No 479
>PRK15076 alpha-galactosidase; Provisional
Probab=90.17 E-value=0.96 Score=50.09 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=66.9
Q ss_pred CEEEEEecChhHHHHHH--Hh---hcC-CCEEEEECCCCChhH-H--------HHcCC----c-ccCHHHHhccCCEEEE
Q 007512 198 KTLAVLGFGKVGSEVAR--RA---KGL-GMHVIAHDPYAPADR-A--------RAIGV----D-LVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~--~l---~~~-g~~V~~~d~~~~~~~-a--------~~~g~----~-~~~l~ell~~aDvV~l 257 (600)
.+|+|||.|.+|...+- .+ .++ +.+|..||....... + ...+. . ..++.+.++.||||+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 48999999999955543 22 344 569999998752211 1 11222 1 2367899999999999
Q ss_pred ecCCCccc-c-----------ccc-----------------cH-------hHhccCCCceEEEEccCCccccHHHHHHhH
Q 007512 258 HMPLTPAT-S-----------KVL-----------------ND-------ETFGKMKKGVRIINVARGGVIDEEALVRAL 301 (600)
Q Consensus 258 ~~Pl~~~t-~-----------~li-----------------~~-------~~l~~mk~gailvNvarg~ivde~aL~~aL 301 (600)
++-..... . +++ +- +.+....|++++||.+-.-=+-..++.+ +
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~~-~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMNR-Y 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhc-C
Confidence 98764111 1 010 00 1233356899999997644333445543 4
Q ss_pred hcCCceEEE
Q 007512 302 DSGRVAQAA 310 (600)
Q Consensus 302 ~~g~i~ga~ 310 (600)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 455776654
No 480
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.15 E-value=1.1 Score=47.61 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=29.7
Q ss_pred cCCEEEEEecChhHHHHHHHhhc-C-CCEEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKG-L-GMHVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~-~-g~~V~~~d~~~ 230 (600)
.|.++.|+|.|.||...++.++. + +.+|++.|+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~ 199 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ 199 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH
Confidence 48899999999999998888875 5 46899998765
No 481
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.11 E-value=0.53 Score=50.57 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=49.4
Q ss_pred CEEEEEe-cChhHHHHHHHhhcC-CCEEEEE-CCCCChh--HHH---------------HcCCcccCHHHHhccCCEEEE
Q 007512 198 KTLAVLG-FGKVGSEVARRAKGL-GMHVIAH-DPYAPAD--RAR---------------AIGVDLVSFDEAIATADFISL 257 (600)
Q Consensus 198 ktiGIIG-lG~IG~~vA~~l~~~-g~~V~~~-d~~~~~~--~a~---------------~~g~~~~~l~ell~~aDvV~l 257 (600)
.+|+|+| .|.+|+.+.+.|..+ .+++.++ ....... ... ...+...+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 5899998 999999999999877 5688877 2211110 000 00111123443 478999999
Q ss_pred ecCCCccccccccHhHhccC-CCceEEEEcc
Q 007512 258 HMPLTPATSKVLNDETFGKM-KKGVRIINVA 287 (600)
Q Consensus 258 ~~Pl~~~t~~li~~~~l~~m-k~gailvNva 287 (600)
|+|... . .+....+ +.|+.+||.+
T Consensus 83 a~p~~~-s-----~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDV-A-----GEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhH-H-----HHHHHHHHHCCCEEEECC
Confidence 998542 2 2222222 4567677665
No 482
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.08 E-value=0.82 Score=50.65 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=63.2
Q ss_pred EEEEEecChhHHHHHHHhhcCCCEEEEECCCCChh------HHHHcCCccc---CHH-----HHhccCCEEEEecCCCcc
Q 007512 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD------RARAIGVDLV---SFD-----EAIATADFISLHMPLTPA 264 (600)
Q Consensus 199 tiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~------~a~~~g~~~~---~l~-----ell~~aDvV~l~~Pl~~~ 264 (600)
+|.|||+|..|.+.|+.|...|.+|.++|...... ...+.|+... ..+ +.+.+.|.|+......+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 68999999999999999999999999999765221 1234566431 122 467889998874433332
Q ss_pred cc----------ccccHhHh--ccCCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 265 TS----------KVLNDETF--GKMKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 265 t~----------~li~~~~l--~~mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
.. .++.+..+ ..+++. .+-|--+.|+.-...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 11 12232222 223332 33333346877555555555654
No 483
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=90.06 E-value=0.72 Score=54.04 Aligned_cols=70 Identities=9% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEEEEecCCCCChhhHHhhhhcCCccccceEeeeecCCCcEEEE--EEeCCCCc-HHHHHHHhcCCCcceEEEe
Q 007512 528 IILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMA--IGVDEQPR-KETLKKIGDVPAIEEFVFL 598 (600)
Q Consensus 528 ~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~~~g~~al~~--i~~D~~~~-~~~l~~l~~~~~v~~v~~i 598 (600)
.|.+...|++|+++.|++.+++.++||.++++. ..+++.+.+. |++.+.-. ..++.+|+.+++|.+|+-+
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~-~~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTE-EKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE-EcCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 345778999999999999999999999999974 3444555554 44444422 2789999999999998754
No 484
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=89.95 E-value=0.81 Score=49.94 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred ccCCEEEEEecC----------hhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCccc-CHHHHhccCCEEEEec
Q 007512 195 LVGKTLAVLGFG----------KVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV-SFDEAIATADFISLHM 259 (600)
Q Consensus 195 l~gktiGIIGlG----------~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~ 259 (600)
..|++|+|+|+. .-...+++.|...|.+|.+|||...... ..++.+. ++.+.++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 368999999994 3466899999999999999999864332 3466554 7999999999999854
No 485
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.93 E-value=0.89 Score=52.99 Aligned_cols=36 Identities=25% Similarity=0.275 Sum_probs=32.9
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
-.|++|.|||.|..|.+.|..|+..|++|++||+..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 468999999999999999999999999999998653
No 486
>PLN02740 Alcohol dehydrogenase-like
Probab=89.93 E-value=1 Score=48.64 Aligned_cols=45 Identities=29% Similarity=0.592 Sum_probs=36.9
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~-~~~~a~~~g~ 240 (600)
.|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999999999999998 699988765 3445555554
No 487
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.88 E-value=0.85 Score=50.44 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=62.9
Q ss_pred ccC-CEEEEEecChhHHHHHHHhhcC--CCEEEEECCCCChh--HHHHcCCccc-C--HHHHhccCCEEEEecCCCcccc
Q 007512 195 LVG-KTLAVLGFGKVGSEVARRAKGL--GMHVIAHDPYAPAD--RARAIGVDLV-S--FDEAIATADFISLHMPLTPATS 266 (600)
Q Consensus 195 l~g-ktiGIIGlG~IG~~vA~~l~~~--g~~V~~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aDvV~l~~Pl~~~t~ 266 (600)
+.+ +++.|||+|.+|.+.++.|... |++|.++|...... ...+.|+... . -.+.+.++|+|+..--..+...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p 83 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALATP 83 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCCCH
Confidence 345 7899999999999999999866 58999999754221 1122366542 1 2344688998876543222111
Q ss_pred ----------ccccHhHh-c-cCCCceEEEEccCCccccHHHHHHhHhc
Q 007512 267 ----------KVLNDETF-G-KMKKGVRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 267 ----------~li~~~~l-~-~mk~gailvNvarg~ivde~aL~~aL~~ 303 (600)
.++.+-++ . .++...+-|-=+.|+.-...-+...|+.
T Consensus 84 ~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 84 EIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 12333222 2 2343333333346877555555555654
No 488
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=89.86 E-value=1.5 Score=44.90 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCCEEEEECCCCC---h---hHHHHcCCccc-CHHHHhccCCEEEEecCCCccccccccHhHhccCCCce
Q 007512 209 GSEVARRAKGLGMHVIAHDPYAP---A---DRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGV 281 (600)
Q Consensus 209 G~~vA~~l~~~g~~V~~~d~~~~---~---~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~ga 281 (600)
|..+|-.+...|..|+..||+.+ . ++-.+.|++.+ +-.+..+.+.+.++-+|....|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67888888888999999999873 2 23456788876 44578899999999999988777765 67888999999
Q ss_pred EEEEccCCccc
Q 007512 282 RIINVARGGVI 292 (600)
Q Consensus 282 ilvNvarg~iv 292 (600)
+|-|+..-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875543
No 489
>PRK06382 threonine dehydratase; Provisional
Probab=89.75 E-value=0.48 Score=51.95 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=50.3
Q ss_pred EeecCccEEEEEecCCCCChhhHHhhhhcCCccccceEeeee---cCCCcEEEEEEeCCC--CcH-HHHHHHhcC
Q 007512 521 DVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRV---APRKHAVMAIGVDEQ--PRK-ETLKKIGDV 589 (600)
Q Consensus 521 ~~~g~~~~Liv~~~D~pG~Ia~V~~iL~~~~INIa~m~v~R~---~~g~~al~~i~~D~~--~~~-~~l~~l~~~ 589 (600)
...+....+.+..+|+||.+..++.+++++++||..+...|. ...+.+.+.+.++.. ... +++++|++.
T Consensus 325 ~~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 325 ENLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred HhcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 344555667788999999999999999999999988877642 223455666666653 333 778888764
No 490
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.73 E-value=1 Score=48.11 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=36.2
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC-ChhHHHHcCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA-PADRARAIGV 240 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~-~~~~a~~~g~ 240 (600)
.|++|.|.|.|.+|...++.++..|.+ |++.|+.. ..+.+++.|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 478999999999999999999999984 98888765 3445555554
No 491
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.71 E-value=0.7 Score=51.21 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=62.1
Q ss_pred EEEEecChhHHH-HHHHhhcCCCEEEEECCCCCh--hHHHHcCCccc--CHHHHhccCCEEEEecCCCccc---------
Q 007512 200 LAVLGFGKVGSE-VARRAKGLGMHVIAHDPYAPA--DRARAIGVDLV--SFDEAIATADFISLHMPLTPAT--------- 265 (600)
Q Consensus 200 iGIIGlG~IG~~-vA~~l~~~g~~V~~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl~~~t--------- 265 (600)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... .-.+.+.++|+|+..--..+..
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~ 81 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER 81 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence 679999999998 999999999999999976532 22334566542 1234567899988753222211
Q ss_pred -cccccHhHh-cc-CCCc-eEEEEccCCccccHHHHHHhHhc
Q 007512 266 -SKVLNDETF-GK-MKKG-VRIINVARGGVIDEEALVRALDS 303 (600)
Q Consensus 266 -~~li~~~~l-~~-mk~g-ailvNvarg~ivde~aL~~aL~~ 303 (600)
..++++..| .. +++. .+-|-=+.|+.-...-+...|+.
T Consensus 82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 122333322 22 3322 33333346887555555566654
No 492
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.60 E-value=0.33 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.440 Sum_probs=29.8
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~~ 230 (600)
+.++|.|+|+|.+|..+|+.|...|+ ++..+|+..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 36799999999999999999998887 788888754
No 493
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.45 E-value=0.91 Score=52.82 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=32.9
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCC
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~ 230 (600)
..|++|.|||-|..|.+.|..|+..|++|..|+...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998654
No 494
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=89.21 E-value=0.54 Score=50.06 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=43.2
Q ss_pred EEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCCh--hHHHHcC-----------Ccc-cCHHHHhccCCEEE
Q 007512 199 TLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPA--DRARAIG-----------VDL-VSFDEAIATADFIS 256 (600)
Q Consensus 199 tiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~--~~a~~~g-----------~~~-~~l~ell~~aDvV~ 256 (600)
+|+|||. |.+|.++|-.+...|. ++..+|..... ..+..+. +.. .+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 7999998 9999999999885553 79999975321 1111110 111 24457899999999
Q ss_pred EecCC
Q 007512 257 LHMPL 261 (600)
Q Consensus 257 l~~Pl 261 (600)
++.-.
T Consensus 85 itAG~ 89 (323)
T TIGR01759 85 LVGAF 89 (323)
T ss_pred EeCCC
Confidence 97753
No 495
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=89.15 E-value=0.44 Score=52.06 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=32.4
Q ss_pred eeccCCEEEEEecChhHHHHHHHhhcCCC-EEEEECCC
Q 007512 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGM-HVIAHDPY 229 (600)
Q Consensus 193 ~~l~gktiGIIGlG~IG~~vA~~l~~~g~-~V~~~d~~ 229 (600)
..|.+.+|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 46899999999999999999999997775 78888864
No 496
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=89.10 E-value=1.1 Score=46.80 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=29.3
Q ss_pred cCCEEEEEecChhHHHHHHHhhcCCCE-EEEECCCC
Q 007512 196 VGKTLAVLGFGKVGSEVARRAKGLGMH-VIAHDPYA 230 (600)
Q Consensus 196 ~gktiGIIGlG~IG~~vA~~l~~~g~~-V~~~d~~~ 230 (600)
.|+++.|+|.|.||...++.++.+|.+ |++.|...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~ 179 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP 179 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 477899999999999999999999987 55666543
No 497
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=89.00 E-value=0.32 Score=45.81 Aligned_cols=85 Identities=16% Similarity=0.175 Sum_probs=53.2
Q ss_pred ccCCEEEEEecChhHHHHHHHhhcCCCEEEEECCCCChhHHHHcCCcccCHHHHhccCCEEEEecCCCcccccccc---H
Q 007512 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLN---D 271 (600)
Q Consensus 195 l~gktiGIIGlG~IG~~vA~~l~~~g~~V~~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Pl~~~t~~li~---~ 271 (600)
..|++|++||+= +.++++++..+.++..+|.++........++.....++++++||+|++.-- | ++| .
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs----T--lvN~Ti~ 79 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS----T--LVNGTID 79 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH----H--CCTTTHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee----e--eecCCHH
Confidence 468999999961 237888888899999999876322111112233457789999999988543 1 122 3
Q ss_pred hHhccCCCceEEEEccC
Q 007512 272 ETFGKMKKGVRIINVAR 288 (600)
Q Consensus 272 ~~l~~mk~gailvNvar 288 (600)
..++.++++..++=.|-
T Consensus 80 ~iL~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 80 DILELARNAREVILYGP 96 (147)
T ss_dssp HHHHHTTTSSEEEEESC
T ss_pred HHHHhCccCCeEEEEec
Confidence 45666776666666653
No 498
>PRK08374 homoserine dehydrogenase; Provisional
Probab=88.83 E-value=1.4 Score=47.15 Aligned_cols=101 Identities=19% Similarity=0.294 Sum_probs=55.9
Q ss_pred CEEEEEecChhHHHHHHHhhc--------CC--CEEEEE-CCC-------C-ChhHHHH----cC----C------cccC
Q 007512 198 KTLAVLGFGKVGSEVARRAKG--------LG--MHVIAH-DPY-------A-PADRARA----IG----V------DLVS 244 (600)
Q Consensus 198 ktiGIIGlG~IG~~vA~~l~~--------~g--~~V~~~-d~~-------~-~~~~a~~----~g----~------~~~~ 244 (600)
.+|+|+|+|.+|+.+++.+.. +| .+|.+. |.+ . ..+.+.+ .+ + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 489999999999999998865 55 566653 422 1 2221111 11 0 1126
Q ss_pred HHHHh--ccCCEEEEecCCCccccccccHhHhccCCCceEEEEccCCccc-cHHHHHHhHhc
Q 007512 245 FDEAI--ATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI-DEEALVRALDS 303 (600)
Q Consensus 245 l~ell--~~aDvV~l~~Pl~~~t~~li~~~~l~~mk~gailvNvarg~iv-de~aL~~aL~~ 303 (600)
+++++ .++|+|+-+++.. ... .-....++.|.-+|-...|.+- ..++|.+..++
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~ 139 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANE 139 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHH
Confidence 67777 5799999877522 122 1122335566666655555433 34455444333
No 499
>PRK05442 malate dehydrogenase; Provisional
Probab=88.81 E-value=0.61 Score=49.70 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=42.0
Q ss_pred CEEEEEec-ChhHHHHHHHhhcCCC-------EEEEECCCCCh--hHHHHc-----------CCcc-cCHHHHhccCCEE
Q 007512 198 KTLAVLGF-GKVGSEVARRAKGLGM-------HVIAHDPYAPA--DRARAI-----------GVDL-VSFDEAIATADFI 255 (600)
Q Consensus 198 ktiGIIGl-G~IG~~vA~~l~~~g~-------~V~~~d~~~~~--~~a~~~-----------g~~~-~~l~ell~~aDvV 255 (600)
++|+|||. |.+|..+|-.+...|+ ++..+|..... ..+..+ .+.. .+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998764332 78899974321 111110 1111 2455889999999
Q ss_pred EEecC
Q 007512 256 SLHMP 260 (600)
Q Consensus 256 ~l~~P 260 (600)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 99775
No 500
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=88.79 E-value=0.51 Score=50.49 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=53.4
Q ss_pred cCCEEEEEec-ChhHHHHHHHhhc--C-CCEEEEECCCCCh--hH-HHHcCCcccCHHHH-hccCCEEEEecCCCccccc
Q 007512 196 VGKTLAVLGF-GKVGSEVARRAKG--L-GMHVIAHDPYAPA--DR-ARAIGVDLVSFDEA-IATADFISLHMPLTPATSK 267 (600)
Q Consensus 196 ~gktiGIIGl-G~IG~~vA~~l~~--~-g~~V~~~d~~~~~--~~-a~~~g~~~~~l~el-l~~aDvV~l~~Pl~~~t~~ 267 (600)
++.+|+|||. |.+|+.+.+.|.. | ..++..+....+. .. .........++++. +.++|++++|+|..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~----- 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE----- 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence 4668999997 9999999999987 5 4566554322111 10 00001222244443 37899999999943
Q ss_pred cccHhHhcc-CCCceEEEEcc
Q 007512 268 VLNDETFGK-MKKGVRIINVA 287 (600)
Q Consensus 268 li~~~~l~~-mk~gailvNva 287 (600)
+..+.... .+.|+.+||.+
T Consensus 78 -~s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 78 -ASAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred -HHHHHHHHHHHCCCEEEECC
Confidence 22333332 26799999987
Done!