RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007512
(600 letters)
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 667 bits (1724), Expect = 0.0
Identities = 187/546 (34%), Positives = 286/546 (52%), Gaps = 22/546 (4%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+N +AAEH +ALL A +R + A
Sbjct: 63 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRAR 236
DAS++ W+R+ + G + GKT+ V+G G++G VA+R G +V+A+DPY RA
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 237 AIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
+G++L+S D+ +A ADFIS+H+P TP T+ +++ E K K GV I+N ARGG++DE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 297 LVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAV 356
L A+ G V A LDVF EP DS L + +V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 357 VGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASS 416
AL GE AVN E+ P+++L KLG LA L ++ V
Sbjct: 301 RLALAGEFVPDAVNVGGGVVN--EEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGE 356
Query: 417 RAPDDLDTRLLRAMITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLE 476
A + +LR +GL + + V VNA A +RG+ + +
Sbjct: 357 LA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICK---ASESPNHRS 411
Query: 477 FIQVQIANVESKFASAISESGEIKVEGRV--KDGVPHLTKVGSFEVDVSLEGSIILCRQV 534
+ V+ ++ + V G + + ++ D+ +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGDVPAIEE 594
D+PG +G +G++LG+ VN+ + A A + + +D+ + I +
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYK 522
Query: 595 FVFLKL 600
+ L
Sbjct: 523 LEVVDL 528
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 484 bits (1248), Expect = e-170
Identities = 125/307 (40%), Positives = 191/307 (62%), Gaps = 2/307 (0%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
+ VL+A L + + +L + V + L + +A+IVRS KV R V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
ES A +LKV+ RAGVG+DN+D+ AA E G VVNAP A++ + AE + L+ ++AR +A
Sbjct: 62 ES-APKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGM+++ +DPY +RA
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEE 295
+ + V + + +D +++H+PL +T ++N+E MKK +IN +RG V+D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 296 ALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355
ALV+AL G +A A LDVF EEP P D L + + V +TPH+GAST+EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 356 VVGALKG 362
VV LKG
Sbjct: 301 VVKILKG 307
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 482 bits (1243), Expect = e-169
Identities = 149/310 (48%), Positives = 199/310 (64%), Gaps = 3/310 (0%)
Query: 55 ISSKPTVLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRD 113
+++ VLI++ L +L + V NLS EEL ++ C+ LIVRS TKV D
Sbjct: 23 MANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTAD 82
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A +L+VVGRAG G+DNVDL AAT G LV+N P N+++AAE ++ +AR +
Sbjct: 83 VINA-AEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
QA AS+K GKW+R K++G L GKTL +LG G++G EVA R + GM I +DP +
Sbjct: 142 PQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE 201
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ + GV + +E DFI++H PL P+T+ +LND TF + KKGVR++N ARGG++D
Sbjct: 202 VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVD 261
Query: 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
E AL+RAL SG+ A AALDVFTEEPP D LV HE V PHLGAST EAQ EIA
Sbjct: 262 EGALLRALQSGQCAGAALDVFTEEPPR-DRALVDHENVISCPHLGASTKEAQSRCGEEIA 320
Query: 354 EAVVGALKGE 363
V +KG+
Sbjct: 321 VQFVDMVKGK 330
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 476 bits (1227), Expect = e-165
Identities = 115/367 (31%), Positives = 173/367 (47%), Gaps = 14/367 (3%)
Query: 40 APPRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKI 96
P + S + D + VL+ E + Q ++ + + L +L I
Sbjct: 1 GPGSMTERLSLSRD----RINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAI 56
Query: 97 SLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTV 156
S + +RS T++ ++F + A RL VG VG + V+L AA + G V NAP +NT
Sbjct: 57 SSAHIIGIRSRTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTR 115
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
+ AE I + + R + S AG W++ + GKTL ++G+G +GS+V A
Sbjct: 116 SVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA 175
Query: 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276
+ LGM V +D S DE + T+D +SLH+P + +TSK++ + K
Sbjct: 176 ESLGMTVRYYDTSDKLQYGNVKPA--ASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRK 233
Query: 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVT 332
MKKG +IN ARG +D EAL + L G +A AA+DVF EP + L E V
Sbjct: 234 MKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVI 293
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKL 392
+TPH+G ST EAQE + E+ +V AVN P V F+ + E
Sbjct: 294 LTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENR 353
Query: 393 GRLAVQL 399
+ L
Sbjct: 354 PGILNSL 360
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 460 bits (1185), Expect = e-160
Identities = 95/334 (28%), Positives = 163/334 (48%), Gaps = 8/334 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES 117
+P V + K+ + L+ L ++A+V+ S EEL I D +IV TK+ R+V E+
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
A RLKV+ G DN+DL AT+ G V + A AE + L+ + R + AD
Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 178 ASVKAGKWQRNKYVGVS------LVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP 231
++ G+W+ + + L GK + +LG G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ + + + DE + +D + L +PLT T ++N+E K++ G ++N+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIE 351
+DE+A+ A+ G++ A DVF +EP +TPH +EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 352 IAEAVVGALKGELAATAVNAPMVPAEVLTELKPF 385
E ++ L+GE+ VN ++ + +K
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENVKML 333
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 455 bits (1173), Expect = e-158
Identities = 110/306 (35%), Positives = 172/306 (56%), Gaps = 6/306 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFA-NVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSA 119
LI + + + + L E VD +S EEL I D ++VRS TKV +DV E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEK-G 66
Query: 120 GRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADAS 179
+LK++ RAG+G+DN+D A + VV AP A+T +A E I L+ A AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIG 239
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D ++A I
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 240 VDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVR 299
VS +E + +D ISLH+ ++ +++ F MK V I+N +R ++ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 300 ALDSGRVAQAALDVFTEEPPPAD--SKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
+ G+V A DVF EPP + +L++HERV VT H+GA T EAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 358 GALKGE 363
A+K
Sbjct: 305 NAMKEL 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 444 bits (1144), Expect = e-153
Identities = 109/395 (27%), Positives = 180/395 (45%), Gaps = 24/395 (6%)
Query: 57 SKPTVLIAEKLGQAGLDLLNE--FANVDC-AYNLSPEELCTKISLCDALIVRSGTKVNRD 113
K L+ E + Q L+ L + N++ L E+L I + +RS T + D
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V + A +L +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 63 VINA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 174 AQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
+A+A G + GK L ++G+G +G+++ A+ LGM+V +D
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NK 179
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ + + +D +SLH+P P+T ++ + MK G +IN +RG V+D
Sbjct: 180 LPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD 239
Query: 294 EEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHERVTVTPHLGASTMEAQEGVA 349
AL AL S +A AA+DVF EP P S L + + V +TPH+G ST EAQE +
Sbjct: 240 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIG 299
Query: 350 IEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFV--------------ELAEKLGRL 395
+E+A ++ +AVN P V + + AE+ +
Sbjct: 300 LEVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNI 359
Query: 396 AVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAM 430
A Q + + + V + + + + ++A+
Sbjct: 360 AAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI 394
Score = 33.0 bits (76), Expect = 0.31
Identities = 12/64 (18%), Positives = 30/64 (46%)
Query: 529 ILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLKKIGD 588
++ ++PG++ + I + VN++ + A + V+ I DE ++ L+ +
Sbjct: 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKA 393
Query: 589 VPAI 592
+P
Sbjct: 394 IPGT 397
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 440 bits (1134), Expect = e-152
Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 12/340 (3%)
Query: 43 RLVIIASAAADGISSKPTVLIAEKL-GQAGLDLLNEFANVDCAYNLSPEELCTKI-SLCD 100
+S S P V + + + +L + A V S +E+ K+ +
Sbjct: 6 HHHHHSSGLVPRGSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAV 65
Query: 101 ALIVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAE 160
++ + R+ E L+++ R G G DN+D+ +A + G V N P A+ A+
Sbjct: 66 GALMYHTITLTREDLEK-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETAD 124
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRN-------KYVGVSLVGKTLAVLGFGKVGSEVA 213
+ + + R +++ G ++ + G+TL ++G G+VG VA
Sbjct: 125 STLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA 184
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVS-FDEAIATADFISLHMPLTPATSKVLNDE 272
RAK G +V+ +DPY RA+G+ VS + + +D ++LH L ++ND
Sbjct: 185 LRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDF 244
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPP-ADSKLVQHERV 331
T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP + L +
Sbjct: 245 TVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304
Query: 332 TVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNA 371
TPH + +A + E A + A+ G + + N
Sbjct: 305 ICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNC 344
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 410 bits (1057), Expect = e-140
Identities = 84/350 (24%), Positives = 145/350 (41%), Gaps = 22/350 (6%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRS--GTKVNRD 113
++ + IA L G +L+ L I D +I + ++
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGC--LVVNAPTANTVAAAEHGIALLAAMAR 171
+ A +LK+V AGVG D++DL + G V+ +N V+ AEH + + + R
Sbjct: 78 RIDK-AKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 172 NVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
N A + W+ + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 230 A--PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
P D +G V + +E +A AD ++++ PL T ++N E K KKG ++N
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 287 ARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT-----VTPHLGAST 341
ARG + E + AL+SG++ DV+ +P P D +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 342 MEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEK 391
++AQ A + G+ + ++ E T K + + +K
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGT--KAYGKHDKK 364
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 409 bits (1054), Expect = e-140
Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 11/351 (3%)
Query: 42 PRLVIIASAAADGISSKPTVLIAEKLGQAGLDLLNEFAN---VDCAYNLSPEELCTKISL 98
++V + A + + P L + D L + V EL I
Sbjct: 3 KKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPD 62
Query: 99 CDALIVRSG--TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTV 156
LI V + + A LK++ AG+G D++DL AA G V +N V
Sbjct: 63 LHVLISTPFHPAYVTAERIKK-AKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVV 121
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRN--KYVGVSLVGKTLAVLGFGKVGSEVAR 214
+ AE + + + RN V G+W Y L GKT+ +G G++G + +
Sbjct: 122 SVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQ 181
Query: 215 RAKGLGMHVIAHDPYA-PADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDE 272
R K G +++ HD + + G V +E + D I ++MPLT T + N E
Sbjct: 182 RLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKE 241
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT 332
GK+KKGV I+N ARG +++ +A+V A++SG + + DV+ +P P D
Sbjct: 242 LIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQA 301
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELK 383
+TPH +T++AQ A + + KGE T + E+ + +
Sbjct: 302 MTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENY-IVKDGELAPQYR 351
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 391 bits (1008), Expect = e-133
Identities = 90/341 (26%), Positives = 153/341 (44%), Gaps = 20/341 (5%)
Query: 62 LIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALI-VRSGTKVNRDVFESSAG 120
KL L +E V +L +++ +AL+ +R T+V R + +
Sbjct: 13 DAVRKLDCFSLLQDHEV-KVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-LP 70
Query: 121 RLKVVGRAGV----GIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+LK++ + G ++DL A T+ G +V+ + VA AE AL+ A R + Q
Sbjct: 71 KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAAQRRIPQY 129
Query: 177 DASVKAGKWQRNKY----------VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
AS+K G WQ++ +G L G+TL + G+GK+G VA + GM+V+
Sbjct: 130 VASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVW 189
Query: 227 DPYAPADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIIN 285
+RARA G + S D +D +S+H+ L T ++ +MK +N
Sbjct: 190 GRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVN 249
Query: 286 VARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQ 345
+R +++E +V AL+ GR AA+DVF EP L++ E TPH+G E+
Sbjct: 250 TSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESY 309
Query: 346 EGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFV 386
E + ++ L+G + N + ++
Sbjct: 310 EMYFGIAFQNILDILQGN-VDSVANPTALAPALIRAEGHHH 349
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 392 bits (1008), Expect = e-132
Identities = 81/342 (23%), Positives = 138/342 (40%), Gaps = 31/342 (9%)
Query: 62 LIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGR 121
++A++ + ++ ++ D L+VRS T+V+R
Sbjct: 3 ILADENIPVVDAFFADQGSIR--RLPGRAIDRAALAEVDVLLVRSVTEVSRAALA--GSP 58
Query: 122 LKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVK 181
++ VG +G D++DL E G +AP N ++ + L AMA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 182 AGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVD 241
G L +T V+G G+VG + +GLG V+ DP +AR +
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 242 LVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGVIDEEAL 297
VS + +A AD ISLH PL T +L++ ++ G ++N +RG V+D +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 298 VRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 357
R L+ G + ALDV+ EP + + TPH+ ++E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQA--DPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 358 GALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQL 399
+ + +L P + A L L +
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAV 317
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 387 bits (996), Expect = e-130
Identities = 83/344 (24%), Positives = 141/344 (40%), Gaps = 13/344 (3%)
Query: 48 ASAAADGISSKPTVLIAEKLGQAGLDLLNEFAN----VDCAYNLSPEELCTKISLCDALI 103
I P L+ G+ GL E V + ++ D +I
Sbjct: 35 TLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVI 94
Query: 104 VRSG--TKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEH 161
+ + + A LK+ AG+G D+VDL +A + V N+++ AEH
Sbjct: 95 SQPFWPAYLTPERIAK-AKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEH 153
Query: 162 GIALLAAMARNVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVARRAKGL 219
+ ++ ++ RN + + G W V L + + G++G V RR
Sbjct: 154 VVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPF 213
Query: 220 GMHVIAHDPY-APADRARAIGVDL-VSFDEAIATADFISLHMPLTPATSKVLNDETFGKM 277
+H+ D + P + + + + ++ D ++L+ PL P T ++NDET
Sbjct: 214 DVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLF 273
Query: 278 KKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHL 337
K+G I+N ARG + D +A+ RAL+SGR+A A DV+ +P P D +TPH+
Sbjct: 274 KRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHI 333
Query: 338 GASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTE 381
+T+ AQ A E + +G +V L
Sbjct: 334 SGTTLTAQARYAAGTREILECFFEGRPIRDEYL--IVQGGALAG 375
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 379 bits (976), Expect = e-129
Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 15/279 (5%)
Query: 90 EELCTKISLCDALIVR----SGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGC 145
E T + D + +V +D + R K++ G+D++D+ E
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVV 73
Query: 146 LVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGF 205
L NA A +++ AEH ALL A A+N+ + + +KAG ++++ L GK L +LG+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 206 GKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPAT 265
G +G VA AK GM VIA+ + + V S + +DF+ + +PLT T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQN---VDVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 266 SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKL 325
++N +K + I+NVAR V+ + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 326 VQHERVTVTPHLGASTMEAQEGVAIEIA-EAVVGALKGE 363
++PH+ +AI++A E V +GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 373 bits (959), Expect = e-125
Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 34/349 (9%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
S+ +L+ E + +L + V +++ DAL+VRS TKVN +
Sbjct: 1 SNAMKILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLL 57
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
+ VG A G D+VD A + G AP N +A E+ + L +A
Sbjct: 58 S--GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD-- 113
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRA 235
G SL +T+ ++G G VGS + R + LG+ + DP A
Sbjct: 114 ----------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AA 154
Query: 236 RAIGVDLVSFDEAIATADFISLHMPLTP----ATSKVLNDETFGKMKKGVRIINVARGGV 291
R D + DE + AD ++ H PL T + ++ ++K G +IN RG V
Sbjct: 155 RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPV 214
Query: 292 IDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIE 351
+D AL+ L++G+ LDV+ EP + L++ + T H+ T+E + +
Sbjct: 215 VDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAVDI-GTSHIAGYTLEGKARGTTQ 272
Query: 352 IAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQLV 400
+ EA + E ++PA + L + + LV
Sbjct: 273 VFEAYSAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV 319
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 364 bits (938), Expect = e-123
Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 14/328 (4%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDV 114
P ++I ++ + L LL + L+ EE+ + A++ +V+ D
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
++ L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 LQA-CPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 175 QADASVKAGKWQ--RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-P 231
ADA V++GK++ + ++ G L T+ LG G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 232 ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGV 291
+ +G+ V+ E A++DFI L +PL T ++N E ++ G ++N RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 292 IDEEALVRALDSGRVAQAALDVFTEE-------PPPADSKLVQHERVTVTPHLGASTMEA 344
+DE A++ AL+ G++ A DVF E P D L+ H TPH+G++
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 345 QEGVAIEIAEAVVGALKGELAATAVNAP 372
+ + A+ ++ AL GE AVN
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 351 bits (902), Expect = e-117
Identities = 113/340 (33%), Positives = 191/340 (56%), Gaps = 17/340 (5%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDC---AYNLSPEELCTKISLCDALIVRSGTKVNRDV 114
KP V I ++ + G+ +L + V+ + E L K+ DAL+ +++++V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
FE+ A +L++V VG DN+D+ AT+ G V N P T A A+ ALL A AR+V
Sbjct: 62 FEN-APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 175 QADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
+ D V++G+W++ ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 228 PYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
+ R + + ++ + +DF+ L +PLT T ++N+E MKK +IN+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 288 RGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEG 347
RG V+D ALV+AL G +A A LDVF EEP + +L + + V +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 348 VAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVE 387
+A +A+ ++ +GE+ T VN EV+ KP E
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVN-----REVIKIRKPGFE 334
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 338 bits (870), Expect = e-112
Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 18/321 (5%)
Query: 72 LDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAGRLKVVGRAGVG 131
+ ++ + ++ + + V K+ ++ RLK++ VG
Sbjct: 16 YQEALKDLSLKIYTTDVSKVPENELKKAELISVFVYDKLTEELLSK-MPRLKLIHTRSVG 74
Query: 132 IDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNK-Y 190
D++DL + G LV + P + + AEH A++ + + + + + VK + ++
Sbjct: 75 FDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEI 134
Query: 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIA 250
+ L TL V+G G++GS VA GM V+ +D + + G S DE +
Sbjct: 135 LARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVV-KREDLKEKGCVYTSLDELLK 193
Query: 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAA 310
+D ISLH+P T T ++N+E MK GV +IN ARG V+D +AL RA G+ +
Sbjct: 194 ESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLG 253
Query: 311 LDVFTEEPPP---------------ADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEA 355
LDVF +E +L + V +TPH+ T ++ E + E +
Sbjct: 254 LDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKV 313
Query: 356 VVGALKGELAATAVNAPMVPA 376
V +KG+L N + P+
Sbjct: 314 VKAFVKGDLEQIKGNFVVGPS 334
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 336 bits (864), Expect = e-111
Identities = 79/307 (25%), Positives = 134/307 (43%), Gaps = 17/307 (5%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAA 139
++ E D + T VFE A +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRN-KYVGVSLVGK 198
++G + N P + A AE + + RN+ + A ++AG +++ ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
T+ V+G G +G + KG G VIA+DPY + D VS ++ +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
+P + ++N+ F MK G +IN AR +ID +A++ L SG++A +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 319 P-------------PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELA 365
P +L+ V ++PH+ T A + + +V L
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 366 ATAVNAP 372
+T V P
Sbjct: 325 STEVTGP 331
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 334 bits (860), Expect = e-111
Identities = 80/304 (26%), Positives = 134/304 (44%), Gaps = 15/304 (4%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKVVGRAGVGIDNVDLAA 139
V+ L E D ++V + ++ + + + VG+DN+D+A
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 140 ATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKT 199
A E G + N P + A AEH A + R D V + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM 259
+ V+G G +G + +G G VI +D + G + S D+ AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 260 PLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP 319
P PA ++NDE+ KMK+ V I+NV+RG ++D +A++R LDSG++ A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 320 -------------PADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA 366
+ L+ V VTP T A + ++ + + ++G+ A
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 367 TAVN 370
T V
Sbjct: 328 TPVK 331
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 322 bits (827), Expect = e-106
Identities = 70/320 (21%), Positives = 130/320 (40%), Gaps = 21/320 (6%)
Query: 69 QAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRDVFES-SAGRLKV 124
+ N+ D L+ +E + DA+I+R N+ + +K
Sbjct: 13 LPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKY 72
Query: 125 VGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGK 184
+ G D++D A E G + P + A AE + + R+ A +
Sbjct: 73 ILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKN 132
Query: 185 WQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV 243
++ + + + T+ V+G G++G A+ G+G VI D + + V
Sbjct: 133 FKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQV 190
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
S DE + +D I++H P V+ + KMK G ++N ARG ++D EA++ A++S
Sbjct: 191 SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES 250
Query: 304 GRVAQAALDVFTEEPP---------PADSKLVQ-----HERVTVTPHLGASTMEAQEGVA 349
G++ DV E ++ L + + RV +TPHLG+ T EA + +
Sbjct: 251 GKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMV 310
Query: 350 IEIAEAVVGALKGELAATAV 369
+ + + +
Sbjct: 311 EVSYQNLKDLAETGDCPNKI 330
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 313 bits (804), Expect = e-103
Identities = 90/320 (28%), Positives = 151/320 (47%), Gaps = 9/320 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K +LI L +A + E +V + ++ +E+ DAL++ K ++V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 175 QADASVKAGKWQR---NKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY-- 229
+ + ++ W + VG L KTL + GFG +G +A+RA+G M + D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 230 APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
+ +D A S D ++ + F SL+ P TP T N T + +G ++N ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
++D E +V AL++GR+A A DVF EP + + PH+G++ +A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 350 IEIAEAVVGALKGELAATAV 369
+ + + G + A+
Sbjct: 300 HQANDLIDALFGGADMSYAL 319
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 312 bits (803), Expect = e-103
Identities = 106/315 (33%), Positives = 156/315 (49%), Gaps = 13/315 (4%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDVFES 117
VL+ L LD L E + L EL ++ LI +++ +V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 118 SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQAD 177
A LKV+ VG+D+VDL AA E G V + P T A A+ +ALL A+AR V +
Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 178 ASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR 234
A + G W+ +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ + +S +E + AD +SLH PLTP T ++LN E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAE 354
EALV AL G + A LDV EP P L +TPH+G++ +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 355 AVVGALKGELAATAV 369
++ L+G V
Sbjct: 296 NLLAVLEGREPPNPV 310
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 307 bits (788), Expect = e-100
Identities = 57/313 (18%), Positives = 109/313 (34%), Gaps = 22/313 (7%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
+ + +L + L ++ + + +A +V +++ +
Sbjct: 3 LYVNFELPPEAEEELRKYFKI---------VRGGDLGNVEAALV---SRITAEELAK-MP 49
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLK + G+D++ + V +N A AE +ALL A + + Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
K G + R + G+ +AVLG G++G+ V + LG V
Sbjct: 109 KRGDYGR-DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT----PKEGPWR 163
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
S +EA+ A +PL T ++ + M + +NV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 301 LDSGRVAQAALDVFT-EEPPPADSKLVQHERVTVTPHLGASTM--EAQEGVAIEIAEAVV 357
L A DV+ D++ V TP + + +E ++
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 358 GALKGELAATAVN 370
G
Sbjct: 284 TYATGGRPRNIAK 296
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 304 bits (781), Expect = 2e-99
Identities = 88/324 (27%), Positives = 153/324 (47%), Gaps = 9/324 (2%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYN-----LSPEELCTKISLCDALIVRSGTKV 110
V + ++ G L A+ + + +EL ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 111 NRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMA 170
++ + +++ LKV+ VGID++ L + G V P T AE ++LL
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 171 RNVAQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
R + +A VK G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 228 PYAP-ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
P + A + VS E A +DFI + LTPAT + N + F KMK+ IN+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 287 ARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQE 346
+RG V++++ L +AL SG++A A LDV + EP P + L+ + + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 347 GVAIEIAEAVVGALKGELAATAVN 370
+++ A ++ L+GE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 285 bits (731), Expect = 1e-91
Identities = 85/345 (24%), Positives = 146/345 (42%), Gaps = 26/345 (7%)
Query: 57 SKPTVLIA---EKLGQAGLDLLNEFANVDCAYNLSPEELCT-----KISLCDALIVRSGT 108
+P VL+ + + V A + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 109 ------KVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHG 162
N D+ LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 163 IALLAAMARNVAQADASVKAGKWQR-------NKYVGVSLVGKTLAVLGFGKVGSEVARR 215
+ L+ ++ R + ++ + + G + + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 216 A-KGLGMHVIAHDPY-APADRARAIGVDLV-SFDEAIATADFISLHMPLTPATSKVLNDE 272
A GLGM ++ +D A A+ +A+G + V S +E +D +S+ +P T ++++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVT 332
F MK G RI+N ARG VI ++AL+ AL SG++ A LDV EP +L++ + VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 333 VTPHLGASTMEAQEGVAIEIAEAVVGALKGELAA-TAVNAPMVPA 376
+T H+G +E + L T P+
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 282 bits (725), Expect = 8e-91
Identities = 73/320 (22%), Positives = 147/320 (45%), Gaps = 7/320 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRD 113
+ + A L + +++ L+P + ++ + L V + + +
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V LK + VG D++D+AAA G V++ P + A AE + L+ R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 174 AQADASVKAGKWQRNK---YVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230
+AD V++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 231 PADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGG 290
+ + + D + +D + P P L+ + K+ +G +IN++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 291 VIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAI 350
+I+++AL+ AL S + A LDVF EP D + + + +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 351 EIAEAVVGALKGELAATAVN 370
+ + + + ++ ++
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 277 bits (711), Expect = 5e-89
Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 4/311 (1%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
VL+A+ L L D + + + + + +
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYGNHPLL--KTILARPTN 60
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
+LK V G+D + L A G +V N + A +E +A + ++ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGV 240
+ + +L G+ L + G G++G +A +A LGMHVI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 241 DLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRA 300
+ +A+ATA+FI +PLTP T + + E F + K+ +IN+ RG +D AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 301 LDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
LD +++ AALDV EP P D L Q + V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 361 K-GELAATAVN 370
K G L V+
Sbjct: 301 KDGTLVRNQVD 311
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 254 bits (652), Expect = 5e-80
Identities = 92/321 (28%), Positives = 145/321 (45%), Gaps = 14/321 (4%)
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYN-LSPEELCTKISLCDALIVRSGTKVNRDV 114
+ KP +L+ E + +D L +V Y L + A+ G ++ +
Sbjct: 28 NVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEW 87
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
E L ++ GVG D VDLA A V P A+ GIAL+ A+ R V
Sbjct: 88 MEK-LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVG 146
Query: 175 QADASVKAGKWQRNKY--VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA 232
D V+ G+W + +G S GK + VLG G++G +A RA+ GM V +
Sbjct: 147 DGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWN----- 201
Query: 233 DRARAIGVD---LVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARG 289
R+ GVD S + +D +++ + + AT +++ + ++NVARG
Sbjct: 202 -RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 290 GVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVA 349
V+DE+AL+ AL SG +A A LDVF EP S+ + PH G++T+E + +
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMG 319
Query: 350 IEIAEAVVGALKGELAATAVN 370
+ + GE A VN
Sbjct: 320 KLVLANLAAHFAGEKAPNTVN 340
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 250 bits (641), Expect = 2e-78
Identities = 79/316 (25%), Positives = 138/316 (43%), Gaps = 8/316 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDV 114
VL+ + L++ + + + L + A++ S + ++
Sbjct: 22 EAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAEL 81
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
++ +L++V VG+D VDL E G V N P T A+ I L+ A+ R +
Sbjct: 82 IDA-LPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 175 QADASVKAGKWQRNKY-VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPAD 233
+ D V+ G W+ + + GK + ++G G++G VA RA+ + +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 234 RARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVID 293
+ E + +D + + PLTP T+ ++N E + +IN+ RG +D
Sbjct: 201 TNYTYYGSV---VELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVD 257
Query: 294 EEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIA 353
E LV AL GR+ A LDVF EP KL E V + PH+G+ T+E ++ +A +
Sbjct: 258 EPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVV 316
Query: 354 EAVVGALKGELAATAV 369
+ G+ T V
Sbjct: 317 GNLEAHFSGKPLLTPV 332
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 201 bits (514), Expect = 5e-60
Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 8/287 (2%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S+ T+L+ + LL + + + + +A I+ + + +
Sbjct: 4 SQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEPARAKPLLA 63
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
A +L G+D + L A + N +E+ L ++ R +
Sbjct: 64 K-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLY 121
Query: 177 DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADR 234
K WQ + Y L G+TL +LG G +G +A K GM V+ A
Sbjct: 122 REQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF 179
Query: 235 ARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDE 294
+ + + ++ +A AD I +P T T + F K G + NV RG I+E
Sbjct: 180 DQVYQLP--ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINE 237
Query: 295 EALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
L+ AL +G++ A LDVF +EP PADS L + +TPH A +
Sbjct: 238 GDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS 284
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 185 bits (472), Expect = 5e-54
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 12/229 (5%)
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAA------AEHGIALLAAMARNVA 174
RLK V G G+D + L + P E+ ++ + R
Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118
Query: 175 QADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPA 232
A W+ + ++ ++G G +G++VA + G + + +
Sbjct: 119 DYQALKNQALWKP--LPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP 176
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVI 292
+G + + + +P T T ++N E ++ G ++N+ARG +
Sbjct: 177 GVESYVGRE--ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHV 234
Query: 293 DEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTVTPHLGAST 341
E L+ ALDSG++ A LDVF++EP P +S L +H RV +TPH+ A T
Sbjct: 235 QEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT 283
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 80.4 bits (198), Expect = 8e-17
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHD-PYAPADRARAIGVDLVSFD---E 247
++ G +AVLG G+VG VAR+ LG V R +G++ +
Sbjct: 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQ 209
Query: 248 AIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
+ D +P + V+ +M +I++A + +
Sbjct: 210 ELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALL 264
Query: 308 QAAL 311
L
Sbjct: 265 VPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 106/652 (16%), Positives = 182/652 (27%), Gaps = 236/652 (36%)
Query: 53 DGISSKP----------TVLIAEKLGQAGLDLLNEF-ANVDCAYN--------LSPEELC 93
D S++P +L+ L +F + +P EL
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 94 TK-ISLCDALIVRSGTKVNRDV-------FESS----------AGRLKVVGRAGVGIDNV 135
K + +L+ S V FE+ A +L +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 136 DLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKA---GKWQ------ 186
+ ++ P + AL A V + +A + A G Q
Sbjct: 122 LIKNYIT-ARIMAKRPFDK-----KSNSALFRA----VGEGNAQLVAIFGG--QGNTDDY 169
Query: 187 ----RNKY------VG--VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPA 232
R+ Y VG + +TL+ L + A + G++++ +P
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIR---TTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 233 DRARAIGVDLVSFDEAIATADFISLHMPLT--------PATSKVLNDETFGKMKKGVRII 284
D + + + IS PL T+K+L T G+++ ++
Sbjct: 227 D------------KDYLLSI-PIS--CPLIGVIQLAHYVVTAKLL-GFTPGELRSYLKGA 270
Query: 285 NVARGGVIDEEALVRAL-DSG----RVAQAALDV-F------------TEEPPPADSKLV 326
G++ A+ A DS + A+ V F T PP +
Sbjct: 271 TGHSQGLV--TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 327 QHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATA------VNAP--MV---P 375
++ +P M + + E + V L A VN +V P
Sbjct: 329 ENNEGVPSP------MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 376 AEVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGL 435
+ L L L ++ SG+ ++ + S R R L
Sbjct: 383 PQSLYGL-----------NLTLRKAKAPSGLDQSRIPF-SERKL-KFSNRFL-------- 421
Query: 436 IEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISE 495
P++ F ++ L + I D L V + +
Sbjct: 422 --PVASPF----HSHL------LVPASDLINKD------LVKNNVSFNAKDIQIP----- 458
Query: 496 SGEIKVEGRVKDGVPHLTKVGSFEVDV-SLEGSI-------ILCRQVD------------ 535
V D T GS D+ L GSI I+ V
Sbjct: 459 ---------VYD-----TFDGS---DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 536 ---QPGMIGTVGSILGSENVNVSFMSVG---RVAPRKHAVMAIGVDEQPRKE 581
PG +G L N + G RV ++A +D P +
Sbjct: 502 LDFGPGGASGLGV-LTHRNKD------GTGVRV------IVAGTLDINPDDD 540
Score = 60.1 bits (145), Expect = 2e-09
Identities = 68/414 (16%), Positives = 127/414 (30%), Gaps = 141/414 (34%)
Query: 17 LKLSLSSKHSLSPLFSVSFN------HKRAPPRLVIIASAAADGISSKPTVLIAEKLGQA 70
L + + +F+ N + P + S S P LI + Q
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI----SCP--LIG--VIQ- 245
Query: 71 GLDLLNEFAN--VDC-AYNLSPEELCTKI---SLCDALIV------RSGTKVNRDVFESS 118
A+ V +P EL + + + +V + + + F S
Sbjct: 246 -------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS---WESFFVS 295
Query: 119 AGR-LKVVGRAGVGIDNVDLAAATE-FGCLVVNAPTANTVAAAEHGIALLAAMA--RNV- 173
+ + V+ GV E + + P + + E+ + + M N+
Sbjct: 296 VRKAITVLFFIGV--------RCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISNLT 345
Query: 174 -AQADASVKAGKWQRNKY------VGVSLV-GKTLAVL-GFGKVGSEVARRAKGL-GMHV 223
Q V + N + V +SLV G V+ G + L G+++
Sbjct: 346 QEQVQDYVN----KTNSHLPAGKQVEISLVNGAKNLVVSGP----------PQSLYGLNL 391
Query: 224 IAHDPYAPA--DRARAIGVDLVSFDE--AIATADF--ISL--HMP-LTPATSKVLNDETF 274
AP+ D++R + F E + F ++ H L PA+ + D
Sbjct: 392 TLRKAKAPSGLDQSR------IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD--- 442
Query: 275 GKMKKGVRIINVARGGV-IDEEAL------------VRALDSGRVAQAALDVFTEEPPPA 321
+ + V + + + +R L SG +++ +D P
Sbjct: 443 -----------LVKNNVSFNAKDIQIPVYDTFDGSDLRVL-SGSISERIVDCIIRLP--- 487
Query: 322 DSKLVQHERVTVTP--H-----------LGASTMEAQEGVAIEIAEAVVGALKG 362
V+ E T H LG T ++G + + A G L
Sbjct: 488 ----VKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA--GTLDI 535
Score = 58.5 bits (141), Expect = 5e-09
Identities = 87/501 (17%), Positives = 152/501 (30%), Gaps = 147/501 (29%)
Query: 7 SCAASLRQPSLKLSLSSKHSLSPLFSVSF-----NHKRAPPRLVIIASAAADGISSKPTV 61
+ AA L Q + + +K + + K++ L A +G +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF---RAVGEGNAQ---- 155
Query: 62 LIAEKLGQ-AGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
L+A GQ D E ++ Y L LI S ++ + +
Sbjct: 156 LVAIFGGQGNTDDYFEELRDL---YQTYH-------VLVGDLIKFSAETLSELIRTTLDA 205
Query: 121 RLKVVGRAGVGID------------NVD-LAAA---------TEFGCLVVNA------PT 152
KV + G++ + D L + + VV A P
Sbjct: 206 E-KVFTQ---GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 153 ---ANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVG 209
+ A H L+ A+A +A+ D+ W+ + + V K + VL F +G
Sbjct: 262 ELRSYLKGATGHSQGLVTAVA--IAETDS------WE-SFF---VSVRKAITVLFF--IG 307
Query: 210 SEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM------PLTP 263
++ Y +I D + +E + + M
Sbjct: 308 VR-------------CYEAYPNTSLPPSILEDSLENNEGVPS------PMLSISNLTQEQ 348
Query: 264 ATSKVLNDETFGKMKKGVRI--INVARGGVI-----DEEALVRALDSGRVAQAALDV--- 313
V + K V I +N A+ V+ L L + A + LD
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLDQSRI 407
Query: 314 -FTEEPPPADSKLVQHER---VTV---TPHLGASTMEAQE-----GVAI---EIAEAVV- 357
F+E KL R V + L ++ + V+ +I V
Sbjct: 408 PFSER------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 358 ---GA----LKGELAATAVNAPMV-PA--EVLTELKP--FVEL----AEKLGRLAVQLVA 401
G+ L G ++ V+ + P E T+ K ++ A LG L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL-THRNK 520
Query: 402 GGSGVKTVKVSYASSRAPDDL 422
G+GV+ + DD
Sbjct: 521 DGTGVRVIVAGTLDINPDDDY 541
Score = 55.1 bits (132), Expect = 6e-08
Identities = 60/369 (16%), Positives = 108/369 (29%), Gaps = 156/369 (42%)
Query: 209 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKV 268
GS+ +G+GM D Y + A+ + ++ A
Sbjct: 1625 GSQ----EQGMGM-----DLYKTSKAAQDV------WNRA-------------------- 1649
Query: 269 LNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQH 328
D F K G I+++ + + + G+ + E D K ++
Sbjct: 1650 --DNHF-KDTYGFSILDIVINNPV-NLTIHFGGEKGKRIRENYSAMIFETIV-DGK-LKT 1703
Query: 329 ERV--TVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFV 386
E++ + H + T +++G L+AT PA L E F
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKG---------------LLSATQ-FTQ--PALTLMEKAAFE 1745
Query: 387 ELAEKLGRLAVQLVAGGS-GVKTVKVSYA--SSRAPDDLDTRLLRAMITKGLIEPISDVF 443
+L K A AG S G YA +S A ++ I +
Sbjct: 1746 DLKSKGLIPADATFAGHSLG------EYAALASLA---------------DVM-SIESL- 1782
Query: 444 VNLVNADYTAKQRGLRLTEE-------------------RILLDGSPESPLEFIQ----- 479
V +V RG+ + R+ S E+ ++
Sbjct: 1783 VEVV------FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 480 ----VQIAN--------VESKFASAISESGEIKVEGRVKDGVPHLTKVGSF--------- 518
V+I N V +G+++ + +T V +F
Sbjct: 1837 TGWLVEIVNYNVENQQYV-------A--AGDLR-------ALDTVTNVLNFIKLQKIDII 1880
Query: 519 --EVDVSLE 525
+ +SLE
Sbjct: 1881 ELQKSLSLE 1889
Score = 43.5 bits (102), Expect = 2e-04
Identities = 48/282 (17%), Positives = 88/282 (31%), Gaps = 93/282 (32%)
Query: 4 SAASCAASLRQPSLKLSLSSKHSLSPLFSV------SFNHKRAPPRLVIIASAAADGISS 57
+A + A + S K +++ LF + ++ + PP ++ + +G+ S
Sbjct: 279 TAVAIAETDSWESF-FVSVRK-AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 58 KPTVLIA----EKLGQAGLDLLNEFA-----------NVDCAYNLS--PEELCTKISLCD 100
P + I+ E++ Q ++ N N +S P+ L L
Sbjct: 337 -PMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLY---GLNL 391
Query: 101 AL---IVRSGTKVNRDVFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAP------ 151
L SG +R F S +LK R F L V +P
Sbjct: 392 TLRKAKAPSGLDQSRIPF--SERKLKFSNR---------------F--LPVASPFHSHLL 432
Query: 152 -TANTV---AAAEHGIALLAAM----------ARNVAQADASV----------KAGKWQR 187
A+ + ++ ++ A ++ S+ KW+
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 188 NKYVGVSLVGKTLAVLGFG-----KVGSEVARRAKGLGMHVI 224
+ K +L FG +G R G G+ VI
Sbjct: 493 ------TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Score = 40.8 bits (95), Expect = 0.001
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 50/145 (34%)
Query: 25 HSL---SPLFSV----SFN------HKR------APPR-------LVIIA---SAAADGI 55
HSL + L S+ S R A PR +IA A
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 56 SSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVF 115
S + + E++G+ L+ E N YN+ ++ V +G D
Sbjct: 1822 SQEALQYVVERVGKRTGWLV-EIVN----YNVENQQ-----------YVAAGDLRALDTV 1865
Query: 116 ESSAGRLKVVGRAGVGIDNVDLAAA 140
+ +K+ ID ++L +
Sbjct: 1866 TNVLNFIKL-----QKIDIIELQKS 1885
Score = 37.7 bits (87), Expect = 0.015
Identities = 44/289 (15%), Positives = 75/289 (25%), Gaps = 92/289 (31%)
Query: 24 KHSLSPL-FSVSFNHKRAPPRLVIIASAAAD-GISSKPTVLIAEKLGQAGLDLLNEFANV 81
H FS+ P L I I + +I E + L F +
Sbjct: 1651 NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 82 D-----CAYNLSPEELCTK-------ISLCDALIVR----SGTKVNRDVF------ESSA 119
+ + S + L + ++L + G F E +A
Sbjct: 1711 NEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 120 GRLKVVGRAGVGIDNVDLAAATE--F--GCLVVNAPTANTVAAAEHGIALLAAMARNVAQ 175
L A V + + + E F G + A V E G + +A N +
Sbjct: 1770 --L--ASLADV----MSIESLVEVVFYRGMTMQVA-----VPRDELGRSNYGMIAINPGR 1816
Query: 176 ADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGL---------GM-HVIA 225
V + + V V +R L +V A
Sbjct: 1817 --------------------VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 226 HDPYAPADRARAIGVDLVSFDEAIATADFIS------LHMPLTPATSKV 268
G DL + D +FI + + + + +V
Sbjct: 1857 -------------G-DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 52.5 bits (126), Expect = 1e-07
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 136 DLAAATEFGCLVV--NAPTANTVAAAEHGIALLAAMARN---VAQADASVKAGKWQRNKY 190
D T C++ + AA+ L+ R+ + + +V+ ++
Sbjct: 91 DHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQH 150
Query: 191 VGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYAPADRARAIG---VDLVSF 245
++ G +AVLG G+ G +AR LG +V A A R +G
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLA-RITEMGLVPFHTDEL 209
Query: 246 DEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA--RGGVIDEEA 296
E + D + S +LN M I+++A GG + A
Sbjct: 210 KEHVKDIDIC-----INTIPSMILNQTVLSSMTPKTLILDLASRPGGTDFKYA 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 7e-07
Identities = 52/348 (14%), Positives = 108/348 (31%), Gaps = 98/348 (28%)
Query: 271 DETFGKMKKGVR-IINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
D G+ + + I++V E+A V D V + ++E D ++ +
Sbjct: 8 DFETGEHQYQYKDILSV------FEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKD 59
Query: 330 RVTVTPHLGASTMEAQEGVAIEIAEAV--------VGALKGELAATA------------- 368
V+ T L + + QE + + E V + +K E +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 369 --VNAPMVPAEVLTELKPFVELAEKLGRLAVQ---LVAG--GSGVKTVKVSYASSRAPDD 421
N V + L+P+++L + L L L+ G GSG KT
Sbjct: 120 YNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWVALDVCL----- 172
Query: 422 LDTRLLRAM------ITKG-------LIEPISDVFVNLV-----NADYT---------AK 454
++ M + ++E + + + +D++ +
Sbjct: 173 -SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 455 QRGLRLTEER------ILLDG--SPESPLE-F-IQVQIANVESKFASAI-SESGEIKVEG 503
RL + + ++L + ++ F + +I + ++F S
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLSCKIL-LTTRFKQVTDFLSAATTTHI 289
Query: 504 RVKDGVPHLTKVGSFE-----VDVSLEGSIILCRQVDQ--P---GMIG 541
+ LT +D + L R+V P +I
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIA 334
Score = 43.3 bits (101), Expect = 3e-04
Identities = 82/535 (15%), Positives = 143/535 (26%), Gaps = 221/535 (41%)
Query: 8 CAASLRQPSLKLSLSS-KHSLSPLFSVSFNHKRAPPRLVIIA------------------ 48
+ S ++KL + S + L L S ++ L+++
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENC---LLVLLNVQNAKAWNAFNLSCKIL 269
Query: 49 -----SAAADGISSKPTVLIAEKLGQAGL---DLLNEFAN-VDCAYNLSPEELCT----K 95
D +S+ T I+ L ++ + +DC P E+ T +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 96 ISLCDALIVRSGT-------KVNRD----VFESSAGRLKVVGRAGVGIDNVDLAAATE-F 143
+S+ I R G VN D + ESS ++ ++ A + F
Sbjct: 330 LSIIAESI-RDGLATWDNWKHVNCDKLTTIIESS-------------LNVLEPAEYRKMF 375
Query: 144 GCLV-----VNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGK 198
L + PT LL+ + W V +V
Sbjct: 376 DRLSVFPPSAHIPT-----------ILLSLI---------------WFDVIKSDVMVVVN 409
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
L S V ++ K + + Y + + + +LH
Sbjct: 410 KLHKY------SLVEKQPKESTISI--PSIY---------------LELKVKLENEYALH 446
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
R I +D + + DS P
Sbjct: 447 -----------------------RSI-------VDHYNIPKTFDSD----------DLIP 466
Query: 319 PPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEV 378
P D H + HL IE E + V
Sbjct: 467 PYLDQYFYSH----IGHHL----------KNIEHPE---------------RMTLFR-MV 496
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITK----- 433
+ + F+E +K+ + A GS + T+ + + I
Sbjct: 497 FLDFR-FLE--QKIRHDSTAWNASGSILNTL------------QQLKFYKPYICDNDPKY 541
Query: 434 -GLIEPISDVFV-----NLVNADYTA-KQRGLRLTEERILLDGSPESPLEFIQVQ 481
L+ I D F+ NL+ + YT + L +E I + QVQ
Sbjct: 542 ERLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA-------HKQVQ 588
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative
deamination mechanism, oxidoreductase; HET: PHE NAD;
1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB:
1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Length = 355
Score = 49.1 bits (118), Expect = 2e-06
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLVSFDEAIAT- 251
SL G T+ V G G VG +A A G ++ D A A+G V+ ++ ++T
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTP 231
Query: 252 ADFISLHMPLTP-ATSKVLNDETFGKMKKGVRII 284
D P A V+ E + ++
Sbjct: 232 CDV------FAPCAMGGVITTEVARTLD--CSVV 257
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase,
NAD, one-carbon metabolism, phosphoprotein; HET: NAD;
2.25A {Homo sapiens} PDB: 3mtg_A*
Length = 435
Score = 46.1 bits (110), Expect = 2e-05
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 13/99 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
+ GK + V G+G+VG K +G V DP A +A G LV +E I
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 251 TAD-FISLHMPLTPAT--SKVLNDETFGKMKKGVRIINV 286
D I+ T V+ E +MK + N+
Sbjct: 275 QVDIVIT-------CTGNKNVVTREHLDRMKNSCIVCNM 306
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus
sphaericus} SCOP: c.2.1.7 c.58.1.1
Length = 364
Score = 45.6 bits (109), Expect = 3e-05
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 187 RNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFD 246
+ + SL G ++V G G V + ++ G ++ D A+ V+ +
Sbjct: 163 KEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD-----VNKAAVS-AAVAEE 216
Query: 247 --EAIATADFISLHMP-LTP-ATSKVLNDETFGKMKKGVRII 284
+A+A + P A VLND T ++K ++I
Sbjct: 217 GADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLK--AKVI 256
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 45.1 bits (106), Expect = 3e-05
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 197 GKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPY-APADRARAIGVDLVSFDEAIATADF 254
KT+A+LG GK+G+ + R+ H+ A + DR + +G+ L D I AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 255 ISLHMP 260
+ L +P
Sbjct: 71 VVLALP 76
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics,
SGC stockholm, S genomics consortium, SGC, hydrolase,
NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB:
3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A*
1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Length = 436
Score = 45.3 bits (108), Expect = 4e-05
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GKT V G+G VG A +G G V+ DP A +A G ++ ++ +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 251 TAD-FISLHMPLTPAT--SKVLNDETFGKMKKGVRIINV 286
A F++ T ++ E F +M+ + N+
Sbjct: 266 EAHIFVT-------TTGNDDIITSEHFPRMRDDAIVCNI 297
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics,
seattle structural G center for infectious disease; HET:
ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Length = 464
Score = 45.4 bits (108), Expect = 4e-05
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ G G V DP A +A G ++V+ D+A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
TAD ++ T V+ + KMK + N+
Sbjct: 302 TADIVVT-----TTGNKDVITIDHMRKMKDMCIVGNI 333
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
S-adenosyl-L-homocysteine hydro NAD, one-carbon
metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei}
PDB: 3glq_A*
Length = 494
Score = 43.6 bits (103), Expect = 1e-04
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD F++ V+N + M+ + N+
Sbjct: 332 KADIFVT-----ATGNYHVINHDHMKAMRHNAIVCNI 363
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium
falciparum} SCOP: c.2.1.4 c.23.12.3
Length = 479
Score = 42.9 bits (101), Expect = 3e-04
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KGLG V DP A +A G ++V+ DE +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKG 280
D FI+ V+ E KMK
Sbjct: 312 KGDFFIT-----CTGNVDVIKLEHLLKMKNN 337
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 42.5 bits (100), Expect = 4e-04
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KG G V DP A +A G D+V+ +EAI
Sbjct: 270 ALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP-INALQAMMEGFDVVTVEEAIG 328
Query: 251 TAD-FISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD ++ ++ E MK + N+
Sbjct: 329 DADIVVT-----ATGNKDIIMLEHIKAMKDHAILGNI 360
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A
{Thermus thermophilus}
Length = 419
Score = 41.3 bits (98), Expect = 6e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 41.2 bits (97), Expect = 7e-04
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDP-YAPADRARAIGVDLV-----SFDEAIAT 251
+ + +LG G +G + R V ++ + A A G D+ + A A
Sbjct: 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE 68
Query: 252 ADFISLHMPLTPATSKVLND 271
I L +P+ A +L+
Sbjct: 69 DALIVLAVPM-TAIDSLLDA 87
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A
{Thermus thermophilus HB27} PDB: 3aoe_A
Length = 440
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
+ +G+ + G +A+ GFG VG+ AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase;
oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}
Length = 421
Score = 41.0 bits (97), Expect = 0.001
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ + +AV GFG VG+ + + G V A
Sbjct: 204 KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET:
NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7
c.58.1.1
Length = 421
Score = 40.6 bits (96), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
Length = 424
Score = 40.6 bits (96), Expect = 0.001
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ L + + GFG GS +A+ G VI
Sbjct: 213 KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 39.5 bits (92), Expect = 0.002
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGVDLVSFD---EAIATA 252
TL G G ++R G +I +P + RA G + + + ++
Sbjct: 6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP-DQMEAIRASGAEPLLWPGEEPSLDGV 64
Query: 253 DFISLHMP 260
+ +
Sbjct: 65 THLLISTA 72
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A
{Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB:
1hrd_A 1k89_A 1aup_A 2yfh_A
Length = 449
Score = 39.5 bits (93), Expect = 0.003
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 222 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition,
oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB:
3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A
1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*
Length = 501
Score = 38.5 bits (90), Expect = 0.006
Identities = 11/46 (23%), Positives = 14/46 (30%)
Query: 180 VKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
+ + + KT V GFG VG R G I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 37.6 bits (88), Expect = 0.009
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K + +L K V G G V + + G V+
Sbjct: 231 KDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLT 267
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 37.2 bits (87), Expect = 0.010
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 198 KTLAVLGFGKVGSEVAR--RAKGLGMHVIAHDPYAPA-DRARAIG-VDLV--SFDEAIAT 251
KT+ + G G +G+ +A + ++ ++ + D A G VD F A
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAAL 66
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV 286
AD I L +P+ T + +K+ V I +
Sbjct: 67 ADVIILAVPIK-KTIDFIKILADLDLKEDVIITDA 100
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 37.5 bits (88), Expect = 0.012
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARR-AKGLGMHVIA 225
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 201 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVA 238
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis,
oligomer organization, oxidoreductase; 2.7A {Plasmodium
falciparum}
Length = 470
Score = 37.3 bits (87), Expect = 0.013
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K + + + +T V G G V ++ L + V+
Sbjct: 244 KSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 36.4 bits (85), Expect = 0.019
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAP-ADRARAIG-VDLVSFD-EAIATADFIS 256
+ V+G G +G+ +A + G ++I ++A VD D + TA I
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 257 LHMPLTPATSKVLND 271
L P+ L
Sbjct: 63 LCTPIQ-LILPTLEK 76
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 35.8 bits (83), Expect = 0.036
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 20/81 (24%)
Query: 195 LVGKTLAVLGFGKVGSEVARRAKGL-----GMHVI-------AHDPYAPADRARAIGVDL 242
L GK + ++G G G +GL G+ + + A +A G +
Sbjct: 35 LQGKKVVIVGCGAQG-----LNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV 89
Query: 243 VSFDEAIATADFISLHMPLTP 263
+++E I AD + + LTP
Sbjct: 90 GTYEELIPQADLV---INLTP 107
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 35.2 bits (82), Expect = 0.053
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD-----PYAPADRARAIGVDLV--SFDEAI 249
K + VLG + G AR LG V +D A G+ +V S +
Sbjct: 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLEL 68
Query: 250 ATADF 254
DF
Sbjct: 69 LDEDF 73
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 35.0 bits (81), Expect = 0.060
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDLVSFDEAIATA 252
+ GK +A++G+G G A K G+ V A +A A G+ + A+A A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 253 DFISLHMPLTP--ATSKVLNDETFGKMKKGVRII 284
D + M LTP ++ +E +KKG +
Sbjct: 74 DVV---MILTPDEFQGRLYKEEIEPNLKKGATLA 104
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 34.8 bits (81), Expect = 0.066
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY--APA----DR---------------A 235
+ +LG G++G EVA + LG+ VIA D Y APA R
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVV 70
Query: 236 RAIGVDLVSFD-EAIATA 252
+ + EAIAT
Sbjct: 71 ELEKPHYIVPEIEAIATD 88
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.5 bits (79), Expect = 0.072
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVI-AHDPY--------APADRARAIGVDLVSFDEA 248
T+A +GFG+ +A G + A+D A RA +GV+ +
Sbjct: 25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84
Query: 249 IATADFI 255
IA AD +
Sbjct: 85 IACADVV 91
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.9 bits (77), Expect = 0.077
Identities = 11/59 (18%), Positives = 22/59 (37%)
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISL 257
+ + G G G + + G V+ G +++ + EA + +D I L
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVL 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.082
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 495 ESGEIK-VEGRVK----DGVPHLTKVGSFEVDVSLE 525
E +K ++ +K D P L + ++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA------IKATME 47
Score = 29.9 bits (66), Expect = 1.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 12/35 (34%)
Query: 406 VKTVKVS---YASSRAPDDLDTRLLRAMITKGLIE 437
+K ++ S YA AP A+ K +E
Sbjct: 22 LKKLQASLKLYADDSAP---------ALAIKATME 47
Score = 29.1 bits (64), Expect = 2.2
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 9/26 (34%)
Query: 228 PYAPADRARAIGVDLVSFDEAIATAD 253
YA D A A+ + AT +
Sbjct: 31 LYAD-DSAPALAIK--------ATME 47
>2yfg_A NADP-specific glutamate dehydrogenase; oxidoreductase; 2.50A
{Escherichia coli} PDB: 3sbo_A 2yfg_E
Length = 447
Score = 34.6 bits (80), Expect = 0.094
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K G+ G ++V G G V +A G VI
Sbjct: 224 KRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVIT 260
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 34.6 bits (80), Expect = 0.10
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 22/78 (28%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY--APA----DR---------------A 235
+ + +LG G++G E+A A+ LG+ V+A D Y APA R
Sbjct: 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVV 78
Query: 236 RAIGVDLVSFD-EAIATA 252
D + + EAI
Sbjct: 79 EREKPDAIIPEIEAINLD 96
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 33.9 bits (78), Expect = 0.10
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGVDLVSFD--EAIATAD 253
+ + G G +G E+ARR G V + + D+ D +I
Sbjct: 4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLR 63
Query: 254 FISLHMPLTPA 264
L + +
Sbjct: 64 PEILVYCVAAS 74
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 33.8 bits (77), Expect = 0.12
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDP-YAPADRARAIGVDLV-SFDEAIATADFI 255
+ +GFG+V +A R + G+ V+ +P+ RA V + + +E + + +
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 33.7 bits (78), Expect = 0.17
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYAPADRARAIGVD--LVSFDEAIATA 252
G + V GFG +GS + A +G V A + + D A ++GV +
Sbjct: 177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQD-ALSMGVKHFYTDPKQCKEEL 235
Query: 253 DFI----SLHMPLTP 263
DFI H L
Sbjct: 236 DFIISTIPTHYDLKD 250
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 33.7 bits (78), Expect = 0.17
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGVD--LVS 244
+ G+ G +LG G VG + AK +G HV + + +G D ++
Sbjct: 173 SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIG 232
Query: 245 FDEAIATA-----DFI----SLHMPLTP 263
D+A + D++ +H L P
Sbjct: 233 SDQAKMSELADSLDYVIDTVPVHHALEP 260
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium
smegmatis} PDB: 2we7_A
Length = 386
Score = 33.6 bits (77), Expect = 0.18
Identities = 27/152 (17%), Positives = 39/152 (25%), Gaps = 17/152 (11%)
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
A + LLAA V + +V + V G + VA++
Sbjct: 164 AVTDDARGLLAAGRSEVLTYGPDGQRRGEGMEVFVSSYAPRPRMLVFGAIDFAAAVAQQG 223
Query: 217 KGLGMHVIAHDPY-APADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFG 275
LG V D A AR D V D + + T
Sbjct: 224 AFLGYRVTVCDARPVFATTARFPTADEVVVDWPHRYLAAQAEAGAIDARTV--------- 274
Query: 276 KMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
+ + D L AL +A
Sbjct: 275 -------VCVLTHDPKFDVPLLEVALRLPDIA 299
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 33.6 bits (78), Expect = 0.20
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 194 SLVGKTLAVLGFGKVGSEVARR-AKGLGMHVIA 225
+L GKT+A+ G+G G +A+ ++ GM V+A
Sbjct: 209 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVA 241
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 33.3 bits (77), Expect = 0.23
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGVD--LVS 244
KY G+ GK + ++G G +G + AK G V P + + G D LVS
Sbjct: 180 KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVS 239
Query: 245 FDEAIATA-----DFI----SLHMPLTP 263
D+ A D I S PL P
Sbjct: 240 RDQEQMQAAAGTLDGIIDTVSAVHPLLP 267
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 33.3 bits (77), Expect = 0.23
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD----PYAPADRARAIGVDLVSFDEA-IAT 251
GK + ++G G G G+ D P A+ S ++ +
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMA 64
Query: 252 ADFI 255
AD I
Sbjct: 65 ADLI 68
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 32.2 bits (73), Expect = 0.29
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAH--DPYAPADRARAIGVDLVSFDEAIATADFIS 256
+ +LG G +A R G G V+ +P R + +EA+++ + I
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNP-KRTARLFPSAAQVTFQEEAVSSPEVIF 88
Query: 257 L 257
+
Sbjct: 89 V 89
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 32.1 bits (72), Expect = 0.39
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 5/109 (4%)
Query: 199 TLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLH 258
+ + G G +G + + G V + A I + V + A A +
Sbjct: 21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVIMAVPYPALAALAKQYATQ 80
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVA 307
+ K++ D T + V +E + DS +
Sbjct: 81 LK-----GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLK 124
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 31.9 bits (73), Expect = 0.59
Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 13/74 (17%)
Query: 192 GVSLVGKTLAVLGF---GKVG-------SEVARRAKGLGMHVIAHDPYAPADRARAIGVD 241
G + G +A+LG+ G V+ HDPY I +
Sbjct: 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDN 407
Query: 242 LVSFDEAIATADFI 255
L +E + AD I
Sbjct: 408 L---EEVVRNADAI 418
Score = 28.4 bits (64), Expect = 8.4
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 218 GLGMHVIAHDPYAPADRARAIGVDLVSFDEA---IATADFISLHMPLTPA--TSKVLNDE 272
G+G H + D Y + +L + A A ++ MP T L
Sbjct: 288 GVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALER- 346
Query: 273 TFGKMKKGVRI 283
GK G ++
Sbjct: 347 -LGKKMDGSKV 356
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A
{Pseudomonas aeruginosa} PDB: 2xu2_A*
Length = 252
Score = 31.4 bits (72), Expect = 0.64
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 15/76 (19%)
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG-FGKVGSEVARRAKGL 219
HG AL + + A + A + K L ++ A
Sbjct: 117 HG-ALYNDLVGDDELLRAVLDA----------CAAYRKGLPLMVLALADNGRELELADEA 165
Query: 220 GMHVIAHDPYAPADRA 235
+ ++ A ADRA
Sbjct: 166 DVPLLFE---AFADRA 178
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization
protein, structural genomics; 1.70A {Pyrococcus
horikoshii} SCOP: c.6.2.5
Length = 255
Score = 31.0 bits (71), Expect = 0.93
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 16/75 (21%)
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG 220
HG AL AM + A A ++ + K L ++ S VA A+ +G
Sbjct: 111 HG-ALYNAMVKEEDLARAVIEG----------ILDFDKDLILVTLS--NSRVADIAEEMG 157
Query: 221 MHVIAHDPYAPADRA 235
+ V ADRA
Sbjct: 158 LKVAHE---VFADRA 169
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 30.0 bits (68), Expect = 0.95
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
K AV+G G+ G + + +G V+A D
Sbjct: 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD 36
>3on5_A BH1974 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
oxidoreductase; 2.80A {Bacillus halodurans}
Length = 362
Score = 30.9 bits (70), Expect = 1.0
Identities = 12/108 (11%), Positives = 27/108 (25%), Gaps = 27/108 (25%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDP---YAPADR-ARAIGVDLVSFDEAIATADFI 255
L + G G + A +G + + D A + + + +
Sbjct: 202 LIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEKHFFPDADEIIVDFPADFLR----- 256
Query: 256 SLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDS 303
+ P ++ + D+E L L+
Sbjct: 257 --KFLIRPDDF----------------VLIMTHHFQKDQEILHFLLEK 286
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 30.8 bits (69), Expect = 1.0
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 6/76 (7%)
Query: 185 WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVI--AHDPYAPADRARAIGVDL 242
N Y G +AVLG G VG +A LG V DP A RA +
Sbjct: 11 HHENLYF----QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGA 66
Query: 243 VSFDEAIATADFISLH 258
F + + + L
Sbjct: 67 PPFSQWLPEHPHVHLA 82
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics
consortium, structural genomics, protein structure
initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP:
c.6.2.5
Length = 252
Score = 30.6 bits (70), Expect = 1.1
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 16/75 (21%)
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG 220
HG L A+ ADA +A V L ++G GSE+ R K G
Sbjct: 106 HG-MLYNQAAKEAQLADAIARA----------VYACDPALILVGLA--GSELIRAGKQYG 152
Query: 221 MHVIAHDPYAPADRA 235
+ ADR
Sbjct: 153 LTTREE---VFADRG 164
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family;
structural genomics, oxidoreductase, PSI-2; HET: UGA;
1.70A {Porphyromonas gingivalis}
Length = 450
Score = 30.9 bits (71), Expect = 1.1
Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 158 AAEHGIA---LLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG--FGKVGS-- 210
A ++G L A N Q Y ++ G+ +A+ G F K G+
Sbjct: 280 AEDNGYRMEVLEAVERVNEKQKSILFDKFS----TYYKGNVQGRCVAIWGLSF-KPGTDD 334
Query: 211 -------EVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSF----DEAIATAD 253
+ + +G V +DP A A+ D V + +A+ A+
Sbjct: 335 MREAPSLVLIEKLLEVGCRVRVYDPVA-MKEAQKRLGDKVEYTTDMYDAVRGAE 387
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 30.7 bits (70), Expect = 1.3
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP-ADRARAIGVDLVSFDE 247
G T+ V G G VG A A+ LG VI D A+A G ++
Sbjct: 186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL 238
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.6 bits (70), Expect = 1.4
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 198 KTLAVLGFGKVGSEVAR--RAKGLGMHVIAHDPYAPA-DRARAIG-VDLVSFD---EAIA 250
+ + ++G G +G A+ R G + +D + +A +G +D +
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 251 TADFISLHMPLTPATSKVLND 271
+ DF+ L P+ ++
Sbjct: 62 SPDFVMLSSPVR-TFREIAKK 81
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus} SCOP: c.6.2.5
Length = 250
Score = 30.2 bits (69), Expect = 1.5
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 16/75 (21%)
Query: 161 HGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG 220
HG AL R+ A A A V L ++ G+ A+ G
Sbjct: 111 HG-ALYLKACRDRETARAIALA----------VKAFDPGLPLVVLP--GTVYEEEARKAG 157
Query: 221 MHVIAHDPYAPADRA 235
+ V+ A +RA
Sbjct: 158 LRVVLE---AFPERA 169
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 30.3 bits (69), Expect = 1.7
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 198 KTLAVLGFGKVGSEVAR--RAKGLGMHVIAHDPYAPA-DRARAIG-VDLVSFD---EAIA 250
+ + ++G G +G A+ R G + +D + +A +G +D +
Sbjct: 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 93
Query: 251 TADFISLHMPLTPATSKVLND 271
+ DF+ L P+ ++
Sbjct: 94 SPDFVMLSSPVR-TFREIAKK 113
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 30.3 bits (69), Expect = 1.7
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 216 AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATS----KVLND 271
+ + V A+DP+ D A+ A + + + K L+D
Sbjct: 345 NQEPDIEVCAYDPHVELDFV------EHDMSHAVKDASLVLI------LSDHSEFKNLSD 392
Query: 272 ETFGKMKKGV 281
F KMK V
Sbjct: 393 SHFDKMKHKV 402
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 30.3 bits (69), Expect = 1.7
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLG-MHVIAHDPYAP-ADRARAIGVDLVSFDE 247
G + + G G VG A A+ LG VI D G + +
Sbjct: 186 GSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRN 238
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 30.3 bits (69), Expect = 1.9
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHV--IAHDPYAPADRARAIGVD--LVSFDEAIATA 252
GK + V+G G +G + A +G HV A+A+G D + S + A
Sbjct: 195 GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVVNSRNADEMAA 253
Query: 253 -----DFI----SLHMPLTP 263
DFI + L
Sbjct: 254 HLKSFDFILNTVAAPHNLDD 273
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Length = 108
Score = 28.5 bits (63), Expect = 2.5
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 50 AAADGISSKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTK 109
+A I S I + G+ DLL + P+++C++ LC + +
Sbjct: 1 GSAMAIVSMECKTIVSQYGEMIWDLLVS--------GVRPDQVCSQAGLCFVDGAQHVSS 52
Query: 110 VNRDVFESSAGRLKV 124
+ V E V
Sbjct: 53 NIKTVVERETEGSSV 67
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 29.9 bits (66), Expect = 2.6
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 19/151 (12%)
Query: 282 RIINVARGGVIDEEALVRALDSGRVAQAALD--VFTEEPPPADSKLVQHERVTVTPHLGA 339
++ +A G + L + D +++ + + PP D+ ++ +
Sbjct: 34 DVVRLAGGHDSELRELTQKYDPAMISRLLVAEILSRCPPPSNDTPVLVELAIVHGSERFR 93
Query: 340 STMEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLTELKPFVELAEKLGRLAVQL 399
+ I A + V V EL EL +L + +
Sbjct: 94 HFLRVVRDSPIRPVGA--------------DEGFVGMLVEYEL---TELLRELFGVTHER 136
Query: 400 VAGGSGVKTVKVSYASSRAPDDLDTRLLRAM 430
AG G K A + + T LL A
Sbjct: 137 PAGVRGTKLFPYLTDDEEAVEQIGTYLLAAQ 167
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 28.4 bits (64), Expect = 3.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 201 AVLGFGKVGSEVARRAKGLGMHVIAHD 227
V+G G + R G V+A D
Sbjct: 10 IVIGSEAAGVGLVRELTAAGKKVLAVD 36
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.9 bits (65), Expect = 3.8
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV 243
+ G+ + E R +G + V+A D + G + V
Sbjct: 14 ICGWSESTLECLRELRGSEVFVLAEDE-NVRKKVLRSGANFV 54
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Length = 88
Score = 27.2 bits (61), Expect = 4.3
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 515 VGSFEVDVSLEGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGV 574
+ F + + G D+ GM + ++ + N+ ++ A + +
Sbjct: 1 MTDFLAGIRIVG-------EDKNGMTNQITGVISKFDTNIR--TIVLNAKDGIFTCNLMI 51
Query: 575 D----EQPRK--ETLKKIGDV 589
++ + L+K+ V
Sbjct: 52 FVKNTDKLTTLMDKLRKVQGV 72
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center
for structural genomics of infectious diseases, CSGI;
1.80A {Vibrio cholerae}
Length = 441
Score = 29.0 bits (66), Expect = 4.6
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTVK------VSYASSRAPDDLD-TRLLRAMI 431
LT L PF++ ++L L L A G ++ + V Y P + + L +
Sbjct: 229 LTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDELPPQPSEYAKALLDRL 288
Query: 432 TKGL-----IEP 438
+ EP
Sbjct: 289 ERHRDLELIFEP 300
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate
synthesis, exopolysaccharide, C fibrosis; HET: UGA;
1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Length = 478
Score = 29.1 bits (66), Expect = 5.0
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 158 AAEHGIA---LLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLG--FGKVGS-- 210
A EHG + L A + N Q G L G+T A+ G F K +
Sbjct: 290 ADEHGQSLQILKAVSSVNATQKRVLADKIV----ARFGEDLTGRTFAIWGLAF-KPNTDD 344
Query: 211 -------EVARRAKGLGMHVIAHDPYAPADRARAI 238
E+ G + A+DP A + AR +
Sbjct: 345 MREAPSRELIAELLSRGARIAAYDPVA-QEEARRV 378
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 27.2 bits (60), Expect = 5.1
Identities = 9/60 (15%), Positives = 24/60 (40%)
Query: 431 ITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFA 490
++ + I ++VN V A ++GL+ +E + ++ L ++ +
Sbjct: 26 LSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLG 85
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.4 bits (64), Expect = 5.3
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 194 SLVGKTLAVLG-FGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATA 252
S + K + VLG G +G+EV + K + I+ D + + + S +E I +
Sbjct: 19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSFTIK-DSGEEEIKSV 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 28.6 bits (64), Expect = 5.5
Identities = 39/199 (19%), Positives = 62/199 (31%), Gaps = 39/199 (19%)
Query: 162 GIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGM 221
GI A + + + + + + V+ + + G+ + E R +G +
Sbjct: 83 GIGTFAVAVERLLEF--LINREQMKLMGLIDVAKSRHVV-ICGWSESTLECLRELRGSEV 139
Query: 222 HVIAHDP-------------------------YAPADRARAIGVDLVSFDEAIATADFIS 256
V+A D A ARA+ VDL S E I I
Sbjct: 140 FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIR 199
Query: 257 LHMPLTPATSKVLNDETFGKMKK-GVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT 315
++ E +++ G V VI + R++D G A DV
Sbjct: 200 KIDESVRIIAEAERYENIEQLRMAGAD--QVISPFVISGRLMSRSIDDGYEAMFVQDVLA 257
Query: 316 EEPP--------PADSKLV 326
EE P SKL
Sbjct: 258 EESTRRMVEVPIPEGSKLE 276
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A
{Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Length = 97
Score = 27.0 bits (59), Expect = 5.6
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 171 RNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA 230
A+A V + R K + LAVL +G V ++AR A+ + + A
Sbjct: 27 EKTAEA-VGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILTNKKRPA 85
Query: 231 PADRARAIGVD 241
+R+ I ++
Sbjct: 86 ATERSEQIQME 96
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.6 bits (63), Expect = 5.9
Identities = 17/144 (11%), Positives = 39/144 (27%), Gaps = 20/144 (13%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFIS 256
GK + +LG G V V +A + +++ +A A ++
Sbjct: 23 GKNVLLLGSGFVAQPVIDT--------LAAND----------DINVTVACRTLANAQALA 64
Query: 257 LHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTE 316
+ V +D K+ ++ + A+ + +
Sbjct: 65 KPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNVVKSAIRTKT--DVVTSSYIS 122
Query: 317 EPPPADSKLVQHERVTVTPHLGAS 340
+ +TV +G
Sbjct: 123 PALRELEPEIVKAGITVMNEIGLD 146
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.1 bits (62), Expect = 6.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 201 AVLGFGKVGSEVARRAKGLGMHVIA 225
++G+G +G +A + G + A
Sbjct: 4 GLIGYGAIGKFLAEWLERNGFEIAA 28
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Length = 443
Score = 28.7 bits (65), Expect = 6.5
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTV 409
+ +L+PF + L +L A G ++ V
Sbjct: 226 IIDLEPFDNAFALMAELVKELQADGHNIRHV 256
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A
{Helicobacter pylori} PDB: 3c5q_A*
Length = 425
Score = 28.6 bits (65), Expect = 7.0
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 379 LTELKPFVELAEKLGRLAVQLVAGGSGVKTV------KVSYASSRAPD--DLDTRLLRAM 430
L +L+P +E ++K+ ++A L+A G ++ VSY + D +L A+
Sbjct: 210 LLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSYENEETIKLYDYAQGILNAL 269
Query: 431 ITKGL---IEP 438
L EP
Sbjct: 270 QGLDLTIICEP 280
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural
genomics, PSI-2, Pro structure initiative; HET: MSE AMP;
1.79A {Escherichia coli k-12}
Length = 140
Score = 27.5 bits (62), Expect = 7.1
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGV 240
++G+G+VGS + + + ++ D R GV
Sbjct: 12 LVGYGRVGSLLGEKLLASDIPLVVIETSR-TRVDELRERGV 51
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 28.3 bits (62), Expect = 7.6
Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA--------DRARAIGVDLVSFDE-- 247
K++ +LG G V G+ V + + I +D+
Sbjct: 4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALD 63
Query: 248 -AIATADFI------SLHMPLTPA 264
+A D + + H + +
Sbjct: 64 AEVAKHDLVISLIPYTFHATVIKS 87
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd reductase,
NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2
PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A*
2vuu_A*
Length = 352
Score = 28.3 bits (63), Expect = 8.3
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIA--HDPYAPADRA--RAIGVDLVSFD 246
KT+AV+G G+ G+ + R A +G HV A H V L
Sbjct: 6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGP 59
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 26.9 bits (59), Expect = 8.4
Identities = 9/58 (15%), Positives = 24/58 (41%)
Query: 431 ITKGLIEPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESK 488
++ + I ++VN V A ++GL+ +E + ++ L ++ +
Sbjct: 35 LSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQPS 92
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 28.3 bits (64), Expect = 8.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
G+ + + G G +G + A+ +G+ V A D
Sbjct: 167 GQWVVISGIGGLGHVAVQYARAMGLRVAAVD 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.363
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,164,018
Number of extensions: 622763
Number of successful extensions: 2026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1868
Number of HSP's successfully gapped: 207
Length of query: 600
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 501
Effective length of database: 3,937,614
Effective search space: 1972744614
Effective search space used: 1972744614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)