Query 007513
Match_columns 600
No_of_seqs 375 out of 2539
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 11:38:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02443 acyl-coenzyme A oxida 100.0 2E-106 4E-111 895.5 64.5 599 1-599 1-600 (664)
2 KOG0136 Acyl-CoA oxidase [Lipi 100.0 4E-106 8E-111 840.2 49.8 587 1-598 9-607 (670)
3 PTZ00460 acyl-CoA dehydrogenas 100.0 1E-101 3E-106 855.5 61.5 575 5-599 2-586 (646)
4 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 1E-98 2E-103 765.9 46.8 582 5-598 19-626 (661)
5 PLN02312 acyl-CoA oxidase 100.0 3.8E-97 8E-102 823.3 59.4 566 11-598 46-647 (680)
6 PLN02636 acyl-coenzyme A oxida 100.0 4.2E-97 9E-102 824.9 59.6 574 11-599 47-652 (686)
7 cd01150 AXO Peroxisomal acyl-C 100.0 1.8E-96 4E-101 816.6 61.3 557 6-598 2-574 (610)
8 KOG0141 Isovaleryl-CoA dehydro 100.0 8.4E-63 1.8E-67 470.4 22.0 360 25-439 39-419 (421)
9 KOG0139 Short-chain acyl-CoA d 100.0 2.3E-63 5.1E-68 482.5 16.8 342 28-427 38-398 (398)
10 KOG0140 Medium-chain acyl-CoA 100.0 2.5E-61 5.3E-66 460.2 21.0 360 24-441 25-406 (408)
11 TIGR03203 pimD_small pimeloyl- 100.0 3.6E-54 7.7E-59 456.2 29.6 353 27-435 4-374 (378)
12 PRK09463 fadE acyl-CoA dehydro 100.0 1.8E-51 3.9E-56 459.2 45.2 499 13-571 63-622 (777)
13 cd01161 VLCAD Very long chain 100.0 1.4E-50 3E-55 434.1 32.1 366 18-440 20-407 (409)
14 KOG0137 Very-long-chain acyl-C 100.0 5.6E-50 1.2E-54 413.4 34.8 473 70-590 112-621 (634)
15 cd01162 IBD Isobutyryl-CoA deh 100.0 2.2E-50 4.8E-55 428.1 32.3 354 28-439 2-374 (375)
16 cd01151 GCD Glutaryl-CoA dehyd 100.0 5.4E-50 1.2E-54 426.7 32.4 353 26-439 12-382 (386)
17 cd01160 LCAD Long chain acyl-C 100.0 7.1E-50 1.5E-54 424.0 32.3 352 29-437 1-371 (372)
18 PRK03354 crotonobetainyl-CoA d 100.0 7.9E-50 1.7E-54 424.3 32.3 359 26-441 4-379 (380)
19 cd01157 MCAD Medium chain acyl 100.0 7.4E-50 1.6E-54 424.7 31.9 355 28-439 2-377 (378)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.8E-48 3.9E-53 433.3 42.2 318 69-433 110-465 (774)
21 PLN02526 acyl-coenzyme A oxida 100.0 1.5E-49 3.2E-54 426.0 31.9 366 14-440 13-399 (412)
22 PRK12341 putative acyl-CoA deh 100.0 2.7E-49 5.9E-54 420.5 32.9 356 27-440 5-379 (381)
23 PLN02519 isovaleryl-CoA dehydr 100.0 2.8E-49 6.1E-54 423.2 32.7 359 26-439 25-402 (404)
24 cd01156 IVD Isovaleryl-CoA deh 100.0 3.2E-49 7E-54 419.6 31.8 355 28-439 3-376 (376)
25 PTZ00461 isovaleryl-CoA dehydr 100.0 3E-49 6.5E-54 423.7 31.3 354 26-440 36-408 (410)
26 TIGR03204 pimC_large pimeloyl- 100.0 4.5E-49 9.7E-54 419.9 30.8 360 26-439 3-394 (395)
27 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 6.9E-49 1.5E-53 416.2 31.0 350 28-436 2-370 (372)
28 KOG0138 Glutaryl-CoA dehydroge 100.0 8.9E-49 1.9E-53 373.0 22.2 355 27-440 55-427 (432)
29 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.4E-47 2.9E-52 409.2 32.5 359 31-438 3-393 (394)
30 cd01158 SCAD_SBCAD Short chain 100.0 3.5E-47 7.5E-52 403.7 31.0 354 29-439 1-373 (373)
31 COG1960 CaiA Acyl-CoA dehydrog 100.0 5.2E-47 1.1E-51 405.0 30.5 359 29-441 7-390 (393)
32 PLN02876 acyl-CoA dehydrogenas 100.0 4.2E-46 9.1E-51 429.7 32.3 289 106-440 525-819 (822)
33 PTZ00456 acyl-CoA dehydrogenas 100.0 1E-45 2.3E-50 409.0 28.7 341 70-438 102-479 (622)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 5.6E-45 1.2E-49 379.7 31.3 326 29-435 1-327 (327)
35 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.4E-45 5.3E-50 390.1 28.5 350 29-438 1-379 (380)
36 cd01154 AidB Proteins involved 100.0 1.2E-44 2.7E-49 388.2 32.4 302 97-438 111-417 (418)
37 PRK11561 isovaleryl CoA dehydr 100.0 2.1E-44 4.6E-49 390.0 29.2 290 105-439 139-441 (538)
38 cd01153 ACAD_fadE5 Putative ac 100.0 9.4E-44 2E-48 380.9 30.3 337 70-432 39-400 (407)
39 PTZ00457 acyl-CoA dehydrogenas 100.0 2.6E-39 5.6E-44 348.1 42.6 420 71-589 54-515 (520)
40 cd01163 DszC Dibenzothiophene 100.0 3.3E-41 7.2E-46 358.2 27.4 328 70-438 25-372 (377)
41 cd01159 NcnH Naphthocyclinone 100.0 1.2E-36 2.7E-41 322.3 24.4 326 70-439 25-370 (370)
42 KOG1469 Predicted acyl-CoA deh 100.0 2.4E-36 5.3E-41 284.0 18.6 287 109-440 91-383 (392)
43 PF01756 ACOX: Acyl-CoA oxidas 99.9 3E-22 6.4E-27 190.9 15.9 123 475-598 1-128 (187)
44 TIGR02309 HpaB-1 4-hydroxyphen 99.9 2.7E-20 5.8E-25 200.4 24.5 248 111-405 119-391 (477)
45 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 2.7E-20 5.9E-25 171.1 17.9 145 275-438 6-150 (150)
46 PF14749 Acyl-CoA_ox_N: Acyl-c 99.5 6E-14 1.3E-18 124.7 11.3 116 17-132 1-125 (125)
47 PF02770 Acyl-CoA_dh_M: Acyl-C 99.4 2.6E-13 5.7E-18 100.4 5.2 51 134-192 1-51 (52)
48 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 1.8E-11 4E-16 110.2 13.4 130 285-425 1-132 (134)
49 COG2368 Aromatic ring hydroxyl 98.6 4.5E-06 9.8E-11 87.4 19.1 252 113-407 125-401 (493)
50 TIGR02310 HpaB-2 4-hydroxyphen 98.5 8.4E-06 1.8E-10 88.3 20.5 240 118-400 137-398 (519)
51 PF02771 Acyl-CoA_dh_N: Acyl-C 98.4 2.2E-07 4.9E-12 80.7 2.9 94 28-130 1-113 (113)
52 PF11794 HpaB_N: 4-hydroxyphen 97.3 0.0014 3.1E-08 65.2 10.5 124 117-255 123-263 (264)
53 PTZ00457 acyl-CoA dehydrogenas 84.6 10 0.00022 42.1 11.8 86 299-405 418-503 (520)
54 PF03241 HpaB: 4-hydroxyphenyl 83.3 23 0.0005 34.1 12.5 76 323-405 44-119 (205)
55 KOG0137 Very-long-chain acyl-C 76.4 33 0.00072 37.8 11.9 68 322-400 536-603 (634)
56 PF02607 B12-binding_2: B12 bi 31.2 1.3E+02 0.0029 23.4 5.5 38 560-597 42-79 (79)
57 PRK09463 fadE acyl-CoA dehydro 25.6 6.3E+02 0.014 29.7 11.5 98 322-439 562-662 (777)
58 PF10799 YliH: Biofilm formati 23.1 60 0.0013 27.6 2.0 26 572-597 30-55 (127)
59 COG1902 NemA NADH:flavin oxido 22.5 48 0.001 34.9 1.7 64 383-451 154-219 (363)
No 1
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.9e-106 Score=895.46 Aligned_cols=599 Identities=87% Similarity=1.358 Sum_probs=543.2
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHcc
Q 007513 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELR 80 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (600)
|.|+.+|++||++++||+++|..+|+|+++..+.|+.+++++.++|+|...+...+++++.++....+..++.+.+.++|
T Consensus 1 ~~~~~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~sr~e~~~~~~~~~~~~~~~~~~~~ 80 (664)
T PLN02443 1 MEGVDHLAGERNKAQFDVDAMKIVWAGSRHAFEVSDRMARLVASDPVFSKDNRTRLSRKELFKNTLRKAAHAWKRIIELR 80 (664)
T ss_pred CCchHHHHHHHhcCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccCCCcccCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999999999999999999999999999999999999998766779999999999988888888888999
Q ss_pred CCHHHHHHHHhhcCCchhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCC
Q 007513 81 LSEEEASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTD 160 (600)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~ 160 (600)
|...........++.+.++.+|+.+|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||++|+++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~ 160 (664)
T PLN02443 81 LTEEEAGKLRSFVDEPGYTDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTD 160 (664)
T ss_pred CCchhHHHHHHhcccceeeeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCC
Confidence 87654444444556667788999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccce
Q 007513 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNG 240 (600)
Q Consensus 161 ~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~ 240 (600)
+||||||+++|+||||+|++..||+++|+||++++++++|+++|+||+||+++|.+.|||+++++++|+|.+++++.|||
T Consensus 161 efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng 240 (664)
T PLN02443 161 EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNG 240 (664)
T ss_pred EEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcce
Confidence 99999999999999999955899999999999888888999999999999999999999999999999993334569999
Q ss_pred eEEecceecCcCcccc-cccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC
Q 007513 241 VLRFEHVRIPRNQMLM-VSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGP 319 (600)
Q Consensus 241 ~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~ 319 (600)
.|.|||||||++++|+ +++|+++|.+..+..+...+++.|..+|+.+++.++|++++|+++|++|+.+|+|||.+.+.+
T Consensus 241 ~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~ 320 (664)
T PLN02443 241 FLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGP 320 (664)
T ss_pred EEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCcc
Confidence 9999999999999999 999988999987655434788999999999999999999999999999999999999976667
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 007513 320 ETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCG 399 (600)
Q Consensus 320 ~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~G 399 (600)
|.|+++||.+|++|+|+++.+++++++.+++++.+++.......++.....+.|..++++|++++|.+.+++++|+|+||
T Consensus 321 e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cG 400 (664)
T PLN02443 321 ETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCG 400 (664)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88999999999999999999999999999999998865544434443444568889999999999999999999999999
Q ss_pred cccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCccccCCCCCH
Q 007513 400 GHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 479 (600)
Q Consensus 400 G~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 479 (600)
|+||+++++++++++|++..+|+||+|+++++++|+++++.+.+..+++++.++..||.+............+..+|+++
T Consensus 401 G~Gy~~~~~l~~l~~d~~~~~t~EGdn~Vl~~~iar~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 480 (664)
T PLN02443 401 GHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVSQLGSGKKPVGTTAYMGRVQHLLQCRCGVQTAEDWLNP 480 (664)
T ss_pred CccccccCcHHHHHhhhhcceeecCcHHHHHHHHHHHHHHHHHHhhcCCCCcchHHHHhhhhhhhcccccccccccccCH
Confidence 99999999999999999999999999999999999999999988878888888889997665444333333456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 007513 480 SAILEAFEARAIRMSVACAQNLSKFTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYA 559 (600)
Q Consensus 480 ~~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~l~~la~a~~~~~~l~~f~~~v~~~~~~~~~~~vL~~l~~L~a 559 (600)
++++++|++|+.+++..++++++.+.+..++||+++++++++|+||++++++++|+++|++..++++++++|.+||.||+
T Consensus 481 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~~~~~f~~~~~~~~~~~~~~~~L~~l~~L~~ 560 (664)
T PLN02443 481 SVVLEAFEARAARMAVTCAQNLSKFENQEAGFQELSADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKKQLQNLCYIYA 560 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999998777778999999999999999999999999999999863458899999999999999
Q ss_pred HHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007513 560 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 560 L~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~~ 599 (600)
|+.|+++++||+++||||++|++.|++.|.+||.+|||+.
T Consensus 561 l~~i~~~~~~fl~~~~ls~~~~~~i~~~i~~l~~~lrp~a 600 (664)
T PLN02443 561 LYLLHKHLGDFLSTGCITPKQASLANDQLRSLYSQVRPNA 600 (664)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 9999999999999999999999999999999999999973
No 2
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-106 Score=840.17 Aligned_cols=587 Identities=51% Similarity=0.792 Sum_probs=545.6
Q ss_pred CCCccchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCC-CCcccCCCHHHHHHHHHHHHHHHHHHHHHc
Q 007513 1 MDGVDQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFR-KDNRAMLSRKELFKNTLRKAAYAWKRIIEL 79 (600)
Q Consensus 1 ~~~~~~l~~~r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (600)
+|| ||++||.+++||+++|..+|+|++|....|+++++.+.++|.|. ..+...+++++.+....++...+++.+.++
T Consensus 9 ~Np--dl~~ER~~AtFd~e~~~~~~~Gg~e~~~~rr~i~~~v~~dp~l~~~~~~~~~sr~E~~~~~~Rk~~~~~~~~~el 86 (670)
T KOG0136|consen 9 DNP--DLQKERAKATFDVEDMAAVWAGGEERLKRRREIEDLVASDPELQDKKPLPFMSREERYENTVRKLARLTKKMREL 86 (670)
T ss_pred CCh--HHHHHHhhccCCHHHHHHHHhcCHHHHHHHHHHHHHHhcChhhcccCcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467 99999999999999999999999999999999999999999998 445578999999999998888888888888
Q ss_pred cCCHHH-----HHHHHhhcCCchhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEE
Q 007513 80 RLSEEE-----ASMLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTAT 154 (600)
Q Consensus 80 g~~~~~-----~g~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~ 154 (600)
++.... +.....+...+.|+.+|++||.++|...||+||.++||++..+.+++||||+||.|||+|+++++|||+
T Consensus 87 ~~~~d~~~~~~~~~~~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~At 166 (670)
T KOG0136|consen 87 QDNTDNENKLLGLLARVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTAT 166 (670)
T ss_pred HhcCcchhhhhHHHhhccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeee
Confidence 774221 222233344588999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCc
Q 007513 155 FDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAY 234 (600)
Q Consensus 155 ~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~ 234 (600)
||+.+++||||||+.++.|||++++|+.|+|++|+|+++++|+++|+|.|+||+||++||.+.|||+|+|+++|+| +
T Consensus 167 yD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg---~ 243 (670)
T KOG0136|consen 167 YDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMG---F 243 (670)
T ss_pred ecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCcccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CcccceeEEecceecCcCcccc-cccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 007513 235 NTMDNGVLRFEHVRIPRNQMLM-VSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 313 (600)
Q Consensus 235 ~~~~~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg 313 (600)
+|.|||++.|||||||+++||+ +++|.++|.|..++.++ ..+++|...|..++..+.-.+.+|++||+||+..|+||.
T Consensus 244 ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~-l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~ 322 (670)
T KOG0136|consen 244 NGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPK-LGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSE 322 (670)
T ss_pred cCCccceeeecceeechHhhhhhhheecCCCccccCCccc-cceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999 99999999999988776 899999999999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHH
Q 007513 314 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 393 (600)
Q Consensus 314 ~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~ 393 (600)
..++.+|++|+|||++|+||.|.+|..||.++++.++.++|....+++..++.+.++++|++++++|+.+||.+.+.+++
T Consensus 323 i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~ 402 (670)
T KOG0136|consen 323 IRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQ 402 (670)
T ss_pred CCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHH
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCcccc
Q 007513 394 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 473 (600)
Q Consensus 394 ~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 473 (600)
||+.||||||++.++++.+|-.+.+.|||||+|.||+.|+||+|+|.+.+..+|+++.++..|+....... ......
T Consensus 403 ~R~aCGGHGYs~~Sglp~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~~~~~sgk~l~~~v~yl~~~~~~~---~~~~~~ 479 (670)
T KOG0136|consen 403 CRLACGGHGYSQASGLPEIYGVAVGACTYEGENTVLLLQVARFLVKSYAQVLSGKSLSPTVAYLAASALKP---QLISGA 479 (670)
T ss_pred HHHhcCCccchhhcCCccceeeeeeeeeeeccceeehHHHHHHHHHHHHHHhcCCCCCCchhhhhhcccCc---cccccc
Confidence 99999999999999999999999999999999999999999999999999999998888999987544321 112234
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 007513 474 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 549 (600)
Q Consensus 474 ~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~l~~f~~~v~~~~~~~~~~~ 549 (600)
.+|.+ + ++++|++++.+++..+.++|.+ +.+.+.+||.++++|+++|++|+++++++.|+++|++...++.+++
T Consensus 480 ~~~~~-e-~~~a~e~~A~r~~~~a~~~l~~~~~~~~~~e~A~N~~sv~L~~Aa~~H~~~~vvk~f~~kv~~~~~~~~vk~ 557 (670)
T KOG0136|consen 480 GDWLN-E-YVEAFEHRAARQVWIAAENLLKLMSSGESQEVAWNLTSVELTRAARAHCRLFVVKTFLEKVEKHISDPAVKE 557 (670)
T ss_pred cchhH-H-HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 56666 5 9999999999999999988644 5677899999999999999999999999999999997456789999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhc-CCCCHHHHHHHHHHHHHHHHhhcCc
Q 007513 550 ILEILCHIYALHLVHKHLGDFVST-GCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~l~~L~aL~~i~~~~~~fl~~-~~ls~~q~~~i~~~~~~l~~~lr~~ 598 (600)
||.+||.||+++.|.+++++|+.. +|+|+.|++.++.++.+++++||||
T Consensus 558 vL~~L~~Ly~~y~il~~~g~fl~~~~~mt~~q~~~v~~~l~~lL~~iRpn 607 (670)
T KOG0136|consen 558 VLKNLLELYLLYEILKNSGDFLRFNNFMTDTQLDQVRDQLYELLTKIRPN 607 (670)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999998 9999999999999999999999997
No 3
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-101 Score=855.52 Aligned_cols=575 Identities=33% Similarity=0.545 Sum_probs=508.7
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHccCCH
Q 007513 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNR-AMLSRKELFKNTLRKAAYAWKRIIELRLSE 83 (600)
Q Consensus 5 ~~l~~~r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 83 (600)
++|++||++++||+++|..+|+|++|+.+.+..+++++.++|.|..... ..++++++++....+...+.+.. + ++
T Consensus 2 ~~l~~eR~~~~f~~~~l~~~l~gg~~~~~~~~~~~~~~~~dp~f~~~~~~~~lsr~e~~~~~~~k~~~~~~~~---~-~~ 77 (646)
T PTZ00460 2 QMLEEARKQVQFPVLEMTHLLYGNKEQFETFLERQKFIDNEPMFKVHPDYYNWSRQDQILLNAEKTREAHKHL---N-LA 77 (646)
T ss_pred hhHHHhhccCCCCHHHHHHHHhCCHHHHHHHHHHHHHHhcCcccccCCCcccCCHHHHHHHHHHHHHHHHHHc---C-ch
Confidence 5799999999999999999999999999999999999999999987633 46899999998887777766653 2 12
Q ss_pred HHHHHHHhhc--CCchhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCe
Q 007513 84 EEASMLRSSV--DEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDE 161 (600)
Q Consensus 84 ~~~g~~~~~~--~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~ 161 (600)
+..-....++ +.+.++.+|+++|+++|..+||+||+++|||++.+|+++||||+|||+||||+++++|||++|+++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~de 157 (646)
T PTZ00460 78 NPNYYTPNLLCPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNE 157 (646)
T ss_pred hhhHHhhhhcccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCE
Confidence 2111112233 44567889999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCccccee
Q 007513 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (600)
Q Consensus 162 ~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~ 241 (600)
||||||+++|+|+||+|+|..||+++|+||++++++++|+++|+||+||.++|.+.|||+++++++|+| +++.+|+.
T Consensus 158 fvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G---~~~~dng~ 234 (646)
T PTZ00460 158 FVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMG---YAVKDNGF 234 (646)
T ss_pred EEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccC---cCCCCceE
Confidence 999999999999999986789999999999988778899999999999999999999999999999999 99999999
Q ss_pred EEecceecCcCcccc-cccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCC
Q 007513 242 LRFEHVRIPRNQMLM-VSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPE 320 (600)
Q Consensus 242 v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~ 320 (600)
|.|||||||++++|+ +++|+++|.|..++..+ ..+..|..+|+.+++.++|++++|+++|++|+++|+|||++ +++|
T Consensus 235 l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~-~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~-~~~E 312 (646)
T PTZ00460 235 LSFDHYRIPLDSLLARYIKVSEDGQVERQGNPK-VSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTND-NKQE 312 (646)
T ss_pred EEeceEEECHHHhCCcccccCCCCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCC-CCCC
Confidence 999999999999999 99998889876654344 77889999999999999999999999999999999999974 4569
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 007513 321 TQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 321 ~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG 400 (600)
.||++||++|++|+||++.+++++++++++++++++........+....++.|..++++|++++|.+.+++++|+|+|||
T Consensus 313 ~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG 392 (646)
T PTZ00460 313 NSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGG 392 (646)
T ss_pred CcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999998765444333333345678999999999999999999999999999
Q ss_pred ccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCC-CCCccccccccchhHhhhhcCCccccCCCCCH
Q 007513 401 HGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYG-NMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNP 479 (600)
Q Consensus 401 ~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~-~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~ 479 (600)
+||++++++++++||++..+|+||+|+++++++|+.+++.+.+..++ +.+.++.+||.+.... ..++.++
T Consensus 393 ~Gy~~~~~l~~~~rda~~~~t~eG~n~vl~~~iar~ll~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~ 463 (646)
T PTZ00460 393 HGYAHYSGLPAIYFDMSPNITLEGENQIMYLQLARYLLKQLQHAVQKPEKVPEYFNFLSHITEK---------LADQTTI 463 (646)
T ss_pred ccccccCcHHHHHHHhccceeecCcHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHhhhh---------ccccCCh
Confidence 99999999999999999999999999999999999999998876544 3445577788654211 2245667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 007513 480 SAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAE-LAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEIL 554 (600)
Q Consensus 480 ~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~-~~~~l~~la~a~~~~~~l~~f~~~v~~~~~~~~~~~vL~~l 554 (600)
+++.++|++|+.+++..+++++++ +.+.+++||+ ++++++++|+||++++++++|+++|++ + +++++++|.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~awn~~~~~~l~~~a~ah~~~~~~~~f~~~i~~-~-~~~~~~vL~~l 541 (646)
T PTZ00460 464 ESLGQLLGLNCTILTIYAAKKIMDHINTGKDFQQSWDTKSGIALASAASRFIEYFNYLCFLDTINN-A-NKSTKEILTQL 541 (646)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CHHHHHHHHHH
Confidence 889999999999998888777653 4566789999 799999999999999999999999986 4 78999999999
Q ss_pred HHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007513 555 CHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 555 ~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~~ 599 (600)
|.||+|+.|+++++||+++||||++|++.|++.+.+||.+|||+.
T Consensus 542 ~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 586 (646)
T PTZ00460 542 ADLYGITMLLNNPQGLIEKGQITVEQIKLLQETREQLYPIIKPNA 586 (646)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 999999999999999999999999999999999999999999973
No 4
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-98 Score=765.92 Aligned_cols=582 Identities=34% Similarity=0.530 Sum_probs=500.6
Q ss_pred cchHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCH-
Q 007513 5 DQLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE- 83 (600)
Q Consensus 5 ~~l~~~r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 83 (600)
.+|..||+.++|||++|+.+++|..+..+++..+.+.++++|.+-..+....+.+++++..+. .|..+.+.|..+
T Consensus 19 ~Pl~~yr~~a~fdwK~~rl~~ege~~~lr~k~~vf~~~e~~p~~f~~p~~~l~me~qRel~~~----r~~~l~~~gv~~~ 94 (661)
T KOG0135|consen 19 SPLDEYRKRATFDWKELRLLVEGENDGLRIKSKVFNRLESDPDLFVSPDRNLSMEEQRELCMK----RIKRLVELGVFKF 94 (661)
T ss_pred CCcHHHHHhcCCCHHHHHHHhcccccceeeHHHHhhHhhcCCCeecCcccccCHHHHHHHHHH----HHHHHHHhccCcc
Confidence 488999999999999999999984348899999999999999555545567788887765432 233444445421
Q ss_pred -------H---HH---HHHHhhcCC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCC
Q 007513 84 -------E---EA---SMLRSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQG 148 (600)
Q Consensus 84 -------~---~~---g~~~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~ 148 (600)
+ .- -...+..+. +.-+.+|+.+|+.++..+||+.+++ |+.++.+.+++|||||||++||||+.+
T Consensus 95 ~~~~~~~~~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~ 173 (661)
T KOG0135|consen 95 WLVEDGPEAELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKG 173 (661)
T ss_pred eeecCchHHHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccc
Confidence 1 11 112233343 4567899999999999999998877 999999999999999999999999999
Q ss_pred CceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCc
Q 007513 149 LETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMK 228 (600)
Q Consensus 149 ~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~ 228 (600)
|+|||||||.+++||||||+.+..|+||+|+|.+|+|++|||++..+|.++|+|.|||||||++|+...|||+|+|++.|
T Consensus 174 I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K 253 (661)
T KOG0135|consen 174 IQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHK 253 (661)
T ss_pred eeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCcccceeEEecceecCcCcccc-cccccCCCceeccCcc---hh-hHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007513 229 FGNGAYNTMDNGVLRFEHVRIPRNQMLM-VSQVTREGKYVQSNVP---RQ-LLYGTMVYVRQTIVADASCALSRAVCIAT 303 (600)
Q Consensus 229 ~G~~~~~~~~~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~~---~~-~~~~~l~~~r~~~~a~~~g~~~~al~~a~ 303 (600)
.| ++|.|||.+.|+|||||++|||+ +++|.+||.|.++-.+ ++ .+.+.+..+|+.+++.++|+++-+++||+
T Consensus 254 ~G---lnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAI 330 (661)
T KOG0135|consen 254 IG---LNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAI 330 (661)
T ss_pred cc---cccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhh
Confidence 99 99999999999999999999999 9999999999984322 22 56788899999999999999999999999
Q ss_pred HHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHH
Q 007513 304 RYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLT 383 (600)
Q Consensus 304 ~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~ 383 (600)
||+..|+|||++.+.+|+||++||.+|+||.|+++.+++.+++..++...+.+...+...+.. ..++|++++++|.++
T Consensus 331 RYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n--~keiHALsSg~K~~~ 408 (661)
T KOG0135|consen 331 RYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVN--SKEIHALSSGLKPVA 408 (661)
T ss_pred hhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHhccchhh
Confidence 999999999998777999999999999999999999999999999999999988776554332 478999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHh
Q 007513 384 TTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL 463 (600)
Q Consensus 384 t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~yl~~~~~~ 463 (600)
||...+++++|+++||||||..+|+++.+..|.++++||||||+|++||+++.||+++...+ ..+|.++..+++.....
T Consensus 409 TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~~~~-~e~p~~~~~~ln~~~s~ 487 (661)
T KOG0135|consen 409 TWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYVSQK-KETPLSFVGFLNEYPSS 487 (661)
T ss_pred hHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHHHhh-ccCCchHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999998743 34455556666544333
Q ss_pred hhhcCCccccCC-CCCHHHHHHHHHHHHHHHHHHHHHH---HHhcCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 007513 464 MQCHCGVQKAED-WLNPSAILEAFEARAIRMSVACAQN---LSKFTNQEEGFAELAADLV-EAAVAHCQLIVVSKFIEKL 538 (600)
Q Consensus 464 ~~~~~~~~~~~~-~~~~~~l~~~~~~r~~~~~~~~~~~---l~~~~~~~~~~n~~~~~l~-~la~a~~~~~~l~~f~~~v 538 (600)
...........+ +.++.+++..|..|...++++.+.+ ++.+.+.+++||.++++.. .+|.||+|+.|+..|++.+
T Consensus 488 ~~~~~~s~~~~d~l~~~~f~~~~~~l~~~lLl~t~a~~~~~l~~g~~~fea~n~~q~h~~~~La~a~~E~~il~~~l~h~ 567 (661)
T KOG0135|consen 488 PDPVLASQLVSDTLRSSQFQLCYFWLRCHLLLETVASRERQLQSGLSSFEARNKCQVHQLRELALAFTEHTILQRFLDHV 567 (661)
T ss_pred CCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222121112233 3457777755555555455555444 4556778899999987655 4999999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007513 539 QQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 539 ~~~~~~~~~~~vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~ 598 (600)
.+ +++++++.||..++.+|+|+.|++|++.|+..||++++++..|++.+..+|.+|||+
T Consensus 568 ~k-~~~~s~k~vL~l~~dlyal~lLek~~~ll~~~gy~s~~~a~~vr~~~l~lc~elr~~ 626 (661)
T KOG0135|consen 568 HK-LPDPSVKAVLGLVRDLYALWLLEKHPALLYITGYVSGEFAGDVREKVLKLCAELRPV 626 (661)
T ss_pred hc-CCChhHHHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHHHHHHhccHH
Confidence 99 999999999999999999999999999999999999999999999999999999985
No 5
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.8e-97 Score=823.29 Aligned_cols=566 Identities=29% Similarity=0.470 Sum_probs=487.2
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC---------cccCCCHHHHHHHHHHHHHHHHHHHHHccC
Q 007513 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD---------NRAMLSRKELFKNTLRKAAYAWKRIIELRL 81 (600)
Q Consensus 11 r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (600)
..+++||+++|+.+|+| ++.++|+++++++.++|.|... +...+++++.++.+. +.|+.+.+.|+
T Consensus 46 ~~~~sf~~~~l~~~l~g--~~~~~r~~~~~~~~~~p~f~~~~~~~~~~~~~~~~~s~~~~~~~~~----~~~~~l~~~g~ 119 (680)
T PLN02312 46 NESYAFDVKEMRKLLDG--HNLEDRDWLFGLMMQSDLFNSKRRGGRVFVSPDYNQTMEQQREITM----KRILYLLERGV 119 (680)
T ss_pred cccCCCCHHHHHHHhCC--ccHHHHHHHHHHHhcCccccccccccccccCCccCCCHHHHHHhHH----HHHHHHHHhhh
Confidence 77899999999999998 5678899999999999999653 345578888776554 44555555553
Q ss_pred -----CHHH-HHHH--------HhhcCC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCC
Q 007513 82 -----SEEE-ASML--------RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSN 145 (600)
Q Consensus 82 -----~~~~-~g~~--------~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd 145 (600)
+++. ++.. .+..+. +.++.+|+++|+++|..+||++|+++|||++.+|+++||||+|||+||||
T Consensus 120 ~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~~~~ge~ig~fA~TEpghGSd 199 (680)
T PLN02312 120 FRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSN 199 (680)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEeeecCCCcCcc
Confidence 2221 1111 111222 23577888899999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeec
Q 007513 146 VQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDI 225 (600)
Q Consensus 146 ~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~ 225 (600)
+++++|||++|+++|+||||||+++|+|+||+|++..||+++|+||++++++++|+++|+||+||.++ .+.|||+|+++
T Consensus 200 v~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~FlV~ird~~~-~~~PGV~ig~~ 278 (680)
T PLN02312 200 VRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFIAQIRDQDG-NICPNIRIADC 278 (680)
T ss_pred hhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEEEeecCCCC-CCCCCEEeccC
Confidence 99999999999888999999999999999999944899999999999887788999999999998754 67999999999
Q ss_pred CCccCCCCcCcccceeEEecceecCcCcccc-cccccCCCceeccCc---ch-hhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 007513 226 GMKFGNGAYNTMDNGVLRFEHVRIPRNQMLM-VSQVTREGKYVQSNV---PR-QLLYGTMVYVRQTIVADASCALSRAVC 300 (600)
Q Consensus 226 ~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~---~~-~~~~~~l~~~r~~~~a~~~g~~~~al~ 300 (600)
++|+| +++.+|++|.|||||||+++||+ +++|+++|.|.++.. .. ..++..|..+|+.+++.++|++++|++
T Consensus 279 ~~K~G---~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~ 355 (680)
T PLN02312 279 GHKIG---LNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGRVTIAVSAIYSSKVGLA 355 (680)
T ss_pred CCccc---ccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999 999999999997422 22 145688999999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHH
Q 007513 301 IATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLK 380 (600)
Q Consensus 301 ~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK 380 (600)
+|++|+++|+|||.+++++|.||++||++|++|+||++.+|++++.+.++.+.+++. ......+.|..++++|
T Consensus 356 iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~-------~~~~~~~~~~~as~aK 428 (680)
T PLN02312 356 IAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKR-------TPESNKAIHVVSSGFK 428 (680)
T ss_pred HHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cccccchhHHHHHHHH
Confidence 999999999999986777889999999999999999999999999888887776531 1111246788999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccc--ccccc
Q 007513 381 SLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGT--TTYMG 458 (600)
Q Consensus 381 ~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~--~~yl~ 458 (600)
++++|.+.+++++|+|+|||+||++++++++++||++..+|+||+|+++++++|+.+++.+.+.+++++|.+. .+|+.
T Consensus 429 a~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~~~~~~ 508 (680)
T PLN02312 429 AVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEYVSAKKRNKPFKGLGLEHMN 508 (680)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHHHhccCCCCcchhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999887777665442 45663
Q ss_pred chhHhhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc----CChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007513 459 RAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF----TNQEEGFAELAADLVEAAVAHCQLIVVSKF 534 (600)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~----~~~~~~~n~~~~~l~~la~a~~~~~~l~~f 534 (600)
.... ......+..++.|+++++++|++|+.+++..+++++++. .+.+.+||++..+++++|+||++++++++|
T Consensus 509 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~a~n~~~~~~~~~a~ah~~~~i~~~F 585 (680)
T PLN02312 509 GPRP---VIPTQLTSSTLRDSQFQLNLFCLRERDLLERFASEVSELQSKGESREFAFLLSYQLAEDLGRAFSERAILQTF 585 (680)
T ss_pred cccc---cccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2110 000112346789999999999999999999998887643 345689999999999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007513 535 IEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 535 ~~~v~~~~~~~~~~~vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~ 598 (600)
+++|++ +.+++++++|++||.||+|+.|+++ ++|+++||||++|++.|++.|.+||.+|||+
T Consensus 586 ~~~i~~-~~~~~~~~vL~~L~~Lyal~~i~~~-~~fl~~~~ls~~~~~~i~~~i~~L~~~lrp~ 647 (680)
T PLN02312 586 LDAEAN-LPTGSLKDVLGLLRSLYVLISLDED-PSFLRYGYLSPDNVALVRKEVAKLCGELRPH 647 (680)
T ss_pred HHHHhc-cCCHHHHHHHHHHHHHHhHHHHHhh-HHHHhcCCCCHHHHHHHHHHHHHHHHHHhHh
Confidence 999997 7899999999999999999999776 6999999999999999999999999999997
No 6
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.2e-97 Score=824.90 Aligned_cols=574 Identities=32% Similarity=0.503 Sum_probs=486.8
Q ss_pred hccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHH
Q 007513 11 RKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEE 85 (600)
Q Consensus 11 r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~ 85 (600)
-++++||+++|+.++++ ++.++++++++|+.++|.|.... ..+.++..+.. ..++|+.+.++|+ +++.
T Consensus 47 ~~~~~f~~~~l~~~l~~--~~~~~r~~v~~~~~~~~~~~~~~--~~~~~~~~e~~---~~~l~~~~~~~g~~~~~~~~~~ 119 (686)
T PLN02636 47 SIKLSVNTEKLSLYMRG--KHRDIQEKIYEFFNSRPDLQTPV--EISKDEHRELC---MRQLTGLVREAGIRPMKYLVED 119 (686)
T ss_pred cccCCCCHHHHHhhcCC--cHHHHHHHHHHHHHhCccccCCc--hhhHHHhhhhH---HHHHHHHHHhcCccccccccCC
Confidence 35799999999999986 45689999999999998774322 12222222211 1456777788887 2211
Q ss_pred ---HHHH---HhhcCC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeC
Q 007513 86 ---ASML---RSSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDP 157 (600)
Q Consensus 86 ---~g~~---~~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~ 157 (600)
.... .+..+. +.++.+|+.+|+++|..+||+||+++|||++.+|++++|||+|||+||||+++++|||+||+
T Consensus 120 ~~~~~~~~e~l~~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~ 199 (686)
T PLN02636 120 PAKYFAITEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDP 199 (686)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcC
Confidence 1111 111122 34577898999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccC------CCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCC
Q 007513 158 QTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITD------GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGN 231 (600)
Q Consensus 158 ~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~------~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~ 231 (600)
++|+||||||+++|+|+||+|++..||+++|+||++++ ++++|+++||||+||+++|.+.|||+|+++++|+|
T Consensus 200 ~~defVLntP~~~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G- 278 (686)
T PLN02636 200 LTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVG- 278 (686)
T ss_pred CCCeEEECCCCCCeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccC-
Confidence 88999999999999999999944569999999999743 24689999999999999999999999999999999
Q ss_pred CCcCcccceeEEecceecCcCcccc-cccccCCCceecc--Ccch--hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007513 232 GAYNTMDNGVLRFEHVRIPRNQMLM-VSQVTREGKYVQS--NVPR--QLLYGTMVYVRQTIVADASCALSRAVCIATRYS 306 (600)
Q Consensus 232 ~~~~~~~~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~--~~~~--~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya 306 (600)
+++.+|+.|.|||||||+++||+ +++|+++|.|.++ ...+ ..+++.|..+|+.+++.++|++++|+++|++|+
T Consensus 279 --~~g~dng~l~FdnVrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa 356 (686)
T PLN02636 279 --LNGVDNGALRFRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYS 356 (686)
T ss_pred --CCCCcceEEEEeeEEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999873 1111 267889999999999999999999999999999
Q ss_pred hhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHH
Q 007513 307 AVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTA 386 (600)
Q Consensus 307 ~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~ 386 (600)
.+|+|||+ ++.+|.||++||.+|++|+||++.+++++++.+.+...+..... .++.....+.|..++++|++++|.
T Consensus 357 ~~R~qFg~-p~~~e~~I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~as~aK~~~t~~ 432 (686)
T PLN02636 357 LLRQQFGP-PKQPEISILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKK---THDDQLVADVHALSAGLKAYITSY 432 (686)
T ss_pred HcCEeCCC-CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccchhhHHHHHHHHHHHHHH
Confidence 99999998 44678899999999999999999999988877777665543321 223223356899999999999999
Q ss_pred HHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHh-hh
Q 007513 387 TADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQL-MQ 465 (600)
Q Consensus 387 a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~yl~~~~~~-~~ 465 (600)
+.+++++|+|+|||+||++++++++++||++..+|+||+|+|+++++|+++|+.+.+..++..+.++..||.+.... ..
T Consensus 433 a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 512 (686)
T PLN02636 433 TAKALSTCREACGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQYKEKFQGGTLSVTWNYLRESMNTYLS 512 (686)
T ss_pred HHHHHHHHHHHhcCCcccCcCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999988776666666678888654321 11
Q ss_pred hcCC----ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007513 466 CHCG----VQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF---TNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKL 538 (600)
Q Consensus 466 ~~~~----~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~---~~~~~~~n~~~~~l~~la~a~~~~~~l~~f~~~v 538 (600)
.+.. ..+..++.++++++++|++|+.+++..++.++++. .+.+++||+++++++++|+||++++++++|++.|
T Consensus 513 ~~~~~~~~~~~~~~l~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~awn~~~~~l~~~a~ah~~~~~~~~f~~~v 592 (686)
T PLN02636 513 QPNPVTTRWEGEEHLRDPKFQLDAFRYRTSRLLQTAALRLRKHSKTLGSFGAWNRCLNHLLTLAESHIESVILAKFIEAV 592 (686)
T ss_pred ccccccccccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12345689999999999999999999999988642 3457899999999999999999999999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCcC
Q 007513 539 QQDIPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTCV 599 (600)
Q Consensus 539 ~~~~~~~~~~~vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~~ 599 (600)
++ +++++++++|.+||.||+|+.|+++++||+++||||++|++.|++.+.+||.+|||+.
T Consensus 593 ~~-~~~~~~~~vL~~l~~Ly~l~~i~~~~g~fl~~~~l~~~~~~~i~~~i~~l~~~lrp~a 652 (686)
T PLN02636 593 ER-CPDRSTRAALKLVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLTEYLSFQVRNVA 652 (686)
T ss_pred hh-cCCHHHHHHHHHHHHHHhHHHHHHhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhHhH
Confidence 97 8899999999999999999999999999999999999999999999999999999973
No 7
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=1.8e-96 Score=816.63 Aligned_cols=557 Identities=43% Similarity=0.697 Sum_probs=494.1
Q ss_pred chHHHhccCCCCHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCC-cccCCCHHHHHHHHHHHHHHHHHHHHHccCC-H
Q 007513 6 QLAPERKKAQFDVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKD-NRAMLSRKELFKNTLRKAAYAWKRIIELRLS-E 83 (600)
Q Consensus 6 ~l~~~r~~~~f~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~ 83 (600)
+|++||++++||+++|+.+|+|+++..+.++.+.+++.++|.|... .....+|++.++............+.++++. +
T Consensus 2 ~l~~eR~~~~f~~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (610)
T cd01150 2 DLDKERASATFDWKALTHILEGGEENLRRKREVERELESDPLFQRELPSKHLSREELYEELKRKAKTDVERMGELMADDP 81 (610)
T ss_pred hhHHhhccCCCCHHHHHHHHcCCHHHHHHHHHHHHHHhcCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 8999999999999999999999888889999999999999999875 2235678888777666666666666677763 2
Q ss_pred HHHHHHH---hhcCC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCC
Q 007513 84 EEASMLR---SSVDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQ 158 (600)
Q Consensus 84 ~~~g~~~---~~~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~ 158 (600)
....... ...+. +.++.+|+++|+++|..+||+||+++|||++.+|+++||||+|||+||||+.+++|||+||++
T Consensus 82 ~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d~~ 161 (610)
T cd01150 82 EKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPL 161 (610)
T ss_pred HHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEECCC
Confidence 2222211 11222 346788999999999999999999999999999999999999999999999999999999987
Q ss_pred CCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCccc
Q 007513 159 TDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD 238 (600)
Q Consensus 159 ~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~ 238 (600)
+|+||||||+++|+|+||+|++..|++++|+||+..+++++|+++|+||+||+++|.+.|||+++++++|+| +++.|
T Consensus 162 t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G---~~g~d 238 (610)
T cd01150 162 TQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMG---LNGVD 238 (610)
T ss_pred CCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccC---CCCCC
Confidence 799999999999999999995567999999999988778899999999999999999999999999999999 99999
Q ss_pred ceeEEecceecCcCcccc-cccccCCCceeccCc-ch---hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 007513 239 NGVLRFEHVRIPRNQMLM-VSQVTREGKYVQSNV-PR---QLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFG 313 (600)
Q Consensus 239 ~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~-~~---~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg 313 (600)
|+.|.|||||||++++|+ +++|+++|.|..+.. +. ..+...+..+|+.+++.++|++++|+++|++|++.|+|||
T Consensus 239 ng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg 318 (610)
T cd01150 239 NGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFG 318 (610)
T ss_pred eEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecC
Confidence 999999999999999999 999999999987544 22 1456677889999999999999999999999999999999
Q ss_pred CCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHH
Q 007513 314 SKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEE 393 (600)
Q Consensus 314 ~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~ 393 (600)
++++.+|.||++||++|++|+|+++.+++++++..++...+.......+.++....++.|..++++|++++|.+.+++++
T Consensus 319 ~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~ 398 (610)
T cd01150 319 PKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQE 398 (610)
T ss_pred CCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98778899999999999999999999999999888887776655544444444445678999999999999999999999
Q ss_pred HHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhHhhhhcCCcccc
Q 007513 394 CRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQLGYGNMPVGTTTYMGRAEQLMQCHCGVQKA 473 (600)
Q Consensus 394 ~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 473 (600)
|+|+|||+||+.+++++++++|++..+|+||+|+++++++|+++++.+.+..+
T Consensus 399 ~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~~~~~~--------------------------- 451 (610)
T cd01150 399 CREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKYAQAFS--------------------------- 451 (610)
T ss_pred HHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHHhhhcC---------------------------
Confidence 99999999999999999999999999999999999999999999987654211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 007513 474 EDWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKP 549 (600)
Q Consensus 474 ~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~l~~f~~~v~~~~~~~~~~~ 549 (600)
|++++++|++|+.+++..+++++.+ +++..++||+++++++++|+||+++++++.|++.|++ +++++++.
T Consensus 452 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~awN~~~~~l~~~a~Ah~~~~~~~~f~~~~~~-~~~~~~~~ 525 (610)
T cd01150 452 -----LADYLEAYEWLAAHLLRHAAAQLEKLKKSGSGSFEARNNSQVHLRCAAKAHTEYTVLQRFHESVEE-IVDPSVRA 525 (610)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHH
Confidence 4577889999999999888877653 3566789999999999999999999999999999997 78999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007513 550 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~ 598 (600)
+|++||.||+|+.|+++++||++++|+|++|++.|++.+.+||.+|||+
T Consensus 526 vL~~L~~Ly~l~~i~~~~g~fl~~~~ls~~~~~~~~~~~~~l~~~lrp~ 574 (610)
T cd01150 526 VLKRLCDLYALWLLEEHIADFLEGGFLGGQDVKAVREALLALLPQLRPD 574 (610)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997
No 8
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-63 Score=470.40 Aligned_cols=360 Identities=21% Similarity=0.289 Sum_probs=316.4
Q ss_pred HcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcCC----
Q 007513 25 WAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE---- 95 (600)
Q Consensus 25 ~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~---- 95 (600)
+-.++||..||+++++|+.++-.... ..+++...++ ..+.+|+.++++|+ |+++||.+.++++-
T Consensus 39 ~g~~~e~~~~r~sv~kF~qeelaP~a---~eidk~n~~~----~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivm 111 (421)
T KOG0141|consen 39 FGLSDEQDQLRESVRKFFQEELAPHA---SEIDKANEFK----DLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVM 111 (421)
T ss_pred cCCCHHHHHHHHHHHHHHHHhhcchh---hhhhhcCCcc----hHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHH
Confidence 34578999999999999987543211 1222222222 35779999999887 57788887766431
Q ss_pred ----------chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEe
Q 007513 96 ----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIH 165 (600)
Q Consensus 96 ----------~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vln 165 (600)
...++.|.+++..-|.+.||+||+++|||++.+|+-+|+.|||||++|||+.++.+.|+++ |+.||||
T Consensus 112 EE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~--g~~yiLN 189 (421)
T KOG0141|consen 112 EEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKK--GDDYILN 189 (421)
T ss_pred HHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceec--CCcEEec
Confidence 3457899999999999999999999999999999999999999999999999999999988 8999999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEEccC--CCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEE
Q 007513 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLR 243 (600)
Q Consensus 166 tp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~--~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~ 243 (600)
|.|+||+| |+.||.+||+|.++.. ...+|+++|||+ ...||++..+.-+|+| |+|++++++.
T Consensus 190 -----GsK~witN-G~~advliVyAkTd~~a~~~~hGIt~FiVE-------kgm~GFs~~~KLdKlG---mrgsdTcELv 253 (421)
T KOG0141|consen 190 -----GSKFWITN-GPDADVLIVYAKTDHSAVPPSHGITAFIVE-------KGMPGFSTAQKLDKLG---MRGSDTCELV 253 (421)
T ss_pred -----CcEEEEec-CCCCcEEEEEEecCCCCCCCcCceEEEEEc-------CCCcccccchhhHhhc---CCCCcchhee
Confidence 99999999 9999999999999876 456899999999 8999999999999999 9999999999
Q ss_pred ecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccc
Q 007513 244 FEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 323 (600)
Q Consensus 244 fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i 323 (600)
|+|++||++++|| .++.++- .++..++..|+.+++..+|.++.+++.+..|+++|++||+ +|
T Consensus 254 Fed~~vpas~ilg-----~enkGvY------vlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk-------~i 315 (421)
T KOG0141|consen 254 FEDCKVPASNILG-----EENKGVY------VLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGK-------KI 315 (421)
T ss_pred hhhccCcHHHhcC-----cCCceEE------EEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCC-------ch
Confidence 9999999999998 6655543 5667788899999999999999999999999999999999 99
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Q 007513 324 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 403 (600)
Q Consensus 324 ~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~ 403 (600)
++||.+|+++|+|...+.+.|+.++.++..-|+ +.. ....+++++.|+++.+..++-+|+|++||.||
T Consensus 316 g~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~-------g~~-----~~kdcag~il~aaE~~tqVald~iQ~~GGnGY 383 (421)
T KOG0141|consen 316 GHFQLLQGKLADMYTTLCASRSYVYNVARACDA-------GNV-----DPKDCAGVILYAAEKATQVALDAIQCLGGNGY 383 (421)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhc-------CCC-----ChhhhhhhhhhHhhhhHHHHHHHHhhccCccc
Confidence 999999999999999999999999998876542 221 12337899999999999999999999999999
Q ss_pred cccCChhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 404 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 404 ~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
.+|+|+++++||++.+.|+.|++++.+..|+|.+.+
T Consensus 384 ineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~ 419 (421)
T KOG0141|consen 384 INEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNK 419 (421)
T ss_pred ccccchhhhhhhceeeeccCChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999865
No 9
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-63 Score=482.52 Aligned_cols=342 Identities=23% Similarity=0.300 Sum_probs=303.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC--------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~-------- 94 (600)
+|++.++.+++++|..+. +.+.. ..++++..++ ..+.+.+.++|+ |+++||.|..++.
T Consensus 38 ~E~e~~l~~tvrkfa~~~-i~Plv--~~mD~~~~~~------~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEi 108 (398)
T KOG0139|consen 38 SETEQMLQKTVRKFAQEE-IKPLV--REMDRESRYP------ASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEI 108 (398)
T ss_pred CcHHHHHHHHHHHHHHHh-cchHH--HhhhhhccCC------HHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHH
Confidence 578889999999998653 21211 2334443333 456777888886 7899998877643
Q ss_pred ----C--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 95 ----E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 95 ----~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
. ++.+.+|+.|..++|..+||+|||++|+|.+ .|+.+||||++||+.|||+..+.|+|+.| ||.|+||
T Consensus 109 sk~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~-~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~--Gd~~viN--- 182 (398)
T KOG0139|consen 109 SKVDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKL-TGDLVGSFALSEPGAGSDAFALKTTAKKD--GDDYVIN--- 182 (398)
T ss_pred hccCccceeEEEecccccchHHHHhCcHHHHhhhcchh-hccccceeeecCCCCCcchHHhhhhHhhc--CCeEEEe---
Confidence 1 4456788889999999999999999888876 67899999999999999999999999988 8999999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|.||+| +..|++++|||..+...+.+|+++|+|| .+.||++++...+|+| +|+++++.+.|+|||
T Consensus 183 --GsKmWItN-~~~A~~~lVfan~d~~~~~Kgit~fiV~-------rd~~Gl~~~k~eDKLG---mRaSsTcql~fedVr 249 (398)
T KOG0139|consen 183 --GSKMWITN-AGEADWFLVFANADPSKGYKGITCFIVP-------RDTPGLSLGKKEDKLG---MRASSTCQLHFEDVR 249 (398)
T ss_pred --cceeeecC-CcccceEEEEEecChhhccCceeEEEee-------CCCCCcccCCcccccc---ccccceeeEEecccc
Confidence 99999999 8999999999998777778899999999 8999999999999999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++|| +.|.+.. .....|+.+|+.++|+++|.++.|++.|+.|+++|.|||+ +|.+||.
T Consensus 250 Vpks~IlG-----e~G~Gyk------yAm~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk-------~l~d~Q~ 311 (398)
T KOG0139|consen 250 VPKSSILG-----EYGKGYK------YAIEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGK-------RLLDFQG 311 (398)
T ss_pred ccchhhcc-----cCCcchH------HHHHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcc-------hhhhHHH
Confidence 99999999 7788877 7888999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+||++|++.+++|++|+++|+++++-+.. .+...+++|+|.++++.+..++..|+|+.||.||+.++|
T Consensus 312 iQhqiA~~~teiEaaRlL~ynaAr~k~~G------------~pf~keAAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~p 379 (398)
T KOG0139|consen 312 LQHQIADMATEIEAARLLVYNAARMKDQG------------LPFVKEAAMAKLYASEVATKTTHQCIQWLGGVGYTKDFP 379 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CchHHHHHHHHHhhhhhhhHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999987531 235667899999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhH
Q 007513 409 LPELFAVYVPACTYEGDNI 427 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~ 427 (600)
.+++|||++...||||+.+
T Consensus 380 aek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 380 AEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHHhhhceeeeeecCCCC
Confidence 9999999999999999863
No 10
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-61 Score=460.18 Aligned_cols=360 Identities=22% Similarity=0.298 Sum_probs=313.7
Q ss_pred HHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcCC---
Q 007513 24 VWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE--- 95 (600)
Q Consensus 24 ~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~--- 95 (600)
-+..+++|.++++.+++|..+.-+ +.. ..++....++. .+.+...++|+ |+++||.+.+.++.
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~-P~a--ae~Dk~ge~P~------~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI 95 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMI-PNA--AEYDKSGEFPW------EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLI 95 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhc-cch--hhhcccCCCcH------HHHHHHHHcccCcccCccccCCCCchhHHHHHH
Confidence 345678999999999999866432 211 12232333332 23333446665 67788888765543
Q ss_pred -----------chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEE
Q 007513 96 -----------PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVI 164 (600)
Q Consensus 96 -----------~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vl 164 (600)
...+..| +|+.+.|..+|++|||++|||+++...++++||+||||+|||+.++.|+|+.. ||+|||
T Consensus 96 ~E~LayGCtg~~~~I~~~-~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~Kk--GDeYii 172 (408)
T KOG0140|consen 96 FEALAYGCTGIQTAISIH-NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKK--GDEYII 172 (408)
T ss_pred HHHHHccchhHHHHHhcc-chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhc--CCEEEE
Confidence 1223334 58899999999999999999999999999999999999999999999999976 999999
Q ss_pred ecCCCCccccccCCCCCCccEEEEEEEEccCC---CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCccccee
Q 007513 165 HSPTLTSSKWWPGGLGKVSTHAVVYARLITDG---QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGV 241 (600)
Q Consensus 165 ntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~---~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~ 241 (600)
| |.|.||+| +.+|+|++|+||+++++ ..+++++|+|+ .+.||++.+....++| .|..|+-.
T Consensus 173 N-----GsKawItg-~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe-------~dTpGlt~GkKE~nmG---qr~sdTR~ 236 (408)
T KOG0140|consen 173 N-----GSKAWITG-AGHANWYFVLARTDPDPKTPAGKAFTAFIVE-------GDTPGLTRGKKEKNMG---QRCSDTRG 236 (408)
T ss_pred c-----Cceeeeec-CCccceEEEEEecCCCCCCCCCcceEEEEEe-------CCCCCcCcChhhhccc---ccCCCCce
Confidence 9 99999999 89999999999998863 35789999999 8999999999999999 99999999
Q ss_pred EEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCc
Q 007513 242 LRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPET 321 (600)
Q Consensus 242 v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~ 321 (600)
|+|+||+||.+|+|+ .+|.++. +.++.++.+|..+++.++|.+.++++.+++|+.+|+|||.
T Consensus 237 itFEDvrVP~~Nvlg-----~~G~GFk------vAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~------- 298 (408)
T KOG0140|consen 237 ITFEDVRVPKENVLG-----APGAGFK------VAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGT------- 298 (408)
T ss_pred eeeeecccchhcccc-----CCCccce------ehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCc-------
Confidence 999999999999998 8898887 8889999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccc
Q 007513 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~ 401 (600)
||.++|.+|..||+|...++.+|.+.+.+++.+|+ + .++ ...++++|.++++.+..++..++|++||.
T Consensus 299 ~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~-------~----r~~-sy~aSiAK~fA~D~an~~at~AvQifGG~ 366 (408)
T KOG0140|consen 299 PIANHQAVQFMLADMAINLELARLMTRNAAWEVDN-------G----RRN-SYYASIAKLFATDTANQAATNAVQIFGGN 366 (408)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------C----Ccc-hHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 99999999999999999999999999999988763 1 223 56789999999999999999999999999
Q ss_pred cccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHH
Q 007513 402 GYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 402 G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~ 441 (600)
||..|+|++.++||++.++||||+|+++|..|+|.||..+
T Consensus 367 Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~ 406 (408)
T KOG0140|consen 367 GFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKF 406 (408)
T ss_pred CccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999865
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=3.6e-54 Score=456.22 Aligned_cols=353 Identities=18% Similarity=0.175 Sum_probs=294.7
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC-------
Q 007513 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (600)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~------- 94 (600)
.++||.++++++++|+.++..... .+...+....+..++|+.+.++|| |+++||.+.++.+
T Consensus 4 ~~~eq~~l~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~ee 76 (378)
T TIGR03203 4 LSEEQRLLKESVEGLLKTSYDFDS-------RKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEA 76 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHH-------HHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHH
Confidence 468999999999999987533110 011111112244678999999998 6788887654422
Q ss_pred --C---chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007513 95 --E---PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (600)
Q Consensus 95 --~---~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~ 169 (600)
. +.|+..+..++...+..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+.+ +|+|+||
T Consensus 77 l~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~--g~~~~l~---- 150 (378)
T TIGR03203 77 LGKALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKT--GDGWVID---- 150 (378)
T ss_pred HhCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEc--CCEEEEE----
Confidence 1 2343333334556788999999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEccCC-CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 170 ~G~K~~i~~~a~~Ad~~lV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|.||++ +..||+++|+|++..+. +..|+++|+|| .+.|||++.+.+.++| . ..+.|.||||+
T Consensus 151 -G~K~~vt~-a~~Ad~~lv~ar~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~g---~---~~~~l~fd~v~ 215 (378)
T TIGR03203 151 -GEKFVVLN-GETADTLIVTARTKGARRDRTGIGVFLVP-------AGAKGVTIKGYPTQDG---L---HAADITFTGVV 215 (378)
T ss_pred -eEEEEecC-CccCCEEEEEEecCCCCCCCCceEEEEEE-------CCCCCceeccccccCC---C---ceeeEEECCCc
Confidence 99999999 89999999999975432 34689999999 7889999987766666 4 45889999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++|+ ..|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 216 vp~~~~lg-----~~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~-------pi~~~Q~ 277 (378)
T TIGR03203 216 VGADAAIG-----DPENALP------LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGV-------PIGSFQV 277 (378)
T ss_pred ccHHhhcC-----CcchHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCc-------cchhhHH
Confidence 99999998 5555554 6677888999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+||+|++|.+.+++++++++++++..+. + ...+....++++|+++++.+.+++++|+|+|||+||+++++
T Consensus 278 vq~~lAdm~~~~e~ar~l~~~aa~~~~~--------~--~~~~~~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~ 347 (378)
T TIGR03203 278 LQHRAADMFVAVEQARSMAMFATMASDF--------D--DAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAK 347 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------c--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccceeecccch
Confidence 9999999999999999999999876542 0 01123456889999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVAR 435 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~ 435 (600)
++++|||++...+++|++++++.+++.
T Consensus 348 ~~~~~r~a~~~~~~~G~~~~~~~~~~~ 374 (378)
T TIGR03203 348 IGHYFKRLTMIEHTFGDTDFHLSRVSA 374 (378)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999999999999887
No 12
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-51 Score=459.18 Aligned_cols=499 Identities=16% Similarity=0.136 Sum_probs=352.4
Q ss_pred cCCCCHHHHHHHHc--CChhhHHHHHH-HHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHH
Q 007513 13 KAQFDVDEMKIVWA--GSRHAFQVSDR-IARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEE 84 (600)
Q Consensus 13 ~~~f~~~~l~~~~~--~~~e~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~ 84 (600)
.-.+||+.|-.+-+ -++|+.++++. +++++..-..+. ..+ .......++|+.+.+.|| |++
T Consensus 63 ~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~~~~~~~--------~~~---~~~~~P~e~w~~L~e~G~~gl~IPee 131 (777)
T PRK09463 63 SGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCRMVNDWQ--------ITH---ELADLPPEVWQFIKEHGFFGMIIPKE 131 (777)
T ss_pred CCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--------Hhc---cccCCCHHHHHHHHHCCCCcCCCchh
Confidence 44567777733333 26788888886 666654211000 000 001123568999999997 688
Q ss_pred HHHHHHhhcC------------Cc--hhhHhhHhchH-HHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCC
Q 007513 85 EASMLRSSVD------------EP--AFTDLHWGMFV-PAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGL 149 (600)
Q Consensus 85 ~~g~~~~~~~------------~~--~~~~~~~~l~~-~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~ 149 (600)
+||.+.+... .+ ..+.+|..++. ..|..+||+|||++|||++++|+.++||++|||++|||+.++
T Consensus 132 yGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i 211 (777)
T PRK09463 132 YGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSI 211 (777)
T ss_pred hCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccc
Confidence 8887654321 11 12345554553 478899999999999999999999999999999999999999
Q ss_pred ceEEEEe---CCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEE-ccC-----CCCCceEEEEEEeccCCCCCCC
Q 007513 150 ETTATFD---PQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----GQDHGVNGFIVQLRSLEDHSPL 217 (600)
Q Consensus 150 ~ttA~~d---~~~~---~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~-~~~-----~~~~g~~~flV~~rd~~~~~~~ 217 (600)
.|+++.. .+|+ +|+|| |+|.||++ +..||+++|++++ +.+ +++.|+++|+|| .+.
T Consensus 212 ~Tta~~~~a~~dGd~~~g~vLN-----G~K~~IT~-a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp-------~d~ 278 (777)
T PRK09463 212 PDTGVVCKGEWQGEEVLGMRLT-----WNKRYITL-APIATVLGLAFKLYDPDGLLGDKEDLGITCALIP-------TDT 278 (777)
T ss_pred cccceeeeeeecCCcccceEEE-----EEEEeeCC-CCccCEEEEEEEecCcccccCCCCCCceEEEEEE-------CCC
Confidence 8765421 2255 59999 99999999 8999999999986 322 235689999999 788
Q ss_pred CCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHH-HHHHHHHHHHHH
Q 007513 218 PGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVR-QTIVADASCALS 296 (600)
Q Consensus 218 pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r-~~~~a~~~g~~~ 296 (600)
|||++++.+.++| ++ ..++.++|+||+||.+++|| .+...|.++. .+...+..+| +.+++.++|+++
T Consensus 279 pGV~ig~~~~~lG---~r-~~~g~v~fddV~VP~d~lLG--~~~~~G~G~~------~l~~~L~~gR~i~laA~avG~ar 346 (777)
T PRK09463 279 PGVEIGRRHFPLN---VP-FQNGPTRGKDVFIPLDYIIG--GPKMAGQGWR------MLMECLSVGRGISLPSNSTGGAK 346 (777)
T ss_pred CCeEecccccccC---cc-cccceEEeeeeecCHHHhcc--cccccChHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 87 56899999999999999998 0001366665 6778899999 899999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHH
Q 007513 297 RAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACT 376 (600)
Q Consensus 297 ~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (600)
++++.+++|+++|+|||+ ||++||.+||+|++|.+.+|+++++.+.+++.+|. +. .....+
T Consensus 347 ~al~~Av~YA~~R~QFG~-------pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~-------G~-----~~~~~a 407 (777)
T PRK09463 347 LAALATGAYARIRRQFKL-------PIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDL-------GE-----KPSVLS 407 (777)
T ss_pred HHHHHHHHHHHHHHHcCC-------ChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHH
Confidence 999999999999999999 99999999999999999999999888887766542 11 124568
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhHHhhhhcccccccchhHHHHHHH------------HHHHHHHHH
Q 007513 377 AGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLLLQV------------ARFLMKTVS 442 (600)
Q Consensus 377 a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~--~~l~~~~rd~~~~~~~eG~~~v~~~~i------------a~~ll~~~~ 442 (600)
+++|+++++.+.+++++|+|+|||+||+.+ ++++++|||++...|+||+|++++..+ +..-+....
T Consensus 408 A~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~iifgqga~r~hp~~~~~~~~~~ 487 (777)
T PRK09463 408 AIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLMIFGQGAIRCHPYVLKEMEAAQ 487 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHHHcCCcchhcCHHHHHHHHHHh
Confidence 899999999999999999999999999997 899999999999999999999999987 333333221
Q ss_pred Hh-----c-CCCCCccccccccc-h-hHhh-hhcCCccccCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHhcCChhhhH
Q 007513 443 QL-----G-YGNMPVGTTTYMGR-A-EQLM-QCHCGVQKAEDWLNPS--AILEAFEARAIRMSVACAQNLSKFTNQEEGF 511 (600)
Q Consensus 443 ~~-----~-~~~~~~~~~~yl~~-~-~~~~-~~~~~~~~~~~~~~~~--~l~~~~~~r~~~~~~~~~~~l~~~~~~~~~~ 511 (600)
+. + ..++|.+...|+-. . ..+. ......... .-.++. -..+.+++.+..+...+--.|. ..+...
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~a~~~d~~l~---~~g~~l 563 (777)
T PRK09463 488 NNDKQALKAFDKALFGHIGFVVSNAVRSFWLGLTGGRLSA-APVDDATKRYYRQLNRLSANLALLADVSML---VLGGSL 563 (777)
T ss_pred cccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHH
Confidence 10 0 00122222222211 0 1110 000000000 112322 1112122222221111111111 134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHhhhhHHH
Q 007513 512 AELAADLVEAAVAHCQLIVVSKFIEKLQQDIPGKGVKPILEILCHIYALHLVHKHLGDFV 571 (600)
Q Consensus 512 n~~~~~l~~la~a~~~~~~l~~f~~~v~~~~~~~~~~~vL~~l~~L~aL~~i~~~~~~fl 571 (600)
...+..+.+++.+.+++|++.+-+.+.+. ...+.-...|...++-++++++++.+..++
T Consensus 564 ~~~e~~~~Rl~d~~~~ly~~~a~l~r~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 622 (777)
T PRK09463 564 KRRERLSARLGDILSQLYLASAVLKRYED-EGRPEADLPLVHWAVQDALYQAEQALDGLL 622 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677789999999999999998888875 222333356888888999999999875544
No 13
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.4e-50 Score=434.08 Aligned_cols=366 Identities=21% Similarity=0.253 Sum_probs=305.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhh
Q 007513 18 VDEMKIVWAGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS 92 (600)
Q Consensus 18 ~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~ 92 (600)
++-|+. +.+++|.++++.+++|++++..... .++.. ....++|+.+.+.|| |+++||.+.++
T Consensus 20 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~-----~d~~~------~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~ 86 (409)
T cd01161 20 PSVLTE--EQTEELNMLVGPVEKFFEEVNDPAK-----NDQLE------KIPRKTLTQLKELGLFGLQVPEEYGGLGLNN 86 (409)
T ss_pred ccccCc--cCCHHHHHHHHHHHHHHHHhCCchh-----hcccc------CCCHHHHHHHHhCCCCCCCCChhhCCCCCCH
Confidence 344444 3357899999999999987533211 01111 123568999999997 67788765443
Q ss_pred cC-----------Cc--hhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCC
Q 007513 93 VD-----------EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQT 159 (600)
Q Consensus 93 ~~-----------~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~ 159 (600)
.+ .+ .++..|..+....+..+|+++|+++|+|++++|+.++|+++|||++|||+..++|+|++++++
T Consensus 87 ~~~~~v~e~l~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g 166 (409)
T cd01161 87 TQYARLAEIVGMDLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDG 166 (409)
T ss_pred HHHHHHHHHHhhChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCC
Confidence 21 11 123455545555678899999999999999999999999999999999999999999997667
Q ss_pred CeEEEecCCCCccccccCCCCCCccEEEEEEEEcc---CCC-CCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcC
Q 007513 160 DEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT---DGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYN 235 (600)
Q Consensus 160 ~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~---~~~-~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~ 235 (600)
++|+|| |+|+||+| +..||+++|.|++.. ++. ..++++|+|| .+.|||++.+.|+++| ++
T Consensus 167 ~g~~l~-----G~K~~vs~-~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp-------~~~~gv~~~~~~~~~G---~~ 230 (409)
T cd01161 167 KHYVLN-----GSKIWITN-GGIADIFTVFAKTEVKDATGSVKDKITAFIVE-------RSFGGVTNGPPEKKMG---IK 230 (409)
T ss_pred CEEEEE-----eEEEeecC-CCcCCEEEEEEEcCCCCCCCCCCCceEEEEEe-------CCCCCcccCCcccccC---CC
Confidence 899999 99999999 889999999999752 221 2578899999 7789999999999999 99
Q ss_pred cccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Q 007513 236 TMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSK 315 (600)
Q Consensus 236 ~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~ 315 (600)
+++++.|.|+||+||.+++|+ ..|.++. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+
T Consensus 231 g~~s~~v~~~~v~Vp~~~~lg-----~~g~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~- 298 (409)
T cd01161 231 GSNTAEVYFEDVKIPVENVLG-----EVGDGFK------VAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK- 298 (409)
T ss_pred CCCceEEEeccEEECHHHcCC-----CCChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-
Confidence 999999999999999999998 5555443 4566788899999999999999999999999999999999
Q ss_pred CCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 007513 316 NGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECR 395 (600)
Q Consensus 316 ~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~ 395 (600)
||.+||.+|++|+++.+.+++++.+++.+++.+++ . ...+....++++|+++++.+.+++++|+
T Consensus 299 ------~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~-------~---~~~~~~~~~~~aK~~a~~~a~~v~~~a~ 362 (409)
T cd01161 299 ------KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDR-------G---LKAEYQIEAAISKVFASEAAWLVVDEAI 362 (409)
T ss_pred ------cHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------C---CCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887652 1 1123456689999999999999999999
Q ss_pred HHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 396 KLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 396 q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
|+|||.||+++++++++|||++...+++|++++++.+|++.+|++
T Consensus 363 ~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 363 QIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred HHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999864
No 14
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=5.6e-50 Score=413.41 Aligned_cols=473 Identities=21% Similarity=0.230 Sum_probs=360.0
Q ss_pred HHHHHHHHHccC-----CHHHHHHHHhhc------------CC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccc
Q 007513 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (600)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~~g~~~~~~------------~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (600)
...|+.+.++|+ |++++|.+...- +. ++.+..|.++....|..+||++||++|||++++|+
T Consensus 112 ~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~ 191 (634)
T KOG0137|consen 112 ETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGK 191 (634)
T ss_pred hhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCC
Confidence 345666666664 677777664321 11 22334565567778999999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCC----CCceEEEEE
Q 007513 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQ----DHGVNGFIV 206 (600)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~----~~g~~~flV 206 (600)
.+++||+|||..|||+.++.|+|+..++++.|+|| |.|.||+| +..||+++|||++..++. .+++++|||
T Consensus 192 ~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LN-----G~Kiwisn-~g~Adif~VfAqt~~~~~~g~~k~k~T~Flv 265 (634)
T KOG0137|consen 192 LIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLN-----GSKIWISN-GGLADIFTVFAQTEVDPADGEVKRKITAFLV 265 (634)
T ss_pred ccceEEEecCCCCcccccceeeeeecCCCCeEEEc-----CeeEEEec-CccceeeeeeeccccCCCCccccCceEEEEE
Confidence 99999999999999999999999999999999999 99999999 899999999999875432 368999999
Q ss_pred EeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHH
Q 007513 207 QLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQT 286 (600)
Q Consensus 207 ~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~ 286 (600)
+ ++..||+-++...|+| .++++.+.|.|++|.||.+|+|| .+|.++. .....++.+|+.
T Consensus 266 e-------r~~~Gvt~G~~e~k~G---iKgsnt~~v~f~~~ki~~envlG-----~~G~G~k------va~nilnsgR~~ 324 (634)
T KOG0137|consen 266 E-------RDFGGVTNGPPEKKMG---IKGSNTAEVHFEGVKIPIENVLG-----KPGDGFK------VAMNILNSGRFG 324 (634)
T ss_pred e-------ccccCccCCCchhhhc---ccccceeeeeeccccccHHHhcC-----CCCcchH------HHHHHHccCCcc
Confidence 9 6788999999999999 99999999999999999999999 8888887 788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007513 287 IVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 366 (600)
Q Consensus 287 ~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~ 366 (600)
+++..+|.+++++..+.+|+..|.|||. ++-+|..+|.+++.|...+|++.++.|..+..+|+
T Consensus 325 ~aaa~~G~mkr~I~~~~d~~~~rtQ~g~-------~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~---------- 387 (634)
T KOG0137|consen 325 MAAALLGLMKRIIEEAADYATNRTQFGK-------KLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDE---------- 387 (634)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcceecCc-------chhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc----------
Confidence 9999999999999999999999999999 99999999999999999999999999998776653
Q ss_pred CChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHHHHh--
Q 007513 367 STLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTVSQL-- 444 (600)
Q Consensus 367 ~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~~~~-- 444 (600)
....+.++++++.|.++++.++.++++++|++||+||+.+.++++.+||++.++|+||+|++++.-||..-+...++.
T Consensus 388 ~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~q~ag~~l~ 467 (634)
T KOG0137|consen 388 VGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGLQHAGKHLA 467 (634)
T ss_pred ccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHHHhhhHHHH
Confidence 233578888999999999999999999999999999999999999999999999999999999999998766544331
Q ss_pred -----cCCCCCccccccccchhHhhhhcCCccccCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHhcCChhhhHHHHHHH
Q 007513 445 -----GYGNMPVGTTTYMGRAEQLMQCHCGVQKAEDWLNPSAILEA--FEARAIRMSVACAQNLSKFTNQEEGFAELAAD 517 (600)
Q Consensus 445 -----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~r~~~~~~~~~~~l~~~~~~~~~~n~~~~~ 517 (600)
.+..||--...=..+.....+... -....+..||+....+ ++.-.. +...+.+++- .+.+....+.+..
T Consensus 468 ~~~r~~kn~n~gli~~~~~~~~~~~g~~~-~~~ls~hvhpsL~~saq~~e~~~~-~~~~~Ve~ll--~k~~k~iv~~q~~ 543 (634)
T KOG0137|consen 468 TGVRALKNANPGLIGGKVSRLRSLRGPGT-GLYLSEHVHPSLQDSAQKLESSLA-RFQQVVEKLL--TKHGKGIVEEQSV 543 (634)
T ss_pred HHHHHhhcCCcchhcchhhhhhhccCCCc-ccccccccCHHHHHHHHHHHHHHH-HHHHHHHHHH--HHhccchhHHHHH
Confidence 111122100000001111110000 0123455677765542 111111 1222222222 1234555667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-C---CCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCC-HHHHHHHHHHHHH
Q 007513 518 LVEAAVAHCQLIVVSKFIEKLQQD-I---PGKGVKPILEILCHIYALHLVHKHLGDFVSTGCIT-AKQASLANEQLRS 590 (600)
Q Consensus 518 l~~la~a~~~~~~l~~f~~~v~~~-~---~~~~~~~vL~~l~~L~aL~~i~~~~~~fl~~~~ls-~~q~~~i~~~~~~ 590 (600)
+.++|.+-+..|.+-.-+++.+++ + +..+....+....+.-+-.+..+.+....+.+..+ ..++..+.+++.+
T Consensus 544 l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~~~~~~d~~i~~~sk~v~e 621 (634)
T KOG0137|consen 544 LQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSGHVVNLDRNIVSLSKTVLE 621 (634)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcHHHHHHHHHHHh
Confidence 899999999999999999999875 2 34444445554445555555555554333333444 3446666666554
No 15
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.2e-50 Score=428.08 Aligned_cols=354 Identities=25% Similarity=0.315 Sum_probs=299.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhc---------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV--------- 93 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~--------- 93 (600)
+|+|.++++.+++|+.++..... ..++....+..++|+.+.+.|| |+++||.+.+..
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l 72 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHA---------ADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEAL 72 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcch---------hhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHH
Confidence 47888999999999977432111 0111111234568999999887 677888654432
Q ss_pred ---CCch--hhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 94 ---DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 94 ---~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
+.+. .+.+|. +++..+..+|+++|+++|+|++.+|+.++++++|||++|||+..+.|+|+++ +++|+||
T Consensus 73 ~~~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~--- 146 (375)
T cd01162 73 STGCVSTAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVRE--GDHYVLN--- 146 (375)
T ss_pred HhhchhHHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEe--CCEEEEE---
Confidence 1122 233443 5566788899999999999999999999999999999999999999999998 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|+||++ +..||+++|+|+...++ ..++++|+|| .+.|||++.+.|+++| +++++++.|.||||+
T Consensus 147 --G~k~~vs~-~~~ad~~~v~a~~~~~~-~~~~~~~lv~-------~~~~gv~v~~~~~~~g---~~~~~~~~l~f~~v~ 212 (375)
T cd01162 147 --GSKAFISG-AGDSDVYVVMARTGGEG-PKGISCFVVE-------KGTPGLSFGANEKKMG---WNAQPTRAVIFEDCR 212 (375)
T ss_pred --EEEEEecC-CCCCCEEEEEEEecCCC-CCceEEEEEe-------CCCCCeecCCcccccC---CCCCCeeEEEECceE
Confidence 99999999 89999999999975432 3578899999 7789999999999999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++|+ .+|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||. ||++||.
T Consensus 213 Vp~~~~lg-----~~~~g~~------~~~~~l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~-------~l~~~~~ 274 (375)
T cd01162 213 VPVENRLG-----GEGQGFG------IAMAGLNGGRLNIASCSLGAAQAALDLARAYLEERKQFGK-------PLADFQA 274 (375)
T ss_pred ecHHHcCC-----CCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHH
Confidence 99999998 5555443 4455677899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+|+++++|.+.+++++.+++.+++.+++ +. .+....++++|+++++.+.++++.++|+|||+||+.+++
T Consensus 275 vq~~la~~~~~l~~a~~~~~~a~~~~~~-------~~----~~~~~~~~~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 343 (375)
T cd01162 275 LQFKLADMATELVASRLMVRRAASALDR-------GD----PDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYP 343 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCh
Confidence 9999999999999999999999887752 11 123445788999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
++++|||++...+++|++++++.++++.+++
T Consensus 344 l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~ 374 (375)
T cd01162 344 VEQYVRDLRVHQILEGTNEIMRLIIARALLT 374 (375)
T ss_pred HHHHHHHhhcceeecCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999998875
No 16
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=5.4e-50 Score=426.65 Aligned_cols=353 Identities=22% Similarity=0.255 Sum_probs=297.5
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHhhcC-------
Q 007513 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL----SEEEASMLRSSVD------- 94 (600)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~g~~~~~~~------- 94 (600)
.-++||.++++.+++|+.+...... . + ......+..++|+.+.+.|| |+++||.+.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~------~--~-~d~~~~~~~~~~~~l~~~Gl~~~vP~~~GG~g~~~~~~~~v~e~ 82 (386)
T cd01151 12 LLTEEERAIRDTAREFCQEELAPRV------L--E-AYREEKFDRKIIEEMGELGLLGATIKGYGCAGLSSVAYGLIARE 82 (386)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccH------H--H-HHHhCCCCHHHHHHHHHCCCCccCccccCCCCCCHHHHHHHHHH
Confidence 3468999999999999976432110 0 0 01111234578999998886 6778886544321
Q ss_pred -----Cc--hhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecC
Q 007513 95 -----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSP 167 (600)
Q Consensus 95 -----~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp 167 (600)
.+ .++.+|..++..+|..+|+++|+++|+|++.+|+.++|+++|||++|||+.++.|+|+++ +|+|+||
T Consensus 83 l~~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~--~~g~~ln-- 158 (386)
T cd01151 83 VERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKD--GGGYKLN-- 158 (386)
T ss_pred HHhhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEE--CCEEEEE--
Confidence 12 234455556666788999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecce
Q 007513 168 TLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (600)
Q Consensus 168 ~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v 247 (600)
|+|.||++ +..||+++|+|+++. +.++++|+|| .+.|||++.+.|+++| +++++++.|.|+||
T Consensus 159 ---G~K~~is~-~~~Ad~~lv~ar~~~---~~~~~~flVp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~f~~v 221 (386)
T cd01151 159 ---GSKTWITN-SPIADVFVVWARNDE---TGKIRGFILE-------RGMKGLSAPKIQGKFS---LRASITGEIVMDNV 221 (386)
T ss_pred ---EEEEeecC-CCcCCEEEEEEEECC---CCcEEEEEEc-------CCCCCeecCCCCCCcC---CCCCceeEEEEccE
Confidence 99999999 899999999999753 2468899999 6789999999999999 99999999999999
Q ss_pred ecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 007513 248 RIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 ~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q 327 (600)
+||.+++++ . +.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||+++|
T Consensus 222 ~Vp~~~~l~-----~-~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q 282 (386)
T cd01151 222 FVPEENLLP-----G-AEGLR------GPFKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGR-------PLAAFQ 282 (386)
T ss_pred EeCHHHcCC-----c-cccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCC-------chhhhH
Confidence 999999996 2 23332 3455677899999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007513 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 407 (600)
.+|++|++|.+.+++++.+++++++.+++ +. .....++++|.++++.+.++++.++|+|||+||+.++
T Consensus 283 ~vq~~la~~~~~~eaar~l~~~a~~~~d~-------~~-----~~~~~~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~ 350 (386)
T cd01151 283 LVQKKLADMLTEIALGLLACLRVGRLKDQ-------GK-----ATPEQISLLKRNNCGKALEIARTAREMLGGNGISDEY 350 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCC
Confidence 99999999999999999999999887652 11 1233578899999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
+++++|||++...+++|++++++..+++.+++
T Consensus 351 ~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 351 HIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999885
No 17
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=7.1e-50 Score=424.02 Aligned_cols=352 Identities=23% Similarity=0.295 Sum_probs=296.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC---------
Q 007513 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD--------- 94 (600)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~--------- 94 (600)
+||.++++.+++|+.+... +. ....+....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 1 ~~~~~l~~~~~~~~~~~~~-~~--------~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la 71 (372)
T cd01160 1 EEHDAFRDVVRRFFAKEVA-PF--------HHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELA 71 (372)
T ss_pred ChHHHHHHHHHHHHHHhCc-hh--------HHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHH
Confidence 4788999999999986421 00 01111221234668999999997 6788887644321
Q ss_pred ---Cch-hhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCC
Q 007513 95 ---EPA-FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLT 170 (600)
Q Consensus 95 ---~~~-~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~ 170 (600)
.+. .+.+|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||+..++|+|+++ +++|+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~l~----- 144 (372)
T cd01160 72 RAGGSGPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKD--GDHYVLN----- 144 (372)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEe--CCEEEEe-----
Confidence 122 23445556677888999999999999999999999999999999999999999999998 7899999
Q ss_pred ccccccCCCCCCccEEEEEEEEccC-CCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceec
Q 007513 171 SSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (600)
Q Consensus 171 G~K~~i~~~a~~Ad~~lV~A~~~~~-~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (600)
|+|.||+| +..||+++|+|++..+ +.+.++++|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 145 G~k~~vs~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~V 213 (372)
T cd01160 145 GSKTFITN-GMLADVVIVVARTGGEARGAGGISLFLVE-------RGTPGFSRGRKLKKMG---WKAQDTAELFFDDCRV 213 (372)
T ss_pred eEEEEecC-CCccCEEEEEEEeCCCCCCCCceEEEEEe-------CCCCCeecCCcccccc---CCCCCeEEEEecceEc
Confidence 99999999 8999999999998654 234678999999 6789999999999999 9999999999999999
Q ss_pred CcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHH
Q 007513 250 PRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQ 329 (600)
Q Consensus 250 P~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~ 329 (600)
|.+++|+ .++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.+
T Consensus 214 p~~~~lg-----~~~~g~~------~~~~~~~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------~i~~~q~v 275 (372)
T cd01160 214 PAENLLG-----EENKGFY------YLMQNLPQERLLIAAGALAAAEFMLEETRNYVKQRKAFGK-------TLAQLQVV 275 (372)
T ss_pred cHHHcCC-----CCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHhhHHH
Confidence 9999998 5444432 4456677889999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCCh
Q 007513 330 QNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGL 409 (600)
Q Consensus 330 q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l 409 (600)
|++|+++.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.++|+|||.||++++++
T Consensus 276 q~~la~~~~~~~~a~~~~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l 343 (372)
T cd01160 276 RHKIAELATKVAVTRAFLDNCAWRHEQ-------GR-----LDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPI 343 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHH
Confidence 999999999999999999998776541 11 123457889999999999999999999999999999999
Q ss_pred hHHhhhhcccccccchhHHHHHHHHHHH
Q 007513 410 PELFAVYVPACTYEGDNIVLLLQVARFL 437 (600)
Q Consensus 410 ~~~~rd~~~~~~~eG~~~v~~~~ia~~l 437 (600)
+++|||++...+++|++++++.+|++.+
T Consensus 344 ~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 344 ARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999865
No 18
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.9e-50 Score=424.35 Aligned_cols=359 Identities=18% Similarity=0.150 Sum_probs=296.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC------
Q 007513 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (600)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~------ 94 (600)
.-++||.++++++++|++++..-+. ....+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 4 ~~~~~~~~~~~~~r~~~~~~~~~~~--------~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~ 75 (380)
T PRK03354 4 NLNDEQELFVAGIRELMASENWEAY--------FAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWM 75 (380)
T ss_pred CCCHHHHHHHHHHHHHHHhccCChh--------HHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHH
Confidence 3468999999999999987532111 01112212234678999999998 6788887654421
Q ss_pred ------CchhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 95 ------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 95 ------~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
.+.++..+.......+..+|+++|+++|||++.+|+.++|+++|||++|||+..+.|+|+.+ +|+|+||
T Consensus 76 ~la~~~~s~~~~~~~~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~--~~g~~ln--- 150 (380)
T PRK03354 76 ELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRR--NGKVYLN--- 150 (380)
T ss_pred HHHhcCcchHHHHHhcccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEe--CCEEEEe---
Confidence 13222222212345788899999999999999999999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|+||++ +.+||+++|+|++..+.+..++..|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 151 --G~K~fis~-~~~ad~~~v~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 216 (380)
T PRK03354 151 --GSKCFITS-SAYTPYIVVMARDGASPDKPVYTEWFVD-------MSKPGIKVT-KLEKLG---LRMDSCCEITFDDVE 216 (380)
T ss_pred --eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceeEEEEE-------CCCCceEec-cccccC---CCCCCeEEEEEccEE
Confidence 99999999 8999999999997433233467889999 678999996 589999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++++ .+|.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.
T Consensus 217 Vp~~~~lg-----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~-------~i~~~q~ 278 (380)
T PRK03354 217 LDEKDMFG-----REGNGFN------RVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGE-------AIGRFQL 278 (380)
T ss_pred ecHHHcCC-----CCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-------cHHHhHH
Confidence 99999997 5554443 3344566789999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+|++|++|.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.|+|+|||+||+++++
T Consensus 279 vq~~la~~~~~~~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~ 346 (380)
T PRK03354 279 IQEKFAHMAIKLNSMKNMLYEAAWKADN-------GT-----ITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHR 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----cchhHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCh
Confidence 9999999999999999999998776542 11 11234678999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~ 441 (600)
++++|||++...+++|++++++..|++.+++.+
T Consensus 347 l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~ 379 (380)
T PRK03354 347 ISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQY 379 (380)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998754
No 19
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=7.4e-50 Score=424.72 Aligned_cols=355 Identities=21% Similarity=0.295 Sum_probs=296.2
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcCC-------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE------- 95 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~------- 95 (600)
++||.++++++++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.++.+.
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~---------~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l 72 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVA---------AEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEEL 72 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccch---------HHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHH
Confidence 47888999999999987532111 0011111233578999999998 67888876544221
Q ss_pred -----chhhHhh-HhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007513 96 -----PAFTDLH-WGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (600)
Q Consensus 96 -----~~~~~~~-~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~ 169 (600)
+.++.++ ..+....+..+|+++||++|||++.+|++++++++|||++|||+.++.|+|+.+ +|+|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~--~~g~~l~---- 146 (378)
T cd01157 73 AYGCTGVQTAIEANSLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKK--GDEYIIN---- 146 (378)
T ss_pred HhhhhHHHHHHHhhhhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEc--CCEEEEe----
Confidence 2222222 134444566789999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEccCCC---CCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecc
Q 007513 170 TSSKWWPGGLGKVSTHAVVYARLITDGQ---DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (600)
Q Consensus 170 ~G~K~~i~~~a~~Ad~~lV~A~~~~~~~---~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~ 246 (600)
|+|+||++ +..||+++|+|+++.++. ..++.+|+|| .+.|||++.+.|.++| +++++++.+.|||
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~s~~~~~~~ 214 (378)
T cd01157 147 -GQKMWITN-GGKANWYFLLARSDPDPKCPASKAFTGFIVE-------ADTPGIQPGRKELNMG---QRCSDTRGITFED 214 (378)
T ss_pred -eEEEeecC-CccCCEEEEEEEeCCcccCCCCCceEEEEEc-------CCCCCeeccCcccccC---CCCCCceEEEecc
Confidence 99999999 899999999999754321 3578899999 7789999999999999 9999999999999
Q ss_pred eecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 007513 247 VRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~ 326 (600)
|+||.+++|+ .+|.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 215 v~Vp~~~~lg-----~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~-------~i~~~ 276 (378)
T cd01157 215 VRVPKENVLI-----GEGAGFK------IAMGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGK-------LIAEH 276 (378)
T ss_pred EEECHHHcCC-----CCCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-------cHHHh
Confidence 9999999997 5554443 4556677889999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007513 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 406 (600)
|.+||+|++|.+.+++++.+++.+++.++. +. .....++++|+++++.+.++++.|+|+|||.||+++
T Consensus 277 q~vq~~la~~~~~~~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~ 344 (378)
T cd01157 277 QAVSFMLADMAMKVELARLAYQRAAWEVDS-------GR-----RNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSE 344 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 999999999999999999999999876642 11 123456789999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..|++.+++
T Consensus 345 ~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 345 YPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred CHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998864
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-48 Score=433.33 Aligned_cols=318 Identities=20% Similarity=0.192 Sum_probs=265.1
Q ss_pred HHHHHHHHHHccC-----CHHHHHHHHhhcCC--------------chhhHhhHhch-HHHHccCCCHHHHHhHHHHHhc
Q 007513 69 AAYAWKRIIELRL-----SEEEASMLRSSVDE--------------PAFTDLHWGMF-VPAIKGQGTDEQHQKWLPLAYK 128 (600)
Q Consensus 69 ~~~~~~~~~~~g~-----~~~~~g~~~~~~~~--------------~~~~~~~~~l~-~~~i~~~Gt~eq~~~~l~~l~~ 128 (600)
..++|+.+.+.|| |+++||.+.+.... +..+.+|.+++ +..|..+||+|||++|||++++
T Consensus 110 P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAs 189 (774)
T PRK13026 110 PPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLAD 189 (774)
T ss_pred CHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhC
Confidence 3568999999997 68888876543211 12234454454 3578899999999999999999
Q ss_pred cceeeEEeccCCCCCCCCCCCceEEEE---eCCCC---eEEEecCCCCccccccCCCCCCccEEEEEEEE-ccC-----C
Q 007513 129 MEIIGCYAQTELGHGSNVQGLETTATF---DPQTD---EFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL-ITD-----G 196 (600)
Q Consensus 129 g~~~~~~a~tE~~~Gsd~~~~~ttA~~---d~~~~---~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~-~~~-----~ 196 (600)
|+.++|||+|||++|||+.++.|+|+. +.+|+ +|+|| |+|.||++ |..||+++|++++ +++ +
T Consensus 190 Ge~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLN-----G~K~~IT~-A~~Ad~~~v~ar~~dpd~~~g~~ 263 (774)
T PRK13026 190 GTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLT-----WDKRYITL-APVATVLGLAFKLRDPDGLLGDK 263 (774)
T ss_pred CCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEE-----EEEEeecC-ccccCEEEEEEEeeCccccccCC
Confidence 999999999999999999999977652 12366 69999 99999999 8999999888774 322 2
Q ss_pred CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhH
Q 007513 197 QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLL 276 (600)
Q Consensus 197 ~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~ 276 (600)
++.|+++|+|| .+.|||++++.++++| +++. ++.++||||+||.+++||. .+..|.++. .+
T Consensus 264 ~~~GiT~fLVp-------~d~pGV~ig~~~~~lG---~~~~-~g~v~fdDV~VP~d~lLG~--~~~~G~G~~------~l 324 (774)
T PRK13026 264 KELGITCALIP-------TDHPGVEIGRRHNPLG---MAFM-NGTTRGKDVFIPLDWIIGG--PDYAGRGWR------ML 324 (774)
T ss_pred CCCceEEEEEE-------CCCCCeEeeccccccc---cCcc-cceEEEeeeEccHHHhcCC--cccCChHHH------HH
Confidence 34689999999 7889999999999999 7764 6899999999999999980 001266665 67
Q ss_pred HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 007513 277 YGTMVYVR-QTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLA---SAYAFRFVGEWLKW 352 (600)
Q Consensus 277 ~~~l~~~r-~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a---~~~a~~~~~~~a~~ 352 (600)
...++.+| +.+++.++|+++.+++.+++|+++|+|||+ ||++||.+||+|++|.+ .++++|.+++++.
T Consensus 325 ~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~-------pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~- 396 (774)
T PRK13026 325 VECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGM-------PIGQFEGVQEALARIAGNTYLLEAARRLTTTGL- 396 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 88899999 899999999999999999999999999999 99999999999999998 6778888777642
Q ss_pred HHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccc--CChhHHhhhhcccccccchhHHHH
Q 007513 353 LYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS--SGLPELFAVYVPACTYEGDNIVLL 430 (600)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~--~~l~~~~rd~~~~~~~eG~~~v~~ 430 (600)
+ .+. .....++++|+++++.+.+++++|+|+|||.||+++ ++++++|||++...+++|+|++++
T Consensus 397 --D-------~G~-----~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R 462 (774)
T PRK13026 397 --D-------LGV-----KPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTR 462 (774)
T ss_pred --H-------CCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHH
Confidence 2 111 134668999999999999999999999999999998 899999999999999999999999
Q ss_pred HHH
Q 007513 431 LQV 433 (600)
Q Consensus 431 ~~i 433 (600)
..+
T Consensus 463 ~l~ 465 (774)
T PRK13026 463 NLM 465 (774)
T ss_pred HHH
Confidence 744
No 21
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.5e-49 Score=425.96 Aligned_cols=366 Identities=22% Similarity=0.282 Sum_probs=302.5
Q ss_pred CCCCHHHHHHH-Hc--CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHHH
Q 007513 14 AQFDVDEMKIV-WA--GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEEA 86 (600)
Q Consensus 14 ~~f~~~~l~~~-~~--~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~ 86 (600)
+-|.+.-++.. ++ -++||.++++.+++|+.++.... . + +. .....+..++|+.+.++||. +++|
T Consensus 13 ~~~~~~~~~~~~~~~~~t~~~~~l~~~~~~f~~~~~~~~--~-----~-~~-~~~~~~p~~~~~~l~~~G~~~~~v~~~G 83 (412)
T PLN02526 13 SIFPPSVSDYYQFDDLLTPEEQALRKRVRECMEKEVAPI--M-----T-EY-WEKAEFPFHIIPKLGSLGIAGGTIKGYG 83 (412)
T ss_pred CCCChhhccccccccCCCHHHHHHHHHHHHHHHHhcccc--h-----H-HH-HHhCCCCHHHHHHHHHCCCCcCcccccC
Confidence 34666555444 33 36899999999999998753211 0 0 10 11112345789999999985 4677
Q ss_pred HHHHhhcC------------Cch--hhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceE
Q 007513 87 SMLRSSVD------------EPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETT 152 (600)
Q Consensus 87 g~~~~~~~------------~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~tt 152 (600)
|.+.++.+ .+. .+.+|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+.++.|+
T Consensus 84 G~G~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~ 163 (412)
T PLN02526 84 CPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTT 163 (412)
T ss_pred CCCcCHHHHHHHHHHHHhhCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeE
Confidence 76544321 121 2344655666678999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCC
Q 007513 153 ATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNG 232 (600)
Q Consensus 153 A~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~ 232 (600)
|+++ +|+|+|| |+|+||+| +..||+++|+|++.. +.++++|+|| .+.|||++.+.|+++|
T Consensus 164 a~~~--~gg~~ln-----G~K~~vs~-~~~Ad~~lv~a~~~~---~~~~~~flV~-------~~~~Gv~~~~~~~~~G-- 223 (412)
T PLN02526 164 ATKV--EGGWILN-----GQKRWIGN-STFADVLVIFARNTT---TNQINGFIVK-------KGAPGLKATKIENKIG-- 223 (412)
T ss_pred EEEE--CCEEEEE-----EEEeeecC-CCccCEEEEEEEeCC---CCCeEEEEEc-------CCCCCeEcCCCCCccC--
Confidence 9998 7899999 99999999 899999999999743 2368899999 7789999999999999
Q ss_pred CcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 007513 233 AYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQF 312 (600)
Q Consensus 233 ~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qf 312 (600)
+++++++.|.|+||+||++++|+ ..+ ... .....+..+|+.+++.++|+++++++.+++|+++|+||
T Consensus 224 -~r~t~s~~v~f~~v~Vp~~~~l~-----~~~-~~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~f 290 (412)
T PLN02526 224 -LRMVQNGDIVLKDVFVPDEDRLP-----GVN-SFQ------DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQF 290 (412)
T ss_pred -cCCCCeeEEEEeeEEECHHHhCC-----Ccc-cHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeC
Confidence 99999999999999999999996 222 111 34456778999999999999999999999999999999
Q ss_pred CCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHH
Q 007513 313 GSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIE 392 (600)
Q Consensus 313 g~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~ 392 (600)
|+ ||++||.+||++++|.+.+++++.+++++++.++. +. .....++++|+++++.+.++++
T Consensus 291 g~-------~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-------~~-----~~~~~~~~aK~~a~~~a~~v~~ 351 (412)
T PLN02526 291 GA-------PLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYES-------GK-----MTPGHASLGKAWITKKARETVA 351 (412)
T ss_pred CC-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CC-----CChHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999877652 11 1133478899999999999999
Q ss_pred HHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 393 ECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 393 ~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
.|+|+|||+||+++++++++|||++...+++|+++++++.+++.+++.
T Consensus 352 ~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 352 LGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999864
No 22
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-49 Score=420.53 Aligned_cols=356 Identities=17% Similarity=0.152 Sum_probs=296.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC-------
Q 007513 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------- 94 (600)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~------- 94 (600)
.++||.+++++++.|+.+...-. .....+....+..++|+.+.+.|| |+++||.+.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~ 76 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEE--------YFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEE 76 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHH
Confidence 46789999999999997642100 011112222234578999999997 6788887654421
Q ss_pred -----CchhhHhhHhchHHHHccCCCHHHHHhHHHHH-hccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 95 -----EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLA-YKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 95 -----~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l-~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
.+. ..++..+....|..+|+++||++|+|++ .+|+.++|+++|||++|||+..++|+|+++ +|+|+||
T Consensus 77 la~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~--~gg~~ln--- 150 (381)
T PRK12341 77 VSKCGAPA-FLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRK--NGKVYLN--- 150 (381)
T ss_pred HhhcChhH-HHHhhhhhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEe--CCEEEEE---
Confidence 122 2233334566788899999999999998 599999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCC-CCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecce
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~-~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v 247 (600)
|+|+|||| +..||+++|+|++..++. ..++.+|+|| .+.|||++. .|+++| +++++++.|.|+||
T Consensus 151 --G~K~~is~-~~~Ad~~~v~a~~~~~~~~~~~~~~~lV~-------~~~~gv~~~-~~~~~G---~~~~~~~~v~~~~v 216 (381)
T PRK12341 151 --GQKTFITG-AKEYPYMLVLARDPQPKDPKKAFTLWWVD-------SSKPGIKIN-PLHKIG---WHMLSTCEVYLDNV 216 (381)
T ss_pred --eEEEEEcC-CccCCEEEEEEEcCCCCCCCCceEEEEEe-------CCCCceeec-cccccc---CCCCCceEEEECcE
Confidence 99999999 899999999999754432 3478899999 778999995 589999 99999999999999
Q ss_pred ecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 007513 248 RIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 ~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q 327 (600)
+||.+++|+ .+|.+.. .+...+..+|+.+++.++|+++++++.+++|+++|+|||+ ||.++|
T Consensus 217 ~Vp~~~~lg-----~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~ 278 (381)
T PRK12341 217 EVEESDLVG-----EEGMGFL------NVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGK-------PIGHNQ 278 (381)
T ss_pred EecHHHcCC-----CCChHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCc-------cHHHhH
Confidence 999999998 5554443 3445677899999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007513 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 407 (600)
.+|++|+++.+.+++++.+++++++.+++ +. .....++++|+++++.+.++++.++|+|||.||..++
T Consensus 279 ~v~~~la~~~~~~~aar~~~~~a~~~~d~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~ 346 (381)
T PRK12341 279 LIQEKLTLMAIKIENMRNMVYKVAWQADN-------GQ-----SLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEA 346 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 99999999999999999999998776542 11 1234578999999999999999999999999999999
Q ss_pred ChhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 408 GLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 408 ~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
+++++|||++...+++|++++++..+++.+++.
T Consensus 347 ~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~ 379 (381)
T PRK12341 347 RVSRFWRDVRCERIGGGTDEIMIYIAGRQILKD 379 (381)
T ss_pred HHHHHHHHhhcceecCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999864
No 23
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=2.8e-49 Score=423.16 Aligned_cols=359 Identities=20% Similarity=0.263 Sum_probs=299.5
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhc-------
Q 007513 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV------- 93 (600)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~------- 93 (600)
.-+++|.++++.+++|+.+...-.. . ..++...+ .....+|+.+.+.|| |+++||.+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~a-~--~~d~~~~~----p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e 97 (404)
T PLN02519 25 LFDDTQLQFKESVQQFAQENIAPHA-A--AIDATNSF----PKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAME 97 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCcch-H--HHHhcCCC----CchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 3457899999999999987422110 0 01111111 112347999999997 677888764432
Q ss_pred -----CCchh--hHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007513 94 -----DEPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (600)
Q Consensus 94 -----~~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlnt 166 (600)
+.+.+ +.+|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+..+.|+|+++ +|+|+||
T Consensus 98 ~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~--~~g~~ln- 174 (404)
T PLN02519 98 EISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERV--DGGYVLN- 174 (404)
T ss_pred HHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEe--CCEEEEE-
Confidence 11222 3456556667888999999999999999999999999999999999999999999988 7899999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecc
Q 007513 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (600)
Q Consensus 167 p~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~ 246 (600)
|+|+||++ +..||+++|+|+++.++++.|+.+|+|| .+.|||++.+.|+++| +++++++.|.|+|
T Consensus 175 ----G~K~~vs~-a~~ad~~~v~a~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~G---~rgt~s~~v~f~~ 239 (404)
T PLN02519 175 ----GNKMWCTN-GPVAQTLVVYAKTDVAAGSKGITAFIIE-------KGMPGFSTAQKLDKLG---MRGSDTCELVFEN 239 (404)
T ss_pred ----eEEEeecC-CCcCCEEEEEEEeCCCCCCCeeEEEEEe-------CCCCCeeccCcccccC---CCCCCeeEEEeCe
Confidence 99999999 8999999999998654445678999999 7789999999999999 9999999999999
Q ss_pred eecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 007513 247 VRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~ 326 (600)
|+||.+++++ ..|.++. .....+...|+.+++.++|+++++++.+++|+++|.|||. ||.++
T Consensus 240 v~Vp~~~~lg-----~~~~G~~------~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~-------pl~~~ 301 (404)
T PLN02519 240 CFVPEENVLG-----QEGKGVY------VMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGR-------PIGEF 301 (404)
T ss_pred EEecHHHcCC-----CCCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCc-------cHHHh
Confidence 9999999998 4444432 3455677899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007513 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 406 (600)
|.+|+++++|.+.++++++++++++..++. +. ......+.+|.++++.+.+++..++|+|||+||+++
T Consensus 302 ~~v~~~la~~~~~l~aar~~~~~aa~~~~~-------~~-----~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~ 369 (404)
T PLN02519 302 QFIQGKLADMYTSLQSSRSYVYSVARDCDN-------GK-----VDRKDCAGVILCAAERATQVALQAIQCLGGNGYINE 369 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence 999999999999999999999999877652 11 112346678999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
++++++|||++...+++|++++++..+++.+|+
T Consensus 370 ~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~ 402 (404)
T PLN02519 370 YPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFK 402 (404)
T ss_pred ChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999886
No 24
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=3.2e-49 Score=419.60 Aligned_cols=355 Identities=21% Similarity=0.267 Sum_probs=299.3
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC--------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~-------- 94 (600)
++|+.++++++++|+.++..... ...+........+|+.+.+.|| |+++||.+.++.+
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l 73 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLA---------AKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEI 73 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHH
Confidence 47888999999999987432110 0111111233568999999997 6788886544321
Q ss_pred ----Cchh--hHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 95 ----EPAF--TDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 95 ----~~~~--~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
.+.+ +..|..++...|..+|+++|+++|+|++.+|+.++++++|||++|||+..+.|+|+++ +|+|+||
T Consensus 74 a~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~--~~g~~l~--- 148 (376)
T cd01156 74 SRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKK--GDRYVLN--- 148 (376)
T ss_pred hccchhHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEe--CCEEEEE---
Confidence 1322 3345555666788999999999999999999999999999999999999999999988 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|+||+| +..||+++|+|++..+++..++.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+
T Consensus 149 --G~k~~vs~-~~~a~~~lv~a~~~~~~~~~~~~~~lv~-------~~~~gv~~~~~~~~~G---~~~~~~~~v~~~~v~ 215 (376)
T cd01156 149 --GSKMWITN-GPDADTLVVYAKTDPSAGAHGITAFIVE-------KGMPGFSRAQKLDKLG---MRGSNTCELVFEDCE 215 (376)
T ss_pred --EEEEEecC-CCcCCEEEEEEEeCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---CCCCCceEEEeCceE
Confidence 99999999 8999999999997654444678999999 7789999999999999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++|+ ..+.+.. .+...+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 216 Vp~~~~lg-----~~~~g~~------~~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~-------~i~~~~~ 277 (376)
T cd01156 216 VPEENILG-----GENKGVY------VLMSGLDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQ-------PIGEFQL 277 (376)
T ss_pred ecHHHcCC-----CCCchHH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCc-------chHHhHH
Confidence 99999998 4454443 4566778899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+|+++++|.+.+++++++++++++.++. +. . ....++.+|+++++.+.++++.++|+|||+||+++++
T Consensus 278 v~~~la~~~~~l~aar~~~~~aa~~~d~-------~~-~----~~~~~~~~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~ 345 (376)
T cd01156 278 VQGKLADMYTRLNASRSYLYTVAKACDR-------GN-M----DPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYP 345 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCH
Confidence 9999999999999999999999877652 11 1 1234677899999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
++++|||++...+++|++++++..|++.++|
T Consensus 346 l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 346 TGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998764
No 25
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=3e-49 Score=423.73 Aligned_cols=354 Identities=20% Similarity=0.232 Sum_probs=297.6
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC------
Q 007513 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (600)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~------ 94 (600)
.-+++|.++++.+++|+.+...... ...+....+..++|+.+.+.|| |+++||.+.++..
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e 106 (410)
T PTZ00461 36 NPTPEHAALRETVAKFSREVVDKHA---------REDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHH 106 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccH---------HHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHH
Confidence 4568899999999999977422110 0111112244678999999997 6778886644321
Q ss_pred ------C--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEec
Q 007513 95 ------E--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHS 166 (600)
Q Consensus 95 ------~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlnt 166 (600)
. +.++..|..++...+..+|+++|+++|||++.+|+.++|+++|||++|||+.++.|+|+++. +++|+||
T Consensus 107 ~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~-~gg~~L~- 184 (410)
T PTZ00461 107 ELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDS-NGNYVLN- 184 (410)
T ss_pred HHHhhCchHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcC-CCeEEEE-
Confidence 1 12334455456667888999999999999999999999999999999999999999999873 2479999
Q ss_pred CCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecc
Q 007513 167 PTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEH 246 (600)
Q Consensus 167 p~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~ 246 (600)
|+|+||+| +..||+++|+|+++ .++.+|+|| .+.|||++.+.|+++| +++++++.+.|+|
T Consensus 185 ----G~K~~vs~-a~~Ad~~lv~a~~~-----~~~~~flVp-------~~~~Gv~v~~~~~~~G---~r~~~~~~l~f~~ 244 (410)
T PTZ00461 185 ----GSKIWITN-GTVADVFLIYAKVD-----GKITAFVVE-------RGTKGFTQGPKIDKCG---MRASHMCQLFFED 244 (410)
T ss_pred ----eEEEeECC-CccCCEEEEEEEeC-----CceEEEEEe-------CCCCCeecCCCCcccC---CCCCceEEEEEcc
Confidence 99999999 89999999999853 257899999 7789999999999999 9999999999999
Q ss_pred eecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccch
Q 007513 247 VRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDY 326 (600)
Q Consensus 247 v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~ 326 (600)
|+||.+++|+ .+|.+.. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++|
T Consensus 245 v~Vp~~~~lg-----~~g~g~~------~~~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~i~~~ 306 (410)
T PTZ00461 245 VVVPAENLLG-----EEGKGMV------GMMRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGK-------PISNF 306 (410)
T ss_pred eecCHHHhCC-----CCCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCc-------CHHhh
Confidence 9999999998 5554443 4556678899999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccc
Q 007513 327 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS 406 (600)
Q Consensus 327 q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~ 406 (600)
|.+|++|+++.+.+++++.+++.+++.++. ++ .....++++|.++++.+.++++.++|+|||+||+.+
T Consensus 307 q~vq~~la~~~~~l~aar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~ 374 (410)
T PTZ00461 307 GQIQRYIAEGYADTEAAKALVYSVSHNVHP-------GN-----KNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRD 374 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CC-----cchHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 999999999999999999999998776531 11 123456789999999999999999999999999999
Q ss_pred CChhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 407 SGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 407 ~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
++++++|||++...+++|++++++..+++.+++.
T Consensus 375 ~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 375 MPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred CHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998764
No 26
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=4.5e-49 Score=419.92 Aligned_cols=360 Identities=16% Similarity=0.167 Sum_probs=286.4
Q ss_pred cCChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC------
Q 007513 26 AGSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD------ 94 (600)
Q Consensus 26 ~~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~------ 94 (600)
..++||.++++++++|+.++........ ......++. .....+|+.+.++|| |+++||.+.++.+
T Consensus 3 ~lteeq~~l~~~~r~f~~~~~~~~~~~~--~~~~~~~~~--~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~e 78 (395)
T TIGR03204 3 AFSKEEQAFRDEVRSFFKDNVPADTRQK--LVEGRHLTK--DEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNE 78 (395)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChhhhhh--hhccCCCCh--HHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHH
Confidence 3468999999999999987543211100 000000000 112368999999998 5788887654422
Q ss_pred ------CchhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 95 ------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 95 ------~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
.+.|+..+..+.+..|..+|+++||++|||++++|+.++|+++|||++|||+..+.|+|+++ +|+|+||
T Consensus 79 elg~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~--g~~~~Ln--- 153 (395)
T TIGR03204 79 ELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKK--GDKWIIN--- 153 (395)
T ss_pred HHHhcCCCccchhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEc--CCEEEEe---
Confidence 24454434335556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCC-CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecce
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v 247 (600)
|+|+||++ +..||+++|+|+++.++ +..|+++|+|| .+.|||++.+...+.| +.+++.|.|+||
T Consensus 154 --G~K~~vt~-a~~Ad~~lv~a~~~~~~~~~~g~~~flV~-------~~~~Gv~~~~~~~~~~-----~~~~~~v~f~~v 218 (395)
T TIGR03204 154 --GQKTWTTL-AQHADWIFCLCRTDPTAKKQMGISFILVD-------MKSKGITVRPIQTIDG-----GVEVNEVFFDDV 218 (395)
T ss_pred --eEEEeecC-CccCCeEEEEEEeCCCCCCCCCeEEEEEe-------CCCCCeEecChhhccC-----CCceeEEEEcce
Confidence 99999999 89999999999975322 34678999999 7789999987655432 667899999999
Q ss_pred ecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 007513 248 RIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 ~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q 327 (600)
+||.+++|+ ..+.++. .....+...|+.+++ +|.++++++.+++|+++|+|||+ ||++||
T Consensus 219 ~Vp~~~~lg-----~~~~g~~------~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~-------~i~~~q 278 (395)
T TIGR03204 219 EVPYENLVG-----EENKGWD------YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGK-------PVIEDA 278 (395)
T ss_pred EEcHHHcCC-----CCCchHH------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCC-------ccccCH
Confidence 999999997 4444443 556677788888765 79999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHH----------
Q 007513 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKL---------- 397 (600)
Q Consensus 328 ~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~---------- 397 (600)
.+||+|++|.+.++++|.++++++..... .+.. .....++++|.++++.+.+++++|+|+
T Consensus 279 ~vq~~la~~~~~~~aar~l~~~aa~~~~~------~~~~----~~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~ 348 (395)
T TIGR03204 279 KFREKLAAVEIELKALELTQLRVVADEGK------HGKG----KPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDV 348 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCC----CCcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999998642210 0010 112458899999999999999999985
Q ss_pred hcccccccc----CChhHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 398 CGGHGYLCS----SGLPELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 398 ~GG~G~~~~----~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
|||.||+.+ ++++++|||++...+++|++++++..|++.+|+
T Consensus 349 ~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l~ 394 (395)
T TIGR03204 349 HGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLG 394 (395)
T ss_pred cccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHcC
Confidence 889999955 579999999999999999999999999998763
No 27
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=6.9e-49 Score=416.21 Aligned_cols=350 Identities=20% Similarity=0.190 Sum_probs=291.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC--------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~-------- 94 (600)
++||.++++.+++|+.+...... ...+....+...+|+.+.+.|| |+++||.+.++.+
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~---------~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~l 72 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGF---------KERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQI 72 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcch---------HHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHH
Confidence 46888999999999987432111 0011111244678999999997 6788887654322
Q ss_pred ----CchhhHh-hHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007513 95 ----EPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (600)
Q Consensus 95 ----~~~~~~~-~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~ 169 (600)
.+.++.. ...+++..+..+|+++|+++|||++.+|+.++++++|||++|||+.++.|+|+++ +|+|+||
T Consensus 73 a~~~~s~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~--~~g~~ln---- 146 (372)
T TIGR03207 73 ARADLSMSYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERD--GDDYVLN---- 146 (372)
T ss_pred HhhCccHHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEe--CCEEEEE----
Confidence 1333221 1234556788899999999999999999999999999999999999999999987 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEccCC-CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 170 TSSKWWPGGLGKVSTHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 170 ~G~K~~i~~~a~~Ad~~lV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|.||+| +..||+++|+|++..++ ...|+.+|+|| .+.|||++. .|+++| +++++++.|.|+||+
T Consensus 147 -G~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~gv~~~-~~~~~G---~r~~~~~~v~f~~v~ 213 (372)
T TIGR03207 147 -GEKTSISA-ADQADAAVVFARTGSEAEGARGISAFLVP-------MDLPGITRN-RFDCHG---QRAIGRGSIFFENVR 213 (372)
T ss_pred -EEEEEEcC-CCcCCEEEEEEEcCCCCCCCCceEEEEEc-------CCCCCeecC-cchhcc---CCCCCeeEEEECcee
Confidence 99999999 88999999999975322 23578899999 778999985 589999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||.+++|+ .++.++. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||++||.
T Consensus 214 Vp~~~~lg-----~~~~g~~------~~~~~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~-------~i~~~q~ 275 (372)
T TIGR03207 214 VPADHMLG-----NEGQGFV------QVMQGFDFSRALIGLQVLAVARAALDETWRYVAERQAFGK-------PLSAFQG 275 (372)
T ss_pred ccHHHcCC-----CCChhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------chhhhHh
Confidence 99999997 5554443 4556788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+||++++|.+.+++++++++++++.++. +. .....++++|+++++.+.++++.|+|+|||.||+++ +
T Consensus 276 v~~~la~~~~~~~~ar~l~~~aa~~~~~-------~~-----~~~~~~~~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~ 342 (372)
T TIGR03207 276 VSHPLADAETQVEAARLLCLQTLWLKDH-------GL-----PHTSEAAMCKWWAPKLAYDVIHQCLLTHGHGGYDRG-D 342 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-----CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCc-h
Confidence 9999999999999999999999876642 11 113357889999999999999999999999999999 9
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVARF 436 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~~ 436 (600)
++++|||++...+++|++++++..|++.
T Consensus 343 l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 343 MEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 9999999999999999999999999873
No 28
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-49 Score=372.98 Aligned_cols=355 Identities=22% Similarity=0.266 Sum_probs=297.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHH-----hh-----
Q 007513 27 GSRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSE----EEASMLR-----SS----- 92 (600)
Q Consensus 27 ~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~g~~~-----~~----- 92 (600)
.++|+..+|+++|.++.+.... ......|.+. ++.++..+++.+|+.. -||=.+. ++
T Consensus 55 LT~dE~air~~~Reycq~~l~P---rvtea~r~e~------F~~~i~pemGsmGvlG~tikGYGCaG~S~vaygl~~rEv 125 (432)
T KOG0138|consen 55 LTEDEIAIRDTFREYCQERLMP---RVTEANRNEV------FDREIIPEMGSMGVLGPTIKGYGCAGVSSVAYGLLAREV 125 (432)
T ss_pred cCHHHHHHHHHHHHHHHHHhhh---HHHHHhhhcc------CChhhhhhhhccccccCcccCcCCCchHHHHHHHHHHHH
Confidence 3578889999999999764211 0011122222 3456677777777631 1211111 11
Q ss_pred --cCC--chhhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 93 --VDE--PAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 93 --~~~--~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
++. ...+.+|.++...+|..+|+|+||++|||.+++|+.+|||++|||.||||+.+++|+|+||..+..|.||
T Consensus 126 eRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN--- 202 (432)
T KOG0138|consen 126 ERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN--- 202 (432)
T ss_pred HHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC---
Confidence 111 3467889999999999999999999999999999999999999999999999999999999877789999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEeccee
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVR 248 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~ 248 (600)
|+|.||+| ++.||++||+||...++ .+.-|||+ ++.||++...+..|++ ++.+.+|.|.+|+|+
T Consensus 203 --GsKtWI~n-sp~aDl~vvwAr~~t~n---~I~GFi~~-------k~~~GL~apkI~gK~s---LRas~tG~Ilmd~V~ 266 (432)
T KOG0138|consen 203 --GSKTWITN-SPMADLFVVWARCETDN---KIRGFILE-------KGMRGLSAPKIEGKFS---LRASATGMILMDGVE 266 (432)
T ss_pred --CeeeeecC-CcccceEEEEEecccCC---ceeeEEEe-------cCCCCCcCCCcCCeee---eeecccCceeecCCc
Confidence 99999999 89999999999986544 47789999 8999999999999999 999999999999999
Q ss_pred cCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHH
Q 007513 249 IPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKT 328 (600)
Q Consensus 249 VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~ 328 (600)
||++++|. .-..+. --++.++.+|..++...+|++..+++++.+|+..|+|||+ |++.+|.
T Consensus 267 VPeE~~LP------g~~s~q------gpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~-------PLAanQL 327 (432)
T KOG0138|consen 267 VPEENLLP------GASSLQ------GPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGR-------PLAANQL 327 (432)
T ss_pred CChhhcCC------CccccC------CchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCC-------chhHHHH
Confidence 99999995 222222 2356788899999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCC
Q 007513 329 QQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSG 408 (600)
Q Consensus 329 ~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~ 408 (600)
+|.+|++|+..+.+.-.+++++..+.|+. ......++..|.+.+-.+.++++.++++.||.|...|+-
T Consensus 328 ~Q~Kladmltei~lgl~~clrl~rLkd~g------------~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyh 395 (432)
T KOG0138|consen 328 IQKKLADMLTEITLGLQACLRLGRLKDQG------------KATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYH 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc------------cCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHH
Confidence 99999999999999999999988877631 112334788999999999999999999999999999999
Q ss_pred hhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 409 LPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 409 l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
+-+.+-+.....||||+-+++...++|.+-+.
T Consensus 396 v~rh~~nLE~vnTYEGThDihaLilGRaiTGi 427 (432)
T KOG0138|consen 396 VIRHAMNLEAVNTYEGTHDIHALILGRAITGI 427 (432)
T ss_pred HHHHHcCccceecccccchHHHHhhhhhhhhh
Confidence 99999999999999999999999999988653
No 29
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.4e-47 Score=409.17 Aligned_cols=359 Identities=18% Similarity=0.228 Sum_probs=289.9
Q ss_pred hHHHHHHHHHHHhcCCCCCCCcccCCCHH---H--HHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcCC-----
Q 007513 31 AFQVSDRIARLVASDPAFRKDNRAMLSRK---E--LFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVDE----- 95 (600)
Q Consensus 31 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~~----- 95 (600)
..++++++++|++++..... . ..++. + ....+......+|+.+.+.|| |+++||.+.++.+.
T Consensus 3 ~~~~~~~~r~~~~~~~~p~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e 79 (394)
T cd01155 3 AQELRARVKAFMEEHVYPAE-Q--EFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAE 79 (394)
T ss_pred HHHHHHHHHHHHHHhcCccH-H--HHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHH
Confidence 35789999999986532100 0 01100 0 000001233578999999998 67888876544221
Q ss_pred --------chhhHhhH--hchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEE
Q 007513 96 --------PAFTDLHW--GMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVI 164 (600)
Q Consensus 96 --------~~~~~~~~--~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ttA~~d~~~~~~vl 164 (600)
+.++..+. ......|..+|+++|+++|||++.+|+.++|+++|||+ .|||+..+.|+|+++ +|+|+|
T Consensus 80 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~--~~g~~L 157 (394)
T cd01155 80 ETGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERD--GDDYVI 157 (394)
T ss_pred HHhhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEE--CCEEEE
Confidence 12222221 12334688999999999999999999999999999997 579999999999988 789999
Q ss_pred ecCCCCccccccCCCCCC--ccEEEEEEEEccCC--CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCc--cc
Q 007513 165 HSPTLTSSKWWPGGLGKV--STHAVVYARLITDG--QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNT--MD 238 (600)
Q Consensus 165 ntp~~~G~K~~i~~~a~~--Ad~~lV~A~~~~~~--~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~--~~ 238 (600)
| |+|+||+| +.+ +|+++|+|++..++ +..++.+|+|| .+.|||++.+.|+++| +++ ++
T Consensus 158 n-----G~k~~vs~-~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp-------~~~~Gv~i~~~~~~~G---~r~~~t~ 221 (394)
T cd01155 158 N-----GRKWWSSG-AGDPRCKIAIVMGRTDPDGAPRHRQQSMILVP-------MDTPGVTIIRPLSVFG---YDDAPHG 221 (394)
T ss_pred E-----EEEEEEcC-CCCCCCCEEEEEEEeCCCcCCCCCceEEEEEe-------CCCCCeEeeccccccC---CCCCCCC
Confidence 9 99999999 644 78999999975432 23578899999 7789999999999999 997 56
Q ss_pred ceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 007513 239 NGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGG 318 (600)
Q Consensus 239 ~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~ 318 (600)
++.|.|+||+||.+++|+ .+|.+.. .+...+...|+..++.++|+++++++.+++|+++|+|||+
T Consensus 222 s~~v~f~dv~Vp~~~~lg-----~~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~---- 286 (394)
T cd01155 222 HAEITFDNVRVPASNLIL-----GEGRGFE------IAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGK---- 286 (394)
T ss_pred eeEEEEccEEecHHHcCC-----CCChHHH------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCC----
Confidence 789999999999999997 5554443 5566777899999999999999999999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007513 319 PETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLC 398 (600)
Q Consensus 319 ~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~ 398 (600)
||+++|.+|++|++|.+.+++++++++.+++.+++. . ..+....++++|+++++.+.++++.|+|+|
T Consensus 287 ---~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~-------~---~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~ 353 (394)
T cd01155 287 ---KLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTV-------G---NKAARKEIAMIKVAAPRMALKIIDRAIQVH 353 (394)
T ss_pred ---cHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------C---CcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998876521 0 112345678999999999999999999999
Q ss_pred ccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHH
Q 007513 399 GGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 399 GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll 438 (600)
||+||+++++++++|||++...+++|++++++..|++.++
T Consensus 354 Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 354 GAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred cCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875
No 30
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3.5e-47 Score=403.68 Aligned_cols=354 Identities=25% Similarity=0.308 Sum_probs=296.8
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhc----------
Q 007513 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV---------- 93 (600)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~---------- 93 (600)
+||.++++.+++|+.+...... ...+....+....|+.+.+.|| |+++||.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~a---------~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~ 71 (373)
T cd01158 1 EEHQMIRKTVRDFAEKEIAPLA---------AEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELA 71 (373)
T ss_pred ChHHHHHHHHHHHHHHhcccch---------HHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHH
Confidence 3678999999999975322111 0011111133568899999887 677887654331
Q ss_pred --CCch--hhHhhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCC
Q 007513 94 --DEPA--FTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTL 169 (600)
Q Consensus 94 --~~~~--~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~ 169 (600)
+.+. .+.+|..++...+..+|+++|+++|++++.+|+.++++++|||++|||+..+.|+|+++ +++|+||
T Consensus 72 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~--~~g~~l~---- 145 (373)
T cd01158 72 KVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKD--GDDYVLN---- 145 (373)
T ss_pred hhCccHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEe--CCEEEEe----
Confidence 1122 23456556667788999999999999999999999999999999999999999999998 7899999
Q ss_pred CccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceec
Q 007513 170 TSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRI 249 (600)
Q Consensus 170 ~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~V 249 (600)
|+|.|++| +..||+++|+|+...+++..++.+|+|| .+.|||++.+.|+++| +++++++.|.|+||+|
T Consensus 146 -G~k~~vsg-~~~ad~~lv~a~~~~~~~~~~~~~~lvp-------~~~~gv~i~~~~~~~G---~~g~~s~~v~~~~v~V 213 (373)
T cd01158 146 -GSKMWITN-GGEADFYIVFAVTDPSKGYRGITAFIVE-------RDTPGLSVGKKEDKLG---IRGSSTTELIFEDVRV 213 (373)
T ss_pred -eEEEEEcC-CCcCCEEEEEEEcCCCCCCCceEEEEEc-------CCCCCeecCCcccccc---cCCCCceEEEeCcEEe
Confidence 99999999 8999999999987544344578899999 6789999999999999 9999999999999999
Q ss_pred CcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHH
Q 007513 250 PRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQ 329 (600)
Q Consensus 250 P~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~ 329 (600)
|.+++|+ ..+.++. .....+..+|+.+++.++|+++++++.+++|+++|+|||. |+.+||.+
T Consensus 214 p~~~~lg-----~~~~g~~------~~~~~~~~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~-------~~~~~~~v 275 (373)
T cd01158 214 PKENILG-----EEGEGFK------IAMQTLDGGRIGIAAQALGIAQAALDAAVDYAKERKQFGK-------PIADFQGI 275 (373)
T ss_pred cHHHcCC-----CCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCC-------cHHHhHHH
Confidence 9999997 4444332 4455677889999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCCh
Q 007513 330 QNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGL 409 (600)
Q Consensus 330 q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l 409 (600)
|++++++.+.+++++.+++.+++.++. + .+....++.+|+++++.+.++++.++++|||.||+.++++
T Consensus 276 ~~~la~~~~~l~aa~~~~~~aa~~~~~-------~-----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~G~~g~~~~~~l 343 (373)
T cd01158 276 QFKLADMATEIEAARLLTYKAARLKDN-------G-----EPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPV 343 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-------C-----CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCCCChH
Confidence 999999999999999999998876641 1 1234557889999999999999999999999999999999
Q ss_pred hHHhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 410 PELFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 410 ~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
+++|||++...+++|++++++.++++.+||
T Consensus 344 ~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 344 ERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999875
No 31
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=5.2e-47 Score=404.99 Aligned_cols=359 Identities=26% Similarity=0.341 Sum_probs=294.2
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhh-----------
Q 007513 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSS----------- 92 (600)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~----------- 92 (600)
+++.++++.+++++.++..... . ...+.. ... ....++|+.+.+.|+ |+++||.+.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~-~~~--~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~ 80 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEA-A--EIDRRI-EDE--RFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELA 80 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcch-h--hhhhhc-ccc--cCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHH
Confidence 5677889999999987543100 0 011100 001 111467788888886 67888743322
Q ss_pred -cCCc--hhhHhhHh---chHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCc-eEEEEeCCCCeEEEe
Q 007513 93 -VDEP--AFTDLHWG---MFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLE-TTATFDPQTDEFVIH 165 (600)
Q Consensus 93 -~~~~--~~~~~~~~---l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~-ttA~~d~~~~~~vln 165 (600)
.+.+ ..+.++.. .....+..+|+++|+++|||++.+|+.++|+++|||++|||+..+. |+++.+ +++|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~--~g~~~ln 158 (393)
T COG1960 81 RADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRD--DGDYVLN 158 (393)
T ss_pred hhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEec--CCCEEEE
Confidence 1111 12222221 2334677899999999999999999999999999999999999998 666664 3449999
Q ss_pred cCCCCccccccCCCCCCccEEEEEEEEccC-CCCCceEEEEEEeccCCCCCC-CCCeEEeecCCccCCCCcCcccceeEE
Q 007513 166 SPTLTSSKWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSP-LPGITIGDIGMKFGNGAYNTMDNGVLR 243 (600)
Q Consensus 166 tp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~-~~~~g~~~flV~~rd~~~~~~-~pGv~v~~~~~~~G~~~~~~~~~~~v~ 243 (600)
|+|+|||| +..||+++|+|+++.+ .+.+|+++|+|| .+ .|||++.+.+.+.| +++++++.|.
T Consensus 159 -----G~K~~is~-~~~ad~~~v~Ar~~~~~~~~~gis~flV~-------~~~~~Gv~~~~~~~~~G---~r~~~~~~v~ 222 (393)
T COG1960 159 -----GQKIWISN-APVADWLLVLARTDPAPGKHKGISLFLVP-------KDLTPGVSVGPILKKMG---LRGSATGEVF 222 (393)
T ss_pred -----eEEEEEcC-CCCCCEEEEEEEcCCcccccCceEEEEEe-------CCCCCCeeeccccCcCC---cCCCCeeEEE
Confidence 99999999 8999999999998765 355799999999 67 59999999876447 9999999999
Q ss_pred ecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccc
Q 007513 244 FEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQV 323 (600)
Q Consensus 244 fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i 323 (600)
|+||+||.+++|+ +.|.++. .+...+..+|+.+++.++|.++++++.+++|+++|+|||+ ||
T Consensus 223 f~~v~vp~~~lig-----~~~~g~~------~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~-------~i 284 (393)
T COG1960 223 FDDVRVPAENLLG-----EEGDGFK------IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGR-------PI 284 (393)
T ss_pred ECCeeccHHHcCC-----cCCchHH------HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC-------ch
Confidence 9999999999997 6666665 6788899999999999999999999999999999999997 99
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Q 007513 324 IDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGY 403 (600)
Q Consensus 324 ~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~ 403 (600)
++||.+|++|+++.+.+++++.+++++++..+.. . .....++++|.++++.+.++++.++|+|||.||
T Consensus 285 ~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~-------~-----~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~ 352 (393)
T COG1960 285 ADFQLVQFKLADMAAELEAARLLVLRAAELADAG-------D-----DAGAEAAMAKLFATEAALEVADEAVQVHGGYGY 352 (393)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999987766521 1 122678999999999999999999999999999
Q ss_pred cccCChhHHhhhhcccccccchhHHHHHHHHHHHHHHH
Q 007513 404 LCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKTV 441 (600)
Q Consensus 404 ~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~~ 441 (600)
+.+++++++|||++...+++|++++++..+++.+++..
T Consensus 353 ~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 353 TEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred ccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999998753
No 32
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=4.2e-46 Score=429.74 Aligned_cols=289 Identities=19% Similarity=0.256 Sum_probs=257.1
Q ss_pred hHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC--CC
Q 007513 106 FVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG--KV 182 (600)
Q Consensus 106 ~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a--~~ 182 (600)
.+.+|..+|+++||++|||++++|++++|+++|||+ +|||+.++.|+|+++ +|+|+|| |+|+||+| + ..
T Consensus 525 ~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~~~~t~a~~~--g~g~vLn-----G~K~~vtg-a~~~~ 596 (822)
T PLN02876 525 NMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQ--GDSYVIN-----GTKWWTSG-AMDPR 596 (822)
T ss_pred cHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccccceEEEEEc--CCEEEEE-----eEEEEecC-CCCCC
Confidence 345788999999999999999999999999999997 689999999999987 7899999 99999999 6 47
Q ss_pred ccEEEEEEEEccCC-CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcc--cceeEEecceecCcCccccccc
Q 007513 183 STHAVVYARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM--DNGVLRFEHVRIPRNQMLMVSQ 259 (600)
Q Consensus 183 Ad~~lV~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~--~~~~v~fd~v~VP~~~lL~~~~ 259 (600)
||+++|+|++..++ +..++.+|+|| .+.|||++.+.|.++| +++. +++.|.||||+||.+++|+
T Consensus 597 ad~~lv~ar~~~~~~~~~~~s~flV~-------~~~pGv~i~~~~~~~G---~r~~~~~~~~v~fd~V~Vp~~~~lg--- 663 (822)
T PLN02876 597 CRVLIVMGKTDFNAPKHKQQSMILVD-------IQTPGVQIKRPLLVFG---FDDAPHGHAEISFENVRVPAKNILL--- 663 (822)
T ss_pred CCEEEEEEecCCCCCCCCcceEEEEe-------CCCCCceeecccceec---cCCCCCCeeEEEEcceeechhheec---
Confidence 99999999975432 23568899999 6789999999999999 9874 5789999999999999997
Q ss_pred ccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHH
Q 007513 260 VTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLAS 339 (600)
Q Consensus 260 v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~ 339 (600)
..|.++. .+...+..+|+.+++.++|++++|++.+++|+++|+|||+ ||++||.+||+|++|.+.
T Consensus 664 --~~g~g~~------~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~-------~i~~~q~vq~~la~~~~~ 728 (822)
T PLN02876 664 --GEGRGFE------IAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGK-------LIAQHGSFLSDLAKCRVE 728 (822)
T ss_pred --CCCchHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------chhhCHHHHHHHHHHHHH
Confidence 4554443 5566788899999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhccc
Q 007513 340 AYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPA 419 (600)
Q Consensus 340 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~ 419 (600)
+++++++++.+++.++.. . ..+....++++|+++++.+.+++++|+|+|||+||+++++++++|||++..
T Consensus 729 leaar~l~~~aa~~~d~~-------~---~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rdar~~ 798 (822)
T PLN02876 729 LEQTRLLVLEAADQLDRL-------G---NKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTL 798 (822)
T ss_pred HHHHHHHHHHHHHHHHcc-------C---CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHhhhhc
Confidence 999999999998877521 0 012345688999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 007513 420 CTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 420 ~~~eG~~~v~~~~ia~~ll~~ 440 (600)
.+++|++++++..|++.+|+.
T Consensus 799 ~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 799 RIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred ccccChHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 33
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-45 Score=408.98 Aligned_cols=341 Identities=18% Similarity=0.185 Sum_probs=276.7
Q ss_pred HHHHHHHHHccC-----CHHHHHHHHhhcC---------C-chhhHhh--Hh-chHHHHccCCCHHHHHhHHHHHhccce
Q 007513 70 AYAWKRIIELRL-----SEEEASMLRSSVD---------E-PAFTDLH--WG-MFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (600)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~~g~~~~~~~---------~-~~~~~~~--~~-l~~~~i~~~Gt~eq~~~~l~~l~~g~~ 131 (600)
.++|+.+.+.|| |+++||.+.+... . ..++..+ .. ....+|..+||++||++|||++.+|++
T Consensus 102 ~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~ 181 (622)
T PTZ00456 102 KEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMATANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEW 181 (622)
T ss_pred HHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCh
Confidence 358999999998 5778876543311 0 1122111 11 234578899999999999999999999
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCC-eEEEecCCCCccccccCCCCCCc----cEEEEEEEEccC-CCCCceEEEE
Q 007513 132 IGCYAQTELGHGSNVQGLETTATFDPQTD-EFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITD-GQDHGVNGFI 205 (600)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~-~~vlntp~~~G~K~~i~~~a~~A----d~~lV~A~~~~~-~~~~g~~~fl 205 (600)
++|+++|||++|||+..++|+|+++ +| +|+|| |+|+||++ +.++ ++.+|+||+..+ ++..|+++|+
T Consensus 182 ~~t~alTEp~aGSD~~~l~T~A~~~--gdG~y~L~-----G~K~fIt~-g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFl 253 (622)
T PTZ00456 182 SGTMCLTEPQCGTDLGQVKTKAEPS--ADGSYKIT-----GTKIFISA-GDHDLTENIVHIVLARLPNSLPTTKGLSLFL 253 (622)
T ss_pred hhhhhccCCccCCCcccCeeEEEEC--CCCcEEEe-----eEEEEecC-CchhhccCcEEEEEEEecCCCCCCCceEEEE
Confidence 9999999999999999999999987 44 69999 99999998 7663 577999998653 3457899999
Q ss_pred EEeccCCC-C--CCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHH
Q 007513 206 VQLRSLED-H--SPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVY 282 (600)
Q Consensus 206 V~~rd~~~-~--~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~ 282 (600)
||...++. + ...+||++..+.+|+| +++++++.|.||| |.+++|| .++.++. .+...|+.
T Consensus 254 Vp~~~~~~~G~~~~~~gv~~~~~~~kmG---~~gs~t~~l~fd~---~~~~llG-----~~~~Gl~------~~~~~mn~ 316 (622)
T PTZ00456 254 VPRHVVKPDGSLETAKNVKCIGLEKKMG---IKGSSTCQLSFEN---SVGYLIG-----EPNAGMK------QMFTFMNT 316 (622)
T ss_pred EeCCCCCcCCCccCCCCeeecCcccccC---CCCCceEEEEeeC---hhHhhcC-----CCChHHH------HHHHHHHH
Confidence 99643211 1 1347899999999999 9999999999999 4678997 5666654 67788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC-----CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007513 283 VRQTIVADASCALSRAVCIATRYSAVRRQFGSKNG-----GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDV 357 (600)
Q Consensus 283 ~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~-----~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~ 357 (600)
+|+.+++.++|+++++++.+++|+++|+||+.+.+ ....||+++|.+|++|++|.+.++++|.+++++++.++..
T Consensus 317 aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~ 396 (622)
T PTZ00456 317 ARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIH 396 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999854321 2345999999999999999999999999999999887742
Q ss_pred HHHhccCCCCC----hhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHH-HH
Q 007513 358 TQRLQANDFST----LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLL-LQ 432 (600)
Q Consensus 358 ~~~~~~~~~~~----~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~-~~ 432 (600)
... .+... .......++++|+++++.+.++++.|+|+|||+||+++++++++|||++...+++|+|++++ ..
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler~~RDari~~i~eGt~~iq~~dl 473 (622)
T PTZ00456 397 AAA---KDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQILRDARIGTLYEGTTGIQALDF 473 (622)
T ss_pred ccc---cchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHHHHHHhhcccccCChHHHHHHHH
Confidence 100 01000 01234678899999999999999999999999999999999999999999999999999997 58
Q ss_pred HHHHHH
Q 007513 433 VARFLM 438 (600)
Q Consensus 433 ia~~ll 438 (600)
|+|.++
T Consensus 474 i~rkll 479 (622)
T PTZ00456 474 IGRKVL 479 (622)
T ss_pred HHHHhh
Confidence 899887
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=5.6e-45 Score=379.71 Aligned_cols=326 Identities=27% Similarity=0.361 Sum_probs=280.7
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHhhcCCchhhHhhHhchHH
Q 007513 29 RHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRLSEEEASMLRSSVDEPAFTDLHWGMFVP 108 (600)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 108 (600)
++|.++++.+++++.++...... .........|+.+.++||. +++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~----------------------~~~~ 46 (327)
T cd00567 1 EEQRELRDSAREFAAEELEPYAR------------ERRETPEEPWELLAELGLL----------------------LGAA 46 (327)
T ss_pred ChHHHHHHHHHHHHHHhccccHH------------hHHhhCCCCHHHHHHHHHH----------------------hchH
Confidence 36788999999999875322110 0011224457777777765 5666
Q ss_pred HHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEE
Q 007513 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV 188 (600)
Q Consensus 109 ~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV 188 (600)
+|..+|+++|+++||+.+.+|+.++|+++|||++|||+..+.|+++++ +++|+|| |+|+|+++ +..||+++|
T Consensus 47 ~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~ad~~lv 118 (327)
T cd00567 47 LLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKD--GDGYVLN-----GRKIFISN-GGDADLFIV 118 (327)
T ss_pred HHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEe--CCEEEEE-----EEEEEecC-CccCCEEEE
Confidence 788899999999999999999999999999999999999999999988 6899999 99999999 889999999
Q ss_pred EEEEccCC-CCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCcee
Q 007513 189 YARLITDG-QDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYV 267 (600)
Q Consensus 189 ~A~~~~~~-~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~ 267 (600)
+|++..++ +..++.+|+|| .+.|||++.+.|.++| +++++++.+.|+||+||.+++++ ..+.+.
T Consensus 119 ~a~~~~~~~~~~~~~~~lvp-------~~~~Gv~~~~~~~~~G---~~~~~~~~v~~~~v~Vp~~~~l~-----~~~~g~ 183 (327)
T cd00567 119 LARTDEEGPGHRGISAFLVP-------ADTPGVTVGRIWDKMG---MRGSGTGELVFDDVRVPEDNLLG-----EEGGGF 183 (327)
T ss_pred EEEeCCCCCCCCceEEEEEe-------CCCCCeEecccccccc---CCCCceEEEEECCEEecHHHcCC-----CCCchH
Confidence 99976433 34578899999 6779999999999999 99999999999999999999997 434333
Q ss_pred ccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Q 007513 268 QSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVG 347 (600)
Q Consensus 268 ~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~ 347 (600)
. .....+...|+.+++.++|+++++++.+++|+++|+|||+ ||.+||.+|++|+++.+.+++++.+.
T Consensus 184 ~------~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~-------~~~~~~~vq~~la~~~~~~~~~~~~~ 250 (327)
T cd00567 184 E------LAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGK-------PLAEFQAVQFKLADMAAELEAARLLL 250 (327)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-------ccccchHHHHHHHHHHHHHHHHHHHH
Confidence 2 4556677899999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhH
Q 007513 348 EWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNI 427 (600)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~ 427 (600)
+.+++.+++ .. ......++++|+++++.+.++++.|+++|||+||+++++++++|||++...+++|+++
T Consensus 251 ~~a~~~~~~-------~~----~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~ 319 (327)
T cd00567 251 YRAAWLLDQ-------GP----DEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAE 319 (327)
T ss_pred HHHHHHHhC-------CC----CcchHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHH
Confidence 999877652 11 1245667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007513 428 VLLLQVAR 435 (600)
Q Consensus 428 v~~~~ia~ 435 (600)
+++.++++
T Consensus 320 ~~~~~~~~ 327 (327)
T cd00567 320 IQRLIIAR 327 (327)
T ss_pred HHHHHhcC
Confidence 99988764
No 35
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.4e-45 Score=390.06 Aligned_cols=350 Identities=19% Similarity=0.182 Sum_probs=280.0
Q ss_pred hhhHHHHHHHHHHHhcCCCCCCCccc--CCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhc--------
Q 007513 29 RHAFQVSDRIARLVASDPAFRKDNRA--MLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSV-------- 93 (600)
Q Consensus 29 ~e~~~l~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~-------- 93 (600)
+||.++++.+++|+.++......... ..+.... ....+|+.+.+.|| |+++||.+.+..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~ 74 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGRE------DRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREE 74 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccch------HHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHH
Confidence 46789999999999886432211100 0011111 23456778888887 678887654432
Q ss_pred ----CCchhhH-hhHhchHHHHccCCCHHHHHhHHHHHhccceeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCC
Q 007513 94 ----DEPAFTD-LHWGMFVPAIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPT 168 (600)
Q Consensus 94 ----~~~~~~~-~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~ 168 (600)
+.+.++. .+..+++..|..+|+++|+++||+++.+|+.++++++|||++|||+..+.|+|+.+ +++|+||
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~--~~g~~L~--- 149 (380)
T cd01152 75 MAAAGAPVPFNQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRD--GDDWVVN--- 149 (380)
T ss_pred HHhcCCCcccchhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEc--CCeEEEe---
Confidence 2233332 22234556788999999999999999999999999999999999999999999987 7899999
Q ss_pred CCccccccCCCCCCccEEEEEEEEccCCC-CCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecce
Q 007513 169 LTSSKWWPGGLGKVSTHAVVYARLITDGQ-DHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHV 247 (600)
Q Consensus 169 ~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~-~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v 247 (600)
|+|+||++ +..||+++|+|++..+++ ..++.+|+|| .+.|||++.+.+.++| +++++.+.|+||
T Consensus 150 --G~K~~it~-~~~ad~~lv~a~~~~~~~~~~~~~~~lVp-------~~~~Gv~~~~~~~~~g-----~~~~~~l~f~~v 214 (380)
T cd01152 150 --GQKIWTSG-AHYADWAWLLVRTDPEAPKHRGISILLVD-------MDSPGVTVRPIRSING-----GEFFNEVFLDDV 214 (380)
T ss_pred --cEEEEEcC-ccccCEEEEEEEeCCCccCcCCeEEEEEe-------CCCCceEeeehhhccC-----CCCcceEEecCc
Confidence 99999999 899999999999754332 3478999999 6789999999988776 457899999999
Q ss_pred ecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 007513 248 RIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 248 ~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q 327 (600)
+||.+++|+ ..|.++. .+...+...|+.+++. +..+++.+++|+++|.+||+ ||.+||
T Consensus 215 ~Vp~~~~lg-----~~~~g~~------~~~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~-------~l~~~~ 272 (380)
T cd01152 215 RVPDANRVG-----EVNDGWK------VAMTTLNFERVSIGGS----AATFFELLLARLLLLTRDGR-------PLIDDP 272 (380)
T ss_pred CcchhcccC-----CCCchHH------HHHHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCC-------CcccCH
Confidence 999999998 5555443 4555566677665544 44555677889999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccccccc-
Q 007513 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCS- 406 (600)
Q Consensus 328 ~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~- 406 (600)
.+|++|++|.+.+++++.+++.+++.+++ +. .....++++|+++++.+.++++.++|++||.||+.+
T Consensus 273 ~vq~~la~~~~~l~~a~~l~~~aa~~~~~-------~~-----~~~~~~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~ 340 (380)
T cd01152 273 LVRQRLARLEAEAEALRLLVFRLASALAA-------GK-----PPGAEASIAKLFGSELAQELAELALELLGTAALLRDP 340 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CC-----CCChHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence 99999999999999999999999887752 11 123447899999999999999999999999999988
Q ss_pred -------CChhHHhhhhcccccccchhHHHHHHHHHHHH
Q 007513 407 -------SGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 407 -------~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll 438 (600)
+++++++||++...+++|++++++..+++.++
T Consensus 341 ~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~ 379 (380)
T cd01152 341 APGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLL 379 (380)
T ss_pred ccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999876
No 36
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.2e-44 Score=388.16 Aligned_cols=302 Identities=22% Similarity=0.246 Sum_probs=258.8
Q ss_pred hhhHhhHhchHHHHccCCCHHHHHhHHHHHhccc----eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCcc
Q 007513 97 AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME----IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSS 172 (600)
Q Consensus 97 ~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~----~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~ 172 (600)
.|+.+|. .++.+|..+|+++| ++|||++.+|+ +++|+++|||++|||+.+++|+|++++ +|+|+|| |+
T Consensus 111 ~p~~~~~-~~~~~l~~~g~~~~-~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~-g~~~~Ln-----G~ 182 (418)
T cd01154 111 CPLTMTD-AAVYALRKYGPEEL-KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSG-GGVYRLN-----GH 182 (418)
T ss_pred CcHHHHH-HHHHHHHHhCcHHH-HHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECC-CCcEEEE-----EE
Confidence 4444454 57788999999886 47999999997 899999999999999999999999874 6789999 99
Q ss_pred ccccCCCCCCccEEEEEEEEccC-CCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCc
Q 007513 173 KWWPGGLGKVSTHAVVYARLITD-GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (600)
Q Consensus 173 K~~i~~~a~~Ad~~lV~A~~~~~-~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~ 251 (600)
|+|+|+ + .||+++|+|+++.+ ++..|+++|+||.+.++ ...|||+|.+.++++| +++++++.|.|+|| .
T Consensus 183 K~f~s~-a-~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~--~~~~Gv~i~~~~~~~G---~r~~~~~ev~f~dv---~ 252 (418)
T cd01154 183 KWFASA-P-LADAALVLARPEGAPAGARGLSLFLVPRLLED--GTRNGYRIRRLKDKLG---TRSVATGEVEFDDA---E 252 (418)
T ss_pred EEEecC-c-ccCEEEEEEECCCCCCCCCcEEEEEEeccCCC--CCCCCeEecccccccC---CCCCCeEEEEecCc---C
Confidence 999999 7 99999999998653 33478999999954322 1236999999999999 99999999999998 3
Q ss_pred CcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHH
Q 007513 252 NQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQN 331 (600)
Q Consensus 252 ~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~ 331 (600)
+++|| ..|.++. .+...+...|+.+++.++|.++++++.+++|+++|+|||+ ||+++|.+|+
T Consensus 253 ~~~lG-----~~g~G~~------~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~-------~l~~~~~v~~ 314 (418)
T cd01154 253 AYLIG-----DEGKGIY------YILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGK-------PLIDHPLMRR 314 (418)
T ss_pred ccccC-----CCCccHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC-------chhhhHHHHH
Confidence 78887 5666655 5667889999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhH
Q 007513 332 RLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPE 411 (600)
Q Consensus 332 ~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~ 411 (600)
+|+++.+.+++++++++++++.++... .+...........++++|+++++.+.+++++|+|+|||.||+.++++++
T Consensus 315 ~La~~~~~~eaar~l~~~aa~~~~~~~----~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r 390 (418)
T cd01154 315 DLAEMEVDVEAATALTFRAARAFDRAA----ADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVAR 390 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc----cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHH
Confidence 999999999999999999988775310 0000000112345788999999999999999999999999999999999
Q ss_pred HhhhhcccccccchhHHHHHHHHHHHH
Q 007513 412 LFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 412 ~~rd~~~~~~~eG~~~v~~~~ia~~ll 438 (600)
+|||++...+++|++++++..++|.+-
T Consensus 391 ~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 391 LHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 999999999999999999999998774
No 37
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-44 Score=390.05 Aligned_cols=290 Identities=20% Similarity=0.191 Sum_probs=252.7
Q ss_pred chHHHHccCCCHHHHHhHHHHHhccc-------------eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCc
Q 007513 105 MFVPAIKGQGTDEQHQKWLPLAYKME-------------IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTS 171 (600)
Q Consensus 105 l~~~~i~~~Gt~eq~~~~l~~l~~g~-------------~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G 171 (600)
.++..+..+|+++|+++|||++.+|+ .++++++|||++|||+..++|+|+++. +|+|+|| |
T Consensus 139 ~~a~~~l~~~~~e~~~~~lp~l~sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~-gg~w~Ln-----G 212 (538)
T PRK11561 139 FAATPLLLQMLPAPFQDWLTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLA-DGSYRLV-----G 212 (538)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhCCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECC-CCeEEEE-----E
Confidence 45566777799999999999999997 466999999999999999999999852 6789999 9
Q ss_pred cccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCc
Q 007513 172 SKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPR 251 (600)
Q Consensus 172 ~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~ 251 (600)
+|+||++ ..||+++|+||+. .|+++|+||...++ ...+||++...++|+| +++.++++|.|+|| .
T Consensus 213 ~K~fiSa--~~AD~~lVlArt~-----~Gls~FlVp~~~p~--g~~nGv~i~rl~~klG---~r~~~t~ev~f~dv---~ 277 (538)
T PRK11561 213 HKWFFSV--PQSDAHLVLAQAK-----GGLSCFFVPRFLPD--GQRNAIRLERLKDKLG---NRSNASSEVEFQDA---I 277 (538)
T ss_pred EEEEEEc--hhhCEEEEEEEEC-----CceEEEEEECCCCC--CCCCceEEeccccccc---CCCCceeEEEECCH---H
Confidence 9999994 6899999999974 47999999932111 0123899999999999 99999999999999 4
Q ss_pred CcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHH
Q 007513 252 NQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQN 331 (600)
Q Consensus 252 ~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~ 331 (600)
+++|| +.|.++. .+...++.+|+.+++.++|.++++++.+++|+++|+|||+ ||+++|.+|+
T Consensus 278 ~~llG-----~~g~G~~------~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~-------~L~~~q~vq~ 339 (538)
T PRK11561 278 GWLLG-----EEGEGIR------LILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGK-------PLIEQPLMRQ 339 (538)
T ss_pred HHHCC-----CCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCC-------ccccCHHHHH
Confidence 78998 6777765 6777889999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhH
Q 007513 332 RLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPE 411 (600)
Q Consensus 332 ~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~ 411 (600)
+|++|.+.+++++++++++++.++.. .+..........++++|.++++.+.+++++|+|+|||+||++++++++
T Consensus 340 ~LAdm~~~ieaar~l~~~aa~~~d~~------~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ee~~ler 413 (538)
T PRK11561 340 VLSRMALQLEGQTALLFRLARAWDRR------ADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYCEESELPR 413 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCcHHHH
Confidence 99999999999999999999988731 010011123456788999999999999999999999999999999999
Q ss_pred HhhhhcccccccchhHHHHHHHHHHHHH
Q 007513 412 LFAVYVPACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 412 ~~rd~~~~~~~eG~~~v~~~~ia~~ll~ 439 (600)
+|||++...++||++++++..++|.+.+
T Consensus 414 l~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 414 LYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999998875
No 38
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=9.4e-44 Score=380.89 Aligned_cols=337 Identities=19% Similarity=0.202 Sum_probs=266.8
Q ss_pred HHHHHHHHHccC-----CHHHHHHHHhhcC------------CchhhHhhHhchHHHHccCCCHHHHHhHHHHHhcccee
Q 007513 70 AYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (600)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~~g~~~~~~~------------~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~ 132 (600)
.++|+.+.+.|| |+++||.+.++.. .+.++..........|..+|+++|+++|+|++.+|+.+
T Consensus 39 ~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~ 118 (407)
T cd01153 39 KEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWT 118 (407)
T ss_pred HHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCee
Confidence 467889999887 5777776543321 12222111123445678889999999999999999999
Q ss_pred eEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc----cEEEEEEEEccCC-CCCceEEEEEE
Q 007513 133 GCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS----THAVVYARLITDG-QDHGVNGFIVQ 207 (600)
Q Consensus 133 ~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~A----d~~lV~A~~~~~~-~~~g~~~flV~ 207 (600)
+|+++|||++|||+..+.|+|++++ +|+|+|| |+|+|++| +.+| ++++|+|++..++ +..++++|+||
T Consensus 119 ~~~a~tEp~~gsd~~~~~t~a~~~~-~ggy~l~-----G~K~~is~-~~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp 191 (407)
T cd01153 119 GTMCLTEPDAGSDLGALRTKAVYQA-DGSWRIN-----GVKRFISA-GEHDMSENIVHLVLARSEGAPPGVKGLSLFLVP 191 (407)
T ss_pred EEEEecCCCCCCCcccceEEEEECC-CCcEEEe-----eEEEEEeC-CCcccccccEEEEEEeCCCCCCCCCceEEEEEe
Confidence 9999999999999999999999874 3589999 99999999 7776 5788999875322 23578999999
Q ss_pred eccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHH
Q 007513 208 LRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTI 287 (600)
Q Consensus 208 ~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~ 287 (600)
.+.++ ...|||++.+.|+++| +++++++.|.|+||+|| +|+ .+|.++. .....+...|+.+
T Consensus 192 ~~~~~--~~~~gv~i~~~~~~~G---~r~t~s~~v~f~~v~Vp---~lg-----~~~~g~~------~~~~~l~~~r~~~ 252 (407)
T cd01153 192 KFLDD--GERNGVTVARIEEKMG---LHGSPTCELVFDNAKGE---LIG-----EEGMGLA------QMFAMMNGARLGV 252 (407)
T ss_pred ccCcC--CCCCCeEeccchhccC---CCCCCeEEEEEcCEEEe---eeC-----CCCccHH------HHHHHHHHHHHHH
Confidence 43211 1138999999999999 99999999999999999 776 5555443 5667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007513 288 VADASCALSRAVCIATRYSAVRRQFGSKNG-GPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDF 366 (600)
Q Consensus 288 ~a~~~g~~~~al~~a~~ya~~R~qfg~~~~-~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~ 366 (600)
++.++|+++++++.+++|+++|+|||++.. .+..++.++|.+|++|+++.+.+++++.+++++++.+++........+.
T Consensus 253 aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa~~~d~~~~~~~~~~~ 332 (407)
T cd01153 253 GTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTATVQDLAERKATEGED 332 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 999999999999999999999999999321 1222489999999999999999999999999998887642100000000
Q ss_pred CC--hhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHH
Q 007513 367 ST--LPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQ 432 (600)
Q Consensus 367 ~~--~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ 432 (600)
.. .......++++|+++++.+.++++.++++|||.||+++++++++|||++...+++|++++++..
T Consensus 333 ~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~~~~~~ 400 (407)
T cd01153 333 RKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALD 400 (407)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHHHHHHH
Confidence 00 0012455788999999999999999999999999999999999999999999999999988873
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-39 Score=348.08 Aligned_cols=420 Identities=14% Similarity=0.052 Sum_probs=305.4
Q ss_pred HHHHHHHHc-cC-----CHHHHHHHHhhcC------------Cchhh--HhhHhchHHHHccCCCHHHHHhHHHHHhccc
Q 007513 71 YAWKRIIEL-RL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (600)
Q Consensus 71 ~~~~~~~~~-g~-----~~~~~g~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (600)
.+.+.+.++ || |+++||.+.+..+ .+.++ ..|..+....|..+|+++||++|||++++|+
T Consensus 54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe 133 (520)
T PTZ00457 54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133 (520)
T ss_pred HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 344456677 65 7889887654421 12222 2454566678888999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEcc----C-C--CCCceEE
Q 007513 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLIT----D-G--QDHGVNG 203 (600)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~----~-~--~~~g~~~ 203 (600)
.++++|+|| +.|||+..+.|+|+++. +|+|+|| |+|.|+ + |..||+++|+|++.. + + ...|+++
T Consensus 134 ~i~A~AltE-~aGSD~a~i~TtA~~~~-gg~wvLN-----G~K~~t-~-g~~Ad~~lV~Art~~~~~~~~g~~~~~git~ 204 (520)
T PTZ00457 134 IMMGWATEE-GCGSDISMNTTKASLTD-DGSYVLT-----GQKRCE-F-AASATHFLVLAKTLTQTAAEEGATEVSRNSF 204 (520)
T ss_pred cEEEEEeCC-CCCCccccceeEEEEcC-CCeEEEE-----EEEEEE-c-CchhcEEEEEeecCCcccccccccCcCceEE
Confidence 999999998 99999999999999863 4579999 999977 6 789999999999753 1 1 1357999
Q ss_pred EEEEeccCCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHH
Q 007513 204 FIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYV 283 (600)
Q Consensus 204 flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~ 283 (600)
|+|| .+.|||++.+ +.|.|||| |.+++|| ..|.++. .+...++.+
T Consensus 205 FlV~-------~dapGVtv~~---------------~eV~FddV--P~~~vLG-----~~g~G~~------~a~~~L~~~ 249 (520)
T PTZ00457 205 FICA-------KDAKGVSVNG---------------DSVVFENT--PAADVVG-----VVGEGFK------DAMITLFTE 249 (520)
T ss_pred EEEE-------CCCCceEEec---------------CEEEECCC--CHHHhCC-----CCCchHH------HHHHHHHHH
Confidence 9999 7889999852 47999997 9999998 6666655 667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007513 284 RQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQA 363 (600)
Q Consensus 284 r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~ 363 (600)
|+.+++.++|+++++++.+++|++ +|.+||+|++|.+.+++++++++.+++++|+
T Consensus 250 Rl~~aA~~vGia~~ale~av~ya~------------------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~------- 304 (520)
T PTZ00457 250 QYLYAASLLGIMKRVVQELRGSNA------------------EEGATDTVASFACAMYAMESTLYALTANLDL------- 304 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 999999999999999999999984 3789999999999999999999999998863
Q ss_pred CCCCChhhhHHHHhhHHHHHH---HHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHHHH
Q 007513 364 NDFSTLPEAHACTAGLKSLTT---TATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 364 ~~~~~~~~~~~~~a~aK~~~t---~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll~~ 440 (600)
...+.+..++++|+|++ +.+..++++++| .++|+++++||++.+.++||+|++++ +.-+.
T Consensus 305 ----g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~ri~~i~egs~~~l~----~~~~~- 367 (520)
T PTZ00457 305 ----PTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANARLFLSMMESRDFLY----SSAVC- 367 (520)
T ss_pred ----CCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHHHHHHhhhHHHHHH----HHHHh-
Confidence 11356788999999999 888888888777 89999999999999999999999999 11111
Q ss_pred HHHhcCCCCCcccccc---ccchhHhhhhcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChhhhHH
Q 007513 441 VSQLGYGNMPVGTTTY---MGRAEQLMQCHCGVQKAEDWLNPSAILEAFEARAIRMSVACAQNLSKF-----TNQEEGFA 512 (600)
Q Consensus 441 ~~~~~~~~~~~~~~~y---l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~l~~~-----~~~~~~~n 512 (600)
.+ ..++...... |..++.-.....-.. ..+|..+.. ..++++.+..++... .+.+...-
T Consensus 368 ag----~~~~g~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~l~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~i~ 434 (520)
T PTZ00457 368 CG----VEDYGLFFQRASTLQMMQARTLRSLGVR----DRVPIKNLP-----DCSLIDEAVVAFGNAVEATFVRSGSQVP 434 (520)
T ss_pred hc----ccchHHHHHHhhhhhhHHHHHHHhcCCC----CCCCcchhH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 1111101000 000000000000000 003321111 122222222222211 12456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCCChHHHHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHH
Q 007513 513 ELAADLVEAAVAHCQLIVVSKFIEKLQQD----IPGKGVKPILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQL 588 (600)
Q Consensus 513 ~~~~~l~~la~a~~~~~~l~~f~~~v~~~----~~~~~~~~vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~ 588 (600)
+.+..|.+++++-+++|.+.+-+++.++. .++.+....|.+.++.-+-.++..++..+..+++.+.+..+.|-..+
T Consensus 435 ~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~~~~~~~~~~~~a~~~ 514 (520)
T PTZ00457 435 YQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNVGKTADDSYKRIALEM 514 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHH
Confidence 78899999999999999999988888653 23444555688888889999999999888888777755555555444
Q ss_pred H
Q 007513 589 R 589 (600)
Q Consensus 589 ~ 589 (600)
.
T Consensus 515 ~ 515 (520)
T PTZ00457 515 C 515 (520)
T ss_pred H
Confidence 3
No 40
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=3.3e-41 Score=358.15 Aligned_cols=328 Identities=17% Similarity=0.085 Sum_probs=259.6
Q ss_pred HHHHHHHHHccC-----CHHHHHHHHhhcC------------Cchhh--HhhHhchHHHHccCCCHHHHHhHHHHHhccc
Q 007513 70 AYAWKRIIELRL-----SEEEASMLRSSVD------------EPAFT--DLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (600)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~~g~~~~~~~------------~~~~~--~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (600)
.+.|+.+.+.|| |+++||.+.++.+ .+.++ .+|. .....+..+|+++|+++|++++.+|+
T Consensus 25 ~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~ 103 (377)
T cd01163 25 YEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF-GFVEALLLAGPEQFRKRWFGRVLNGW 103 (377)
T ss_pred HHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 467888888887 6788886654321 23332 3443 33467888999999999999999999
Q ss_pred eeeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEecc
Q 007513 131 IIGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRS 210 (600)
Q Consensus 131 ~~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd 210 (600)
+++ .++|||++|+ +..+.|+++.+ +|+|+|| |+|.||++ +..||+++|+|++.. .++.+|+||
T Consensus 104 ~~~-~a~tE~~~~~-~~~~~~~~~~~--~~g~~ln-----G~K~~is~-a~~Ad~~~v~a~~~~----~~~~~~lV~--- 166 (377)
T cd01163 104 IFG-NAVSERGSVR-PGTFLTATVRD--GGGYVLN-----GKKFYSTG-ALFSDWVTVSALDEE----GKLVFAAVP--- 166 (377)
T ss_pred eEE-EeecCCCCCC-CCCceEEEEec--CCEEEEe-----ceEEeecC-CccceEEEEEEEcCC----CcEEEEEEe---
Confidence 765 5999999886 66777777766 7899999 99999999 899999999998531 357789999
Q ss_pred CCCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccccccccCCCceeccCcchhhHHhHHHHHHHHHHHH
Q 007513 211 LEDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 290 (600)
Q Consensus 211 ~~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~ 290 (600)
.+.|||++.+.|+++| +++++++.|.|+||+||.+++|+ ..+.+.. ....+...|+.+++.
T Consensus 167 ----~~~~Gv~i~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~lg-----~~~~g~~-------~~~~~~~~~l~~aa~ 227 (377)
T cd01163 167 ----TDRPGITVVDDWDGFG---QRLTASGTVTFDNVRVEPDEVLP-----RPNAPDR-------GTLLTAIYQLVLAAV 227 (377)
T ss_pred ----CCCCceeecCCccccc---CccCCcceEEEeeEEECHHHccC-----CCccccc-------cccccHHHHHHHHHH
Confidence 7789999999999999 99999999999999999999998 3333321 011233578889999
Q ss_pred HHHHHHHHHHHHHHHhhhhc-ccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCh
Q 007513 291 ASCALSRAVCIATRYSAVRR-QFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTL 369 (600)
Q Consensus 291 ~~g~~~~al~~a~~ya~~R~-qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~ 369 (600)
++|+++++++.+++|+++|+ +||.+... ++.++|.+|++|++|.+.+++++++++.+++.+++........+....
T Consensus 228 ~lG~a~~al~~~~~~~~~R~~~~g~~~~~---~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~ 304 (377)
T cd01163 228 LAGIARAALDDAVAYVRSRTRPWIHSGAE---SARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEAR 304 (377)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCCcc---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 99999999999999999995 88873221 689999999999999999999999999999988754211000000011
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHHHHHH
Q 007513 370 PEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVARFLM 438 (600)
Q Consensus 370 ~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia~~ll 438 (600)
.+....++++|.++++.+.++++.|+|+|||.||+++++++++|||++...++...+ .....++.+++
T Consensus 305 ~~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~ 372 (377)
T cd01163 305 GEAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYAL 372 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhc
Confidence 234566889999999999999999999999999999999999999999988776664 44445666655
No 41
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.2e-36 Score=322.26 Aligned_cols=326 Identities=13% Similarity=0.023 Sum_probs=249.2
Q ss_pred HHHHHHHHHccC-----CHHHHHHHHhhc------------CCchhhHh-hHhchHHHHccCCCHHHHHhHHHHHhccce
Q 007513 70 AYAWKRIIELRL-----SEEEASMLRSSV------------DEPAFTDL-HWGMFVPAIKGQGTDEQHQKWLPLAYKMEI 131 (600)
Q Consensus 70 ~~~~~~~~~~g~-----~~~~~g~~~~~~------------~~~~~~~~-~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~ 131 (600)
.++|+.+.+.|| |+++||.+.+.. +.+.++.. ...+....+..+++++|++.|++.. .+..
T Consensus 25 ~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 103 (370)
T cd01159 25 DEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPPEAQEEVWGDGP-DTLL 103 (370)
T ss_pred HHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHhCCHHHHHHHhCCCC-CceE
Confidence 457788888886 677887665432 12322211 1234556677889999998887642 1111
Q ss_pred eeEEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEEccCCCCCceEEEEEEeccC
Q 007513 132 IGCYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGQDHGVNGFIVQLRSL 211 (600)
Q Consensus 132 ~~~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~~~~~~~~g~~~flV~~rd~ 211 (600)
.++ .++.|+|+++ +|+|+|| |+|.|||+ +..||+++|.|++..+.+..++.+|+||
T Consensus 104 ~g~------------~~~~t~A~~~--~~gy~ln-----G~K~~it~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~---- 159 (370)
T cd01159 104 AGS------------YAPGGRAERV--DGGYRVS-----GTWPFASG-CDHADWILVGAIVEDDDGGPLPRAFVVP---- 159 (370)
T ss_pred Eee------------ecCCceeEEe--CCeEEEe-----ccccCccC-CCcCceeEeeeECCCCCCCCcceEEEEE----
Confidence 111 2356789887 7899999 99999999 8999999999997543234578999999
Q ss_pred CCCCCCCCeEEeecCCccCCCCcCcccceeEEecceecCcCcccc-cccccCCCceeccCcchhhHHhHHHHHHHHHHHH
Q 007513 212 EDHSPLPGITIGDIGMKFGNGAYNTMDNGVLRFEHVRIPRNQMLM-VSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVAD 290 (600)
Q Consensus 212 ~~~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fd~v~VP~~~lL~-~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~ 290 (600)
.+ ||++.+.|+++| +++++++.|.|+||+||.+++|+ .......+.+...+ . .....+...|+.+++.
T Consensus 160 ---~~--Gv~~~~~~~~~G---~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~--~-~~~~~~~~~~~~~aa~ 228 (370)
T cd01159 160 ---RA--EYEIVDTWHVVG---LRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTP--V-YRMPLRQVFPLSFAAV 228 (370)
T ss_pred ---hH--HCEEeccccccc---ccccCCCcEEEcceEcCccceecccccccCCCCCCCCc--c-ccCchHHHHHHHHHHH
Confidence 44 999999999999 99999999999999999999997 11000001110000 0 0112345678899999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChh
Q 007513 291 ASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLP 370 (600)
Q Consensus 291 ~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 370 (600)
++|+++++++.+++|+++|.||+... .||+++|.+|+++++|.+.+++++.+++.+++.+++.... ++ ....
T Consensus 229 ~lG~a~~~l~~~~~~~~~R~~~~~~g----~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~---~~-~~~~ 300 (370)
T cd01159 229 SLGAAEGALAEFLELAGKRVRQYGAA----VKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALA---GG-PIDV 300 (370)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCCc----cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-CCCH
Confidence 99999999999999999999984210 1899999999999999999999999999999988754211 11 1112
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchh-HHHHHHHHHHHHH
Q 007513 371 EAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDN-IVLLLQVARFLMK 439 (600)
Q Consensus 371 ~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~-~v~~~~ia~~ll~ 439 (600)
+....++++|+++++.+.++++.++|+|||.||+.+++++++|||++...+++|++ ++++..++|.+|+
T Consensus 301 ~~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 301 EERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 33456788999999999999999999999999999999999999999999999999 9999999998863
No 42
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=284.03 Aligned_cols=287 Identities=21% Similarity=0.299 Sum_probs=254.7
Q ss_pred HHccCCCHHHHHhHHHHHhccceeeEEeccCCC-CCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCC-CCccEE
Q 007513 109 AIKGQGTDEQHQKWLPLAYKMEIIGCYAQTELG-HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLG-KVSTHA 186 (600)
Q Consensus 109 ~i~~~Gt~eq~~~~l~~l~~g~~~~~~a~tE~~-~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a-~~Ad~~ 186 (600)
.|..+|++|||.+||-++.+|++..|||||||. +.||..++++..+++ +|.|||| |+|||++|.+ +.+.++
T Consensus 91 vl~rYGseeQks~WL~PLLeG~irScFaMTEP~VASSDATNIe~SI~r~--~~~YvIN-----g~KWw~sga~~PkCrv~ 163 (392)
T KOG1469|consen 91 VLHRYGSEEQKSQWLIPLLEGNIRSCFAMTEPDVASSDATNIECSIRRD--GDSYVIN-----GKKWWISGAGDPKCRIA 163 (392)
T ss_pred ehhhhCCHHHHhhHhHHHhcCCceeeEeecCCcccccccccceEEEEEc--CCEEEEe-----cceeeecCCCCCceEEE
Confidence 478999999999999999999999999999997 468999999999988 8999999 9999999832 457899
Q ss_pred EEEEEEccC--CCCCceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCccc--ceeEEecceecCcCcccccccccC
Q 007513 187 VVYARLITD--GQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD--NGVLRFEHVRIPRNQMLMVSQVTR 262 (600)
Q Consensus 187 lV~A~~~~~--~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~--~~~v~fd~v~VP~~~lL~~~~v~~ 262 (600)
+++.+++.. .+...-++.+|| .++|||.|......+| +...+ ..+|+|+|||||..|+|- .
T Consensus 164 i~mGkt~~~~~~rhkQqSmiLVp-------M~TpGvkiiRpltVfG---~~DapgGH~Ei~F~~VrVP~~NmlL-----G 228 (392)
T KOG1469|consen 164 IFMGKTDNTSASRHKQQSMILVP-------MNTPGVKIIRPLTVFG---YTDAPGGHFEIHFENVRVPATNMLL-----G 228 (392)
T ss_pred EEecccCCCccchhhcccEEEEe-------cCCCCeeEeeeeeeec---cccCCCCcceEEEEEEEeeccceee-----c
Confidence 999998764 233557799999 6789999999888888 65443 568999999999999986 6
Q ss_pred CCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHH
Q 007513 263 EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYA 342 (600)
Q Consensus 263 ~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a 342 (600)
+|.++. +..+-+..+|+..+.-.+|.+++++++..+-+..|..||+ ++..+.++.+-+|..-.+++.
T Consensus 229 eGrGFE------IaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk-------~l~q~~s~~~diA~sRveiEq 295 (392)
T KOG1469|consen 229 EGRGFE------IAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGK-------KLVQHGSVAHDIAESRVEIEQ 295 (392)
T ss_pred CCCcce------eeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhhcchHHHHHHHHHhHhhh
Confidence 777776 5566677899999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccc
Q 007513 343 FRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTY 422 (600)
Q Consensus 343 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~ 422 (600)
+|.++..++..+|.. ....+....+|.|+.+-..+..+++.++|.|||.|.+.+.++.++|.-++..++.
T Consensus 296 aRLLvLkAAh~mD~~----------G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s~~~~la~l~~~~r~lria 365 (392)
T KOG1469|consen 296 ARLLVLKAAHSMDTL----------GNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVSSDTPLANLYAIARVLRIA 365 (392)
T ss_pred hhhhhhhhhhhhhhh----------cchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCCCCceeeEEEEEeeeEEec
Confidence 999999999988742 1234556688999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHH
Q 007513 423 EGDNIVLLLQVARFLMKT 440 (600)
Q Consensus 423 eG~~~v~~~~ia~~ll~~ 440 (600)
.|..++++..+++.-++.
T Consensus 366 dgPd~vhL~ai~~le~~~ 383 (392)
T KOG1469|consen 366 DGPDEVHLSAIAKLELRD 383 (392)
T ss_pred cCCCccchhhhhhhhHHH
Confidence 999999999999877764
No 43
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=99.89 E-value=3e-22 Score=190.90 Aligned_cols=123 Identities=31% Similarity=0.535 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCChHH
Q 007513 475 DWLNPSAILEAFEARAIRMSVACAQNLSK----FTNQEEGFAELAADLVEAAVAHCQLIVVSKFIEKLQ-QDIPGKGVKP 549 (600)
Q Consensus 475 ~~~~~~~l~~~~~~r~~~~~~~~~~~l~~----~~~~~~~~n~~~~~l~~la~a~~~~~~l~~f~~~v~-~~~~~~~~~~ 549 (600)
||.||++++++|++|+++++..+++++++ +.+.+++||+++++++++|+||+++++++.|+++|+ . +.+++++.
T Consensus 1 d~~~~~~l~~a~~~r~~~ll~~~~~~l~~~~~~g~~~~~awn~~~~~l~~~a~Ah~e~~i~~~f~~~i~~~-~~~~~~~~ 79 (187)
T PF01756_consen 1 DLLDPEFLLQAFEHRAARLLQRAAQKLQKLMKSGKSPFEAWNDCSVQLVRAAKAHAERYILEQFIEAIQSS-CADPEVRQ 79 (187)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHCTSHHHHSSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTSG--SSTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCChHHHH
Confidence 57899999999999999999999999755 577899999999999999999999999999999999 5 89999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcCc
Q 007513 550 ILEILCHIYALHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFTC 598 (600)
Q Consensus 550 vL~~l~~L~aL~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~~ 598 (600)
+|.+||.||+|+.|+++++||+++||||++|++.|++.+.+||.+|||+
T Consensus 80 vL~~L~~Lyal~~i~~~~g~fl~~g~ls~~~~~~l~~~i~~l~~~lrp~ 128 (187)
T PF01756_consen 80 VLRQLCQLYALSIIEENAGDFLEHGYLSPEQIKALRKAIEELCAELRPN 128 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTSS-HHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCcCCHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999997
No 44
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.86 E-value=2.7e-20 Score=200.42 Aligned_cols=248 Identities=9% Similarity=0.074 Sum_probs=186.6
Q ss_pred ccCCCH--HHHHhHHHHHhccceeeEEeccCCCCC-C----CCCCCce--EEEEeCCCCeEEEecCCCCccccccCCCCC
Q 007513 111 KGQGTD--EQHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLET--TATFDPQTDEFVIHSPTLTSSKWWPGGLGK 181 (600)
Q Consensus 111 ~~~Gt~--eq~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~~~~t--tA~~d~~~~~~vlntp~~~G~K~~i~~~a~ 181 (600)
...|++ +-..+|+..+.+..+..+.++|.|-.- | ....... ..+ ++.+|||||| |.|.|+|+ +
T Consensus 119 ~~~~~~y~~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vv-e~~~dGiVV~-----GaK~~~T~-~- 190 (477)
T TIGR02309 119 GKSNSEFAENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVV-EQTDKGVIVR-----GARMTATF-P- 190 (477)
T ss_pred hhcCcHHHHHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEE-EEcCCCEEEe-----CHHHhhhh-c-
Confidence 444543 234679999999999999999988421 1 1111111 222 2337899999 99999999 7
Q ss_pred CccEEEEEEEEccCCCC-Cc--eEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCcc-----------cceeEEecce
Q 007513 182 VSTHAVVYARLITDGQD-HG--VNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTM-----------DNGVLRFEHV 247 (600)
Q Consensus 182 ~Ad~~lV~A~~~~~~~~-~g--~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~-----------~~~~v~fd~v 247 (600)
.||.++|++++...+++ .+ ..+|+|| .++|||++....+++| .++. ..+.|.||||
T Consensus 191 ~ad~~~V~~~~~~~~~~~~~~ya~~F~VP-------~dtpGl~~i~r~~~~~---~~~~~D~plssrfde~da~vvFDdV 260 (477)
T TIGR02309 191 IADEILIFPSTVLKAGAEKDPYALAFAIP-------TNTPGLHFVCREALDG---GDSPFDHPLSSRFEEMDALVIFDDV 260 (477)
T ss_pred ccceEEEeccCCCCCccCCCCeEEEEEee-------CCCCceEEEeCCccCC---CCCcccCccccccCCCeEEEEeCce
Confidence 99999999987653332 34 6899999 8999999998888888 6665 5689999999
Q ss_pred ecCcCcc--cccccccCCCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccc
Q 007513 248 RIPRNQM--LMVSQVTREGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVID 325 (600)
Q Consensus 248 ~VP~~~l--L~~~~v~~~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~ 325 (600)
+||.+++ +| ++.-.+.++. .+ ..++..+..++|.+..+++.++.|+.. .+||. ++.+
T Consensus 261 ~VPwe~VF~~g--~~e~a~~~f~---------~~--~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~-------gi~~ 319 (477)
T TIGR02309 261 LVPWERIFILG--DVELCNNAYA---------AT--GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGI-------GADG 319 (477)
T ss_pred eccHHHhhhcC--CHHHHHHHHH---------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhh-------Cccc
Confidence 9999999 55 1100022221 11 123556788889999999999999999 99999 8999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccc
Q 007513 326 YKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 326 ~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~ 405 (600)
+|.+|++|++|++.+++++++.+.+++..+. +...........++++|.++++...++. +|+|++||.|+..
T Consensus 320 ~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~-------~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 320 FQHVQEKIAEIIVYLEAMKAFWTRAEEEAKE-------NAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------CCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 9999999999999999999999998775431 1111111224568999999999999995 9999999999985
No 45
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.85 E-value=2.7e-20 Score=171.10 Aligned_cols=145 Identities=27% Similarity=0.225 Sum_probs=135.4
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007513 275 LLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLY 354 (600)
Q Consensus 275 ~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~ 354 (600)
++...+..+|+.+++.++|.++.+++.+++|++.|++||+ |+.++|.++++|+++.+.++++++++++++..+
T Consensus 6 ~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~ 78 (150)
T PF00441_consen 6 VALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGK-------PLAEHPAVRRRLADMAARLEAMRALVYRAARRL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTE-------EGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-------cccchhhhHHHHHhhccchhhhhcccccccccc
Confidence 6777899999999999999999999999999999999999 999999999999999999999999999998877
Q ss_pred HHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccchhHHHHHHHH
Q 007513 355 TDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNIVLLLQVA 434 (600)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~~~v~~~~ia 434 (600)
++ +. .....++++|.++++.+.++++.|++++||.||+.+++++++++|++.+.+++|++++++..||
T Consensus 79 ~~-------~~-----~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia 146 (150)
T PF00441_consen 79 DA-------GQ-----NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIA 146 (150)
T ss_dssp HT-------TS-----STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHH
T ss_pred cc-------cc-----ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHH
Confidence 52 11 1256688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 007513 435 RFLM 438 (600)
Q Consensus 435 ~~ll 438 (600)
+.+|
T Consensus 147 ~~~l 150 (150)
T PF00441_consen 147 RRLL 150 (150)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9986
No 46
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=99.53 E-value=6e-14 Score=124.69 Aligned_cols=116 Identities=39% Similarity=0.629 Sum_probs=93.4
Q ss_pred CHHHHHHHHcCChhhHHHHHHHHHHHhcCCCCCC-CcccCCCHHHHHHHHHHHHHHHHHHHHHccCC----HHH----HH
Q 007513 17 DVDEMKIVWAGSRHAFQVSDRIARLVASDPAFRK-DNRAMLSRKELFKNTLRKAAYAWKRIIELRLS----EEE----AS 87 (600)
Q Consensus 17 ~~~~l~~~~~~~~e~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~----~g 87 (600)
|+++|+.+|+|++++.+.|+++.+++.++|.|.. .+...++|++.+.....+..++++.+..++|. +.. +.
T Consensus 1 dv~eLt~~l~Gg~~~~~~rr~i~~~i~~dP~f~~~~~~~~lsr~e~~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (125)
T PF14749_consen 1 DVEELTNFLDGGEEKLERRREIESLIESDPIFSKPPDRYFLSREERYERALRKARRLIKLLKQLGWDDNQDPDDAFMIGL 80 (125)
T ss_dssp -HHHHHHHHHSSHHHHHHHHHHHHHHHT-GGG---TTGGGS-HHHHHHHHHHHHHHHHHHHHHTT-----SHHHHHHH--
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHHHHhhChhhhcCCCcccCCHHHHHHHHHHHHHHHHHHHHHhCcccccCHHHHHHHHH
Confidence 7999999999999999999999999999999998 56688999999999999999999999999984 222 22
Q ss_pred HHHhhcCCchhhHhhHhchHHHHccCCCHHHHHhHHHHHhcccee
Q 007513 88 MLRSSVDEPAFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKMEII 132 (600)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~~~ 132 (600)
....+++.+.|+.+|++||.++|...||+||+++|||++.+.++|
T Consensus 81 ~~~~~~~~~~p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~Ii 125 (125)
T PF14749_consen 81 LMYVLIDEGLPLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEII 125 (125)
T ss_dssp HHHHHHT---THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS-
T ss_pred HHHHhcCCCchhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCccC
Confidence 346677888999999999999999999999999999999998875
No 47
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.41 E-value=2.6e-13 Score=100.37 Aligned_cols=51 Identities=33% Similarity=0.487 Sum_probs=46.1
Q ss_pred EEeccCCCCCCCCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEEEE
Q 007513 134 CYAQTELGHGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARL 192 (600)
Q Consensus 134 ~~a~tE~~~Gsd~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A~~ 192 (600)
|||+|||++|+|+..++|+|+++ +++|+|| |.|+||++ +..||+++|+||+
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~--~~~~~L~-----G~K~~v~~-~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRD--GDGYVLN-----GEKRFVSN-APDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEE--TTEEEEE-----EEEEEEET-TTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecc--cceEEEe-----eEEEEECC-cCccCEEEEEEEE
Confidence 78999999999999999999999 7889999 99999999 8999999999996
No 48
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.33 E-value=1.8e-11 Score=110.20 Aligned_cols=130 Identities=17% Similarity=0.049 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcc--cCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007513 285 QTIVADASCALSRAVCIATRYSAVRRQ--FGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQ 362 (600)
Q Consensus 285 ~~~~a~~~g~~~~al~~a~~ya~~R~q--fg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~ 362 (600)
+.+++.++|+++++++.+++|++.|.. .+. ++.+.+.+|.+++++.+.+++++...+.++..+++....
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~-------~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~-- 71 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGA-------PLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADA-- 71 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-------BCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-------chhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 357899999999999999999999887 233 899999999999999999999999999998887765432
Q ss_pred cCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccccccch
Q 007513 363 ANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGD 425 (600)
Q Consensus 363 ~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~~~eG~ 425 (600)
++.. ..+........|.++++.+.++++.+++++||.|+...+|++|+|||+.....+...
T Consensus 72 -g~~~-~~~~~~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~ 132 (134)
T PF08028_consen 72 -GEEL-TPEERARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPAL 132 (134)
T ss_dssp -T-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG
T ss_pred -cCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCccc
Confidence 2221 345566677889999999999999999999999999999999999999988776544
No 49
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.57 E-value=4.5e-06 Score=87.40 Aligned_cols=252 Identities=17% Similarity=0.164 Sum_probs=146.4
Q ss_pred CCCH--HHHHhHHHHHhccceeeEEeccCCCCC-C----CCC--CCceEEEEeCCCCeEEEecCCCCccccccCCCCCCc
Q 007513 113 QGTD--EQHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQ--GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVS 183 (600)
Q Consensus 113 ~Gt~--eq~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~--~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~A 183 (600)
+|++ +--.+|+..+..-....+-|+|.|-.- | -.. .+-...+- ...||.|++ |.|..+|+ +..+
T Consensus 125 ~~~dy~~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVve-e~~dGIVVr-----GAK~~aT~-~a~t 197 (493)
T COG2368 125 FGTDYHENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVE-ETEDGIVVR-----GAKALATG-SALT 197 (493)
T ss_pred ccchHHHHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEE-EecCceEEE-----ChHHHhcc-cccc
Confidence 4554 334579999999999999999988432 1 111 12222221 225889999 99999999 8899
Q ss_pred cEEEEE-EEEcc-CCCCCceEEEEEEeccCCCCCCCCCeEEeecCC-ccCCCCcCcc------------cceeEEeccee
Q 007513 184 THAVVY-ARLIT-DGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGM-KFGNGAYNTM------------DNGVLRFEHVR 248 (600)
Q Consensus 184 d~~lV~-A~~~~-~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~-~~G~~~~~~~------------~~~~v~fd~v~ 248 (600)
|..+|+ .+.-. +.++. ...|.|| .++|||.+.-... -.+ .++.+. .-+.|.||||.
T Consensus 198 dei~V~Pt~~~~~~d~df-Av~FaiP-------~dt~GvK~i~r~s~~~~-~~~~~g~fd~plssrfde~dailVfDdVf 268 (493)
T COG2368 198 DEIFVLPTRSMQEDDKDF-AVAFAIP-------MDTEGVKFICRRSYELG-RGAEGGPFDYPLSSRFDENDAILVFDDVF 268 (493)
T ss_pred ceEEEeeccccCCCCCce-EEEEEcc-------cCCCceEEEecCcchhh-cccCCCCCCCccccccccCceEEEecccc
Confidence 999988 33222 22223 4579999 8899987654321 111 001111 12459999999
Q ss_pred cCcCcccccccccC-CCceeccCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchH
Q 007513 249 IPRNQMLMVSQVTR-EGKYVQSNVPRQLLYGTMVYVRQTIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYK 327 (600)
Q Consensus 249 VP~~~lL~~~~v~~-~g~~~~~~~~~~~~~~~l~~~r~~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q 327 (600)
||-++++-+.++.. ...+.. .....+.|...+..-.+.+.. -+...+...+.. -+.+|+
T Consensus 269 VPWERVf~y~d~~~~~~~~~~--------~~Fa~~~~~q~~~~k~~k~d~--i~G~~~~~~~~~----------Gv~~~~ 328 (493)
T COG2368 269 VPWERVFIYRDLERAYAWYAV--------SGFARLHRQQAVGRKAVKLDF--ILGAAYLIAETN----------GVEEFR 328 (493)
T ss_pred cchhheeeeccHHHHHHHHHH--------HHHHHHhhhhhhhhhHHHHHH--HHHHHHHHHHhh----------Cccchh
Confidence 99999987443321 001110 000111221111111111111 111122222211 256899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccccccccC
Q 007513 328 TQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLCSS 407 (600)
Q Consensus 328 ~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G~~~~~ 407 (600)
.+|.+|.+|++-.+.+.++...++.--. .............+...|.++...--++.+.+.++.||.-.+..+
T Consensus 329 hIq~kl~Emi~~~e~~~al~~Aa~~~a~-------~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~lPS 401 (493)
T COG2368 329 HIQEKLGEMIALLELMWALSDAAAEEAQ-------KNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIITLPS 401 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCceeecCc
Confidence 9999999999999988877766643211 111111112345567889999999999999999998875444333
No 50
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=98.52 E-value=8.4e-06 Score=88.32 Aligned_cols=240 Identities=11% Similarity=0.089 Sum_probs=137.8
Q ss_pred HHHhHHHHHhccceeeEEeccCCCCC-C----CCCCCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEE-EEE
Q 007513 118 QHQKWLPLAYKMEIIGCYAQTELGHG-S----NVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVV-YAR 191 (600)
Q Consensus 118 q~~~~l~~l~~g~~~~~~a~tE~~~G-s----d~~~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV-~A~ 191 (600)
-..+|+..+.+..+..+.|+|.|-.- | .....-...+. ...+|.||+ |.|...|+ +..+|.++| +..
T Consensus 137 n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVe-e~~dGIVVr-----GAK~~aT~-a~~a~ei~V~~~~ 209 (519)
T TIGR02310 137 NARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEE-ERDDGIVVS-----GAKVVATN-SALTHYNFIGFGS 209 (519)
T ss_pred HHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEE-EcCCcEEEe-----CHHHHhcc-cchhcceeeccCc
Confidence 34689999999999999999988421 1 11111112221 226889999 99999998 889998888 444
Q ss_pred Ec--cCCCCCceEEEEEEeccCCCCCCCCCeEEeecCCcc----C-CCCcC-------cccceeEEecceecCcCccccc
Q 007513 192 LI--TDGQDHGVNGFIVQLRSLEDHSPLPGITIGDIGMKF----G-NGAYN-------TMDNGVLRFEHVRIPRNQMLMV 257 (600)
Q Consensus 192 ~~--~~~~~~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~----G-~~~~~-------~~~~~~v~fd~v~VP~~~lL~~ 257 (600)
.. .+.++. -..|.|| .++|||++.-....- + ..... +-.-+-|.||||+||-++++.+
T Consensus 210 ~~~~~~d~dy-AvaFavP-------~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~ 281 (519)
T TIGR02310 210 AQIIGDNDDF-ALMFIAP-------MDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIY 281 (519)
T ss_pred ccccCCCCCe-EEEEEeE-------cCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceec
Confidence 31 122222 3478999 899999887432211 0 00011 0112569999999999999964
Q ss_pred ccccCCCc-eeccCcchhhHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHH
Q 007513 258 SQVTREGK-YVQSNVPRQLLYGTMVYVRQ-TIVADASCALSRAVCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFP 335 (600)
Q Consensus 258 ~~v~~~g~-~~~~~~~~~~~~~~l~~~r~-~~~a~~~g~~~~al~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~ 335 (600)
+++..-.. +....... .+..-...|. ..+-..+|++.. .+++. -+..|+.+|.+|++
T Consensus 282 gd~e~~~~~~~~~~~~~--~~~~q~~~r~~~k~dfl~G~a~~----~ae~~---------------G~~~~~hVqekl~E 340 (519)
T TIGR02310 282 RDFERCRTWAQYGGFAR--LFPMQACTRLAVKLDFITGLLHK----ALQCT---------------GVLEFRGVQAQMGE 340 (519)
T ss_pred CCHHHHHhHHHhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH----HHHHh---------------CcccchHHHHHHHH
Confidence 33321111 11110000 0000001111 111112222222 12221 24578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 007513 336 LLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 336 ~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG 400 (600)
+++..+.++++...+...-. .........-...+..+|.+.+...-++.+.+.+.+||
T Consensus 341 li~~~E~~~a~~~Aa~~~~~-------~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 341 VVAWRNLFWTLTDAMAGSAY-------QWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred HHHHHHHHHHHHHHHHhcCc-------cCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 99999999877766532111 11111111223445778999999999999988877664
No 51
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.36 E-value=2.2e-07 Score=80.67 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=64.9
Q ss_pred ChhhHHHHHHHHHHHhcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHHHccC-----CHHHHHHHHhhcC--------
Q 007513 28 SRHAFQVSDRIARLVASDPAFRKDNRAMLSRKELFKNTLRKAAYAWKRIIELRL-----SEEEASMLRSSVD-------- 94 (600)
Q Consensus 28 ~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~g~~~~~~~-------- 94 (600)
|+++.++++++++|+.++.. + .....+....+...+|+.+.+.|| |+++||.+.+...
T Consensus 1 t~~~~~l~~~~~~~~~~~~~----~-----~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l 71 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIA----P-----HAAEWDEDGRFPREVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEEL 71 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTH----H-----HHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHch----H-----HHHHHHHhCCCCHHHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhh
Confidence 57899999999999976321 0 011111111344667999999987 5777776543321
Q ss_pred ----Cc--hhhHhhHhchHHHHccCCCHHHHHhHHHHHhccc
Q 007513 95 ----EP--AFTDLHWGMFVPAIKGQGTDEQHQKWLPLAYKME 130 (600)
Q Consensus 95 ----~~--~~~~~~~~l~~~~i~~~Gt~eq~~~~l~~l~~g~ 130 (600)
.+ ..+.+|.++++.+|..+|++||+++|||++.+||
T Consensus 72 ~~~~~~~~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 72 ARADASLAFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHTHHHHHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred hhhcccccchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 12 2345676778889999999999999999999986
No 52
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.35 E-value=0.0014 Score=65.15 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=74.0
Q ss_pred HHHHhHHHHHhccceeeEEeccCCCCC-C-CC-C---CCceEEEEeCCCCeEEEecCCCCccccccCCCCCCccEEEEEE
Q 007513 117 EQHQKWLPLAYKMEIIGCYAQTELGHG-S-NV-Q---GLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYA 190 (600)
Q Consensus 117 eq~~~~l~~l~~g~~~~~~a~tE~~~G-s-d~-~---~~~ttA~~d~~~~~~vlntp~~~G~K~~i~~~a~~Ad~~lV~A 190 (600)
+-..+|+..+.+..+..+.|++.|..- | .. + .+-...+.. ..+|.||+ |.|...|+ +..+|.++|+-
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee-~~dGIvVr-----GAK~~~T~-a~~adei~V~p 195 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEE-TDDGIVVR-----GAKMLATG-APYADEILVFP 195 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE--SSEEEEE-----EEEEEEET-GCCSSEEEE--
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEE-cCCCEEEe-----ChhhhhcC-CcccccEEEee
Confidence 345679999999999999999998521 1 11 1 122222221 25899999 99999998 89999999976
Q ss_pred EEccCCCC-CceEEEEEEeccCCCCCCCCCeEEeecCCccCCCCcCccc----------ceeEEecceecCcCccc
Q 007513 191 RLITDGQD-HGVNGFIVQLRSLEDHSPLPGITIGDIGMKFGNGAYNTMD----------NGVLRFEHVRIPRNQML 255 (600)
Q Consensus 191 ~~~~~~~~-~g~~~flV~~rd~~~~~~~pGv~v~~~~~~~G~~~~~~~~----------~~~v~fd~v~VP~~~lL 255 (600)
-..-.+++ .=-.+|.|| .++|||++.-........ ....| -+.|.||||+||.++++
T Consensus 196 ~~~~~~~d~dyAv~FavP-------~~tpGlk~i~R~s~~~~~-~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 196 TRAMRPGDEDYAVAFAVP-------MNTPGLKIICRESYADGR-RSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp SSSSTTCCGGG-EEEEEE-------TT-TTEEEEE---TTGCC-G-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred ccCCCCCCCceEEEEEcc-------CCCCCEEEEeCCCCCCCc-cccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 43212222 224589999 899999887543322200 00111 25699999999998875
No 53
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=84.55 E-value=10 Score=42.06 Aligned_cols=86 Identities=22% Similarity=0.140 Sum_probs=61.7
Q ss_pred HHHHHHHhhhhcccCCCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhh
Q 007513 299 VCIATRYSAVRRQFGSKNGGPETQVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAG 378 (600)
Q Consensus 299 l~~a~~ya~~R~qfg~~~~~~~~~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 378 (600)
+..+++|...|. |+ .|.+-|.+..||+++.+.+|++-..+.++.....+ + .+........
T Consensus 418 ~~~~v~~~~~~~--~~-------~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~-------~----~~~~~~e~~l 477 (520)
T PTZ00457 418 FGNAVEATFVRS--GS-------QVPYQQLLLNRLGEAASLLYAASAVASRASMCVSK-------G----LPSAKVEGEL 477 (520)
T ss_pred HHHHHHHHHHHH--Hh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------C----CCchHHHHHH
Confidence 445555555553 44 78999999999999999999998877777555432 1 1122223458
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 007513 379 LKSLTTTATADGIEECRKLCGGHGYLC 405 (600)
Q Consensus 379 aK~~~t~~a~~~~~~~~q~~GG~G~~~ 405 (600)
+++||.+...++-..+-+++.. ++..
T Consensus 478 a~~fc~~a~~rv~~~~~~~~~~-~~~~ 503 (520)
T PTZ00457 478 ASAFIAMAVSRARQLSEESCNV-GKTA 503 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 8999999999998888888876 5543
No 54
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=83.35 E-value=23 Score=34.07 Aligned_cols=76 Identities=12% Similarity=-0.023 Sum_probs=54.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcccc
Q 007513 323 VIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGHG 402 (600)
Q Consensus 323 i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~G 402 (600)
+..|+.||.+|++++...+.++++...+...- ...+......-......+|.+..+..-++++.+.+++||.=
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a-------~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEA-------EPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT--------EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcC-------ccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 56799999999999999999988877553211 11111112223445678999999999999999999999865
Q ss_pred ccc
Q 007513 403 YLC 405 (600)
Q Consensus 403 ~~~ 405 (600)
.+.
T Consensus 117 i~~ 119 (205)
T PF03241_consen 117 ITL 119 (205)
T ss_dssp TC-
T ss_pred eeC
Confidence 543
No 55
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=76.38 E-value=33 Score=37.81 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=55.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 007513 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGG 400 (600)
Q Consensus 322 ~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG 400 (600)
-|.+-|.+-+|||+.++.+|++-+...++.+.+.. ..+.+..+.+.++++|++....+...+-++-++
T Consensus 536 ~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~i-----------gl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 536 GIVEEQSVLQRLANVAINIYAMVAVISRASRSYSI-----------GLPNADHELALATAICSEASLRVLRWLWAASSG 603 (634)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68899999999999999999999988888776642 233455667788999999999998888887777
No 56
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=31.22 E-value=1.3e+02 Score=23.41 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.0
Q ss_pred HHHHHhhhhHHHhcCCCCHHHHHHHHHHHHHHHHhhcC
Q 007513 560 LHLVHKHLGDFVSTGCITAKQASLANEQLRSLYSQVFT 597 (600)
Q Consensus 560 L~~i~~~~~~fl~~~~ls~~q~~~i~~~~~~l~~~lr~ 597 (600)
+.-.-+.+|...+.|-++..|.....+.+...+..|+|
T Consensus 42 l~p~m~~iG~~w~~~~~~v~~e~~as~~~~~~l~~l~p 79 (79)
T PF02607_consen 42 LMPAMEEIGELWEEGEISVAQEHLASEAMRAALSILKP 79 (79)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhhCC
Confidence 33444567888899999999998888999988888876
No 57
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=25.59 E-value=6.3e+02 Score=29.74 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=55.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhhhHHHHhhHHHHHHHHHHHHHHHHHHHhccc
Q 007513 322 QVIDYKTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHACTAGLKSLTTTATADGIEECRKLCGGH 401 (600)
Q Consensus 322 ~i~~~q~~q~~la~~~a~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~aK~~~t~~a~~~~~~~~q~~GG~ 401 (600)
.|..-|.+..||+|+++.+|++.+...+.- + .+. +... ..++.+.+.++...+.+.+-+.
T Consensus 562 ~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~-------~~~----~~~~------~~l~~~~~~~~~~~~~~~~~~~ 621 (777)
T PRK09463 562 SLKRRERLSARLGDILSQLYLASAVLKRYE---D-------EGR----PEAD------LPLVHWAVQDALYQAEQALDGL 621 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h-------CCC----chhH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888999999999998877665542 1 011 1111 2344555555555555544322
Q ss_pred cccccCC-hhHHhhhhcc--cccccchhHHHHHHHHHHHHH
Q 007513 402 GYLCSSG-LPELFAVYVP--ACTYEGDNIVLLLQVARFLMK 439 (600)
Q Consensus 402 G~~~~~~-l~~~~rd~~~--~~~~eG~~~v~~~~ia~~ll~ 439 (600)
----.++ +..++|-... ...+.+.++.+..++|+.++.
T Consensus 622 ~~n~p~~~~~~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 622 LRNFPNRVVAGLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHcCCchHHHHHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 1111122 3344443311 335778889999999998874
No 58
>PF10799 YliH: Biofilm formation protein (YliH/bssR); InterPro: IPR020359 This entry represents Biofilm regulator, BssR (from the gene also known as yliH). It represses Escherichia coli biofilm formation in M9C glu and LB glu media but not in M9C and LB media. It may act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signalling pathways. It could also be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway [].
Probab=23.13 E-value=60 Score=27.60 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=23.9
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcC
Q 007513 572 STGCITAKQASLANEQLRSLYSQVFT 597 (600)
Q Consensus 572 ~~~~ls~~q~~~i~~~~~~l~~~lr~ 597 (600)
.-||+|.++.+-+|+.+-+||.++|.
T Consensus 30 AKGYMSVSEsdhLRdn~FeLc~e~r~ 55 (127)
T PF10799_consen 30 AKGYMSVSESDHLRDNLFELCREMRD 55 (127)
T ss_pred HcCccccchhhhHHHHHHHHHHHHHH
Confidence 46999999999999999999999984
No 59
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=22.55 E-value=48 Score=34.94 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhccccccccCChhHHhhhhcccc--cccchhHHHHHHHHHHHHHHHHHhcCCCCCc
Q 007513 383 TTTATADGIEECRKLCGGHGYLCSSGLPELFAVYVPAC--TYEGDNIVLLLQVARFLMKTVSQLGYGNMPV 451 (600)
Q Consensus 383 ~t~~a~~~~~~~~q~~GG~G~~~~~~l~~~~rd~~~~~--~~eG~~~v~~~~ia~~ll~~~~~~~~~~~~~ 451 (600)
++..|.++.-+.+|+||+|||+ +++|+....--+ -|.|+ -.-|.++...+++..++......|+
T Consensus 154 AA~rA~~AGFDgVEIH~AhGYL----i~qFlsp~tN~RtD~YGGS-lENR~Rf~~EVv~aVr~~vg~~~~v 219 (363)
T COG1902 154 AARRAKEAGFDGVEIHGAHGYL----LSQFLSPLTNKRTDEYGGS-LENRARFLLEVVDAVREAVGADFPV 219 (363)
T ss_pred HHHHHHHcCCCEEEEeeccchH----HHHhcCCccCCCCCccCCc-HHHHHHHHHHHHHHHHHHhCCCceE
Confidence 3455556666788999999998 445554333323 46666 6667788888988887764433333
Done!