RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 007512
(600 letters)
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 154 bits (390), Expect = 1e-44
Identities = 85/185 (45%), Positives = 121/185 (65%), Gaps = 1/185 (0%)
Query: 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213
N +AAEH +ALL A +R + ADAS++ W+R+ + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
+R G +V+A+DPY RA +G++L+S D+ +A ADFIS+H+P TP T+ +++ E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERVTV 333
K K GV I+N ARGG++DE AL A+ G V A LDVF EP DS L + +V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELAQVVV 179
Query: 334 TPHLG 338
TPHLG
Sbjct: 180 TPHLG 184
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 148 bits (374), Expect = 3e-42
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQ---RNKYVGVSLVGKTLAVLGFGKVGSE 211
TVA AE + LL AR + + ++ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 212 VARRAKGLGMHVIAHDPYAP--ADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVL 269
+A+RA+G M + D + +D A S D ++ + F SL+ P TP T
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 270 NDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHE 329
N T + +G ++N ARG ++D E +V AL++GR+A A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLP 180
Query: 330 RVTVTPHLGAS 340
+ PH+G++
Sbjct: 181 NTFLFPHIGSA 191
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 142 bits (357), Expect = 6e-40
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 4/187 (2%)
Query: 156 VAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYV--GVSLVGKTLAVLGFGKVGSEVA 213
++ AEH + ++ ++ RN + + G W V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIG--VDLVSFDEAIATADFISLHMPLTPATSKVLND 271
RR +H+ D + + + ++ D ++L+ PL P T ++ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 272 ETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPPPADSKLVQHERV 331
ET K+G I+N ARG + D +A+ RAL+SGR+A A DV+ +P P D
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 332 TVTPHLG 338
+TPH+
Sbjct: 181 GMTPHIS 187
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 136 bits (343), Expect = 6e-38
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 154 NTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVA 213
NT + AE I L + R V +A+A G + GK L ++G+G +G+++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
A+ LGM+V +D A V + + +D +SLH+P P+T ++ +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQ--HLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP----PADSKLVQHE 329
MK G +IN +RG V+D AL AL S +A AA+DVF EP P S L + +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 330 RVTVTPHLG 338
V +TPH+G
Sbjct: 179 NVLLTPHIG 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 122 bits (307), Expect = 7e-33
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 9/187 (4%)
Query: 159 AEHGIALLAAMARNVAQADASVKAGKWQRNK-------YVGVSLVGKTLAVLGFGKVGSE 211
A+ + + + R +++ G ++ + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 212 VARRAKGLGMHVIAHDPYAPADRARAIGVD-LVSFDEAIATADFISLHMPLTPATSKVLN 270
VA RAK G +V+ +DPY RA+G+ + + + + +D ++LH L ++N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 271 DETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP-PPADSKLVQHE 329
D T +M++G ++N ARGG++DE+AL +AL GR+ AALDV EP + L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 330 RVTVTPH 336
+ TPH
Sbjct: 184 NLICTPH 190
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 107 bits (268), Expect = 1e-27
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 14/193 (7%)
Query: 157 AAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRA 216
A AEH A + R D V + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 217 KGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDETFGK 276
+G G VI +D + G + S D+ AD ISLH+P PA ++NDE+ K
Sbjct: 63 EGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 277 MKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP-------------PADS 323
MK+ V I+NV+RG ++D +A++R LDSG++ A+DV+ E +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 324 KLVQHERVTVTPH 336
L+ V VTP
Sbjct: 182 DLIARPNVLVTPK 194
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 98.3 bits (244), Expect = 6e-25
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFE 116
S P VLIA+KL + + L + V ++L + DAL+VRS T V+ +V
Sbjct: 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 60
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
+ A +LK+V RAGVG+DNVD+ AAT G LVVNAPT+ + A A+ A + +A A
Sbjct: 61 A-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119
Query: 177 DASVKAGKW 185
V
Sbjct: 120 GEFVPDAVN 128
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 97.5 bits (241), Expect = 3e-24
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 153 ANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEV 212
A+ VA E +ALL A + + Q +K G + R+ + + G+ +AVLG G++G+ V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 213 ARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDE 272
+ LG V R S +EA+ A +PL T ++ +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 273 TFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFT-EEPPPADSKLVQHERV 331
M + +NV R V+D + ++R L A DV+ D++ V
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 332 TVTPHLG 338
TP +
Sbjct: 174 VATPWVA 180
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 91.6 bits (227), Expect = 1e-22
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN---LSPEELCTKISLCDALIVRSGTKVNRDV 114
K +LI L +A + E +V + ++ +E+ DAL++ K ++V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 115 FESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 175 QADAS 179
AD S
Sbjct: 121 GADMS 125
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 93.4 bits (230), Expect = 2e-22
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 16/198 (8%)
Query: 155 TVAAAEHGIALLAAMARNVAQADASVKAGKWQR-NKYVGVSLVGKTLAVLGFGKVGSEVA 213
A AE + + RN+ + A ++AG +++ ++G L +T+ V+G G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 214 RRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSKVLNDET 273
+ KG G VIA+DPY D VS ++ +D I LH+P + ++N+
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDF--DYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 274 FGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEPP-------------P 320
F MK G +IN AR +ID +A++ L SG++A +D + E P
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 321 ADSKLVQHERVTVTPHLG 338
+L+ V ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 84.7 bits (209), Expect = 3e-20
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 57 SKPTVLIAEKLGQAGLDLLNEFANVDCAY---NLSPEELCTKISLCDALIVRSGTKVNRD 113
K L+ E + Q L+ L + + L E+L I + +RS T + D
Sbjct: 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTED 62
Query: 114 VFESSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNV 173
V ++ +L +G +G + VDL AA + G V NAP ++T A E+ +A
Sbjct: 63 VINAA-EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKY 121
Query: 174 AQADASVKAG 183
+ +++ A
Sbjct: 122 SDNGSTLSAV 131
>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase
SerA {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 84.6 bits (209), Expect = 3e-20
Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 18/148 (12%)
Query: 377 EVLTELKPFVELAEKLGRLAVQLVAGGSGVKTVKVSYASSRAPDDLDTRLLRAMITKGLI 436
V E+ P+++L KLG LA L ++ V A + +LR +GL
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRGELA--AEEVEVLRLSALRGLF 58
Query: 437 EPISDVFVNLVNADYTAKQRGLRLTEERILLDGSPESPLEFIQVQIANVESKFASAISES 496
+ + V VNA A +RG+ + + S ++ V ++
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVG------------ADG 106
Query: 497 GEIKVEGRV--KDGVPHLTKVGSFEVDV 522
+ V G + + ++ D+
Sbjct: 107 SVVTVSGTLYGPQLSQKIVQINGRHFDL 134
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 82.8 bits (204), Expect = 2e-19
Identities = 23/129 (17%), Positives = 38/129 (29%), Gaps = 3/129 (2%)
Query: 58 KPTVLIAEKLGQAGLDLLNEFANVDCAYN--LSPEELCTKISLCDALIVRSGTKVNRDVF 115
K A + Y+ E D + T VF
Sbjct: 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVF 61
Query: 116 ES-SAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVA 174
E A +K + VG DN+D+ A ++G + N P A L + +
Sbjct: 62 EKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121
Query: 175 QADASVKAG 183
+ + S +
Sbjct: 122 KGETSTEVT 130
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 82.3 bits (203), Expect = 2e-19
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 4/130 (3%)
Query: 59 PTVLIAEKL-GQAGLDLLNEFANVDCAYNLSPEELCTKI-SLCDALIVRSGTKVNRDVFE 116
P V + + + +L + A V S +E+ K+ + ++ + R+ E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 117 SSAGRLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQA 176
L+++ R G G DN+D+ +A + G V N P A+ + + I + AR + +A
Sbjct: 62 K-FKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 177 DASVKAGKWQ 186
+
Sbjct: 120 ITGRIPDSLK 129
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 77.7 bits (191), Expect = 9e-18
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 73 DLLNEFANVDCAY--NLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG-RLKVVGRAG 129
+ + +V+ Y L E D ++V + ++ A + +
Sbjct: 18 EWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRN 77
Query: 130 VGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKW 185
VG+DN+D+A A E G + N P + H + + A + K +
Sbjct: 78 VGVDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDNNLELVEGKEAET 130
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 73.5 bits (180), Expect = 1e-15
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 11/115 (9%)
Query: 81 VDCAYNLSPEELCTKISLCDALIVRS--GTKVNRDVFESSAGRLKVVGRAGVGIDNVDLA 138
V + ++ D +I + + + + LK+ AG+G D+VDL
Sbjct: 72 VTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQ 130
Query: 139 AATEFGCLVVNAPTANTVAAAEH--------GIALLAAMARNVAQADASVKAGKW 185
+A + V N+ I R + V+ G
Sbjct: 131 SAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 65.7 bits (160), Expect = 3e-13
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 4/127 (3%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIAT 251
V + GK V G+G VG A+ +G G VI + A+ V+ +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT---TMDE 75
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINV-ARGGVIDEEALVRALDSGRVAQAA 310
A T ++ F +MK + N+ ID + L +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 311 LDVFTEE 317
+D + +
Sbjct: 136 VDRYRLK 142
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 63.1 bits (153), Expect = 9e-13
Identities = 17/160 (10%), Positives = 40/160 (25%), Gaps = 41/160 (25%)
Query: 61 VLIAEKLGQAGLDLLNEFANVDCAYNLSPEELCTKISLCDALIVRSGTKVNRDVFESSAG 120
+ + +L + L ++ + +L E +++ +
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAAL------------VSRITAEELAK-MP 49
Query: 121 RLKVVGRAGVGIDNVDLAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASV 180
RLK + G+D++ + V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 181 KAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLG 220
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 78
Score = 58.3 bits (141), Expect = 2e-11
Identities = 16/76 (21%), Positives = 34/76 (44%)
Query: 525 EGSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPRKETLK 584
+G ++ VD+PG +G +G++LG+ VN+ + A A + + +D+ +
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 585 KIGDVPAIEEFVFLKL 600
I + + L
Sbjct: 62 AIAAAVDAYKLEVVDL 77
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase,
regulatory (C-terminal) domain {Escherichia coli [TaxId:
562]}
Length = 84
Score = 54.0 bits (130), Expect = 5e-10
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 521 DVSLE---GSIILCRQVDQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQ 577
+VSL G ++ ++PG++ + I + VN++ + A + V+ I DE
Sbjct: 3 EVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADED 62
Query: 578 PRKETLKKIGDVPAI 592
++ L+ + +P
Sbjct: 63 VAEKALQAMKAIPGT 77
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 52.2 bits (125), Expect = 1e-08
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 192 GVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIA 250
+ GK + + G+G VG A KGLG V + A +A G ++V+ DE +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 251 TADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRAL 301
DF V+ E KMK + N+ D+E V L
Sbjct: 78 KGDFFITCTGNVD----VIKLEHLLKMKNNAVVGNIGHF---DDEIQVNEL 121
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 42.4 bits (99), Expect = 8e-05
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 168 AMARNVAQA-DASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
A R V + ++ + + KT AV GFG VG R G +A
Sbjct: 6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAV 65
Query: 227 D 227
Sbjct: 66 G 66
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 38.2 bits (88), Expect = 4e-04
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 193 VSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIAT 251
L + ++G G V AR G + + P A L +
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 252 ADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVA 287
S + + +N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 38.1 bits (88), Expect = 0.001
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 185 WQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPA-DRARAIGVDLV 243
+ + SL G ++V G G V + ++ G ++ D A A A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADA 86
Query: 244 SFDEAIATADFISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
AI + P A VLND T ++K V I A + D
Sbjct: 87 VAPNAIYGVT-CDIFAPC--ALGAVLNDFTIPQLKAKV-IAGSADNQLKDPRH 135
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 38.2 bits (88), Expect = 0.001
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI 63
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 36.2 bits (83), Expect = 0.007
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIA 225
K+ +LVGKT+A+ GFG V A++ LG +
Sbjct: 28 KHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 64
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 33.3 bits (76), Expect = 0.009
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA----IGVDLVSFDEAIATA- 252
K + VLG G++G + + + LG+ V A I ++ + E T
Sbjct: 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRQ 61
Query: 253 -----DFISLH 258
F++
Sbjct: 62 LARHPAFVNRD 72
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 35.5 bits (81), Expect = 0.010
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 194 SLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATAD 253
SL G T+ V G G VG +A A G ++ A A+ + + +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAVALEDVLST 82
Query: 254 FISLHMPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEA 296
+ P V+ E + V + A + DE A
Sbjct: 83 PCDVFAPCAM--GGVITTEVARTLDCSV-VAGAANNVIADEAA 122
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
transformylase PurT, N-domain {Escherichia coli [TaxId:
562]}
Length = 111
Score = 34.1 bits (78), Expect = 0.011
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLV--SFDEAIATADF 254
+ +LG G++G EVA + LG+ VIA D YA A A + + + A
Sbjct: 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP-AMHVAHRSHVINMLDGDALRRV 69
Query: 255 ISLHMP--LTPATSKVLNDETFGKMKKGVRIINVAR 288
+ L P + P + D ++G+ ++ AR
Sbjct: 70 VELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR 105
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 34.5 bits (79), Expect = 0.013
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 201 AVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADR---------ARAIGVDLVSFDEAIAT 251
+LG G VG+E A+ A GLG V D + + + A+A
Sbjct: 36 VILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAE 95
Query: 252 ADFI--SLHMPLTPATSKVLNDETFGKMKKGVRIINVA--RGGVI 292
AD + ++ +P A ++ +M+ G I++VA +GG +
Sbjct: 96 ADLLIGAVLVPGRRAP-ILVPASLVEQMRTGSVIVDVAVDQGGCV 139
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 34.8 bits (78), Expect = 0.013
Identities = 17/162 (10%), Positives = 45/162 (27%), Gaps = 7/162 (4%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYA-PADRARAIGVDLVSFDEAIATADFISLH 258
+ V+G G +G+ +A + G ++I ++A + + + +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62
Query: 259 MPLTPATSKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALDVFTEEP 318
+ ++ + + +VA E + +
Sbjct: 63 LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGI 122
Query: 319 PPADSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVVGAL 360
A+ L + +TP + +V+ L
Sbjct: 123 DGAEENLFVNAPYVLTPTEYTDPE------QLACLRSVLEPL 158
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 234
Score = 34.8 bits (79), Expect = 0.019
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARR-AKGLGMHVIAHDPY 229
+G+ T+AV GFG VG A ++ LG V+A
Sbjct: 23 DVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS 64
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 33.4 bits (75), Expect = 0.029
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHDPY 229
K AV+G G+ G + + +G V+A D
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 31.7 bits (71), Expect = 0.13
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 200 LAVLGFGKVGSEVARR--AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISL 257
+ +G G +G +++ G + V +P A AD A + D I
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 258 HMPLTPATSKVL--NDETFGKMKKGVRIINVA 287
+P +P +V + K G +I+++
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMS 94
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 31.1 bits (69), Expect = 0.20
Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 6/149 (4%)
Query: 198 KTLAVLGFGKVGSEVAR--RAKGLGMHVIAHD--PYAPADRARAIGVDLVSFDEAIATAD 253
+ + ++G G +G A+ R G + +D P + + +D + A
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 254 FISLHMPLTPAT-SKVLNDETFGKMKKGVRIINVARGGVIDEEALVRALDSGRVAQAALD 312
M +P + + + + + + + L L V +
Sbjct: 62 SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIA 121
Query: 313 VFTEEPP-PADSKLVQHERVTVTPHLGAS 340
+ + L + ++V +TP
Sbjct: 122 GTEKSGVEYSLDNLYEGKKVILTPTKKTD 150
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 30.0 bits (67), Expect = 0.21
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
GK + ++G G G G+ D
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMD 35
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 71
Score = 29.2 bits (66), Expect = 0.21
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 535 DQPGMIGTVGSILGSENVNVSFMSVGRVAPRKHAVMAIGVDEQPR-KETLKKIG 587
+ PG + V L +E V + +M A A + I + E LK+
Sbjct: 8 NVPGALAKVLGFLSAEGVFIEYMYS--FANNNVANVVIRPSNMDKCIEVLKEKK 59
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 29.2 bits (65), Expect = 0.25
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 81 VDCAYNLSPEELCTKISLCD 100
+ ++ P+E+C + CD
Sbjct: 59 IQMMMHMQPKEICALVGFCD 78
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 30.8 bits (68), Expect = 0.36
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHM 259
+ V+G G G A ++ LG+ + Y + A+G ++ + A S +
Sbjct: 6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter sp.,
py2 [TaxId: 35809]}
Length = 261
Score = 29.9 bits (66), Expect = 0.74
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHV 223
+G G G + + +G
Sbjct: 45 AIFIGGGAAGRFGSAYLRAMGGRQ 68
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 29.5 bits (65), Expect = 0.75
Identities = 5/36 (13%), Positives = 9/36 (25%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 237
V G + + G +V D +
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL 43
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 29.7 bits (65), Expect = 0.75
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
L ++G G G A+ A V+
Sbjct: 6 LIIIGGGSGGLAAAKEAAKFDKKVM 30
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase
(KARI) {Pseudomonas aeruginosa [TaxId: 287]}
Length = 182
Score = 29.4 bits (66), Expect = 0.76
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 195 LVGKTLAVLGFGKVGSEVARRAKGLGMHVIA--HDPYAPADRARAIGVDLVSFDEAIATA 252
+ GK +A++G+G G A K G+ V A +A A G+ + A+A A
Sbjct: 14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAA 73
Query: 253 DFISLHMPLTPATSKVLNDETFGKMKKGVRII 284
D + + P ++ +E +KKG +
Sbjct: 74 DVVMILTP-DEFQGRLYKEEIEPNLKKGATLA 104
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 29.6 bits (65), Expect = 0.81
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
L ++G G G A RA LG+ +
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTV 32
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 29.5 bits (65), Expect = 0.86
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHV 223
V+G G G ARRA LG
Sbjct: 6 YLVIGGGSGGLASARRAAELGARA 29
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 29.5 bits (65), Expect = 0.90
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
+ VLG G G A A G+ V
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVA 33
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 29.7 bits (66), Expect = 1.1
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 211 EVARRAK---GLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFISLHMPLTPATSK 267
++ + + VD E I D I ++ L
Sbjct: 254 DLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLN 313
Query: 268 VLNDETFGKMKKGVRII 284
++ K G +II
Sbjct: 314 KKVEKILQTAKVGCKII 330
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 29.1 bits (64), Expect = 1.1
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHV 223
+G G G RA G
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKC 28
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 239
Score = 29.4 bits (65), Expect = 1.2
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 194 SLVGKTLAVLGFGKVGSEVARR 215
+L GKT+A+ G+G G +A+
Sbjct: 29 TLKGKTIAIQGYGNAGYYLAKI 50
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 223
Score = 29.0 bits (64), Expect = 1.2
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
V+G G G A RA LG V
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVT 30
>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
{Trypanosoma cruzi [TaxId: 5693]}
Length = 238
Score = 29.2 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIA 225
L V+G G G E A A L +A
Sbjct: 6 LVVIGAGSGGLEAAWNAATLYKKRVA 31
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 28.3 bits (62), Expect = 1.4
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDP 228
+ G G+VG +A+ G ++ D
Sbjct: 5 IAGIGRVGYTLAKSLSEKGHDIVLIDI 31
>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 124
Score = 28.2 bits (62), Expect = 1.5
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 396 AVQLVAGGSGVK----TVKVSYASS 416
AV+L G + +VK+S +S
Sbjct: 1 AVKLQQSGPELVRPGTSVKLSCKTS 25
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.9 bits (63), Expect = 1.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHV 223
L V+G G G ARRA V
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKV 27
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 221
Score = 28.6 bits (63), Expect = 1.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
+ ++G G G A +A LG
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTT 30
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 27.9 bits (61), Expect = 2.8
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVI 224
+ ++G G G A +A LG +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTA 32
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 28.1 bits (61), Expect = 2.9
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 198 KTLAVLG-FGKVGSEVARRAKGLGMHVIA--HDPYAPADRA--RAIGVDLVSFD 246
KT+AV+G G+ G+ + R A +G HV A H V L
Sbjct: 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGP 57
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 26.1 bits (57), Expect = 3.0
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 86 NLSPEELCTKISLC 99
+SPE +C+ + LC
Sbjct: 64 EVSPELVCSMLHLC 77
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB
{Escherichia coli [TaxId: 562]}
Length = 182
Score = 27.6 bits (60), Expect = 3.2
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 189 KYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMHVIAH 226
K G + GKT+ +LG G + + + G+ I
Sbjct: 10 KESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKL 47
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide
transhydrogenase dI component {Rhodospirillum rubrum
[TaxId: 1085]}
Length = 183
Score = 27.6 bits (61), Expect = 3.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHD 227
V G G G + AK LG V+A D
Sbjct: 34 VFGVGVAGLQAIATAKRLGAVVMATD 59
>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
maritima [TaxId: 2336]}
Length = 229
Score = 27.7 bits (60), Expect = 3.5
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 210 SEVARRAKGLGMHVIA---HDPYAPADRARAIGVDLVSFDEAIATADFIS 256
EV G+ V++ H R + + D++
Sbjct: 22 GEVVDLFGKHGVDVVSITDHIVDRRTLEQRKRNGEPLGAITEDKFQDYLK 71
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 27.6 bits (61), Expect = 3.6
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 16/72 (22%)
Query: 485 VESKFASAISESGEIKVEGRVKDGVPHLTKVGSFEVDVSLEGSIILCRQVDQPGMIGTVG 544
+ F +S+ EIK E +++ G +E++++ L R+V
Sbjct: 5 GDKAFVDFLSD--EIKEERKIQKHKTLPKMSGGWELELN-GTEAKLVRKV---------- 51
Query: 545 SILGSENVNVSF 556
E + V+F
Sbjct: 52 ---AGEKITVTF 60
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 27.6 bits (60), Expect = 3.6
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 198 KTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
KT AVLG G G A G V+A D
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD 31
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 27.1 bits (59), Expect = 3.7
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 198 KTLAVLGFGKVGSEVARR--AKGLGMHVIAHDPYAPADRARAIGVDLVSFDEAIATADFI 255
K +A +G G +G+ +A G ++V A A S +A+ AD +
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVV 61
Query: 256 SLHMPLTPATSKVLNDET--FGKMKKGVRIINVA 287
+P + + D+ + G ++ +
Sbjct: 62 ISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECS 95
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 27.3 bits (59), Expect = 4.5
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHVIAHD 227
K++ +LG G V G+ V
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVAC 32
>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase
{Crithidia fasciculata [TaxId: 5656]}
Length = 240
Score = 27.2 bits (59), Expect = 4.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 200 LAVLGFGKVGSEVARRAKGLGMHVIA 225
L V+G G G E A L +A
Sbjct: 6 LVVIGAGSGGLEAGWNAASLHKKRVA 31
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 26.4 bits (57), Expect = 5.1
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 202 VLGFGKVGSEVARRAKGLGMHVIAHDP 228
+ G+ + E R +G + V+A D
Sbjct: 5 ICGWSESTLECLRELRGSEVFVLAEDE 31
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase
(ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus
[TaxId: 274]}
Length = 210
Score = 26.8 bits (59), Expect = 6.3
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 8/36 (22%)
Query: 85 YNLSPEELC--------TKISLCDALIVRSGTKVNR 112
+N L ++ L+V + R
Sbjct: 16 WNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGR 51
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide
dehydrogenase, FCSD, flavin-binding subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 186
Score = 26.3 bits (56), Expect = 8.8
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 197 GKTLAVLGFGKVGSEVARRAKGLGMHV 223
G+ + V+G G G+ A+ K +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSI 28
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.3 bits (58), Expect = 9.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 137 LAAATEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKW 185
+AA FG ++ P A +A + AL AA+A +A K G W
Sbjct: 1 VAAPVAFGFPALSTPGAGGLAVSISAGALSAAIADIMAALKGPFKFGLW 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.363
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,055,589
Number of extensions: 97027
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 85
Length of query: 600
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 510
Effective length of database: 1,171,896
Effective search space: 597666960
Effective search space used: 597666960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)