BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007515
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 133/293 (45%), Gaps = 16/293 (5%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
T LH+ AR GH E+A +L+ V A+ + +TPLH A R G N VKL + +P+
Sbjct: 49 TPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ + L++A G ++ LL + T LHV+A G + + +
Sbjct: 108 LA---TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIK 224
LLE R NG TPLH++ +L+I + N G TPLH AA +
Sbjct: 165 LLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQ 222
Query: 225 GRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
++ + +L SA ++ G T LHL + E V L L+ N+ + G
Sbjct: 223 NQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALL---LSKQANGNLGNKSG 278
Query: 285 NTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
T LHL + L+K GV V+A R GYT L V AS+ G +++V
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV----ASHYGNIKLV 327
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 112/245 (45%), Gaps = 15/245 (6%)
Query: 81 TPLHEACREGRLNFVK--LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
TPLH A G L VK L G P+V N E+ L++A G +VAK LL +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLE--ARQEFAWKKDLNGHTPLHLSCSKGHLEIT 196
+ + T LH +A GH ++VK LLE A A GHTPLH++ +GH+E T
Sbjct: 73 VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVE-T 128
Query: 197 REXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTV 256
+G TPLH AA G++ + + +L + +G T LH+ V
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAV 187
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
+N + VK L+ + P +G T LH+A + LL+ G NA + +
Sbjct: 188 HHNNLDIVKLLLPR---GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ 244
Query: 317 GYTAL 321
G T L
Sbjct: 245 GVTPL 249
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 125/274 (45%), Gaps = 14/274 (5%)
Query: 20 RGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVAAENEKM 79
G + L+L++++ ++ T G T LH+ A++G +A +L+ AA +
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGF--TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL 180
Query: 80 ETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
TPLH A L+ VKL + G P + + + L++A ++ +++VA+ LL Y
Sbjct: 181 -TPLHVAVHHNNLDIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 138 LLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
E T LH++A GH ++V LL ++Q + +G TPLHL +GH+ +
Sbjct: 237 SANAESVQGVTPLHLAAQEGHAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVA- 294
Query: 198 EXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK 257
+ G TPLH A+ G I ++ +L + +T G + LH +
Sbjct: 295 DVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQ 353
Query: 258 NNQYEAVKYLMETLNITKLANMPDNDGNTILHLA 291
+ V L++ N +DG T L +A
Sbjct: 354 QGHTDIVTLLLKN---GASPNEVSSDGTTPLAIA 384
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 182 TPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSA 241
TPLH++ GHL I + + TPLH AA G + +L N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQ-NKAKV 73
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+ +T LH + VK L+E N+ G+T LH+A V+
Sbjct: 74 NAKAKDDQTPLHCAARIGHTNMVKLLLEN---NANPNLATTAGHTPLHIAAREGHVETVL 130
Query: 302 YLLKLGVDVNAINRKGYTALDV 323
LL+ + +KG+T L V
Sbjct: 131 ALLEKEASQACMTKKGFTPLHV 152
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL++VK LLEA + KD NG TPLHL+ GHLE+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
N GRTPLH AA G + ++ +L + +G T LHL +N E VK L
Sbjct: 63 AKDKN-GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 268 ME 269
+E
Sbjct: 121 LE 122
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
GRTPLH AA G + ++ +L + +G T LHL +N E VK L+E
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
N D +G T LHLA +V LL+ G DVNA ++ G T L + A+ +G
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL----AARNGH 113
Query: 334 LQIVPALEEAGA 345
L++V L EAGA
Sbjct: 114 LEVVKLLLEAGA 125
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 179 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 238
NG TPLHL+ GHLE+ + N GRTPLH AA G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTT 298
+ +G T LHL +N E VK L+E N D +G T LHLA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLE 115
Query: 299 MVIYLLKLG 307
+V LL+ G
Sbjct: 116 VVKLLLEAG 124
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 2/122 (1%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
T LHL AR GH E+ +L+ + V A+++ TPLH A R G L VKL + V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELL 166
K +++ + L++A G L+V K LL + + + T LH++A GHL++VK LL
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 167 EA 168
EA
Sbjct: 122 EA 123
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
+G T LHL +N E VK L+E N D +G T LHLA +V LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
G DVNA ++ G T L + A+ +G L++V L EAGA
Sbjct: 58 GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 6/218 (2%)
Query: 75 ENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLN 134
E++ +PLH A G ++ + V + I + D + L A E L+ K L+
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 135 YSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE 194
+L+ + +T LH++A GH ++V+ LL Q +D G TP+ + H++
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 195 ITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHL 254
+ + NE LHWAA G ++I EIL IHG++ LH+
Sbjct: 126 LVK-LLLSKGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKCDLHAVNIHGDSPLHI 183
Query: 255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
+ N+Y+ V + + L N +G T L A+
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKN---KEGETPLQCAS 218
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
+ LH +A AGH+DI L++A + + TPL + HLE +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
EG T LH AA KG ++ +LS + G T + + + VK L
Sbjct: 72 PKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 268 METLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVV 324
L+ N+ DN+ N LH A + LL D++A+N G + L +
Sbjct: 131 ---LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
+T LHL A+ GH E+ +L V +++ TP+ A ++ VKL + G D
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137
Query: 104 SVIYKLNRDNES--VLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLD 160
++ RDNE L+ A G +D+A+ LL L + + G + LH++A D
Sbjct: 138 NI-----RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG-DSPLHIAARENRYD 191
Query: 161 IVKELLEARQEFAWKKDLNGHTPLHLS 187
V L +R K+ G TPL +
Sbjct: 192 CVV-LFLSRDSDVTLKNKEGETPLQCA 217
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/178 (33%), Positives = 74/178 (41%), Gaps = 39/178 (21%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
L L +A AG D V+ +L A D +G+TPLHL+ S GHLEI E
Sbjct: 14 LGKKLLEAARAGQDDEVR-ILMANGADVNATDNDGYTPLHLAASNGHLEIV-EVLLKNGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
G TPLH AA G + I++ +L HG V
Sbjct: 72 DVNASDLTGITPLHLAAATGHLEIVEVLLK-----------HGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N DNDG+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 ------------NAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL-NYSSLLIL 141
L EA R G+ + V++ + + + + + D + L++A G L++ + LL N + +
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
++ G+T LH++A GHL+IV+ LL+ + D +GHTPLHL+ GHLEI
Sbjct: 77 DLTGIT-PLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEI 128
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N DNDG T LHLA + +V LLK G DVNA + G T L + A+ +G L+IV
Sbjct: 41 NATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL----AAATGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 13/144 (9%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A GH E+ +LK ++ A++ + TPL
Sbjct: 26 QDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI-TPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
H A G L V++ + G D + + D + L++A + G L++ + LL + + +
Sbjct: 85 HLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 142 EVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 53 ARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLN 110
AR G ++ ++ ++ A +N+ TPLH A G L V++ + G D + +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGY-TPLHLAASNGHLEIVEVLLKNGAD---VNASD 77
Query: 111 RDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQ 170
+ L++A G L++ + LL + + + + T LH++A GHL+IV+ LL+
Sbjct: 78 LTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGA 137
Query: 171 EFAWKKDLNGHTPLHLSCSKGHLEI 195
+ +D G T +S G+ ++
Sbjct: 138 DVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA + GYT L + A+++G L+IV L +
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNATDNDGYTPLHL----AASNGHLEIVEVLLKN 69
Query: 344 GA 345
GA
Sbjct: 70 GA 71
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL+IV+ LL+A + KD +G+TPLHL+ +GHLEI E
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADV 106
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+G TPLH AA +G + I++ +L + G+T +++ N + + L
Sbjct: 107 NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+G TPLH AA +G + I++ +L + G T LHL + E V+ L++
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 102
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL N + G T LHL + E V+ L++ N D DG T LHLA
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAA 88
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 89 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL AR GH E+ +LK + V A+++ TPL
Sbjct: 26 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL 84
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
H A REG L V++ + V K ++D + L++A G L++ + LL
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLL 133
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 15 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 69
Query: 344 GA 345
GA
Sbjct: 70 GA 71
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL+IV+ LL+A + KD +G+TPLHL+ +GHLEI E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADV 94
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+G TPLH AA +G + I++ +L + G+T L + N + + L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Query: 268 ME 269
+
Sbjct: 154 QK 155
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+G TPLH AA +G + I++ +L + G T LHL + E V+ L++
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 332
N D DG T LHLA +V LLK G DVNA ++ G T D+ A ++G
Sbjct: 91 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIDNG 145
Query: 333 ALQIVPALEEAG 344
I L++A
Sbjct: 146 NEDIAEVLQKAA 157
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL N + G T LHL + E V+ L++ N D DG T LHLA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAA 76
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 125
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
L L +A AG D V+ +L A KD +G+TPLHL+ +GHLEI E
Sbjct: 2 LGKKLLEAARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGA 59
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
+G TPLH AA +G + I++ +L + G T LHL + E V+
Sbjct: 60 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVE 118
Query: 266 YLMETLNITKLANMPDNDGNTILHLA 291
L++ N D G T LA
Sbjct: 119 VLLKA---GADVNAQDKFGKTPFDLA 141
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL AR GH E+ +LK + V A+++ TPL
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL 72
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
H A REG L V++ + V K ++D + L++A G L++ + LL
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLL 121
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 344 GA 345
GA
Sbjct: 58 GA 59
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL++VK LLEA + KD NG TPLHL+ GHLE+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEIL 234
N GRTPLH AA G + ++ +L
Sbjct: 63 AKDKN-GRTPLHLAARNGHLEVVKLLL 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 179 NGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNL 238
NG TPLHL+ GHLE+ + N GRTPLH AA G + ++ +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG- 58
Query: 239 QSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
+ +G T LHL +N E VK L+E
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
+G T LHL +N E VK L+E N D +G T LHLA +V LL+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
G DVNA ++ G T L + A+ +G L++V L EAGA
Sbjct: 58 GADVNAKDKNGRTPLHL----AARNGHLEVVKLLLEAGA 92
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
TPLH A R G L VKL + V K +++ + L++A G L+V K LL + +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEA 168
+ T LH++A GHL++VK LLEA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
T LHL AR GH E+ +L+ + V A+++ TPLH A R G L VKL + V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLL 133
K +++ + L++A G L+V K LL
Sbjct: 63 AK-DKNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL+IV+ LL+A + KD +G+TPLHL+ +GHLEI E
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADV 94
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEIL 234
+G TPLH AA +G + I++ +L
Sbjct: 95 NAKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+G TPLH AA +G + I++ +L + G T LHL + E V+ L++
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 90
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSG 332
N D DG T LHLA +V LLK G DVNA ++ G T D+ A G
Sbjct: 91 -GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL----AIREG 145
Query: 333 ALQIVPALEEAG 344
I L++A
Sbjct: 146 HEDIAEVLQKAA 157
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL N + G T LHL + E V+ L++ N D DG T LHLA
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAA 76
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
+V LLK G DVNA ++ GYT L + A+ G L+IV L +AGA
Sbjct: 77 REGHLEIVEVLLKAGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKAGA 125
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A KD +G+TPLHL+ +GHLEI E
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDK 66
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+G TPLH AA +G + I++ +L + G T LHL + E V+ L++
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-- 123
Query: 273 ITKLANMPDNDGNTILHLA 291
N D G T LA
Sbjct: 124 -GADVNAQDKFGKTPFDLA 141
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL AR GH E+ +LK + V A+++ TPL
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPL 72
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV 143
H A REG L V++ + V K ++D + L++A G L++ + LL + + +
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEA 168
T ++ GH DI + L +A
Sbjct: 132 KFGKTPFDLAIREGHEDIAEVLQKA 156
Score = 35.4 bits (80), Expect = 0.082, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 344 GA 345
GA
Sbjct: 58 GA 59
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 75/154 (48%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
L A E G D K LL N + + + DG T LH++A GH ++VK LL ++
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDG-KTPLHLAAENGHKEVVKLLL-SQGADPNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
KD +G TPLHL+ GH E+ + ++G+TPLH AA G ++ +LS
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
Q A+ T G T L L ++ E VK L
Sbjct: 125 ---QGADPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAE--MRTIHGETVLHLTVKNNQYEAVKYLMET 270
+G+TPLH AA G ++ +LS Q A+ + G+T LHL +N E VK L
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLS---QGADPNAKDSDGKTPLHLAAENGHKEVVKLL--- 89
Query: 271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 330
L+ N D+DG T LHLA +V LL G D N + G T LD+ A
Sbjct: 90 LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL----ARE 145
Query: 331 SGALQIVPALEEAGA 345
G ++V LE+ G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 7/148 (4%)
Query: 52 TARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKL 109
A G+++ ++L+ ++ A++++ +TPLH A G VKL + G DP+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNAK--- 66
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
+ D ++ L++A E G +V K LL+ + + T LH++A GH ++VK LL ++
Sbjct: 67 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK-LLLSQ 125
Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITR 197
D +G TPL L+ G+ E+ +
Sbjct: 126 GADPNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
T LHL A GH+E+ +L + A +++ +TPLH A G VKL + G DP+
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGADPNAKDSD-GKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ D ++ L++A E G +V K LL+ + T L ++ G+ ++VK
Sbjct: 98 AK---DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVK- 153
Query: 165 LLEARQEFAW 174
LLE ++ W
Sbjct: 154 LLE--KQGGW 161
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
+N + VK L+E N D+DG T LHLA +V LL G D NA +
Sbjct: 11 AAENGNKDRVKDLLEN---GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
G T L + A+ +G ++V L GA
Sbjct: 68 SDGKTPLHL----AAENGHKEVVKLLLSQGA 94
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 77/195 (39%), Gaps = 40/195 (20%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
L L +A AG D V+ +L A D GHTPLHL+ GHLEI E
Sbjct: 14 LGKKLLEAARAGQDDEVR-ILMANGADVNATDWLGHTPLHLAAKTGHLEIV-EVLLKYGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
N G TPLH AA G + I++ +L HG V
Sbjct: 72 DVNAWDNYGATPLHLAADNGHLEIVEVLLK-----------HGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
N D +G T LHLA +V LLK G DVNA ++ G TA D +
Sbjct: 107 ------------NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFD-IS 153
Query: 326 SDASNSGALQIVPAL 340
D N +I+ L
Sbjct: 154 IDNGNEDLAEILQKL 168
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 63/126 (50%), Gaps = 6/126 (4%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEF-AWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
T LH++A GHL+IV+ LL+ + AW D G TPLHL+ GHLEI E
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAW--DNYGATPLHLAADNGHLEIV-EVLLKHGAD 105
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
EG TPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGN-EDLAE 163
Query: 267 LMETLN 272
+++ LN
Sbjct: 164 ILQKLN 169
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A+ GH E+ +LK ++ A +N TPL
Sbjct: 26 QDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPL 84
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV 143
H A G L V++ + V K + + + L++A G L++ + LL Y + + +
Sbjct: 85 HLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Query: 144 DGLTTSLHVSAMAGHLDIVKEL 165
T+ +S G+ D+ + L
Sbjct: 144 KFGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G+T LHLA +V LLK G DVNA + G T L + A+++G L+IV
Sbjct: 41 NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHL----AADNGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
G+L+ +K + D S+ + ++D+ + L+ AC G ++ + LL + + D +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
LH++A AG +IVK LL + + NG TPLH + SK EI
Sbjct: 77 LHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 210 XXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
+ T +H AA KG + ++ IL S ++ G T LHL + E K+L+
Sbjct: 136 DHYDA-TAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 124 GRLDVAKQ-LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
G+LD K+ +L SL T+LH + AGH +IV+ LL+ K D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWS 75
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAE 242
PLH++ S G EI + N G TPLH+AA K R I +L + +
Sbjct: 76 PLHIAASAGRDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
+ + T +H + V L L N+ D +GNT LHLA + +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHIL---LFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 303 LLKLGVDVNAINRKGYTALDVVE 325
L+ G + N++ T L V +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK 213
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGRDE 87
Query: 336 IVPALEEAGA 345
IV AL GA
Sbjct: 88 IVKALLVKGA 97
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 222 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 281
A G+++ + E + + A T LH E V++L L + N D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---LQLGVPVNDKD 70
Query: 282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
+ G + LH+A + +V LL G VNA+N+ G T L S
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
L A E G D K L+ N + + + DG T LH +A GH +IVK LL ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDG-RTPLHYAAKEGHKEIVK-LLISKGADVNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
KD +G TPLH + +GH EI + ++GRTPLH+AA +G I+ ++S
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
+ A++ T G T L L ++ E VK L
Sbjct: 125 ---KGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
++GRTPLH+AA +G I+ ++S + G T LH K E VK L
Sbjct: 35 SDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLL---- 89
Query: 272 NITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDAS 329
I+K A N D+DG T LH A +V L+ G DVN + G T LD+ A
Sbjct: 90 -ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDL----AR 144
Query: 330 NSGALQIVPALEEAGA 345
G +IV LE+ G
Sbjct: 145 EHGNEEIVKLLEKQGG 160
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
V A + TPLH A +EG VKL + V K + D + L+ A + G ++ K
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKL 88
Query: 132 LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG 191
L++ + + + T LH +A GH +IVK LL ++ D +G TPL L+ G
Sbjct: 89 LISKGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNTSDSDGRTPLDLAREHG 147
Query: 192 HLEITR 197
+ EI +
Sbjct: 148 NEEIVK 153
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
+N + VK L+E N D+DG T LH A +V L+ G DVNA +
Sbjct: 13 ENGNKDRVKDLIEN---GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 317 GYTALDVVESDASNSGALQIVPALEEAGA 345
G T L A+ G +IV L GA
Sbjct: 70 GRTPLHY----AAKEGHKEIVKLLISKGA 94
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Query: 90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
G+L+ +K + D S+ + ++D+ + L+ AC G ++ + LL + + D +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
LH++A AG +IVK LL + + NG TPLH + SK EI
Sbjct: 77 LHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK 135
Query: 210 XXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
+ T +H AA KG + ++ IL S ++ G T LHL + E K+L+
Sbjct: 136 DHYDA-TAMHRAAAKGNLKMV-HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 7/203 (3%)
Query: 124 GRLDVAKQ-LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
G+LD K+ +L SL T+LH + AGH +IV+ LL+ K D G +
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWS 75
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAE 242
PLH++ S G EI + N G TPLH+AA K R I +L + +
Sbjct: 76 PLHIAASAGXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGG-ANPD 133
Query: 243 MRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
+ + T +H + V L L N+ D +GNT LHLA + +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHIL---LFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 303 LLKLGVDVNAINRKGYTALDVVE 325
L+ G + N++ T L V +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK 213
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGXDE 87
Query: 336 IVPALEEAGAR 346
IV AL GA
Sbjct: 88 IVKALLVKGAH 98
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 222 AIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPD 281
A G+++ + E + + A T LH E V++L L + N D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL---LQLGVPVNDKD 70
Query: 282 NDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
+ G + LH+A + +V LL G VNA+N+ G T L S
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAAS 115
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
N G TPLH AA+ G + I+ E+L + + ++G T LHL E V+ L L
Sbjct: 45 NTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL---L 100
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 18/121 (14%)
Query: 83 LHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESV--LYVACERGRLDVAKQLLNYSSL 138
L EA R G+ + V++ + G D + + DN + L++A G L++ + LL + +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAV-----DNTGLTPLHLAAVSGHLEIVEVLLKHGA- 71
Query: 139 LILEVDGLT----TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLE 194
+VD T LH++AM GHL+IV+ LL+ + D+ G TPLHL+ +GHLE
Sbjct: 72 ---DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLE 127
Query: 195 I 195
I
Sbjct: 128 I 128
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 13/150 (8%)
Query: 53 ARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV----GIDPSVIYK 108
AR G ++ ++ ++ A +N + TPLH A G L V++ + +D + +Y
Sbjct: 22 ARAGQDDEVRILIANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLE 167
+ L++A G L++ + LL Y + + ++ G +T LH++A GHL+IV+ LL+
Sbjct: 81 F-----TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTG-STPLHLAADEGHLEIVEVLLK 134
Query: 168 ARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
+ +D G T +S G+ ++ +
Sbjct: 135 YGADVN-AQDKFGKTAFDISIDNGNEDLAK 163
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 31 QQDEAKIKQTVPGSLNTI-------LHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N + LHL A GH E+ +LK ++ AA+ TPL
Sbjct: 26 QDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGF-TPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
H A G L V++ + G D + + + L++A + G L++ + LL Y + +
Sbjct: 85 HLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 142 EVDGLTTSLHVSAMAGHLDIVK 163
+ T+ +S G+ D+ K
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAK 163
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N DN G T LHLA +V LLK G DV+A + G+T L + A+ +G L+IV
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL----AAMTGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKYGA 104
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
TT LH++A +GHL+IV+ LL+ + D+ G+TPLHL+ GHLEI E
Sbjct: 48 TTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIV-EVLLKNGAD 105
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
++G TPLH AA G + I+ E+L + + G+T +++ N E +
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAE 163
Query: 267 LMETLN 272
+++ LN
Sbjct: 164 ILQKLN 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
N G TPLH AA G + I+ E+L + + + G T LHL E V+ L++
Sbjct: 45 NTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN- 102
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D+DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 --GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N DN G T LHLA +V LLK G DV+A + GYT L + A+ G L+IV
Sbjct: 41 NAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHL----AAYWGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 13/144 (9%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
H A G L V++ + G D + ++ D + L++A + G L++ + LL + + +
Sbjct: 85 HLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Query: 142 EVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
++GRTPLH+AA G I+ +LS + G T LH +N E VK L L
Sbjct: 35 SDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLL---L 90
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNS 331
+ N D+DG T LH A +V LL G D N + G T LD+ A
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDL----AREH 146
Query: 332 GALQIVPALEEAGA 345
G +IV LE+ G
Sbjct: 147 GNEEIVKLLEKQGG 160
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 72/154 (46%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
L A E G D K LL N + + DG T LH +A GH +IVK LL +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDG-RTPLHYAAENGHKEIVKLLLSKGAD-PNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
KD +G TPLH + GH EI + ++GRTPLH+AA G I+ +LS
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
+ A+ T G T L L ++ E VK L
Sbjct: 125 ---KGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 74 AENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
A + TPLH A G VKL + G DP+ + D + L+ A E G ++ K
Sbjct: 32 ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKL 88
Query: 132 LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG 191
LL+ + + T LH +A GH +IVK LL + D +G TPL L+ G
Sbjct: 89 LLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHG 147
Query: 192 HLEITR 197
+ EI +
Sbjct: 148 NEEIVK 153
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPS 104
T LH A GH+E+ +L + A +++ TPLH A G VKL + G DP+
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ D + L+ A E G ++ K LL+ + T L ++ G+ +IVK
Sbjct: 98 A---KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVK- 153
Query: 165 LLEAR 169
LLE +
Sbjct: 154 LLEKQ 158
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRK 316
+N + VK L+E N D+DG T LH A +V LL G D NA +
Sbjct: 13 ENGNKDRVKDLLEN---GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD 69
Query: 317 GYTALDVVESDASNSGALQIVPALEEAGA 345
G T L A+ +G +IV L GA
Sbjct: 70 GRTPLHY----AAENGHKEIVKLLLSKGA 94
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 60/114 (52%), Gaps = 8/114 (7%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILS--LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
+ G+TPLH AAIKG + I++ +L ++ +A+ G+T LHL E V+ L++
Sbjct: 45 DSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM---GDTPLHLAALYGHLEIVEVLLK 101
Query: 270 TLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 102 N---GADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A G+ D + L+ + + E D T LH++A+ GHL+IV+ LL+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AA 76
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G TPLHL+ GHLEI E G TPLH AA G + I++ +L
Sbjct: 77 DKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+ G+T +++ N E + +++ LN
Sbjct: 136 G-ADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D+ G T LHLA +V LLK G DVNA ++ G T L + A+ G L+IV
Sbjct: 41 NAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHL----AALYGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 15/145 (10%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKM-ETP 82
Q DE +I +N T LHL A GH E+ +LK ++ AA +KM +TP
Sbjct: 26 QDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA--DKMGDTP 83
Query: 83 LHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
LH A G L V++ + G D + + + L++A + G L++ + LL Y + +
Sbjct: 84 LHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
G+L +K + D S+ + ++D+ + L+ AC G ++ + LL + + D +
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 77
Query: 150 LHVSAMAGHLDIVKELL-EARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXX 208
LH++A AG +IVK LL + Q A + NG TPLH + SK EI
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 209 XXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
E T +H AA KG + +I IL S ++ G T LHL + E K L+
Sbjct: 136 KDHYEA-TAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 193
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 84/214 (39%), Gaps = 34/214 (15%)
Query: 144 DGLTTSLHVS--AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXX 201
+G ++L V A +G L+ +KE + A + A + D + T LH +CS GH EI E
Sbjct: 3 EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFLL 61
Query: 202 XXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQY 261
+ G +PLH AA GR I+ +L Q + +G T LH N++
Sbjct: 62 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRH 120
Query: 262 EAVKYLMET------------------------------LNITKLANMPDNDGNTILHLA 291
E L+E L N+ D +GNT LHLA
Sbjct: 121 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Query: 292 TAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
+ L+ G + N++ T L V +
Sbjct: 181 CDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGRDE 88
Query: 336 IVPALEEAGAR 346
IV AL GA+
Sbjct: 89 IVKALLGKGAQ 99
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 250 TVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD 309
T LH E V++L L + N D+ G + LH+A + +V LL G
Sbjct: 43 TALHWACSAGHTEIVEFL---LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQ 99
Query: 310 VNAINRKGYTALDVVES 326
VNA+N+ G T L S
Sbjct: 100 VNAVNQNGCTPLHYAAS 116
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVA 120
TPLH AC E R+ KL V S IY N++ ++ L VA
Sbjct: 175 TPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 5/180 (2%)
Query: 90 GRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTS 149
G+L +K + D S+ + ++D+ + L+ AC G ++ + LL + + D +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSP 76
Query: 150 LHVSAMAGHLDIVKELL-EARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXX 208
LH++A AG +IVK LL + Q A + NG TPLH + SK EI
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQ--NGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 209 XXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLM 268
E T +H AA KG + +I IL S ++ G T LHL + E K L+
Sbjct: 135 KDHYEA-TAMHRAAAKGNLKMI-HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 34/215 (15%)
Query: 143 VDGLTTSLHVS--AMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXX 200
++G ++L V A +G L+ +KE + A + A + D + T LH +CS GH EI E
Sbjct: 1 MEGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIV-EFL 59
Query: 201 XXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQ 260
+ G +PLH AA GR I+ +L Q + +G T LH N+
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNR 118
Query: 261 YEAVKYLMET------------------------------LNITKLANMPDNDGNTILHL 290
+E L+E L N+ D +GNT LHL
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
Query: 291 ATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
A + L+ G + N++ T L V +
Sbjct: 179 ACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
LA D D T LH A + T +V +LL+LGV VN + G++ L + A+++G +
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI----AASAGRDE 87
Query: 336 IVPALEEAGAR 346
IV AL GA+
Sbjct: 88 IVKALLGKGAQ 98
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 37/136 (27%)
Query: 191 GHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGET 250
G LE +E + RT LHWA G I++ +L L +
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----------- 65
Query: 251 VLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDV 310
N D+ G + LH+A + +V LL G V
Sbjct: 66 --------------------------VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 99
Query: 311 NAINRKGYTALDVVES 326
NA+N+ G T L S
Sbjct: 100 NAVNQNGCTPLHYAAS 115
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVA 120
TPLH AC E R+ KL V S IY N++ ++ L VA
Sbjct: 174 TPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA 212
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
G TPLH AA G + I+ E+L N G T LHL K E V+ L L
Sbjct: 47 GDTPLHLAARVGHLEIV-EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVL---LKY 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL+IV+ LL+ + D +G TPLHL+ +GHLEI E
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIV-EVLLKYGADV 106
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
G TPLH AA G + I++ +L + G+T +++ N + + L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
V AE+ +TPLH A R G L V++ + G D + L+ + L++A +RG L++
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD---VNALDFSGSTPLHLAAKRGHLEIV 96
Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
+ LL Y + + + +T LH++A GHL+IV+ LL+ + +D G T +S
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 190 KGHLEI 195
G+ ++
Sbjct: 156 NGNEDL 161
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL-NYSSLLIL 141
L EA R G+ + V++ + + + + + ++ L++A G L++ + LL N + + L
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ G +T LH++A GHL+IV+ LL+ + D G TPLHL+ GHLEI
Sbjct: 77 DFSG-STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLEI 128
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL AR GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPL 84
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDN---ESVLYVACERGRLDVAKQLLNYSSLLI 140
H A + G L V++ + V N D+ + L++A + G L++ + LL Y + +
Sbjct: 85 HLAAKRGHLEIVEVLLKYGADV----NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G+T LHLA +V LLK G DVNA++ G T L + A+ G L+IV
Sbjct: 41 NAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHL----AAKRGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKYGA 104
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+GRTPLH AA G ++ ++S + G T LH +N E VK L
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLL----- 89
Query: 273 ITKLA--NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASN 330
I+K A N D+DG T LH A +V L+ G DVN + G T LD+ A
Sbjct: 90 ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL----ARE 145
Query: 331 SGALQIVPALEEAGA 345
G ++V LE+ G
Sbjct: 146 HGNEEVVKLLEKQGG 160
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 9/154 (5%)
Query: 117 LYVACERGRLDVAKQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWK 175
L A E G D K L+ N + + + DG T LH +A GH ++VK LL ++
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDG-RTPLHHAAENGHKEVVK-LLISKGADVNA 65
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
KD +G TPLH + GH E+ + ++GRTPLH AA G ++ ++S
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 236 LNLQSAEMRT--IHGETVLHLTVKNNQYEAVKYL 267
+ A++ T G T L L ++ E VK L
Sbjct: 125 ---KGADVNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 52 TARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNR 111
A G+++ ++++ ++ A++++ TPLH A G VKL + V K +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAK-DS 68
Query: 112 DNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQE 171
D + L+ A E G +V K L++ + + + T LH +A GH ++VK LL ++
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVK-LLISKGA 127
Query: 172 FAWKKDLNGHTPLHLSCSKGHLEITR 197
D +G TPL L+ G+ E+ +
Sbjct: 128 DVNTSDSDGRTPLDLAREHGNEEVVK 153
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
T LH A GH+E+ ++ + V A++ TPLH A G VKL + V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN 97
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELL 166
K + D + L+ A E G +V K L++ + + T L ++ G+ ++VK LL
Sbjct: 98 AK-DSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVK-LL 155
Query: 167 EARQEFAW 174
E ++ W
Sbjct: 156 E--KQGGW 161
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 255 TVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
+N + VK L+E N D+DG T LH A +V L+ G DVNA +
Sbjct: 11 AAENGNKDRVKDLIEN---GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
G T L A+ +G ++V L GA
Sbjct: 68 SDGRTPL----HHAAENGHKEVVKLLISKGA 94
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXX 203
D +T LH++A GH +IV+ LL+ + +D +G TPLHL+ GHLEI E
Sbjct: 45 DQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIV-EVLLKY 102
Query: 204 XXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEA 263
G TPLH AA +G + I+ E+L + + G+T +++ N E
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-ED 160
Query: 264 VKYLMETLN 272
+ +++ LN
Sbjct: 161 LAEILQKLN 169
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
++G TPLH AA G I+ E+L + R G T LHL N E V+ L L
Sbjct: 45 DQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVL---L 100
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 101 KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
G T LHL E V+ L++ N D DG T LHLA +V LLK
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKH---GADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 307 GVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
G DVNA + G T L + A++ G L+IV L + GA
Sbjct: 103 GADVNAQDAYGLTPLHL----AADRGHLEIVEVLLKHGA 137
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A GH E+ +LK ++ A + + TPL
Sbjct: 26 QDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW-TPL 84
Query: 84 HEACREGRLNFVKLFVGIDPSV----IYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
H A G L V++ + V Y L + L++A +RG L++ + LL + + +
Sbjct: 85 HLAADNGHLEIVEVLLKYGADVNAQDAYGL-----TPLHLAADRGHLEIVEVLLKHGADV 139
Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
++D S L+VA GR D+ LL + + LH++ GH +VK LL++
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINI 229
+ KKDL+G+TPL +CS GH E+ N+G T LH A I+ + +
Sbjct: 143 AK-PNKKDLSGNTPLIYACSGGHHELV-ALLLQHGASINASNNKGNTALHEAVIEKHVFV 200
Query: 230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
+ E+L L+ S ++ T + +N++ +ME L +
Sbjct: 201 V-ELLLLHGASVQVLNKRQRTAVDCAEQNSK------IMELLQV 237
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 31/157 (19%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET-- 270
+G +PLH AA+ GR ++I +L + +A R LHL + ++ VK L+++
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNA 143
Query: 271 -LNITKLA---------------------------NMPDNDGNTILHLATAGKLTTMVIY 302
N L+ N +N GNT LH A K +V
Sbjct: 144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203
Query: 303 LLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPA 339
LL G V +N++ TA+D E ++ LQ+VP+
Sbjct: 204 LLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYK 108
LH+ A G +L +LK A N PLH AC++G VK + + K
Sbjct: 90 LHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK 148
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELL 166
N ++Y AC G ++ LL + + + + T+LH + + H+ +V+ LL
Sbjct: 149 DLSGNTPLIY-ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 4/156 (2%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A GR D + L+ + + E T LH++A GHL+IV+ LL+ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AV 76
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G TPL L+ GHLEI E EG TPLH AA+ G + I+ E+L
Sbjct: 77 DHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIV-EVLLK 134
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
N + G+T +++ N E + +++ LN
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 169
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 71/171 (41%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A +D +G TPLHL+ GHLEI E +
Sbjct: 21 AARAGRDDEVR-ILMANGADVNAEDASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDH 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPL AA+ G + I++ +L +G V
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLK-----------NGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D +G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 -----NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNES---VLYVACERGRLDVAKQLL-NYSSL 138
L EA R GR + V++ + V N ++ S L++A G L++ + LL N + +
Sbjct: 18 LLEAARAGRDDEVRILMANGADV----NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
++ G+T L ++A+ GHL+IV+ LL+ + D+ GHTPLHL+ GHLEI
Sbjct: 74 NAVDHAGMT-PLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEI 128
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
V AE+ TPLH A G L V++ + G D + + + + L +A G L++
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV---DHAGMTPLRLAALFGHLEIV 96
Query: 130 KQLL-NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
+ LL N + + +++G T LH++AM GHL+IV+ LL+ + +D G T +S
Sbjct: 97 EVLLKNGADVNANDMEG-HTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISI 154
Query: 189 SKGHLEI 195
G+ ++
Sbjct: 155 DNGNEDL 161
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNA++ G T L + A+ G L+IV
Sbjct: 41 NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL----AALFGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA + G+T L + A+ +G L+IV L +
Sbjct: 15 GKKLLEAARAGRDDEVRI-LMANGADVNAEDASGWTPLHL----AAFNGHLEIVEVLLKN 69
Query: 344 GA 345
GA
Sbjct: 70 GA 71
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
G TPLH AA G + I+ E+L N G T LHL E V+ L++
Sbjct: 47 GWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D++G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
T LHL A +GH E+ +LK + V A + TPLH A G L V++ + V
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKEL 165
K + + + L++A RG L++ + LL Y + + + T+ +S G+ D+ + L
Sbjct: 108 AK-DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 81 TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
TPLH A G L V++ + G D + L + L++A G L++ + LL +
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ + D T LH++A GHL+IV+ LL+ + +D G T +S + G+ ++
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGNEDL 161
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV 99
+T LHL A FGH E+ +LK + V A+++ TPLH A G L V++ +
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNA + G T L + A++ G L+IV
Sbjct: 41 NAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHL----AAHFGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 46/221 (20%)
Query: 108 KLNRDNESVLYVAC---ERG-RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
+L D +S L++A E+ ++V +Q+ + L + + T LH++ + +I +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 164 ELLEARQEFAWKKDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPL 218
LL A + + D G+TPLHL+C +G L +T+ N G T L
Sbjct: 63 ALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 219 HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 278
H A+I G + I++ ++SL +G T LHL V L N
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN 163
Query: 279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
PD +V LLK G DVN + +GY+
Sbjct: 164 -PD-----------------LVSLLLKCGADVNRVTYQGYS 186
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 46/182 (25%)
Query: 21 GDTQAFLSLIQQDEA---KIKQTVPGSL----------NTILHLTARFGHEELASEILKL 67
GD+ L++I +++A ++ + V G L T LHL E+A +L
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 68 -C-PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR 125
C PE+ + + TPLH AC +G L V VL +C
Sbjct: 68 GCDPEL---RDFRGNTPLHLACEQGCLASV-------------------GVLTQSCTTPH 105
Query: 126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH 185
L + NY+ T LH++++ G+L IV+ L+ + ++ NG T LH
Sbjct: 106 LHSILKATNYNG---------HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 186 LS 187
L+
Sbjct: 157 LA 158
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/195 (30%), Positives = 75/195 (38%), Gaps = 40/195 (20%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
L L +A AG D V+ +L A D G TPLHL + GHLEI E
Sbjct: 14 LGKKLLEAARAGQDDEVR-ILMANGADVNANDWFGITPLHLVVNNGHLEII-EVLLKYAA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
G TPLH AA +G + I++ +L +G V
Sbjct: 72 DVNASDKSGWTPLHLAAYRGHLEIVEVLLK-----------YGADV-------------- 106
Query: 266 YLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
N D G T LHLA +V LLK G DVNA ++ G TA D +
Sbjct: 107 ------------NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFD-IS 153
Query: 326 SDASNSGALQIVPAL 340
D N +I+ L
Sbjct: 154 IDNGNEDLAEILQKL 168
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
G T LHL V N E ++ L L N D G T LHLA +V LLK G
Sbjct: 47 GITPLHLVVNNGHLEIIEVL---LKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYG 103
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
DVNA++ +GYT L + D G L+IV L + GA
Sbjct: 104 ADVNAMDYQGYTPLHLAAED----GHLEIVEVLLKYGA 137
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L++ G L++ + LL Y++ + T LH++A GHL+IV+ LL+ +
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AM 109
Query: 177 DLNGHTPLHLSCSKGHLEI 195
D G+TPLHL+ GHLEI
Sbjct: 110 DYQGYTPLHLAAEDGHLEI 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 13/144 (9%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL GH E+ +LK + V A ++ TPL
Sbjct: 26 QDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
H A G L V++ + G D + ++ + L++A E G L++ + LL Y + +
Sbjct: 85 HLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Query: 142 EVDGLTTSLHVSAMAGHLDIVKEL 165
+ T+ +S G+ D+ + L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY-SSLL 139
TPLH G L +++ + V ++ + L++A RG L++ + LL Y + +
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
++ G T LH++A GHL+IV+ LL+ + +D G T +S G+ ++
Sbjct: 108 AMDYQGYT-PLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 92/220 (41%), Gaps = 46/220 (20%)
Query: 109 LNRDNESVLYVAC---ERG-RLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
L D +S L++A E+ ++V +Q+ + L + + T LH++ + +I +
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGHLE----ITREXXXXXXXXXXXXXN-EGRTPLH 219
LL A + + D G+TPLHL+C +G L +T+ N G T LH
Sbjct: 61 LLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 220 WAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM 279
A+I G + I++ ++SL +G T LHL V L N
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV------------------DLQN- 160
Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
PD +V LLK G DVN + +GY+
Sbjct: 161 PD-----------------LVSLLLKCGADVNRVTYQGYS 183
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 46/182 (25%)
Query: 21 GDTQAFLSLIQQDEA---KIKQTVPGSL----------NTILHLTARFGHEELASEILKL 67
GD+ L++I +++A ++ + V G L T LHL E+A +L
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 64
Query: 68 -C-PEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGR 125
C PE+ + + TPLH AC +G L V VL +C
Sbjct: 65 GCDPEL---RDFRGNTPLHLACEQGCLASV-------------------GVLTQSCTTPH 102
Query: 126 LDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLH 185
L + NY+ T LH++++ G+L IV+ L+ + ++ NG T LH
Sbjct: 103 LHSILKATNYNG---------HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 153
Query: 186 LS 187
L+
Sbjct: 154 LA 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/171 (30%), Positives = 67/171 (39%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ L+ + D NG TPLHL+ + G LEI E +
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDD-NGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH AA G + I++ +L HG V
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLK-----------HGADV--------------------- 98
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G T LHLA +V LLK G DVNA + G TA D+
Sbjct: 99 -----NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 231 DEILSLNLQSAEMRTI--HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
DE+ L A++ +G T LHL N Q E V+ L++ N D+ G T L
Sbjct: 20 DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKN---GADVNASDSAGITPL 76
Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
HLA +V LLK G DVNA +R G+T L + A+ SG L+IV L + GA
Sbjct: 77 HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL----AALSGQLEIVEVLLKHGA 129
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L++A G+L++ + LL + + T LH++A GHL+IV+ LL+ +
Sbjct: 43 LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AY 101
Query: 177 DLNGHTPLHLSCSKGHLEI 195
D G TPLHL+ G LEI
Sbjct: 102 DRAGWTPLHLAALSGQLEI 120
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
V A ++ TPLH A G+L V++ + G D + + + L++A G L++
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD---VNASDSAGITPLHLAAYDGHLEIV 88
Query: 130 KQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCS 189
+ LL + + + T LH++A++G L+IV+ LL+ + +D G T +S +
Sbjct: 89 EVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVN-AQDALGLTAFDISIN 147
Query: 190 KGHLEI 195
+G ++
Sbjct: 148 QGQEDL 153
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV 99
T LHL A GH E+ +LK + V A + TPLH A G+L V++ +
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLL 125
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
G TPLH AA G + I+ E+L N + G T LHL + E V+ L++
Sbjct: 47 GWTPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D+ G T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 103 GADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
L EA R G+ + V++ + V + + + L++A G L++ + LL + + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++A GHL+IV+ LL+ + D +G TPLHL+ +GHLEI
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEI 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A FGH E+ +LK + V A++ TPL
Sbjct: 26 QDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDSLGVTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
H A R G L V++ + G D + + + L++A +RG L++ + LL
Sbjct: 85 HLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLL 133
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNA + G T L + A+ G L+IV
Sbjct: 41 NARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHL----AARRGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/110 (38%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
GRTPLH AA G + I+ E+L N +G T LHL E V+ L L
Sbjct: 35 GRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL---LKY 90
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G T L+LA +V LLK G DVNA ++ G TA D+
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDI 140
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++A GHL+IV+ LL + D NG TPLHL+ S GHLEI E
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIV-EVLLKYGADV 94
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEIL 234
G TPL+ AA G + I++ +L
Sbjct: 95 NAKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 83 LHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL-NYSSLL 139
L EA R G+ + V++ + G D + R + L++A G L++ + LL N + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGR---TPLHMAAAVGHLEIVEVLLRNGADVN 62
Query: 140 ILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
++ +G TT LH++A GHL+IV+ LL+ + KD G TPL+L+ GHLEI
Sbjct: 63 AVDTNG-TTPLHLAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEI 116
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL N A +G T LH+ E V+ L+ N D +G T LHLA
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN---GADVNAVDTNGTTPLHLAA 76
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
+ +V LLK G DVNA + G T L + A+ G L+IV L + GA
Sbjct: 77 SLGHLEIVEVLLKYGADVNAKDATGITPLYL----AAYWGHLEIVEVLLKHGA 125
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I N T LH+ A GH E+ +L+ ++ A + TPL
Sbjct: 14 QDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGT-TPL 72
Query: 84 HEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEV 143
H A G L V++ + V K + + LY+A G L++ + LL + + + +
Sbjct: 73 HLAASLGHLEIVEVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Query: 144 DGLTTSLHVSAMAGHLDIVKEL 165
T+ +S G+ D+ + L
Sbjct: 132 KFGKTAFDISIDIGNEDLAEIL 153
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 87 CREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL 146
CREG V+L++ + + + + S L+ AC GR V + L+ + + + G
Sbjct: 13 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 72
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHLEITRE 198
T LH++A GH DIV++LL+ +K D+N G+ PLH +C G ++ +
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQVAED 123
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
+PLH ACREGR V++ + + + I +NR +++ L++A G D+ ++LL Y + +
Sbjct: 41 SPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELL 166
+ LH + G + ++L+
Sbjct: 100 AVNEHGNVPLHYACFWGQDQVAEDLV 125
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
+ G +PLHWA +GR ++ E+L + + +T LHL + + V+ L++
Sbjct: 37 DHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 93
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
N + GN LH A + L+ G V+ N+ G +D ++
Sbjct: 94 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGR 91
+T LHL A GH ++ ++L+ + + A NE PLH AC G+
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ 117
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
HG + LH + + V+ L+ + N D+ T LHLA + +V LL+
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQY 94
Query: 307 GVDVNAINRKGYTAL--------DVVESDASNSGAL 334
D+NA+N G L D V D +GAL
Sbjct: 95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
G TPLH AA G + I+ E+L N G T LHL E V+ L++
Sbjct: 47 GWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN--- 102
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
N D++G T LHLA +V LLK G DVNA ++ G TA D + D N
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDL 161
Query: 334 LQIVPAL 340
+I+ L
Sbjct: 162 AEILQKL 168
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
L EA R G+ + V++ + + + + + + L++A G L++ + LL + + +
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++A GHL++V+ LL+ + D NG TPLHL+ + GHLEI
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEI 128
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 81 TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNE---SVLYVACERGRLDVAKQLLNY 135
TPLH A G L V++ + G D +N D+ + L++A +RG L+V + LL
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGAD------VNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 136 SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ + T LH++A GHL+IV+ LL+ + +D G T +S G+ ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D+ G T LHLA +V LLK G DVNA + G T L + A++ G L++V
Sbjct: 41 NASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHL----AADRGHLEVV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKNGA 104
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A D +G TPLHL+ + GHLEI E
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH AA+ G + I++ +L HG V
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLK-----------HGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 -----NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEV 143
EA R G+ + V++ + + + + + + L++A G L++ + LL + + + +++
Sbjct: 20 EAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
G +T LH++A+ GHL+IV+ LL+ + D G TPLHL+ GHLEI
Sbjct: 79 XG-STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVE 130
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 52 TARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKL 109
AR G ++ IL V A + TPLH A G L V++ + G D + I
Sbjct: 21 AARAGQDD-EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--- 76
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTT----SLHVSAMAGHLDIVKEL 165
+ + L++A G L++ + LL + + +V+ + T LH++A+ GHL+IV+ L
Sbjct: 77 DIXGSTPLHLAALIGHLEIVEVLLKHGA----DVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
L+ + +D G T +S G+ ++
Sbjct: 133 LKHGADVN-AQDKFGKTAFDISIDNGNEDLAE 163
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A +GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
H A G L V++ + G D + + ++ L++A G L++ + LL + +
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTW---GDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNAI+ G T L + A+ G L+IV
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL----AALIGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 87 CREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL 146
CREG V+L++ + + + + S L+ AC GR V + L+ + + + G
Sbjct: 8 CREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD 67
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHLEITRE 198
T LH++A GH DIV++LL+ +K D+N G+ PLH +C G ++ +
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQVAED 118
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
+PLH ACREGR V++ + + + I +NR +++ L++A G D+ ++LL Y + +
Sbjct: 36 SPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELL 166
+ LH + G + ++L+
Sbjct: 95 AVNEHGNVPLHYACFWGQDQVAEDLV 120
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 212 NEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETL 271
+ G +PLHWA +GR ++ E+L + + +T LHL + + V+ L++
Sbjct: 32 DHGFSPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-- 88
Query: 272 NITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
N + GN LH A + L+ G V+ N+ G +D ++
Sbjct: 89 -YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGR 91
+T LHL A GH ++ ++L+ + + A NE PLH AC G+
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQ 112
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 11/96 (11%)
Query: 247 HGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKL 306
HG + LH + + V+ L+ + N D+ T LHLA + +V LL+
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLLQY 89
Query: 307 GVDVNAINRKGYTAL--------DVVESDASNSGAL 334
D+NA+N G L D V D +GAL
Sbjct: 90 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A D +G TPLHL+ + GHLEI E
Sbjct: 21 AARAGQDDEVR-ILMANGADVNATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDI 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH AA+ G + I++ +L HG V
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLK-----------HGADV--------------------- 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D G+T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 107 -----NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLL-ILEV 143
EA R G+ + V++ + + + + + + L++A G L++ + LL + + + +++
Sbjct: 20 EAARAGQDDEVRILMA-NGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI 78
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
G +T LH++A+ GHL+IV+ LL+ + D G TPLHL+ GHLEI
Sbjct: 79 MG-STPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVE 130
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 52 TARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKL 109
AR G ++ IL V A + TPLH A G L V++ + G D + I +
Sbjct: 21 AARAGQDD-EVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM 79
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTT----SLHVSAMAGHLDIVKEL 165
+ L++A G L++ + LL + + +V+ + T LH++A+ GHL+IV+ L
Sbjct: 80 GS---TPLHLAALIGHLEIVEVLLKHGA----DVNAVDTWGDTPLHLAAIMGHLEIVEVL 132
Query: 166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
L+ + +D G T +S G+ ++
Sbjct: 133 LKHGADVN-AQDKFGKTAFDISIDNGNEDLAE 163
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A +GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
H A G L V++ + G D + + ++ L++A G L++ + LL + +
Sbjct: 85 HLAALIGHLEIVEVLLKHGADVNAVDTW---GDTPLHLAAIMGHLEIVEVLLKHGA 137
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNAI+ G T L + A+ G L+IV
Sbjct: 41 NATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHL----AALIGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSV-IYKLNRDNESVLYVACERGRLDVAK 130
VA + E ++ PLHEA + G L++++ +D V + L++ + LY AC G D+ +
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLREC--LDNRVGVNGLDKAGSTALYWACHGGHKDIVE 123
Query: 131 QLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELL 166
L ++ + + + L T+LH +A G+ DIV+ LL
Sbjct: 124 XLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 136 SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
S+ + + + + LH +A G+L ++E L+ R D G T L+ +C GH +I
Sbjct: 63 SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDI 121
Query: 196 TREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIH 247
G T LH AA KG +I+ +L+ ++ ++R I
Sbjct: 122 VEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIE 172
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
LH + M V+ELL ++ +KD +G PLH S S EIT
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
+ G TP H A G + ++ + L+ + T G T LHL V +E ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
L+E ++ D LH A + ++ L LG VN +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 82 PLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
PLH+AC E V+ + PS++ + ++D L+ + ++ LL+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 E---VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHL 193
+ D T H++ G+L++VK L + K DLN G T LHL+ K
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 194 EITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
E++ + + PLH AA G + +I+ + L + + G T L
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
+ +A L+E ++ DN G
Sbjct: 180 HALAEGHGDAAVLLVEKYGAE--YDLVDNKG 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 276
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 277 ANMPDNDGNTILHLA-TAGKLTTM-VIYLLKLGVDVNAINRKGYTAL 321
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 240
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 241 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 300
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 301 IYLLKLGVDV 310
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAE--NEKMETPLHEACREGRLNFVKLFVG--IDPS 104
LH + F E+ S +L + + ++ TP H AC G L VK + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ K+ + L++A + +V++ L+ + + ++ LH +A G L +++
Sbjct: 100 -LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGH 192
L + +D G TPL + ++GH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGH 186
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
LH + M V+ELL ++ +KD +G PLH S S EIT
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
+ G TP H A G + ++ + L+ + T G T LHL V +E ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
L+E ++ D LH A + ++ L LG VN +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 82 PLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
PLH+AC E V+ + PS++ + ++D L+ + ++ LL+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 E---VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHL 193
+ D T H++ G+L++VK L + K DLN G T LHL+ K
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 194 EITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
E++ + + PLH AA G + +I+ + L + + G T L
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
+ +A L+E ++ DN G
Sbjct: 180 HALAEGHGDAAVLLVEKYGAE--YDLVDNKG 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 276
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 277 ANMPDNDGNTILHLA-TAGKLTTM-VIYLLKLGVDVNAINRKGYTAL 321
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 240
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 241 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 300
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 301 IYLLKLGVDV 310
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAE--NEKMETPLHEACREGRLNFVKLFVG--IDPS 104
LH + F E+ S +L + + ++ TP H AC G L VK + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ K+ + L++A + +V++ L+ + + ++ LH +A G L +++
Sbjct: 100 -LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGH 192
L + +D G TPL + ++GH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGH 186
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 7/176 (3%)
Query: 150 LHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE--XXXXXXXXX 207
LH + M V+ELL ++ +KD +G PLH S S EIT
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMR-TIHGETVLHLTVKNNQYEAVKY 266
+ G TP H A G + ++ + L+ + T G T LHL V +E ++
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125
Query: 267 LMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVD-VNAINRKGYTAL 321
L+E ++ D LH A + ++ L LG VN +++G+T L
Sbjct: 126 LIENGASVRIK---DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 15/211 (7%)
Query: 82 PLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLIL 141
PLH+AC E V+ + PS++ + ++D L+ + ++ LL+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 142 E---VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN-----GHTPLHLSCSKGHL 193
+ D T H++ G+L++VK L + K DLN G T LHL+ K
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDR----PLKPDLNKITNQGVTCLHLAVGKKWF 120
Query: 194 EITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
E++ + + PLH AA G + +I+ + L + + G T L
Sbjct: 121 EVS-QFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF 179
Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDG 284
+ +A L+E ++ DN G
Sbjct: 180 HALAEGHGDAAVLLVEKYGAE--YDLVDNKG 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKL 276
PLH A ++ + E+L + G LH +V +E +L+ + L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 277 ANMPDNDGNTILHLA-TAGKLTTM-VIYLLKLGVDVNAINRKGYTAL 321
+ PD+ G T H+A + G L + +Y L D+N I +G T L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL 111
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 183 PLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL--NLQS 240
PLH +C + +E +GR PLHW+ I +LS N+
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 241 AEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMV 300
+ G T H+ E VK L + L N N G T LHLA K +
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVS 123
Query: 301 IYLLKLGVDV 310
+L++ G V
Sbjct: 124 QFLIENGASV 133
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 5/148 (3%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAE--NEKMETPLHEACREGRLNFVKLFVG--IDPS 104
LH + F E+ S +L + + ++ TP H AC G L VK + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKE 164
+ K+ + L++A + +V++ L+ + + ++ LH +A G L +++
Sbjct: 100 -LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 165 LLEARQEFAWKKDLNGHTPLHLSCSKGH 192
L + +D G TPL + ++GH
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGH 186
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
+PLHEAC G L+ VK+ + + + + D + L+ AC G D LL + + +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
E D L + +H +A GH++ V L+ K G TPL+L+C
Sbjct: 153 PESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLAC 198
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 80/189 (42%), Gaps = 24/189 (12%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNG-----HTPLHLSCSKGHLEITREXXXX 202
+ LH + + GHL VK LL+ + +NG HTPL +C G +
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQ------VNGVTADWHTPLFNACVSGSWDCVN--LLL 145
Query: 203 XXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYE 262
++ +P+H AA +G + ++ +++ + + + H T L+L +N Q
Sbjct: 146 QHGASVQPESDLASPIHEAARRGHVECVNSLIAYG-GNIDHKISHLGTPLYLACENQQRA 204
Query: 263 AVKYLMET---LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYT 319
VK L+E+ +N K + P LH + L+ G D A N +G
Sbjct: 205 CVKKLLESGADVNQGKGQDSP-------LHAVVRTASEELACLLMDFGADTQAKNAEGKR 257
Query: 320 ALDVVESDA 328
+++V ++
Sbjct: 258 PVELVPPES 266
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
+ +P+HEA R G + V + ++ +K++ + LY+ACE + K+LL S
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE-SGA 214
Query: 139 LILEVDGLTTSLHV 152
+ + G + LH
Sbjct: 215 DVNQGKGQDSPLHA 228
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 7/180 (3%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEF-AWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
T LH +A+ +D+VK + DLN TPLH + +GHL + +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS-TPLHWATRQGHLSMVVQLMKYGADP 102
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
EG + +H AA G +I+ +++ Q +M +G T L
Sbjct: 103 SLID-GEGCSCIHLAAQFGHTSIVAYLIAKG-QDVDMMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 267 LMETLNITKLANMPDN-DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
L+ T N++ N+ D NT LH A TT++ LL+ G +V+A N KG +ALD+ +
Sbjct: 161 LLLTFNVS--VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 72/192 (37%), Gaps = 41/192 (21%)
Query: 81 TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
TPLH A R+G L+ V + G DPS+I D E
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLI-----DGEGC---------------------- 110
Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH-LEITR 197
+ +H++A GH IV L+ Q+ D NG TPL + + H ++ TR
Sbjct: 111 ---------SCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTR 160
Query: 198 EXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVK 257
T LHWA + G +I +L + + + I GE+ L L +
Sbjct: 161 LLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG-ANVDAQNIKGESALDLAKQ 219
Query: 258 NNQYEAVKYLME 269
+ +L E
Sbjct: 220 RKNVWMINHLQE 231
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
E T LHWAAI RI+++ +S ++ T LH + V LM+
Sbjct: 41 ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--- 97
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
++ D +G + +HLA T++V YL+ G DV+ +++ G T L
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A D GHTPLHL+ GHLEI E N
Sbjct: 21 AARAGQDDEVR-ILTANGADVNANDYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGN 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
GRTPLH AA + I+ E+L + + G+T +++ N + + L +
Sbjct: 79 TGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL+ N G T LHL E V+ L++ N N G T LHLA
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKN---GADVNATGNTGRTPLHLAA 88
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
+V LLK G DVNA ++ G TA D+
Sbjct: 89 WADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++AM GHL+IV+ LL+ + + G TPLHL+ HLEI
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLHLAAWADHLEI 95
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A GH E+ +LK ++ A N TPL
Sbjct: 26 QDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG-RTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
H A L V++ + G D + K + + ++ + G D+A+ L
Sbjct: 85 HLAAWADHLEIVEVLLKHGADVNAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
+G TPLH AA G + ++LS R+ G T LHL KN E VK L+
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-- 64
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
N DGNT HLA +V L G DVNA
Sbjct: 65 -GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
G T LH KN E VK L L+ N DGNT LHLA +V LL G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL---LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGA 345
DVNA ++ G T E A +G +IV L+ GA
Sbjct: 66 ADVNARSKDGNTP----EHLAKKNGHHEIVKLLDAKGA 99
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
++D + L+ A + G + K+LL+ + + T LH++A GH +IVK LL A+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64
Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITR 197
+ +G+TP HL+ GH EI +
Sbjct: 65 GADVNARSKDGNTPEHLAKKNGHHEIVK 92
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEF-AWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
T LH +A GH + VK+LL + A KD G+TPLHL+ GH EI +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVK-LLLAKGAD 67
Query: 207 XXXXXNEGRTPLHWAAIKGRINII 230
+G TP H A G I+
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIV 91
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
NT LH A+ GH E ++L + V A ++ TPLH A + G VKL + V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 106 IYKLNRDNESVLYVACERGRLDVAKQL 132
+ ++D + ++A + G ++ K L
Sbjct: 69 NAR-SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 283 DGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEE 342
DGNT LH A V LL G DVNA ++ G T L + A+ +G +IV L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL----AAKNGHAEIVKLLLA 63
Query: 343 AGA 345
GA
Sbjct: 64 KGA 66
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLI 140
+PLHEAC G L+ VK+ + V + D + L+ AC G D LL + + +
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 96
Query: 141 LEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSC 188
E D L + +H +A GH++ V L+ K G TPL+L+C
Sbjct: 97 PESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLAC 142
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 79 METPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
+ +P+HEA R G + V + ++ +K++ + LY+ACE + K+LL S
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLE-SGA 158
Query: 139 LILEVDGLTTSLHVSA 154
+ + G + LH A
Sbjct: 159 DVNQGKGQDSPLHAVA 174
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 81/216 (37%), Gaps = 45/216 (20%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGH-TPLHLSCSKGHLEITREXXXXXXXX 206
+ +H +A+ GH ++ L+ Q +A H +PLH +C GHL +
Sbjct: 5 SPMHEAAIHGHQLSLRNLIS--QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 207 XXXXXN-------------------------------EGRTPLHWAAIKGRINIIDEILS 235
+ + +P+H AA +G + ++ +++
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIA 122
Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET---LNITKLANMPDNDGNTILHLAT 292
+ + + H T L+L +N Q VK L+E+ +N K + P LH
Sbjct: 123 YG-GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSP-------LHAVA 174
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDA 328
+ L+ G D A N +G +++V ++
Sbjct: 175 RTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A D +G TPLHL+ GHLEI E N
Sbjct: 21 AARAGQDDEVR-ILMANGADVNALDEDGLTPLHLAAQLGHLEIV-EVLLKYGADVNAEDN 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH AAI+G + I+ E+L + + G+T +++ N E + +++ LN
Sbjct: 79 FGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
L EA R G+ + V++ + + + + L+ D + L++A + G L++ + LL Y + + E
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ T LH++A+ GHL+IV+ LL+ + +D G T +S G+ ++
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 231 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
DE+ L A++ + G T LHL + E V+ L L N DN G T L
Sbjct: 28 DEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVL---LKYGADVNAEDNFGITPL 84
Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
HLA +V LLK G DVNA ++ G TA D+
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A+ GH E+ +LK ++ A +N + TPL
Sbjct: 26 QDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI-TPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
H A G L V++ + G D + K + + ++ + G D+A+ L
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVNAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
G T LHL + E V+ L++ N DNDG+T LHLA +V LLK G
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKH---GADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 308 VDVNAINRKGYTALDVVESDASNSGALQIVPAL 340
DVNA ++ G TA D + D N +I+ L
Sbjct: 104 ADVNAQDKFGKTAFD-ISIDNGNEDLAEILQKL 135
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 146 LTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXX 205
L L +A AG D V+ +L A D G+TPLHL+ HLEI E
Sbjct: 14 LGKKLLEAARAGQDDEVR-ILMANGADVNANDRKGNTPLHLAADYDHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
N+G TPLH AA+ G + I+ E+L + + G+T +++ N E +
Sbjct: 72 DVNAHDNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
+++ LN
Sbjct: 130 EILQKLN 136
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
L EA R G+ + V++ + + + + +R + L++A + L++ + LL + + +
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ +T LH++A+ GHL+IV+ LL+ + +D G T +S G+ ++
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDP 103
NT LHL A + H E+ +LK ++ A +N+ TPLH A G L V++ + G D
Sbjct: 48 NTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG-STPLHLAALFGHLEIVEVLLKHGADV 106
Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQL 132
+ K + + ++ + G D+A+ L
Sbjct: 107 NAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 231 DEILSLNLQSAEMR--TIHGETVLHLTVKNNQYEAVKYLMET-LNITKLANMPDNDGNTI 287
+E+L L + A++ + G T LH ++ + VK+L+E NI N PDN+G
Sbjct: 54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQPDNEGWIP 109
Query: 288 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
LH A + + YL+ G V A+N +G T LD+
Sbjct: 110 LHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 112 DNESVLYVACERGRLDVAKQLLNY-SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQ 170
D+ +V AC G + +LL + + VDGLT +LH + + ++D+VK L+E
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLT-ALHQACIDDNVDMVKFLVENGA 97
Query: 171 EFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINII 230
+ D G PLH + S G+L+I E +EG TPL A + ++
Sbjct: 98 NIN-QPDNEGWIPLHAAASCGYLDIA-EYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155
Query: 231 DEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 290
+N Q ++ E + Q+ ++ + + G T LH+
Sbjct: 156 QN--EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS--------GGTALHV 205
Query: 291 ATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
A A T ++ L++ DVN + G+T L
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 122 ERGRLDVAKQLLNYSSL-LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNG 180
ER L A+Q LN + + T+LHV+A G+ +++K L++AR + KD +G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN-IKDYDG 232
Query: 181 HTPLHLSCSKGHLEITR 197
TPLH + G E R
Sbjct: 233 WTPLHAAAHWGKEEACR 249
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 90/255 (35%), Gaps = 62/255 (24%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNES--VLYVACERGRLDVAKQLLNYSSL 138
T LH+AC + ++ VK V ++ DNE L+ A G LD+A+ L
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQP---DNEGWIPLHAAASCGYLDIAEYL------ 125
Query: 139 LILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHL----- 193
++ HV A+ + G TPL ++ +
Sbjct: 126 -------ISQGAHVGAV---------------------NSEGDTPLDIAEEEAMEELLQN 157
Query: 194 EITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLH 253
E+ R+ R W G IN + S G T LH
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLN-SGHINDVRHAKS------------GGTALH 204
Query: 254 LTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATA-GKLTTMVIYLLKLGVDVNA 312
+ E +K L++ N+ D DG T LH A GK I + L D+ A
Sbjct: 205 VAAAKGYTEVLKLLIQA---RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL-CDMEA 260
Query: 313 INRKGYTALDVVESD 327
+N+ G TA DV + D
Sbjct: 261 VNKVGQTAFDVADED 275
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEA 168
N + + L A + G ++ K+L S+ +++G +T LH +A + +V+ LL+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ KD G PLH +CS GH E+ E TPLH AA KG+
Sbjct: 67 GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 229 IIDEIL 234
I +L
Sbjct: 125 ICKLLL 130
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 213 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 41 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 100 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 76 NEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNY 135
N + + L EA + G + VK + + + L+ A R+ V + LL +
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 136 SSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ + + G LH + GH + V ELL DL TPLH + +KG EI
Sbjct: 67 GADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 125
Query: 196 TR 197
+
Sbjct: 126 CK 127
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVI 106
LH +GH E+A ++K + A+ K TPLHEA +G+ KL + G DP+
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQHGADPT-- 137
Query: 107 YKLNRDNESVL 117
K NRD + L
Sbjct: 138 -KKNRDGNTPL 147
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILK 66
N +R L E GD + L + + G +T LH A + + +L+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 67 LCPEMVAAENEKMETPLHEACREGRLNFVKLFVG----IDPSVIYKLNRDNESVLYVACE 122
+ V A+++ PLH AC G +L V ++ + ++K + L+ A
Sbjct: 66 HGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-----TPLHEAAA 119
Query: 123 RGRLDVAKQLLNYSS 137
+G+ ++ K LL + +
Sbjct: 120 KGKYEICKLLLQHGA 134
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A +
Sbjct: 19 KAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 74
Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
+ G L +A + G ++ L + GA
Sbjct: 75 KGGLVPL----HNACSYGHYEVAELLVKHGA 101
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEA 168
N + + L A + G ++ K+L S+ +++G +T LH +A + +V+ LL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ KD G PLH +CS GH E+ E TPLH AA KG+
Sbjct: 65 GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 229 IIDEIL 234
I +L
Sbjct: 123 ICKLLL 128
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 213 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 39 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 98 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Query: 73 AAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
A N + + L EA + G + VK + + + L+ A R+ V + L
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 133 LNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGH 192
L + + + + G LH + GH + V ELL DL TPLH + +KG
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 193 LEITR 197
EI +
Sbjct: 121 YEICK 125
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVI 106
LH +GH E+A ++K + A+ K TPLHEA +G+ KL + G DP+
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQHGADPT-- 135
Query: 107 YKLNRDNESVL 117
K NRD + L
Sbjct: 136 -KKNRDGNTPL 145
Score = 33.9 bits (76), Expect = 0.26, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 11/135 (8%)
Query: 7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILK 66
N +R L E GD + L + + G +T LH A + + +L+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 67 LCPEMVAAENEKMETPLHEACREGRLNFVKLFVG----IDPSVIYKLNRDNESVLYVACE 122
+ V A+++ PLH AC G +L V ++ + ++K + L+ A
Sbjct: 64 HGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF-----TPLHEAAA 117
Query: 123 RGRLDVAKQLLNYSS 137
+G+ ++ K LL + +
Sbjct: 118 KGKYEICKLLLQHGA 132
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A +
Sbjct: 17 KAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 72
Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
+ G L +A + G ++ L + GA
Sbjct: 73 KGGLVPL----HNACSYGHYEVAELLVKHGA 99
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDG-LTTSLHVSAMAGHLDIVKELLEA 168
N + + L A + G ++ K+L S+ +++G +T LH +A + +V+ LL+
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ KD G PLH +CS GH E+ E TPLH AA KG+
Sbjct: 69 GADVH-AKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 229 IIDEIL 234
I +L
Sbjct: 127 ICKLLL 132
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 213 EGR--TPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMET 270
EGR TPLH+AA R+++++ +L + + G LH YE + L++
Sbjct: 43 EGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 271 LNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVE 325
+ +A++ T LH A A + LL+ G D NR G T LD+V+
Sbjct: 102 GAVVNVADLWKF---TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVI 106
LH +GH E+A ++K + A+ K TPLHEA +G+ KL + G DP+
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKF-TPLHEAAAKGKYEICKLLLQHGADPT-- 139
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLL 139
K NRD + L + + G D+ L ++LL
Sbjct: 140 -KKNRDGNTPLDLV-KDGDTDIQDLLRGDAALL 170
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 1/126 (0%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
++ N + + L EA + G + VK + + + L+ A R+ V +
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 132 LLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKG 191
LL + + + + G LH + GH + V ELL DL TPLH + +KG
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 192 HLEITR 197
EI +
Sbjct: 124 KYEICK 129
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 257 KNNQYEAVKYLMETLNITKLANMPDNDG--NTILHLATAGKLTTMVIYLLKLGVDVNAIN 314
K E VK L ++ N D +G +T LH A ++V YLL+ G DV+A +
Sbjct: 21 KAGDVETVKKLCTVQSV----NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD 76
Query: 315 RKGYTALDVVESDASNSGALQIVPALEEAGA 345
+ G L +A + G ++ L + GA
Sbjct: 77 KGGLVPL----HNACSYGHYEVAELLVKHGA 103
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
+T LH++A + IV+ LL+ + KD G PLH +CS GH E+T E
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVT-ELLLKHGAC 116
Query: 207 XXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
TPLH AA K R+ + +LS + HG++ + + E + Y
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTY 175
Query: 267 LMETLNITKLANMPD------------------NDGNTILHLATAG---KLTTMVIYLLK 305
+ ++ + A D T LH A A K + LL+
Sbjct: 176 EFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR 235
Query: 306 LGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEAGAR 346
G +VN N+ T L V A N ++ L + GA+
Sbjct: 236 KGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAK 272
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELL 166
N+D + L+VA ER DV + L + + + +D L T+LH +A+AGHL + LL
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMN-ALDSLGQTALHRAALAGHLQTCRLLL 300
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACER---GRLDVAKQLLNYSSLLIL 141
+A RE L VK + ++ + +K + +E+ L+ A R VA+ LL + +
Sbjct: 184 QAAREADLAKVKKTLALE-IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE 242
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
+ T LHV+A H D++ E+L D G T LH + GHL+ R
Sbjct: 243 KNKDFMTPLHVAAERAHNDVM-EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 112/274 (40%), Gaps = 24/274 (8%)
Query: 52 TARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKL 109
AR G+EE +L A + + TPLH A R+ V+L + G D ++
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD---VHAK 87
Query: 110 NRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEAR 169
++ L+ AC G +V + LL + + + T LH +A +++ LL
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS-- 145
Query: 170 QEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINI 229
+G P ++C H + + L AA + +
Sbjct: 146 ---------HGADPTLVNC---HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAK 193
Query: 230 IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGN--TI 287
+ + L+L + + + H ET LH V + + K + E L + K AN+ + + + T
Sbjct: 194 VKKTLALEIINFKQPQSH-ETALHCAVA-SLHPKRKQVAELL-LRKGANVNEKNKDFMTP 250
Query: 288 LHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
LH+A ++ L K G +NA++ G TAL
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
D T LH++A GHL+IV+ LL+ + +D+ G TPLHL+ + GHLEI
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEI 95
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 72 DVNARDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
+++ LN
Sbjct: 130 EILQKLN 136
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 231 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
DE+ L A++ + G T LHL K E V+ L++ N D G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNARDIWGRTPL 84
Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
HLA +V LL+ G DVNA ++ G TA D+
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILE 142
L EA R G+ + V++ + + + + ++ + L++A +RG L++ + LL + + +
Sbjct: 18 LLEATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 143 VDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++A GHL+IV+ LLE + +D G T +S G+ ++
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A+ GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
H A G L V++ + G D + K + + ++ + G D+A+ L
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
+ GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 72 DVNASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
+++ LN
Sbjct: 130 EILQKLN 136
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 231 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
DE+ L A++ + G T LHL K E V+ L++ N D+ G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNASDSWGRTPL 84
Query: 289 HLA-TAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
HLA T G L +V LL+ G DVNA ++ G TA D+
Sbjct: 85 HLAATVGHLE-IVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD 144
EA R G+ + V++ + + + + ++ + L++A +RG L++ + LL + + +
Sbjct: 20 EATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDS 78
Query: 145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
T LH++A GHL+IV+ LLE + +D G T +S G+ ++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDLAE 130
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A+ GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
H A G L V++ + G D + K + + ++ + G D+A+ L
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 172 FAWKKDLNGHTPLHLSCSKGHLEITREXX---XXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
A + D +G TPLH++ +G+L N +TPLH A I +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 229 IIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN-DGNTI 287
++ +++ + HG+T HL ++ ++ L+++ L N DG T
Sbjct: 61 VVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 288 LHLATAGKLTTMVIYLLKLGVDVNAINRK 316
LH+A + V LL+ G D++A++ K
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIK 148
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ L+ F D G +PLHL+ GH T E
Sbjct: 9 AARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTT-EVLLRAGVSRDARTK 65
Query: 213 EGRTPLHWAAIKGRINIIDEIL--SLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
RTPLH AA +G NI++ +L ++ + +M + T LH ++N E V+ L++
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---TALHWATEHNHQEVVELLIK 121
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 49 LHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVI 106
LHL A++GH +E+L A + TPLH A EG N V++ + G D +
Sbjct: 38 LHLAAQYGHFS-TTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK 96
Query: 107 YKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVK 163
L + L+ A E +V + L+ Y + + + T+ +S G+ D+ +
Sbjct: 97 DMLKM---TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXX 206
T+ LH++A GH + LL A + ++ TPLH++ S+GH I E
Sbjct: 35 TSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIV-EVLLKHGAD 92
Query: 207 XXXXXNEGRTPLHWA 221
T LHWA
Sbjct: 93 VNAKDMLKMTALHWA 107
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD 144
EA R G+ + V++ + + + S L++A + G + LL
Sbjct: 8 EAARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++A GH +IV+ LL+ + KD+ T LH + H E+
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEV 115
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 160 DIVKELLEA---------RQEFAWKKDLN-----GHTPLHLSCSKGHLEITREXXXXXXX 205
D+ K+LLEA R A D+N G TPLHL+ +GHLEI E
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIV-EVLLKHGA 71
Query: 206 XXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVK 265
GRTPLH AA G + I++ +L + G+T +++ N E +
Sbjct: 72 DVNASDIWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGKTAFDISIDNGN-EDLA 129
Query: 266 YLMETLN 272
+++ LN
Sbjct: 130 EILQKLN 136
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 144 DGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
D T LH++A GHL+IV+ LL+ + D+ G TPLHL+ + GHLEI
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEI 95
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 231 DEILSLNLQSAEMRTIH--GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTIL 288
DE+ L A++ + G T LHL K E V+ L++ N D G T L
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---GADVNASDIWGRTPL 84
Query: 289 HLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
HLA +V LL+ G DVNA ++ G TA D+
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 85 EACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVD 144
EA R G+ + V++ + + + + ++ + L++A +RG L++ + LL + + +
Sbjct: 20 EATRAGQDDEVRILMA-NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDI 78
Query: 145 GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
T LH++A GHL+IV+ LLE + +D G T +S G+ ++
Sbjct: 79 WGRTPLHLAATVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGNEDLAE 130
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 13/111 (11%)
Query: 31 QQDEAKIKQTVPGSLN-------TILHLTARFGHEELASEILKLCPEMVAAENEKMETPL 83
Q DE +I +N T LHL A+ GH E+ +LK + V A + TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPL 84
Query: 84 HEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQL 132
H A G L V++ + G D + K + + ++ + G D+A+ L
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVNAQDKFGK---TAFDISIDNGNEDLAEIL 132
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
++P+++G T LH A T +V +L++ GV+VNA + G+T L A++ +Q+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 338 PALEEAGA 345
L E+GA
Sbjct: 120 KFLVESGA 127
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
G D+ ++++ L D T+LH + AGH +IVK L++ D +G T
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWT 105
Query: 183 PLHLSCSKGHLEITR 197
PLH + S ++++ +
Sbjct: 106 PLHCAASCNNVQVCK 120
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANM 279
++++G +++ I+ + + G T LH V E VK+L++ +N+ N
Sbjct: 44 SSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NA 98
Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY-TALDVVE 325
D+DG T LH A + + +L++ G V A+ TA D E
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
++P+++G T LH A T +V +L++ GV+VNA + G+T L A++ +Q+
Sbjct: 64 SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHC----AASCNNVQVC 119
Query: 338 PALEEAGA 345
L E+GA
Sbjct: 120 KFLVESGA 127
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 123 RGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
G D+ ++++ L D T+LH + AGH +IVK L++ D +G T
Sbjct: 47 EGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWT 105
Query: 183 PLHLSCSKGHLEITR 197
PLH + S ++++ +
Sbjct: 106 PLHCAASCNNVQVCK 120
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANM 279
++++G +++ I+ + + G T LH V E VK+L++ +N+ N
Sbjct: 44 SSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NA 98
Query: 280 PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGY-TALDVVE 325
D+DG T LH A + + +L++ G V A+ TA D E
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 145
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXX 207
T LH++++ G + V+ LL+ + KD G TPLH +C+ GHL++ E
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVV-ELLLQHKALV 69
Query: 208 XXXXNEGRTPLHWAAIKGRINIIDEILS 235
+ +PLH AA G ++I+ +LS
Sbjct: 70 NTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 81 TPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSS 137
TPLHEAC G L V+L + +++ N+S L+ A + G +D+ K LL+Y +
Sbjct: 45 TPLHEACNHGHLKVVELLLQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 6/132 (4%)
Query: 214 GRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNI 273
G T LH A+IKG I ++ +L N ++ G T LH + + V+ L++
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH--- 65
Query: 274 TKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGA 333
L N ++ LH A +V LL G NA+N G +D + ++ S
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKS-- 123
Query: 334 LQIVPALEEAGA 345
L ++P E+ +
Sbjct: 124 LLLLPEKNESSS 135
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 5 AINPYMERHLFETIL-----RGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEE 59
I+P+ H ET+L +GD + L+Q + G T LH GH +
Sbjct: 1 GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW--TPLHEACNHGHLK 57
Query: 60 LASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV 99
+ E+L +V + ++PLH+A + G ++ VKL +
Sbjct: 58 VV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Query: 98 FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG 157
F+ S+ + +R E+ L++A R D AK+LL S+ ++ + T LH + A
Sbjct: 7 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSAD 66
Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 217
+ + LL R + +G TPL L+ LE E + G++
Sbjct: 67 AQGVFQILLRNRATDLDARMHDGTTPLILAARLA-LEGMLEDLINSHADVNAVDDLGKSA 125
Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
LHWAA ++ +L N + +M+ ET L L + YE K L++
Sbjct: 126 LHWAAAVNNVDAAVVLLK-NGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 51 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 106
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 107 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 157
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 35 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 90
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
G T LHL N+ E V+ L++ N D G T LHL +V LLK G
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLLKN---GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 308 VDVNAINRKGYTALDV 323
DVNA ++ G TA D+
Sbjct: 104 ADVNAQDKFGKTAFDI 119
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++AM HL+IV+ LL+ + D G TPLHL GHLEI
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEI 95
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A +D G TPLHL+ HLEI E
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH A+ G + I+ E+L + + G+T +++ N E + +++ LN
Sbjct: 79 IGETPLHLVAMYGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGN-EDLAEILQKLN 136
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T LHLA +V LLK G DVNAI+ G T L +V + G L+IV
Sbjct: 41 NAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLV----AMYGHLEIV 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL-NYSSLLIL 141
L EA R G+ + V++ + + + + ++ + L++A L++ + LL N + + +
Sbjct: 18 LLEAARAGQDDEVRILMA-NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ G T LH+ AM GHL+IV+ LL+ + +D G T +S G+ ++
Sbjct: 77 DAIG-ETPLHLVAMYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Query: 98 FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG 157
F+ S+ + +R E+ L++A R D AK+LL S+ ++ + T LH + A
Sbjct: 43 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 102
Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 217
+ + L+ R + +G TPL L+ +E E + G++
Sbjct: 103 AQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSA 161
Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
LHWAA ++ +L N + +M+ ET L L + YE K L++
Sbjct: 162 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 175 KKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 234
+ D G T LHL+ + + N GRTPLH AA+ + +IL
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLH-AAVSADAQGVFQIL 110
Query: 235 SLNLQSA-EMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITKLANMPDNDGNTILHLAT 292
N + + R G T L L + AV+ ++E L N N D+ G + LH A
Sbjct: 111 IRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSALHWAA 166
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
A + LLK G + + N + T L
Sbjct: 167 AVNNVDAAVVLLKNGANKDMQNNREETPL 195
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Query: 98 FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG 157
F+ S+ + +R E+ L++A R D AK+LL S+ ++ + T LH + A
Sbjct: 42 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 217
+ + L+ R + +G TPL L+ +E E + G++
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSA 160
Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
LHWAA ++ +L N + +M+ ET L L + YE K L++
Sbjct: 161 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 8/149 (5%)
Query: 175 KKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 234
+ D G T LHL+ + + N GRTPLH AA+ + +IL
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLH-AAVSADAQGVFQIL 109
Query: 235 SLNLQSA-EMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITKLANMPDNDGNTILHLAT 292
N + + R G T L L + AV+ ++E L N N D+ G + LH A
Sbjct: 110 IRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
A + LLK G + + N + T L
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPL 194
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
EG TPL WAA G+I ++ E L N ++ E+ L L + VK L L+
Sbjct: 33 EGFTPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML---LD 88
Query: 273 ITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D +G T L A G V LL+ G D GY ++D+
Sbjct: 89 CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 139
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 26/46 (56%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
N D DG T LHLA +V LLK G DVNA ++ G TA D+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 284 GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVPALEEA 343
G +L A AG+ + I L+ G DVNA ++ GYT L + A+ G L+IV L +A
Sbjct: 3 GKKLLEAARAGQDDEVRI-LMANGADVNAKDKDGYTPLHL----AAREGHLEIVEVLLKA 57
Query: 344 GA 345
GA
Sbjct: 58 GA 59
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+A AG D V+ +L A KD +G+TPLHL+ +GHLEI
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEI 50
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 148 TSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
T LH++A GHL+IV+ LL+A + +D G T +S G+ ++
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDL 83
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 2/172 (1%)
Query: 98 FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG 157
F+ S+ + +R E+ L++A R D AK+LL S+ ++ + T LH + A
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69
Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 217
+ + L+ R + +G TPL L+ +E E + G++
Sbjct: 70 AQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSA 128
Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
LHWAA ++ +L N + +M+ ET L L + YE K L++
Sbjct: 129 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 159 LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPL 218
+D+V++LLE ++++ G TPLH + +I E G TP
Sbjct: 38 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPF 96
Query: 219 HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 278
AAI G + ++ LS E +G T + +A+K+L + L
Sbjct: 97 ILAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 279 MPDND--------GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL--DVVESDA 328
D ++ A G + + I L ++G DVNA + G AL ++ SD
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 215
Query: 329 SNSGAL 334
S+ A+
Sbjct: 216 SDVEAI 221
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 110/269 (40%), Gaps = 23/269 (8%)
Query: 59 ELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESV 116
+L ++L+ + E E TPLH A + R + V+L + G DP V+ K N +
Sbjct: 39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKN--GATP 95
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVD--GLTTSLHVSAMAGHLDIVK---------EL 165
+A G + + K L+ + + E D G T + +A+ G + +K L
Sbjct: 96 FILAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFME-AAVYGKVKALKFLYKRGANVNL 153
Query: 166 LEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKG 225
+E + G T L + KGH+E+ + N GR L A +
Sbjct: 154 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 213
Query: 226 RINIIDEILSLNLQ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN 282
+ ++ I L L +R G+T L L V+ V+ L+E +I N D+
Sbjct: 214 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDS 271
Query: 283 DGNTILHLATAGKLTTMVIYLLKLGVDVN 311
DG T L LA KL + L K G +
Sbjct: 272 DGKTALLLAVELKLKKIAELLCKRGASTD 300
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXN 212
+A AG D V+ +L A KD G TPL+L+ + GHLEI E
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDEYGLTPLYLATAHGHLEIV-EVLLKNGADVNAVDA 78
Query: 213 EGRTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLN 272
G TPLH AA G + I E+L + + G+T +++ N E + +++ LN
Sbjct: 79 IGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGNGN-EDLAEILQKLN 136
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIV 337
N D G T L+LATA +V LLK G DVNA++ G+T L + A+ G L+I
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL----AAFIGHLEIA 96
Query: 338 PALEEAGA 345
L + GA
Sbjct: 97 EVLLKHGA 104
Score = 35.4 bits (80), Expect = 0.087, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 233 ILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLAT 292
IL N + +G T L+L + E V+ L++ N D G T LHLA
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---GADVNAVDAIGFTPLHLAA 88
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
+ LLK G DVNA ++ G TA D+
Sbjct: 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 83 LHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL-NYSSLLIL 141
L EA R G+ + V++ + V K + + LY+A G L++ + LL N + + +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ G T LH++A GHL+I + LL+ + +D G T +S G+ ++
Sbjct: 77 DAIGFT-PLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDL 128
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 12/186 (6%)
Query: 159 LDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPL 218
+D+V++LLE ++++ G TPLH + +I E G TP
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV-ELLLRHGADPVLRKKNGATPF 76
Query: 219 HWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLAN 278
AAI G + ++ LS E +G T + +A+K+L + L
Sbjct: 77 LLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 279 MPDND--------GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL--DVVESDA 328
D ++ A G + + I L ++G DVNA + G AL ++ SD
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195
Query: 329 SNSGAL 334
S+ A+
Sbjct: 196 SDVEAI 201
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 102/255 (40%), Gaps = 39/255 (15%)
Query: 81 TPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSL 138
TPLH A + R + V+L + G DP V+ K N + +A G + + K L+ +
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADP-VLRKKN--GATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 139 LILEVD--GLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLN----------------- 179
+ E D G T + +A+ G + +K F +K+ N
Sbjct: 98 -VNECDFYGFTAFME-AAVYGKVKALK--------FLYKRGANVNLRRKTKEDQERLRKG 147
Query: 180 GHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQ 239
G T L + KGH+E+ + N GR L A + + ++ I L L
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 240 ---SAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKL 296
+R G+T L L V+ V+ L+E +I N D+DG T L LA KL
Sbjct: 208 HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLAVELKL 265
Query: 297 TTMVIYLLKLGVDVN 311
+ L K G +
Sbjct: 266 KKIAELLCKRGASTD 280
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D NG+T LH S S + + ++ G +P+ A+ + D+I ++
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL-ATLKTQDDIETV 166
Query: 237 NLQSAEMRTIH------GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHL 290
LQ + I+ G+T L L V + + + VK L L N+ D+DG+T L
Sbjct: 167 -LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKAL---LACEADVNVQDDDGSTALMC 222
Query: 291 ATAGKLTTMVIYLLKL-GVDVNAINRKGYTALDVVESDASNS 331
A + LL + D++ +R G TAL +V DA S
Sbjct: 223 ACEHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQS 263
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 7 NPYMERHLFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILK 66
+P M L + D + L L + K + G T L L G ++ +L
Sbjct: 147 SPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG--QTALMLAVSHGRVDVVKALLA 204
Query: 67 LCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRL 126
C V +++ T L AC G L + + I +RD + L VA + G+
Sbjct: 205 -CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS 263
Query: 127 DVAKQLLNYSSLLI 140
++A L YS + I
Sbjct: 264 EIASML--YSRMNI 275
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 108 KLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLE 167
K ++ ++ L +A GR+DV K LL + + ++ D +T+L + GH +I LL
Sbjct: 178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA 237
Query: 168 ARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
D +G T L ++ G EI
Sbjct: 238 VPSCDISLTDRDGSTALMVALDAGQSEI 265
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGV-DVNAINRKGYT 319
N+ D++GNT LH + + +V LL GV V+ NR GY+
Sbjct: 105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYS 147
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
+A AG D V+ L+ + A KD NG TPLHL+ GHLE+ +
Sbjct: 31 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVK 74
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 281 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
D +G+T LHLA +V LL+ G DV A ++ G TA D+
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+T LH++A GHL++VK LLEA + +D G T +S G+ ++
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNGNEDL 105
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQ 131
VAA+++ TPLH A R G L VKL + V + ++ ++ ++ + G D+A+
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEI 108
Query: 132 L 132
L
Sbjct: 109 L 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 153 SAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITR 197
+A AG D V+ L+ + A KD NG TPLHL+ GHLE+ +
Sbjct: 13 AARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVK 56
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 281 DNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDV 323
D +G+T LHLA +V LL+ G DVNA ++ G TA D+
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 147 TTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+T LH++A GHL++VK LLEA + +D G T +S G+ ++
Sbjct: 40 STPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFDISIDNGNEDL 87
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 72 VAAENEKMETPLHEACREGRLNFVKLFV--GIDPSVIYKLNRDNESVLYVACERGRLDVA 129
VAA+++ TPLH A R G L VKL + G D + K + + ++ + G D+A
Sbjct: 32 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGK---TAFDISIDNGNEDLA 88
Query: 130 KQL 132
+ L
Sbjct: 89 EIL 91
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 2/172 (1%)
Query: 98 FVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAG 157
F+ S+ + +R + L++A R D AK+LL S+ ++ + T LH + A
Sbjct: 42 FIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101
Query: 158 HLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTP 217
+ + L+ R + +G TPL L+ +E E + G++
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLA-VEGMLEDLINSHADVNAVDDLGKSA 160
Query: 218 LHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLME 269
LHWAA ++ +L N + +M+ ET L L + YE K L++
Sbjct: 161 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 8/149 (5%)
Query: 175 KKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 234
+ D G T LHL+ + + + N GRTPLH AA+ + +IL
Sbjct: 52 QTDRTGATALHLAAAYSRSDAAKRLLEASADANIQD-NMGRTPLH-AAVSADAQGVFQIL 109
Query: 235 SLNLQSA-EMRTIHGETVLHLTVKNNQYEAVKYLMETL-NITKLANMPDNDGNTILHLAT 292
N + + R G T L L + AV+ ++E L N N D+ G + LH A
Sbjct: 110 IRNRATDLDARMHDGTTPLILAAR----LAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 293 AGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
A + LLK G + + N + T L
Sbjct: 166 AVNNVDAAVVLLKNGANKDMQNNREETPL 194
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 276 LANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQ 335
L N D G T LHLA A + LL+ D N + G T L S A G Q
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQ 107
Query: 336 IV 337
I+
Sbjct: 108 IL 109
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 26/236 (11%)
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSS---LLILEVDGLTTSLHVSAMAGHLDI 161
V + D ++ L++A LL +S+ L L+ D T+LH++A+ G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 162 VKELLEARQEFAWKKDLNGHTPLHLSCS-KGH-----LEITREXXXXXXXXXXXXXNEGR 215
V++L A + GHT LHL+C + H L R ++
Sbjct: 61 VEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 216 TP---LHWAAIKGRINI------IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
TP AA+ + N DE L L E G T LH+ V + E V+
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL---EAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 267 LMETLNITKLANMPDND-GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
L + N P+ G T LHLA + +++ LLK G D A G T L
Sbjct: 177 LRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 18/192 (9%)
Query: 46 NTILHLTARFGHEELASEILKLCP--EMVAAENEKMETPLHEACREGRLNFVKLFVGIDP 103
+T LHL HE +L E + +N+ +T LH A G + V+
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLN---------YSSLLILEVDGLTTSLHVSA 154
V+ R + L++AC A LL + L D + H A
Sbjct: 70 GVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 155 MAGHLDIVKELLEARQEFAWK-----KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
+ E R E W+ ++ +GHTPLH++ E+ R
Sbjct: 129 AVDSQPNPENEEEPRDE-DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 210 XXNEGRTPLHWA 221
GRTPLH A
Sbjct: 188 EPTCGRTPLHLA 199
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 93/236 (39%), Gaps = 26/236 (11%)
Query: 105 VIYKLNRDNESVLYVACERGRLDVAKQLLNYSS---LLILEVDGLTTSLHVSAMAGHLDI 161
V + D ++ L++A LL +S+ L L+ D T+LH++A+ G
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 162 VKELLEARQEFAWKKDLNGHTPLHLSCS-KGH-----LEITREXXXXXXXXXXXXXNEGR 215
V++L A + GHT LHL+C + H L R ++
Sbjct: 61 VEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119
Query: 216 TP---LHWAAIKGRINI------IDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKY 266
TP AA+ + N DE L L E G T LH+ V + E V+
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL---EAENYDGHTPLHVAVIHKDAEMVRL 176
Query: 267 LMETLNITKLANMPDND-GNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTAL 321
L + N P+ G T LHLA + +++ LLK G D A G T L
Sbjct: 177 LRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL 229
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 18/192 (9%)
Query: 46 NTILHLTARFGHEELASEILKLCP--EMVAAENEKMETPLHEACREGRLNFVKLFVGIDP 103
+T LHL HE +L E + +N+ +T LH A G + V+
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 104 SVIYKLNRDNESVLYVACERGRLDVAKQLLN---------YSSLLILEVDGLTTSLHVSA 154
V+ R + L++AC A LL + L D + H A
Sbjct: 70 GVLVA-ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 155 MAGHLDIVKELLEARQEFAWK-----KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXX 209
+ E R E W+ ++ +GHTPLH++ E+ R
Sbjct: 129 AVDSQPNPENEEEPRDE-DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP 187
Query: 210 XXNEGRTPLHWA 221
GRTPLH A
Sbjct: 188 EPTCGRTPLHLA 199
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 9/147 (6%)
Query: 176 KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILS 235
+D TPL ++C G +E + EG T L WA R+ I +++LS
Sbjct: 31 RDSYNRTPLMVACMLG-MENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Query: 236 LNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDN--DGNTILHLATA 293
+ + G+T L ++ E +L+E AN+ D +G T L +A+
Sbjct: 90 KG-SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLE-----HGANVNDRNLEGETPLIVASK 143
Query: 294 GKLTTMVIYLLKLGVDVNAINRKGYTA 320
+ +V LL+LG D++A + G TA
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTA 170
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 106 IYKLNRDNESVLY-VACERGRLDVAKQLLNYSSLLILEVDGLT----------TSLHVSA 154
I +L+R+ + L VA GR VA L ++ DG T+LH +A
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 155 MAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
+ IVK L+ + K+D +G TP+ L+ +G +E+
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV 328
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLG 307
G T LH + + VKYL+ K + D DG T + LA +V YL++ G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNK--DKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 308 VDVNAINRKGYTALDVVESD 327
V A++ +TA + +++
Sbjct: 337 ASVEAVDATDHTARQLAQAN 356
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 50/143 (34%), Gaps = 46/143 (32%)
Query: 247 HGETVLHLTVKNNQYEAVKYLM-----ETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
H TVLH N+ E + L+ E + N D D NT L LA + +V
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 302 YLLKLGVD------------------------------------VNAINRKGYTALDVVE 325
YL K G D + ++R G TAL +V
Sbjct: 184 YLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIV- 242
Query: 326 SDASNSGALQIVPA--LEEAGAR 346
A N G Q+ A L E GA+
Sbjct: 243 --AHNEGRDQVASAKLLVEKGAK 263
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 215 RTPLHWAAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNIT 274
+PL AA + + + ++L R GET LH+ + EA LME
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 275 KLANMPDN--DGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
M +G T LH+A + +V LL G V+A
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 38/227 (16%)
Query: 22 DTQAFLSLIQQDEAKIKQTVPGSLN-TILHLTARFGHEELASEILKLCPEMV----AAEN 76
D QA L++ + ++ Q G++ T LH+ A + + E A +++ PE+V +E
Sbjct: 15 DVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72
Query: 77 EKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYS 136
+ +T LH A +N V+ + SV R SV + L+ Y
Sbjct: 73 YEGQTALHIAVINQNVNLVRALLARGASVS---ARATGSVFHYR--------PHNLIYYG 121
Query: 137 SLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHL---------S 187
L +A G +IV+ L+E + + L G+T LH+ +
Sbjct: 122 E----------HPLSFAACVGSEEIVRLLIEHGADIRAQDSL-GNTVLHILILQPNKTFA 170
Query: 188 CSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEIL 234
C +L ++ + N+G TP A ++G I + ++
Sbjct: 171 CQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLM 217
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 29/218 (13%)
Query: 114 ESVLYVACERGRLDVAKQLLNYSSLLILEVDGL-TTSLHVSAMAGHLDIVKELLEARQEF 172
ES L +A + + +LL + + + + T+LH++A+ +L+ L+EA E
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 173 AWK----KDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNE------------GRT 216
++ + G T LH++ ++ + R G
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 217 PLHWAAIKGRINIIDEILSLNLQSAEMRTIH--GETVLHLTV--KNNQYEAVKY-LMETL 271
PL +AA G I+ ++ A++R G TVLH+ + N + Y L+ +
Sbjct: 124 PLSFAACVGSEEIVRLLIE---HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY 180
Query: 272 N----ITKLANMPDNDGNTILHLATAGKLTTMVIYLLK 305
+ + L +P+N G T LA M +L++
Sbjct: 181 DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 184 LHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM 243
+H ++G L+ +E G TPL WA+ G I + +L +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHI 64
Query: 244 RTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
E+ L L + V L+E ++I N+ D +G T L A G V
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVRGNHVKCVEA 120
Query: 303 LLKLGVDVNAINRKGYTALDVV 324
LL G D+ GYT +D+
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 55/142 (38%), Gaps = 6/142 (4%)
Query: 184 LHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSLNLQSAEM 243
+H ++G L+ +E G TPL WA+ G I + +L +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHI 64
Query: 244 RTIHGETVLHLTVKNNQYEAVKYLME-TLNITKLANMPDNDGNTILHLATAGKLTTMVIY 302
E+ L L + V L+E ++I N+ D +G T L A G V
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDI----NIYDWNGGTPLLYAVHGNHVKCVEA 120
Query: 303 LLKLGVDVNAINRKGYTALDVV 324
LL G D+ GYT +D+
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+++ G V+H + Q + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGQLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 302 YLLK-LGVDVNAINRKGYTALDVV 324
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
L G +P + +R +V++ A G+LD + LL + + + +E + LH++A
Sbjct: 57 LLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
GHL +V+ L++ ++ G T L+ G E+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
++H AR G + +L+ ++ +NE PLH A +EG L V+ V S +
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 107 YKLNRDNESVLYVACERGRL 126
N ++ AC+ RL
Sbjct: 131 GHRNHKGDT----ACDLARL 146
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A RG L+ LL + + + T+L V + G+ +I + LL R K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLK 66
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 67 DRTGFAVIHDAARAGQLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+ R G+T L + E V +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 161 IVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHW 220
++ +LL E D G T LHL+ + N GRTPLH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFA-RADAAKRLLDAGADANSQDNTGRTPLHA 90
Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLA--N 278
A + + +L + R G T L L + A++ ++E L IT A N
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR----LAIEGMVEDL-ITADADIN 145
Query: 279 MPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVESDASNSGALQIVP 338
DN G T LH A A T V LL + +A + K T L + A+ G+ +
Sbjct: 146 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFL----AAREGSYEASK 201
Query: 339 ALEEAGARR-----CDQLP 352
AL + A R D+LP
Sbjct: 202 ALLDNFANREITDHMDRLP 220
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 19/195 (9%)
Query: 14 LFETILRGDTQAFLSLIQQDEAKIKQTVPGSLNTILHLTARFGHEELASEILKLCPEMVA 73
L E + DT+ ++Q ++ + V NT L++ E+A ++ + +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRGAD-IN 66
Query: 74 AENEKMETPLHEACREGRLNFVKLFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLL 133
+N ++P A +GR + + + K NR + L A E+G +D K LL
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 134 -----------NYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHT 182
++ ++E GL + + DIVK L+E + + KD +G T
Sbjct: 127 EDGREDIDFQNDFGYTALIEAVGLREGNQL-----YQDIVKLLMENGADQSI-KDNSGRT 180
Query: 183 PLHLSCSKGHLEITR 197
+ + KG+ EI++
Sbjct: 181 AMDYANQKGYTEISK 195
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 278 NMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAINRKGYTALDVVES 326
+ P+ +G T LH A G ++V +L+ G +VN+ + G+T L S
Sbjct: 48 SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 221 AAIKGRINIIDEILSLNLQSAEMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANM- 279
AA+ G + ++ + + + G T LH + Y V +L IT AN+
Sbjct: 28 AALTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFL-----ITAGANVN 81
Query: 280 -PDNDGNTILHLATAGKLTTMVIYLLKLGVDVNAIN-RKGYTALDVVE 325
PD+ G T LH A + T + + L++ G + A G TA + +
Sbjct: 82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
L G +P + +R +V++ A G LD + LL + + + +E + LH++A
Sbjct: 57 LLRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
GHL +V+ L++ ++ G T L+ G E+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 46 NTILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSV 105
N ++H AR G + +L+ ++ +NE PLH A +EG L V+ V S
Sbjct: 71 NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 106 IYKLNRDNESVLYVACERGRL 126
+ N ++ AC+ RL
Sbjct: 130 VGHRNHKGDT----ACDLARL 146
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGNAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 302 YLLK-LGVDVNAINRKGYTALDVV 324
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 3/151 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A RG L+ LL + + + T+L V + G+ +I + LL R K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLK 66
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G+ +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 67 DRTGNAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+ R G+T L + E V +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
LNR ++ L V G +A +LL + ++ T+ +H +A G LD +K L+E
Sbjct: 32 LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 90
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ D G P+HL+ +GH + G TPL A +G +
Sbjct: 91 GADVN-VPDGTGALPIHLAVQEGHTAVV--SFLAAESDLHRRDARGLTPLELALQRGAQD 147
Query: 229 IID 231
++D
Sbjct: 148 LVD 150
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
HL +++ + +K + + + + KL GN I H + + ++ K+GV VN
Sbjct: 29 HLGIRDIVVDVLKEVADEVKVDKL-------GNVIAHFKGSSPRIMVAAHMDKIGVMVNH 81
Query: 313 INRKGY 318
I++ GY
Sbjct: 82 IDKDGY 87
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 253 HLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGVDVNA 312
HL +++ + +K + + + + KL GN I H + + ++ K+GV VN
Sbjct: 29 HLGIRDIVVDVLKEVADEVKVDKL-------GNVIAHFKGSSPRIMVAAHMDKIGVMVNH 81
Query: 313 INRKGY 318
I++ GY
Sbjct: 82 IDKDGY 87
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
LNR ++ L V G +A +LL + ++ T+ +H +A G LD +K L+E
Sbjct: 38 LNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH 96
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ D G P+HL+ +GH + G TPL A +G +
Sbjct: 97 GADVN-VPDGTGALPIHLAVQEGHTAVV--SFLAAESDLHRRDARGLTPLELALQRGAQD 153
Query: 229 IID 231
++D
Sbjct: 154 LVD 156
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
LNR ++ L V G VA +LL + ++ T+ +H +A G LD +K L+E
Sbjct: 38 LNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 96
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ D G P+HL+ +GH + G TPL A +G N
Sbjct: 97 GADV-NALDSTGSLPIHLAIREGHSSVV--SFLAPESDLHHRDASGLTPLELARQRGAQN 153
Query: 229 IID 231
++D
Sbjct: 154 LMD 156
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%)
Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
E VLHL VK ++ + + + DGNT LH A + LLK
Sbjct: 191 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250
Query: 309 DVNAINRKGYTALDVV 324
V +N G TALD+
Sbjct: 251 LVGTVNEAGETALDIA 266
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 109 LNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEA 168
LNR ++ L V G VA +LL + ++ T+ +H +A G LD +K L+E
Sbjct: 40 LNRFGKTALQVMM-FGSPAVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEH 98
Query: 169 RQEFAWKKDLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRIN 228
+ D G P+HL+ +GH + G TPL A +G N
Sbjct: 99 GADV-NALDSTGSLPIHLAIREGHSSVV--SFLAPESDLHHRDASGLTPLELARQRGAQN 155
Query: 229 IID 231
++D
Sbjct: 156 LMD 158
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
L G +P + +R +V++ A G LD + LL + + + +E + LH++A
Sbjct: 57 LLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
GHL +V+ L++ ++ G T L+ G E+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 302 YLLK-LGVDVNAINRKGYTALDVV 324
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
++H AR G + +L+ ++ +NE PLH A +EG L V+ V S +
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 107 YKLNRDNESVLYVACERGRL 126
N ++ AC+ RL
Sbjct: 131 GHRNHKGDT----ACDLARL 146
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A RG L+ LL + + + T+L V + G+ +I + LL R K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLK 66
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 67 DRTGFAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+ R G+T L + E V +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
L G +P + +R +V++ A G LD + LL + + + +E + LH++A
Sbjct: 57 LLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE 113
Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
GHL +V+ L++ ++ G T L+ G E+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLE---FQADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 302 YLLK-LGVDVNAINRKGYTALDVV 324
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A RG L+ LL + + + T+L V + G+ +I + LL R K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLK 66
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 67 DRTGFAVIHDAARAGFLD-TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+ R G+T L + E V +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 47 TILHLTARFGHEELASEILKLCPEMVAAENEKMETPLHEACREGRLNFVKLFVGIDPSVI 106
++H AR G + +L+ ++ +NE PLH A +EG L V+ V S +
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEG-NLPLHLAAKEGHLRVVEFLVKHTASNV 130
Query: 107 YKLNRDNESVLYVACERGRL 126
N ++ AC+ RL
Sbjct: 131 GHRNHKGDT----ACDLARL 146
>pdb|3GKE|A Chain A, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|B Chain B, Crystal Structure Of Dicamba Monooxygenase
pdb|3GKE|C Chain C, Crystal Structure Of Dicamba Monooxygenase
pdb|3GB4|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GB4|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dicamba
pdb|3GOB|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GOB|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Cobalt And Dcsa
pdb|3GTE|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTE|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron
pdb|3GTS|A Chain A, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|B Chain B, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GTS|C Chain C, Crystal Structure Of Dicamba Monooxygenase With Non-Heme
Iron And Dicamba
pdb|3GL0|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL0|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To 3,6
Dichlorosalicylic Acid (Dcsa)
pdb|3GL2|A Chain A, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|B Chain B, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
pdb|3GL2|C Chain C, Crystal Structure Of Dicamba Monooxygenase Bound To
Dicamba
Length = 349
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 142 EVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEITRE 198
E+DG+ S A+ +V E +E R+ + + NG P LSC + + ++RE
Sbjct: 277 EMDGVLRSWQAQALVKEDKVVVEAIERRRAYV---EANGIRPAMLSCDEAAVRVSRE 330
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%)
Query: 249 ETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVIYLLKLGV 308
E VLHL VK ++ + + + DGNT LH A + LLK
Sbjct: 172 ELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA 231
Query: 309 DVNAINRKGYTALDVV 324
V +N G TALD+
Sbjct: 232 LVGTVNEAGETALDIA 247
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 242 EMRTIHGETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILHLATAGKLTTMVI 301
+++ G V+H + + ++ L+E N+ DN+GN LHLA +V
Sbjct: 64 DLKDRTGFAVIHDAARAGFLDTLQTLLEN---QADVNIEDNEGNLPLHLAAKEGHLRVVE 120
Query: 302 YLLK-LGVDVNAINRKGYTALDVV 324
+L+K +V N KG TA D+
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
Query: 117 LYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMAGHLDIVKELLEARQEFAWKK 176
L A RG L+ LL + + + T+L V + G+ +I + LL R K
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLK 66
Query: 177 DLNGHTPLHLSCSKGHLEITREXXXXXXXXXXXXXNEGRTPLHWAAIKGRINIIDEILSL 236
D G +H + G L+ T + NEG PLH AA +G + +++ ++
Sbjct: 67 DRTGFAVIHDAARAGFLD-TLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
Query: 237 NLQSAEMRTIHGETVLHLTVKNNQYEAVKYL 267
+ R G+T L + E V +
Sbjct: 126 TASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 97 LFVGIDPSVIYKLNRDNESVLYVACERGRLDVAKQLLNYSSLLILEVDGLTTSLHVSAMA 156
L G +P + +R +V++ A G LD + LL + + +E + LH++A
Sbjct: 57 LLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKE 113
Query: 157 GHLDIVKELLEARQEFAWKKDLNGHTPLHLSCSKGHLEI 195
GHL +V+ L++ ++ G T L+ G E+
Sbjct: 114 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 248 GETVLHLTVKNNQYEAVKYLMETLNITKLANMPDNDGNTILH 289
GE L L Q++ V YL+E + D+ GNT+LH
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,934,996
Number of Sequences: 62578
Number of extensions: 545760
Number of successful extensions: 2289
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1323
Number of HSP's gapped (non-prelim): 492
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)