Query 007516
Match_columns 600
No_of_seqs 364 out of 2769
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 11:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.9 1.3E-22 2.7E-27 211.5 5.2 271 305-597 145-421 (483)
2 KOG4341 F-box protein containi 99.9 3E-22 6.4E-27 208.8 6.9 271 305-598 171-447 (483)
3 KOG1947 Leucine rich repeat pr 99.6 3.7E-15 8E-20 163.3 10.5 230 360-595 187-445 (482)
4 KOG2120 SCF ubiquitin ligase, 99.6 1.9E-15 4.1E-20 152.3 6.3 207 360-582 184-391 (419)
5 cd00116 LRR_RI Leucine-rich re 99.6 4E-13 8.7E-18 139.8 21.7 225 360-597 50-297 (319)
6 KOG2120 SCF ubiquitin ligase, 99.5 2.3E-14 5E-19 144.6 9.1 193 389-595 185-379 (419)
7 cd00116 LRR_RI Leucine-rich re 99.5 6.4E-13 1.4E-17 138.3 19.3 221 360-590 80-319 (319)
8 KOG1947 Leucine rich repeat pr 99.5 1.6E-13 3.5E-18 150.3 11.9 226 363-598 163-422 (482)
9 KOG3207 Beta-tubulin folding c 99.1 3.5E-11 7.6E-16 127.2 1.2 189 388-592 120-315 (505)
10 PLN03210 Resistant to P. syrin 99.0 7.1E-10 1.5E-14 135.5 9.4 108 473-588 778-903 (1153)
11 KOG1909 Ran GTPase-activating 99.0 3.5E-09 7.7E-14 109.6 12.9 199 389-596 92-318 (382)
12 PLN00113 leucine-rich repeat r 99.0 1.8E-09 3.9E-14 129.7 11.4 209 359-594 116-324 (968)
13 PLN00113 leucine-rich repeat r 99.0 1.4E-09 3.1E-14 130.6 10.0 109 475-592 262-370 (968)
14 KOG1909 Ran GTPase-activating 98.9 4.2E-09 9E-14 109.1 10.8 209 359-578 90-325 (382)
15 KOG3207 Beta-tubulin folding c 98.9 4E-10 8.6E-15 119.3 1.4 212 363-592 123-340 (505)
16 KOG3665 ZYG-1-like serine/thre 98.8 4.1E-08 8.9E-13 113.2 13.8 267 308-588 2-285 (699)
17 PLN03210 Resistant to P. syrin 98.7 4.4E-08 9.5E-13 119.9 9.1 85 388-486 633-717 (1153)
18 KOG4194 Membrane glycoprotein 98.5 2.7E-08 5.7E-13 108.7 0.9 207 361-592 125-355 (873)
19 KOG3665 ZYG-1-like serine/thre 98.4 5.2E-07 1.1E-11 104.2 9.1 159 389-561 122-284 (699)
20 KOG0444 Cytoskeletal regulator 98.4 3.6E-08 7.8E-13 108.1 -2.2 198 362-589 174-373 (1255)
21 KOG4194 Membrane glycoprotein 98.2 2.9E-07 6.3E-12 100.8 1.3 210 358-592 75-331 (873)
22 PF14580 LRR_9: Leucine-rich r 98.2 8.2E-07 1.8E-11 85.8 3.9 129 390-534 20-148 (175)
23 COG5238 RNA1 Ran GTPase-activa 98.2 2.5E-05 5.5E-10 79.1 13.7 232 359-597 28-291 (388)
24 PRK15387 E3 ubiquitin-protein 98.1 2.9E-06 6.3E-11 98.8 5.5 83 500-598 383-465 (788)
25 KOG0444 Cytoskeletal regulator 98.1 5.3E-07 1.2E-11 99.2 -1.5 136 445-596 172-309 (1255)
26 PRK15370 E3 ubiquitin-protein 98.0 7E-06 1.5E-10 95.8 6.3 108 473-597 325-434 (754)
27 KOG2982 Uncharacterized conser 97.9 1.2E-05 2.6E-10 82.2 5.3 212 365-593 49-264 (418)
28 PF14580 LRR_9: Leucine-rich r 97.8 8.1E-06 1.7E-10 78.9 2.6 131 417-561 16-149 (175)
29 KOG2982 Uncharacterized conser 97.8 1E-05 2.3E-10 82.7 1.9 188 390-592 46-238 (418)
30 KOG3864 Uncharacterized conser 97.7 1.8E-05 4E-10 77.0 2.9 105 474-582 102-208 (221)
31 COG5238 RNA1 Ran GTPase-activa 97.7 0.00054 1.2E-08 69.6 13.4 200 389-597 30-261 (388)
32 KOG0618 Serine/threonine phosp 97.7 9.8E-06 2.1E-10 93.2 1.1 127 448-589 361-487 (1081)
33 PRK15387 E3 ubiquitin-protein 97.7 4.6E-05 9.9E-10 89.0 6.4 73 360-457 241-313 (788)
34 KOG3864 Uncharacterized conser 97.7 4.2E-05 9.1E-10 74.5 4.9 89 448-541 103-191 (221)
35 KOG0618 Serine/threonine phosp 97.5 2.5E-05 5.4E-10 90.0 0.9 161 419-598 358-520 (1081)
36 PRK15370 E3 ubiquitin-protein 97.5 0.00017 3.6E-09 84.4 7.3 182 361-591 220-401 (754)
37 KOG4308 LRR-containing protein 97.5 3.3E-05 7.2E-10 85.8 1.2 198 391-596 89-308 (478)
38 PRK15386 type III secretion pr 97.4 0.00012 2.6E-09 79.3 4.7 134 361-535 52-186 (426)
39 PRK15386 type III secretion pr 97.0 0.00078 1.7E-08 73.1 5.5 169 385-599 50-222 (426)
40 KOG1259 Nischarin, modulator o 96.9 0.00068 1.5E-08 69.7 3.5 126 446-592 284-413 (490)
41 KOG1859 Leucine-rich repeat pr 96.8 0.00018 4E-09 81.1 -1.8 28 355-382 103-130 (1096)
42 KOG4308 LRR-containing protein 96.7 0.00039 8.5E-09 77.4 0.2 171 422-598 89-282 (478)
43 KOG1259 Nischarin, modulator o 96.7 0.00048 1E-08 70.8 0.8 182 359-563 212-410 (490)
44 smart00367 LRR_CC Leucine-rich 96.7 0.0017 3.7E-08 42.4 2.9 25 551-575 1-25 (26)
45 KOG4658 Apoptotic ATPase [Sign 96.5 0.0041 8.8E-08 74.2 6.6 21 576-596 715-735 (889)
46 KOG4658 Apoptotic ATPase [Sign 96.5 0.0015 3.2E-08 77.9 2.7 105 389-506 571-675 (889)
47 KOG2739 Leucine-rich acidic nu 96.4 0.0005 1.1E-08 69.5 -1.4 38 419-456 64-101 (260)
48 KOG4237 Extracellular matrix p 96.3 0.0021 4.6E-08 68.4 2.1 89 495-590 270-358 (498)
49 PF13855 LRR_8: Leucine rich r 96.2 0.00076 1.7E-08 53.1 -1.4 61 526-590 1-61 (61)
50 KOG0472 Leucine-rich repeat pr 96.0 0.017 3.6E-07 62.0 7.4 94 492-592 428-542 (565)
51 KOG4237 Extracellular matrix p 96.0 0.0022 4.7E-08 68.3 0.9 82 361-456 67-150 (498)
52 smart00367 LRR_CC Leucine-rich 95.9 0.0072 1.6E-07 39.4 2.6 25 525-549 1-25 (26)
53 KOG1859 Leucine-rich repeat pr 95.7 0.0022 4.9E-08 72.7 -0.9 174 388-591 108-292 (1096)
54 PF12799 LRR_4: Leucine Rich r 95.4 0.02 4.3E-07 42.4 3.5 38 552-592 1-38 (44)
55 COG4886 Leucine-rich repeat (L 95.3 0.014 3.1E-07 63.1 3.6 38 550-591 253-290 (394)
56 KOG2739 Leucine-rich acidic nu 95.2 0.0026 5.6E-08 64.4 -2.1 105 474-586 44-151 (260)
57 PLN03150 hypothetical protein; 95.1 0.047 1E-06 63.2 7.3 58 474-536 443-500 (623)
58 PF13855 LRR_8: Leucine rich r 94.8 0.0042 9E-08 48.9 -1.5 38 417-456 22-59 (61)
59 KOG0617 Ras suppressor protein 94.3 0.00068 1.5E-08 64.8 -8.4 149 389-561 33-182 (264)
60 PLN03150 hypothetical protein; 93.7 0.12 2.5E-06 60.0 6.5 106 391-510 420-526 (623)
61 KOG2123 Uncharacterized conser 93.7 0.024 5.1E-07 58.3 0.8 112 446-572 19-134 (388)
62 COG4886 Leucine-rich repeat (L 93.4 0.05 1.1E-06 58.8 2.8 146 390-561 141-286 (394)
63 KOG2123 Uncharacterized conser 93.4 0.022 4.7E-07 58.5 -0.1 78 364-457 22-99 (388)
64 KOG1644 U2-associated snRNP A' 93.2 0.048 1E-06 53.7 2.0 106 446-561 42-149 (233)
65 KOG0531 Protein phosphatase 1, 93.0 0.015 3.3E-07 63.7 -2.1 102 388-510 94-197 (414)
66 KOG0617 Ras suppressor protein 92.4 0.0036 7.8E-08 60.0 -6.9 125 389-536 56-183 (264)
67 PF13516 LRR_6: Leucine Rich r 92.0 0.037 7.9E-07 35.2 -0.4 21 578-598 2-22 (24)
68 PF12799 LRR_4: Leucine Rich r 92.0 0.18 3.9E-06 37.3 3.2 34 474-510 2-35 (44)
69 KOG1644 U2-associated snRNP A' 91.2 0.15 3.3E-06 50.2 2.7 108 389-510 42-151 (233)
70 PF13516 LRR_6: Leucine Rich r 91.2 0.13 2.8E-06 32.7 1.5 23 551-574 1-23 (24)
71 KOG0531 Protein phosphatase 1, 90.9 0.029 6.2E-07 61.5 -2.9 81 388-484 117-197 (414)
72 KOG0472 Leucine-rich repeat pr 86.0 0.39 8.6E-06 51.8 1.7 110 413-537 428-539 (565)
73 KOG4579 Leucine-rich repeat (L 77.7 1.5 3.3E-05 41.0 2.1 36 445-484 76-111 (177)
74 smart00368 LRR_RI Leucine rich 76.6 1.3 2.9E-05 29.3 1.1 19 579-597 3-21 (28)
75 smart00368 LRR_RI Leucine rich 75.1 3.4 7.3E-05 27.3 2.7 22 553-575 3-24 (28)
76 KOG0532 Leucine-rich repeat (L 73.0 0.77 1.7E-05 51.6 -1.3 155 415-589 116-271 (722)
77 PF13504 LRR_7: Leucine rich r 72.4 2.5 5.5E-05 24.7 1.4 14 578-591 1-14 (17)
78 KOG4579 Leucine-rich repeat (L 68.4 2.4 5.3E-05 39.7 1.1 108 474-590 28-135 (177)
79 KOG3763 mRNA export factor TAP 65.8 9.3 0.0002 43.1 5.1 94 409-505 207-307 (585)
80 KOG3763 mRNA export factor TAP 63.7 11 0.00024 42.5 5.3 91 379-479 210-307 (585)
81 PF00560 LRR_1: Leucine Rich R 62.4 3.6 7.8E-05 25.5 0.7 13 579-591 1-13 (22)
82 PF07723 LRR_2: Leucine Rich R 36.8 26 0.00056 22.9 1.7 25 554-578 2-26 (26)
83 smart00369 LRR_TYP Leucine-ric 32.5 33 0.00072 21.7 1.7 16 578-593 2-17 (26)
84 smart00370 LRR Leucine-rich re 32.5 33 0.00072 21.7 1.7 16 578-593 2-17 (26)
85 PRK13042 superantigen-like pro 29.9 73 0.0016 33.1 4.4 45 10-55 46-94 (291)
86 cd03742 SOCS_Rab40 SOCS (suppr 29.0 66 0.0014 23.9 2.9 34 307-341 2-37 (43)
87 cd03735 SOCS_SOCS1 SOCS (suppr 26.4 1.2E+02 0.0026 22.5 3.8 34 307-341 2-37 (43)
88 KOG3735 Tropomodulin and leiom 25.2 1.5E+02 0.0033 31.7 5.9 99 459-561 185-292 (353)
89 KOG0532 Leucine-rich repeat (L 23.7 22 0.00047 40.6 -0.7 102 390-510 144-245 (722)
90 cd03737 SOCS_SOCS3 SOCS (suppr 23.1 1.2E+02 0.0027 22.3 3.4 32 307-338 2-33 (42)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=1.3e-22 Score=211.55 Aligned_cols=271 Identities=20% Similarity=0.284 Sum_probs=217.3
Q ss_pred cccCCchhhhhHHHHHhcCCCCCCCCCCcHHHHHHHHHHhccCCCCChhHHhhhh--CCCCcEEEecCCCCCCHHHHHHH
Q 007516 305 KLIIPSLKELSMKILVQNADAITSLEHVPDALRHKLSFMLCDSRQMNSHFLNLLF--SGSPTEIRLRDCSWLTEQEFTKA 382 (600)
Q Consensus 305 ~~~~psL~dLcL~~l~~n~~~l~sL~~Lp~~~~~kL~~~L~~~~~Lt~~~l~l~~--~~~L~~L~L~~C~~Ltd~~L~~L 382 (600)
-+++....+-.+..++.+|++|+.| .+.+|.++++..+..+. ...+++|++..|+.+|+..++.+
T Consensus 145 lrG~r~v~~sslrt~~~~CpnIehL-------------~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 145 LRGCRAVGDSSLRTFASNCPNIEHL-------------ALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccCCcchhhHHhhhCCchhhh-------------hhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 3455556666666667777776543 25677788888887774 45678899999988999989889
Q ss_pred HhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCch
Q 007516 383 FVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSST 462 (600)
Q Consensus 383 ~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~ 462 (600)
+..| ++|++|++++|.. +...++..+...|..|+.+.+.||..+.++.+..+..+|+-+-.+++..|..+||.
T Consensus 212 a~gC--~kL~~lNlSwc~q-----i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 212 AEGC--RKLKYLNLSWCPQ-----ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhh--hhHHHhhhccCch-----hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 9988 8999999999986 33445667778888888888888988888888888888888888888889889998
Q ss_pred hHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChH
Q 007516 463 SVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDF 542 (600)
Q Consensus 463 ~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~ 542 (600)
++..++..|.. |+.|+.++|..+++..+....+++++|+.|-+++|..++|.++..+. .+++.|+.|++..|..++|.
T Consensus 285 ~~~~i~~~c~~-lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 285 DLWLIACGCHA-LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-RNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HHHHHhhhhhH-hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-cCChhhhhhcccccceehhh
Confidence 88888877774 89999999988888888788888899999999999989988886654 44588999999999888888
Q ss_pred HHHHHHhcCCCccEEeecCCCCCChHHHHHHHh---cCCCccEEEeeCCC-CChhhhhc
Q 007516 543 SLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNA-FRFVFHRD 597 (600)
Q Consensus 543 ~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~---~c~~Lk~L~Ls~c~-isD~~i~~ 597 (600)
.+..++.+|+.|+.|.|++|..|||+|+..+.. +...|..|.|++|+ ++|..++.
T Consensus 363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 888888899999999999999999998887766 34578888899996 45544443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=3e-22 Score=208.79 Aligned_cols=271 Identities=18% Similarity=0.230 Sum_probs=204.9
Q ss_pred cccCCchhhhhHHHHHhcCCCCCCCCCCcHHHHHHHHHHhccCCCCChhHHhhhh--CCCCcEEEecCCCCCCHHHHHHH
Q 007516 305 KLIIPSLKELSMKILVQNADAITSLEHVPDALRHKLSFMLCDSRQMNSHFLNLLF--SGSPTEIRLRDCSWLTEQEFTKA 382 (600)
Q Consensus 305 ~~~~psL~dLcL~~l~~n~~~l~sL~~Lp~~~~~kL~~~L~~~~~Lt~~~l~l~~--~~~L~~L~L~~C~~Ltd~~L~~L 382 (600)
.+++..+++-.+..++++|..++.+. +..|..+|+..+..+. .+.+++|+++.|+.++..+++.+
T Consensus 171 l~gc~~iTd~s~~sla~~C~~l~~l~-------------L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 171 LYGCKKITDSSLLSLARYCRKLRHLN-------------LHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred hhcceeccHHHHHHHHHhcchhhhhh-------------hcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 45556666666666777777666444 3346666777776553 45567888888888888888888
Q ss_pred HhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCch
Q 007516 383 FVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSST 462 (600)
Q Consensus 383 ~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~ 462 (600)
.+.| .+|+.+.+.+|.. .....+......|+.+..+++..|..++|.++..+..+|..|+.|+.++|..+++.
T Consensus 238 ~rG~--~~l~~~~~kGC~e-----~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~ 310 (483)
T KOG4341|consen 238 QRGC--KELEKLSLKGCLE-----LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE 310 (483)
T ss_pred hccc--hhhhhhhhccccc-----ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence 8888 5688887788875 34455666667777788888888888888888888888888888888888888888
Q ss_pred hHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChH
Q 007516 463 SVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDF 542 (600)
Q Consensus 463 ~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~ 542 (600)
.+..|.++++ +|+.|-|..|.++++.++...-.++++|+.|++..|..++|..+..+.. +++.|+.|.|++|..+||.
T Consensus 311 ~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~-~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 311 VLWALGQHCH-NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSR-NCPRLRVLSLSHCELITDE 388 (483)
T ss_pred HHHHHhcCCC-ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhcc-CCchhccCChhhhhhhhhh
Confidence 8888888887 4888888888888887777777788888888888888788776666544 4488888888888888888
Q ss_pred HHHHHHh---cCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC-CCChhhhhcc
Q 007516 543 SLKVIAE---TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN-AFRFVFHRDF 598 (600)
Q Consensus 543 ~L~~L~~---~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c-~isD~~i~~f 598 (600)
++..+.. ....|+.|.|.+|+.+++..+..+.. |++|+.+++..| .++-++++.|
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~-c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI-CRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHHhh-CcccceeeeechhhhhhhhhHHH
Confidence 7777653 34578888888888888888777765 888888888888 6777776654
No 3
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.58 E-value=3.7e-15 Score=163.32 Aligned_cols=230 Identities=24% Similarity=0.417 Sum_probs=171.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|.+.+|..+++.++..++..| ++|+.|++++|.....+ .......+...|++|+.|++++|..++|.++.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKC--PNLEELDLSGCCLLITL--SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhC--chhheecccCccccccc--chhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 467788999999999998888888888 89999999984211221 11122336677899999999998889999999
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCC---CCCChHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI---ETVTDEF 516 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c---~~ltd~~ 516 (600)
.++..|++|+.|.+.+|..+++.++..++..|+. |++|+|++|..+++.++.....+|++|+.|.+..+ ..+++..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~-L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~ 341 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPS-LRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLS 341 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCc-ccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHH
Confidence 9999999999999999988999999999999985 99999999999888877777778887777655443 3455443
Q ss_pred HH-----------HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc--------------cEEeecCCCCCChHHHH
Q 007516 517 VR-----------GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL--------------CTLDLSNLYKLTDFGIG 571 (600)
Q Consensus 517 l~-----------~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L--------------~~LdLs~C~~lTd~~l~ 571 (600)
+. .+....+++|+.+.|.+|. +++.++..+...|+.| +.|+++.|..+|+.++.
T Consensus 342 l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~ 420 (482)
T KOG1947|consen 342 LSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLR 420 (482)
T ss_pred HHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchH
Confidence 32 2223344666666666665 5555555555566654 78888888888888888
Q ss_pred HHHhcCCCccEEEeeCC-CCChhhh
Q 007516 572 YLANGCQAIQTLKLCRN-AFRFVFH 595 (600)
Q Consensus 572 ~L~~~c~~Lk~L~Ls~c-~isD~~i 595 (600)
.+...|.++..+++.+| .++...+
T Consensus 421 ~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 421 CLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHhhhhhccccCCccCcccccchhh
Confidence 77776778888888887 3554443
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.9e-15 Score=152.32 Aligned_cols=207 Identities=17% Similarity=0.296 Sum_probs=171.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...+++|+|+... |+-..+..+...| .+|+.|.|.+.. +.|.+. . -+..-.+|+.|+|++|+.++..++.
T Consensus 184 rsRlq~lDLS~s~-it~stl~~iLs~C--~kLk~lSlEg~~--LdD~I~----~-~iAkN~~L~~lnlsm~sG~t~n~~~ 253 (419)
T KOG2120|consen 184 RSRLQHLDLSNSV-ITVSTLHGILSQC--SKLKNLSLEGLR--LDDPIV----N-TIAKNSNLVRLNLSMCSGFTENALQ 253 (419)
T ss_pred hhhhHHhhcchhh-eeHHHHHHHHHHH--Hhhhhccccccc--cCcHHH----H-HHhccccceeeccccccccchhHHH
Confidence 4457889999876 8999999999999 899999999886 444432 2 2344679999999999999999999
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccC-chhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQS-LNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~-l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
.+...|..|..|+|++|...++. +..+..+...+|+.|+|++|.. +....+......||+|..|+|+.|..++++.+.
T Consensus 254 ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~ 332 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 332 (419)
T ss_pred HHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH
Confidence 99999999999999999766665 6666666666799999999973 344455666789999999999999999998777
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccE
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQT 582 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~ 582 (600)
.++. .+-|++|.|+.|..|....+..+- ..|.|.+|++.+| ++|..++.+...|++|+.
T Consensus 333 ~~~k--f~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g~--vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 333 EFFK--FNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFGC--VSDTTMELLKEMLSHLKI 391 (419)
T ss_pred HHHh--cchheeeehhhhcCCChHHeeeec-cCcceEEEEeccc--cCchHHHHHHHhCccccc
Confidence 6654 378999999999999876666555 6899999999998 889889988888998764
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.55 E-value=4e-13 Score=139.82 Aligned_cols=225 Identities=25% Similarity=0.217 Sum_probs=154.5
Q ss_pred CCCCcEEEecCCCCCC--HHHHHHH---HhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCC
Q 007516 360 SGSPTEIRLRDCSWLT--EQEFTKA---FVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRIS 434 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Lt--d~~L~~L---~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~Lt 434 (600)
.+.+++|+++++. +. ..++..+ ...+ ++|+.|+|++|.. .+ .....+..+... ++|++|++++| .++
T Consensus 50 ~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~--~~-~~~~~~~~l~~~-~~L~~L~ls~~-~~~ 121 (319)
T cd00116 50 QPSLKELCLSLNE-TGRIPRGLQSLLQGLTKG--CGLQELDLSDNAL--GP-DGCGVLESLLRS-SSLQELKLNNN-GLG 121 (319)
T ss_pred CCCceEEeccccc-cCCcchHHHHHHHHHHhc--CceeEEEccCCCC--Ch-hHHHHHHHHhcc-CcccEEEeeCC-ccc
Confidence 3458899998876 34 3333332 2233 7999999998873 11 123334444455 77999999984 477
Q ss_pred hhhHHHHHh---cC-CCCcEEecCCCCCCCchhHHHHHhhcc--ccceEEEccCccCchhhh---HHHHHhcCCCCCEEE
Q 007516 435 DVGFKALVT---SA-PALRSINLSQCSLLSSTSVDILADKLG--SFIQELYINDCQSLNAML---ILPALRKLKHLEVLS 505 (600)
Q Consensus 435 D~~l~~L~~---~~-p~L~~L~Ls~C~~Itd~~L~~L~~~~~--s~L~~L~Ls~c~~l~d~~---i~~~l~~l~~Le~L~ 505 (600)
+.++..+.. .+ ++|+.|+|++|. ++..++..+...+. ..|++|+|++|. +++.. +...+..+++|+.|+
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 199 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLD 199 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEe
Confidence 666655433 34 889999999985 66555544443332 259999999985 44332 233456677999999
Q ss_pred ccCCCCCChHHHHHHHH--hcCCCccEEEecCCCCCChHHHHHHHhcC----CCccEEeecCCCCCChHHHHHHHhc---
Q 007516 506 VAGIETVTDEFVRGFVY--ACGHNMKELILTDCVKLTDFSLKVIAETC----PRLCTLDLSNLYKLTDFGIGYLANG--- 576 (600)
Q Consensus 506 Ls~c~~ltd~~l~~Ll~--~~~~sLk~L~Ls~C~~LtD~~L~~L~~~c----p~L~~LdLs~C~~lTd~~l~~L~~~--- 576 (600)
+++|. +++..+..+.. ..+++|++|++++| .+++.++..++..+ +.|++|++++| .+++.+...++..
T Consensus 200 L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~ 276 (319)
T cd00116 200 LNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAE 276 (319)
T ss_pred ccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhc
Confidence 99986 77766544432 23478999999997 68888888877664 78999999987 6887777666554
Q ss_pred CCCccEEEeeCCCCChhhhhc
Q 007516 577 CQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 577 c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
+++|++|++++|.++++..+.
T Consensus 277 ~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 277 KESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCCccEEECCCCCCcHHHHHH
Confidence 467999999999999875443
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.3e-14 Score=144.56 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=144.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
..|++|+|+... ++...+..+++.|.+|+.|+|.| ..+.|.....|++ -.+|+.|+|+.|..++..++..+.
T Consensus 185 sRlq~lDLS~s~------it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSV------ITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhh------eeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc-cccceeeccccccccchhHHHHHH
Confidence 358888888775 45667777888899999999988 7788887777776 478999999999889988888888
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhc-CCCCCEEEccCCCC-CChHHHHHHHHhcCCCccEEEecCCCCCChHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRK-LKHLEVLSVAGIET-VTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKV 546 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~-l~~Le~L~Ls~c~~-ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~ 546 (600)
..|.. |..|+|++|.-.++. +..+..+ -++|+.|+|+||.. +.+..+..+.. .||+|.+|||++|..+++..+..
T Consensus 257 ~scs~-L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~-rcp~l~~LDLSD~v~l~~~~~~~ 333 (419)
T KOG2120|consen 257 SSCSR-LDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVR-RCPNLVHLDLSDSVMLKNDCFQE 333 (419)
T ss_pred Hhhhh-HhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHH-hCCceeeeccccccccCchHHHH
Confidence 88874 999999999655554 3333333 35788899988853 34444544444 45899999999998888865555
Q ss_pred HHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 547 IAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 547 L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
+. .++.|++|.++.|..|-.+.+..+.+ .|.|.+|++.+| ++|..+
T Consensus 334 ~~-kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~-vsdt~m 379 (419)
T KOG2120|consen 334 FF-KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC-VSDTTM 379 (419)
T ss_pred HH-hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc-cCchHH
Confidence 55 68889999999998887766665554 788999998887 344343
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=6.4e-13 Score=138.30 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=135.3
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCC-CCCCEEEcCCcccCChhhH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSL-PSLTTLSICGACRISDVGF 438 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l-~~L~~L~Ls~c~~LtD~~l 438 (600)
.+.+++|+|++|. +.......+......++|++|++++|. +.+... ..+......+ ++|+.|+|++|. ++..++
T Consensus 80 ~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~--~~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNG--LGDRGL-RLLAKGLKDLPPALEKLVLGRNR-LEGASC 154 (319)
T ss_pred cCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCc--cchHHH-HHHHHHHHhCCCCceEEEcCCCc-CCchHH
Confidence 4567788888886 333222222221100358888888876 232111 1222233445 788888888854 554433
Q ss_pred HH---HHhcCCCCcEEecCCCCCCCchhHHHHHhhcc--ccceEEEccCccCchhh---hHHHHHhcCCCCCEEEccCCC
Q 007516 439 KA---LVTSAPALRSINLSQCSLLSSTSVDILADKLG--SFIQELYINDCQSLNAM---LILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 439 ~~---L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~--s~L~~L~Ls~c~~l~d~---~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
.. ....+++|++|+|++|. +++.++..+...++ .+|++|+|++|. +++. .+...+..+++|+.|++++|.
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 155 EALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 33 33456778888888874 66666655554432 258888888884 3322 234456677888888888876
Q ss_pred CCChHHHHHHHHhc---CCCccEEEecCCCCCChHHHHHHHh---cCCCccEEeecCCCCCChHHHHHHHhc---C-CCc
Q 007516 511 TVTDEFVRGFVYAC---GHNMKELILTDCVKLTDFSLKVIAE---TCPRLCTLDLSNLYKLTDFGIGYLANG---C-QAI 580 (600)
Q Consensus 511 ~ltd~~l~~Ll~~~---~~sLk~L~Ls~C~~LtD~~L~~L~~---~cp~L~~LdLs~C~~lTd~~l~~L~~~---c-~~L 580 (600)
+++..+..+.... .+.|++|++++| .+++.+...+.. .+++|++|+++++ .+++.+...++.. . +.|
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~ 309 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQLLAESLLEPGNEL 309 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHHHHHHHhhcCCch
Confidence 7776666554432 267888888886 677666555543 3467888888884 6777766655542 2 478
Q ss_pred cEEEeeCCCC
Q 007516 581 QTLKLCRNAF 590 (600)
Q Consensus 581 k~L~Ls~c~i 590 (600)
++|++.++++
T Consensus 310 ~~~~~~~~~~ 319 (319)
T cd00116 310 ESLWVKDDSF 319 (319)
T ss_pred hhcccCCCCC
Confidence 8888877754
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=1.6e-13 Score=150.34 Aligned_cols=226 Identities=24% Similarity=0.404 Sum_probs=175.1
Q ss_pred CcEEEecCCCC-CCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCC-cccCChhh--H
Q 007516 363 PTEIRLRDCSW-LTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICG-ACRISDVG--F 438 (600)
Q Consensus 363 L~~L~L~~C~~-Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~-c~~LtD~~--l 438 (600)
...+.+..|.. +....+..+...| ++|+.|.+..|.. +.+..+..+...+++|++|++++ |..+.+.+ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~L~~l~l~~~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 235 (482)
T KOG1947|consen 163 LESLSLSCCGSLLLDKILLRLLSSC--PLLKRLSLSGCSK-----ITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL 235 (482)
T ss_pred HheeeeecccccccHHHHHHHHhhC--chhhHhhhccccc-----CChhhHHHHHhhCchhheecccCcccccccchhHh
Confidence 34566666643 4455566677777 8999999999986 33333567788999999999998 45555544 4
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
..+...|++|++|++++|..++|.++..++..|+ +|++|.+.+|..+++.++......|++|+.|+|++|..++|.++.
T Consensus 236 ~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~-~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~ 314 (482)
T KOG1947|consen 236 LLLLSICRKLKSLDLSGCGLVTDIGLSALASRCP-NLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE 314 (482)
T ss_pred hhhhhhcCCcCccchhhhhccCchhHHHHHhhCC-CcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH
Confidence 4466779999999999998899999999999998 599999999998999999999999999999999999999999998
Q ss_pred HHHHhcCCCccEEEecC---CCCCChH------------HHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCc---
Q 007516 519 GFVYACGHNMKELILTD---CVKLTDF------------SLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAI--- 580 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~---C~~LtD~------------~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~L--- 580 (600)
.+... +++|+.|.+.. |..+++. ....+..+|++|+.+.|..|. +++.+...+..+|++|
T Consensus 315 ~~~~~-c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~ 392 (482)
T KOG1947|consen 315 ALLKN-CPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTES 392 (482)
T ss_pred HHHHh-CcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchH
Confidence 88555 68777765544 3445443 334455678888888888887 7777777777778766
Q ss_pred -----------cEEEeeCC-CCChhhhhcc
Q 007516 581 -----------QTLKLCRN-AFRFVFHRDF 598 (600)
Q Consensus 581 -----------k~L~Ls~c-~isD~~i~~f 598 (600)
+.|++..| .+++..+...
T Consensus 393 l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 393 LELRLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred HHHHhccCCccceEecccCccccccchHHH
Confidence 77888777 4666665543
No 9
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.5e-11 Score=127.17 Aligned_cols=189 Identities=20% Similarity=0.200 Sum_probs=100.7
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCC--chhHH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLS--STSVD 465 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~It--d~~L~ 465 (600)
+.+|+.+.|.+|. +...........|++++.|+|+++-.-....+..|++.+|+|+.|+|+.|.... +....
T Consensus 120 ~kkL~~IsLdn~~------V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYR------VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred HHhhhheeecCcc------ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3566666666665 111222234556777777777764444445566666677777777777653111 11111
Q ss_pred HHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHH
Q 007516 466 ILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLK 545 (600)
Q Consensus 466 ~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~ 545 (600)
. .++ .|+.|.|+.| +++...+...+..+|+|+.|+|..+..+.-... -......|++|+|++...++-..+.
T Consensus 194 ~---~l~-~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N~li~~~~~~ 265 (505)
T KOG3207|consen 194 L---LLS-HLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNNNLIDFDQGY 265 (505)
T ss_pred h---hhh-hhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCCccccccccc
Confidence 1 122 4677777777 355555666677777777777766642221111 1112245677777775544433333
Q ss_pred HHHhcCCCccEEeecCCCCCChHHHH-----HHHhcCCCccEEEeeCCCCCh
Q 007516 546 VIAETCPRLCTLDLSNLYKLTDFGIG-----YLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 546 ~L~~~cp~L~~LdLs~C~~lTd~~l~-----~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.+. .+|.|..|+++.| .+++-.+. ......++|++|++..|+|.|
T Consensus 266 ~~~-~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 266 KVG-TLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccc-cccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 333 5667777777664 34432221 123345667777777776643
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.00 E-value=7.1e-10 Score=135.45 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=66.9
Q ss_pred ccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChH----------
Q 007516 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDF---------- 542 (600)
Q Consensus 473 s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~---------- 542 (600)
++|+.|+|++|..+.. +...+.++++|+.|+|++|..+.. +...+ .+++|+.|+|++|..+...
T Consensus 778 ~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~--~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLET--LPTGI--NLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred ccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCe--eCCCC--CccccCEEECCCCCccccccccccccCEe
Confidence 3577777777765443 345567788888888888865542 11111 2367777777777554321
Q ss_pred --------HHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC
Q 007516 543 --------SLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (600)
Q Consensus 543 --------~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c 588 (600)
.+..-...+++|+.|+|++|++++.- ......+++|+.|++++|
T Consensus 852 ~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l--~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 852 NLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV--SLNISKLKHLETVDFSDC 903 (1153)
T ss_pred ECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc--CcccccccCCCeeecCCC
Confidence 11112235788888999888887752 222345677888888888
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.00 E-value=3.5e-09 Score=109.60 Aligned_cols=199 Identities=22% Similarity=0.174 Sum_probs=123.9
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHH------------hcCCCCcEEecCCC
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALV------------TSAPALRSINLSQC 456 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~------------~~~p~L~~L~Ls~C 456 (600)
|+|++|+|+.+-. ... ....+..++.+|..|++|.|.+| .++..+-..|. ..-+.|+.+...+|
T Consensus 92 ~~L~~ldLSDNA~--G~~-g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 92 PKLQKLDLSDNAF--GPK-GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred CceeEeecccccc--Ccc-chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 5777777777642 221 23456666677777777777774 34443322221 12456777777776
Q ss_pred CCCCchhHHHHHh---hccccceEEEccCccCch--hhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHH--hcCCCcc
Q 007516 457 SLLSSTSVDILAD---KLGSFIQELYINDCQSLN--AMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY--ACGHNMK 529 (600)
Q Consensus 457 ~~Itd~~L~~L~~---~~~s~L~~L~Ls~c~~l~--d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~--~~~~sLk 529 (600)
.+.+.+...++. .+| .|+.+.+..+..-. ...+...+.+|++|+.|+|..+. ++-.+-..+.. ...++|+
T Consensus 168 -rlen~ga~~~A~~~~~~~-~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHP-TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -ccccccHHHHHHHHHhcc-ccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchhe
Confidence 355544444433 344 47777777664221 12345567889999999987776 55444333322 1226788
Q ss_pred EEEecCCCCCChHHHHHHH----hcCCCccEEeecCCCCCChHHHHHHHh---cCCCccEEEeeCCCC--Chhhhh
Q 007516 530 ELILTDCVKLTDFSLKVIA----ETCPRLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNAF--RFVFHR 596 (600)
Q Consensus 530 ~L~Ls~C~~LtD~~L~~L~----~~cp~L~~LdLs~C~~lTd~~l~~L~~---~c~~Lk~L~Ls~c~i--sD~~i~ 596 (600)
+|++++| .+.+.+..++. ...|.|+.|.+.+| .||..+...++. ..|.|+.|+|++|.+ .|+.+.
T Consensus 245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ 318 (382)
T KOG1909|consen 245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGID 318 (382)
T ss_pred eeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHH
Confidence 9999998 56666555544 45688999999985 577776655544 257899999999988 555544
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.97 E-value=1.8e-09 Score=129.74 Aligned_cols=209 Identities=21% Similarity=0.178 Sum_probs=129.1
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
....+++|+|+++. ++.. +.. ..+++|++|+|++|.. . ..++..+..+++|+.|+|++|. +.....
T Consensus 116 ~l~~L~~L~Ls~n~-l~~~----~p~-~~l~~L~~L~Ls~n~~--~-----~~~p~~~~~l~~L~~L~L~~n~-l~~~~p 181 (968)
T PLN00113 116 TSSSLRYLNLSNNN-FTGS----IPR-GSIPNLETLDLSNNML--S-----GEIPNDIGSFSSLKVLDLGGNV-LVGKIP 181 (968)
T ss_pred cCCCCCEEECcCCc-cccc----cCc-cccCCCCEEECcCCcc--c-----ccCChHHhcCCCCCEEECccCc-ccccCC
Confidence 34567788888775 2210 111 1247888888888752 1 1122344678889999998854 332222
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
..+ ..+++|+.|+|++|. ++......+. .++ +|+.|+|++|..... +...+..+++|++|++++|. ++....
T Consensus 182 ~~~-~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~-~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p- 253 (968)
T PLN00113 182 NSL-TNLTSLEFLTLASNQ-LVGQIPRELG-QMK-SLKWIYLGYNNLSGE--IPYEIGGLTSLNHLDLVYNN-LTGPIP- 253 (968)
T ss_pred hhh-hhCcCCCeeeccCCC-CcCcCChHHc-CcC-CccEEECcCCccCCc--CChhHhcCCCCCEEECcCce-eccccC-
Confidence 233 347889999998885 3322222222 333 589999988853321 34567888999999998886 432211
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
..+. .+++|+.|+|++| .+++.....+. .+++|+.|+|++| .++.. +......+++|+.|++++|.++...
T Consensus 254 ~~l~-~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 254 SSLG-NLKNLQYLFLYQN-KLSGPIPPSIF-SLQKLISLDLSDN-SLSGE-IPELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred hhHh-CCCCCCEEECcCC-eeeccCchhHh-hccCcCEEECcCC-eeccC-CChhHcCCCCCcEEECCCCccCCcC
Confidence 1222 3478999999886 34432222333 6789999999987 45433 2333456889999999999887644
No 13
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.96 E-value=1.4e-09 Score=130.58 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=49.8
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L 554 (600)
|+.|+|++|..... +...+..+++|+.|+|++|. ++... ...+. .+++|+.|+|++| .++......+ ..+++|
T Consensus 262 L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-l~~~~-p~~~~-~l~~L~~L~l~~n-~~~~~~~~~~-~~l~~L 334 (968)
T PLN00113 262 LQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNS-LSGEI-PELVI-QLQNLEILHLFSN-NFTGKIPVAL-TSLPRL 334 (968)
T ss_pred CCEEECcCCeeecc--CchhHhhccCcCEEECcCCe-eccCC-ChhHc-CCCCCcEEECCCC-ccCCcCChhH-hcCCCC
Confidence 55555555532111 22334455555555555553 22211 11111 2255666666654 2332211222 256666
Q ss_pred cEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 555 ~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+.|+|++|. ++...... ...+++|+.|++++|.++.
T Consensus 335 ~~L~L~~n~-l~~~~p~~-l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 335 QVLQLWSNK-FSGEIPKN-LGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CEEECcCCC-CcCcCChH-HhCCCCCcEEECCCCeeEe
Confidence 666666653 33222122 2335667777777776654
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=4.2e-09 Score=109.08 Aligned_cols=209 Identities=22% Similarity=0.258 Sum_probs=151.4
Q ss_pred hCCCCcEEEecCCCCCCH---HHHHHHHhhCCCCCCceeecCCCCCCCCchhh---HHH-----HHHHhcCCCCCCEEEc
Q 007516 359 FSGSPTEIRLRDCSWLTE---QEFTKAFVSCDTKNLTVLQLDRCGRCMPDYIL---LST-----LASSLNSLPSLTTLSI 427 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd---~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~---~~~-----L~~~~~~l~~L~~L~L 427 (600)
..+.++.|+|++.. +.. .+|..+.+.| ..|++|-|++|+. ....- ... ......+-+.|+.+..
T Consensus 90 ~~~~L~~ldLSDNA-~G~~g~~~l~~ll~s~--~~L~eL~L~N~Gl--g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNA-FGPKGIRGLEELLSSC--TDLEELYLNNCGL--GPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred cCCceeEeeccccc-cCccchHHHHHHHHhc--cCHHHHhhhcCCC--ChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 45688999999985 444 4566777888 7999999999984 22111 010 1223456678999999
Q ss_pred CCcccCChhhHH---HHHhcCCCCcEEecCCCCCCCchhHHHHH---hhccccceEEEccCccCch--hhhHHHHHhcCC
Q 007516 428 CGACRISDVGFK---ALVTSAPALRSINLSQCSLLSSTSVDILA---DKLGSFIQELYINDCQSLN--AMLILPALRKLK 499 (600)
Q Consensus 428 s~c~~LtD~~l~---~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~---~~~~s~L~~L~Ls~c~~l~--d~~i~~~l~~l~ 499 (600)
+. +++.+.+.. ..++.+|.|+.+.+.++ .|...++..++ .+|| +|+.|+|.+|..-. ...+...++.++
T Consensus 165 ~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 165 GR-NRLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ec-cccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccc
Confidence 87 777777644 45567899999999998 46666664443 3566 59999999996432 223556788899
Q ss_pred CCCEEEccCCCCCChHHHHHHH---HhcCCCccEEEecCCCCCChHHHHHHHh---cCCCccEEeecCCCCC--ChHHHH
Q 007516 500 HLEVLSVAGIETVTDEFVRGFV---YACGHNMKELILTDCVKLTDFSLKVIAE---TCPRLCTLDLSNLYKL--TDFGIG 571 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll---~~~~~sLk~L~Ls~C~~LtD~~L~~L~~---~cp~L~~LdLs~C~~l--Td~~l~ 571 (600)
+|+.|+++.|. +.+.+..+++ ....|+|+.|.|.+| .|+-.+...++. .-|.|+.|+|++| .+ .++++.
T Consensus 242 ~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ 318 (382)
T KOG1909|consen 242 HLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGID 318 (382)
T ss_pred hheeecccccc-cccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHH
Confidence 99999999998 7776655554 234589999999996 687766665542 3589999999997 56 678888
Q ss_pred HHHhcCC
Q 007516 572 YLANGCQ 578 (600)
Q Consensus 572 ~L~~~c~ 578 (600)
.++...+
T Consensus 319 ei~~~~~ 325 (382)
T KOG1909|consen 319 EIASKFD 325 (382)
T ss_pred HHHHhcc
Confidence 8888663
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4e-10 Score=119.30 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=129.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHH
Q 007516 363 PTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALV 442 (600)
Q Consensus 363 L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~ 442 (600)
|+++.|.+|+ +...+....++.| ++++.|+|+.+- ++.+ ..+..++..+|+|+.|+|+. +++....-....
T Consensus 123 L~~IsLdn~~-V~~~~~~~~~k~~--~~v~~LdLS~NL--~~nw---~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 123 LREISLDNYR-VEDAGIEEYSKIL--PNVRDLDLSRNL--FHNW---FPVLKIAEQLPSLENLNLSS-NRLSNFISSNTT 193 (505)
T ss_pred hhheeecCcc-ccccchhhhhhhC--Ccceeecchhhh--HHhH---HHHHHHHHhcccchhccccc-ccccCCccccch
Confidence 4567777776 6665555666777 788888887763 2322 23455667788888888887 333221111122
Q ss_pred hcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHH
Q 007516 443 TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY 522 (600)
Q Consensus 443 ~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~ 522 (600)
..+++|+.|.|+.| .++...+..++..+|+ |+.|+|..+..+.... .....+..|+.|+|+++..++-+.+.. .
T Consensus 194 ~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~~~~--~ 267 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSC-GLSWKDVQWILLTFPS-LEVLYLEANEIILIKA--TSTKILQTLQELDLSNNNLIDFDQGYK--V 267 (505)
T ss_pred hhhhhhheEEeccC-CCCHHHHHHHHHhCCc-HHHhhhhcccccceec--chhhhhhHHhhccccCCcccccccccc--c
Confidence 24577888888888 5777778788878885 8888888875332221 223345578888888887665443321 2
Q ss_pred hcCCCccEEEecCCCCCChHH-----HHHHHhcCCCccEEeecCCCCCChH-HHHHHHhcCCCccEEEeeCCCCCh
Q 007516 523 ACGHNMKELILTDCVKLTDFS-----LKVIAETCPRLCTLDLSNLYKLTDF-GIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 523 ~~~~sLk~L~Ls~C~~LtD~~-----L~~L~~~cp~L~~LdLs~C~~lTd~-~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..++.|..|+++.| .+++.. ........++|++|++.. ++|.+- .+..+- ..++|+.|.+.++.++-
T Consensus 268 ~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 268 GTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLR-TLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhh-ccchhhhhhcccccccc
Confidence 34577888888776 343322 222234567888888887 345432 233332 25667777766666554
No 16
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.80 E-value=4.1e-08 Score=113.17 Aligned_cols=267 Identities=19% Similarity=0.196 Sum_probs=172.4
Q ss_pred CCchhhhhHHHHHhcCCC---CCCCCCCcHHHHHHHHHHhccC-CCCChhHHhhh-hCCCCcEEEecCCCCCCHHHHHHH
Q 007516 308 IPSLKELSMKILVQNADA---ITSLEHVPDALRHKLSFMLCDS-RQMNSHFLNLL-FSGSPTEIRLRDCSWLTEQEFTKA 382 (600)
Q Consensus 308 ~psL~dLcL~~l~~n~~~---l~sL~~Lp~~~~~kL~~~L~~~-~~Lt~~~l~l~-~~~~L~~L~L~~C~~Ltd~~L~~L 382 (600)
+++|.++..+.++.++.+ ...--.+++...+++...+... ...+......+ ..-+++.+++.+-. +....+..+
T Consensus 2 ~~sl~~~a~~~ia~~i~ng~y~~~~~~ld~~sSn~i~~~ll~~~~~~~~~~~~~~~~~f~ltki~l~~~~-~~~~~~~~l 80 (699)
T KOG3665|consen 2 VSSLADIACQKIAEYIQNGSYNNLQYELDPKSSNKIYSELLLKKFELTPEFLERIIRKFNLTKIDLKNVT-LQHQTLEML 80 (699)
T ss_pred CCchhhhhHHHHHHHHhcCCccccceecChhhhHHHHHHHHhccCCCchhHHHhhhhhheeEEeecccee-cchhHHHHH
Confidence 567788888888766543 1111245555666665544432 11222222222 22345667777654 455555555
Q ss_pred HhhCCCCCCceeecCCCCCCCCchhhH------HHHHHH--hcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecC
Q 007516 383 FVSCDTKNLTVLQLDRCGRCMPDYILL------STLASS--LNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLS 454 (600)
Q Consensus 383 ~~~c~l~~L~~L~Ls~c~~~~~D~~~~------~~L~~~--~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls 454 (600)
-. ..|++|.|++....-.+.... ..+..+ ...-.+|++|+++|-..+...-...+...+|+|++|.++
T Consensus 81 ~~----~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~ 156 (699)
T KOG3665|consen 81 RK----QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS 156 (699)
T ss_pred hh----ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEec
Confidence 44 348888887765311111000 011111 123458999999996667666667788889999999998
Q ss_pred CCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEec
Q 007516 455 QCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILT 534 (600)
Q Consensus 455 ~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls 534 (600)
+-. +....+..++.++| +|.+|||+++ ++++. ..++++++|++|.+.+..--+-..+..++. +++|+.||+|
T Consensus 157 ~~~-~~~~dF~~lc~sFp-NL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF~--L~~L~vLDIS 228 (699)
T KOG3665|consen 157 GRQ-FDNDDFSQLCASFP-NLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLFN--LKKLRVLDIS 228 (699)
T ss_pred Cce-ecchhHHHHhhccC-ccceeecCCC-CccCc---HHHhccccHHHHhccCCCCCchhhHHHHhc--ccCCCeeecc
Confidence 854 44444778888888 5999999998 46653 678899999999998877444455556643 5899999999
Q ss_pred CCCCCChHHHHH----HHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC
Q 007516 535 DCVKLTDFSLKV----IAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (600)
Q Consensus 535 ~C~~LtD~~L~~----L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c 588 (600)
.-....+.-+.. ....+|+|+.||.++ +.++.+.+..+...-|+|+.+.+-+|
T Consensus 229 ~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 229 RDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred ccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCccHhhhhhhhh
Confidence 855544431211 123579999999998 67899999988888888887775544
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.66 E-value=4.4e-08 Score=119.92 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=47.4
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
+++|+.|+|++|..+ . .++ ....+++|+.|+|++|..+.... .-...+++|+.|+|++|..++..... +
T Consensus 633 l~~Lk~L~Ls~~~~l-~------~ip-~ls~l~~Le~L~L~~c~~L~~lp--~si~~L~~L~~L~L~~c~~L~~Lp~~-i 701 (1153)
T PLN03210 633 LTGLRNIDLRGSKNL-K------EIP-DLSMATNLETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTG-I 701 (1153)
T ss_pred CCCCCEEECCCCCCc-C------cCC-ccccCCcccEEEecCCCCccccc--hhhhccCCCCEEeCCCCCCcCccCCc-C
Confidence 367777777766531 1 011 13456777777777776654322 22234677888888777655442211 0
Q ss_pred HhhccccceEEEccCccCc
Q 007516 468 ADKLGSFIQELYINDCQSL 486 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~~l 486 (600)
.+. +|+.|+|++|..+
T Consensus 702 --~l~-sL~~L~Lsgc~~L 717 (1153)
T PLN03210 702 --NLK-SLYRLNLSGCSRL 717 (1153)
T ss_pred --CCC-CCCEEeCCCCCCc
Confidence 222 4777777777543
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.50 E-value=2.7e-08 Score=108.71 Aligned_cols=207 Identities=18% Similarity=0.240 Sum_probs=97.8
Q ss_pred CCCcEEEecCC--CCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 361 GSPTEIRLRDC--SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 361 ~~L~~L~L~~C--~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
+.++.|+|... +.++.+.+..+ +.|++|+|+.+.. +. .-......-.+|++|+|++ +.|++.+.
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l------~alrslDLSrN~i--s~-----i~~~sfp~~~ni~~L~La~-N~It~l~~ 190 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSAL------PALRSLDLSRNLI--SE-----IPKPSFPAKVNIKKLNLAS-NRITTLET 190 (873)
T ss_pred cceeEEeeeccccccccHHHHHhH------hhhhhhhhhhchh--hc-----ccCCCCCCCCCceEEeecc-cccccccc
Confidence 34566666654 34555555544 4666666665531 00 0001112234566677666 55665554
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC--CCChHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE--TVTDEF 516 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~--~ltd~~ 516 (600)
..+.. +.+|..|.|+.|. |+......+. .+| .|+.|+|..+..-... ...++.+++|+.|.|..+. .+.|..
T Consensus 191 ~~F~~-lnsL~tlkLsrNr-ittLp~r~Fk-~L~-~L~~LdLnrN~irive--~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 191 GHFDS-LNSLLTLKLSRNR-ITTLPQRSFK-RLP-KLESLDLNRNRIRIVE--GLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccccc-cchheeeecccCc-ccccCHHHhh-hcc-hhhhhhccccceeeeh--hhhhcCchhhhhhhhhhcCcccccCcc
Confidence 44432 4466666666653 4443333332 344 3666666555311110 1223445555555544332 122221
Q ss_pred HHH--------------------HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhc
Q 007516 517 VRG--------------------FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (600)
Q Consensus 517 l~~--------------------Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~ 576 (600)
+.. ++. .++.|+.|+|+++ .|....+.... .|++|+.|+|++ ++|+.-.-..+..
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~N-aI~rih~d~Ws-ftqkL~~LdLs~-N~i~~l~~~sf~~- 339 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYN-AIQRIHIDSWS-FTQKLKELDLSS-NRITRLDEGSFRV- 339 (873)
T ss_pred eeeecccceeecccchhhhhhccccc-ccchhhhhccchh-hhheeecchhh-hcccceeEeccc-cccccCChhHHHH-
Confidence 110 010 1245555555552 33333333332 577777777776 4565433233322
Q ss_pred CCCccEEEeeCCCCCh
Q 007516 577 CQAIQTLKLCRNAFRF 592 (600)
Q Consensus 577 c~~Lk~L~Ls~c~isD 592 (600)
+..|++|+|++|.|+-
T Consensus 340 L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDH 355 (873)
T ss_pred HHHhhhhcccccchHH
Confidence 4557777777776653
No 19
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.43 E-value=5.2e-07 Score=104.20 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=112.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCc-hhHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSS-TSVDIL 467 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd-~~L~~L 467 (600)
.+|++|+|++-.. +...+.......+|+|++|.+.| ..+....+..++.++|+|.+|||+++. +++ .|+..+
T Consensus 122 ~nL~~LdI~G~~~-----~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-----FSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRL 194 (699)
T ss_pred HhhhhcCccccch-----hhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCcHHHhcc
Confidence 6899999988665 33445566778899999999998 556566688888899999999999984 555 344333
Q ss_pred HhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHH-HHHHH--HhcCCCccEEEecCCCCCChHHH
Q 007516 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEF-VRGFV--YACGHNMKELILTDCVKLTDFSL 544 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~-l~~Ll--~~~~~sLk~L~Ls~C~~LtD~~L 544 (600)
- +|+.|.+.+-..-... ....+..+++|++||++......+.- +..++ ...+|+|+.||.++ ..++...+
T Consensus 195 k-----nLq~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~l 267 (699)
T KOG3665|consen 195 K-----NLQVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEIL 267 (699)
T ss_pred c-----cHHHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHH
Confidence 2 5888877665433322 34567789999999998877555542 22222 23458999999998 67888888
Q ss_pred HHHHhcCCCccEEeecC
Q 007516 545 KVIAETCPRLCTLDLSN 561 (600)
Q Consensus 545 ~~L~~~cp~L~~LdLs~ 561 (600)
..+...-|+|+.+.+-+
T Consensus 268 e~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 268 EELLNSHPNLQQIAALD 284 (699)
T ss_pred HHHHHhCccHhhhhhhh
Confidence 88877677777665544
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.37 E-value=3.6e-08 Score=108.15 Aligned_cols=198 Identities=19% Similarity=0.217 Sum_probs=131.8
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKAL 441 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L 441 (600)
.++.|+|++.+ +....+..+... ..|+.|++++..+. ...++..+..+.+|..++|+. +.+.-.. ..+
T Consensus 174 ~LqtL~Ls~NP-L~hfQLrQLPsm---tsL~vLhms~TqRT------l~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecl 241 (1255)
T KOG0444|consen 174 MLQTLKLSNNP-LNHFQLRQLPSM---TSLSVLHMSNTQRT------LDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECL 241 (1255)
T ss_pred hhhhhhcCCCh-hhHHHHhcCccc---hhhhhhhcccccch------hhcCCCchhhhhhhhhccccc-cCCCcch-HHH
Confidence 46788999887 666666666543 57888899988762 222344556788999999996 5554322 222
Q ss_pred HhcCCCCcEEecCCCCCCCchhH--HHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 442 VTSAPALRSINLSQCSLLSSTSV--DILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 442 ~~~~p~L~~L~Ls~C~~Itd~~L--~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
..+++|+.|+|++|. |+.-.+ ..- .+|++|+|+.++ ++. +...+.+++.|+.|.+.++. ++-+++.+
T Consensus 242 -y~l~~LrrLNLS~N~-iteL~~~~~~W-----~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~Nk-L~FeGiPS 310 (1255)
T KOG0444|consen 242 -YKLRNLRRLNLSGNK-ITELNMTEGEW-----ENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANNNK-LTFEGIPS 310 (1255)
T ss_pred -hhhhhhheeccCcCc-eeeeeccHHHH-----hhhhhhccccch-hcc--chHHHhhhHHHHHHHhccCc-ccccCCcc
Confidence 236899999999984 555322 111 269999999985 443 56788899999999987766 77666655
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCC
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNA 589 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~ 589 (600)
-+... .+|+.+..+++ .+. ..-..++ .|+.|+.|.|.+...||- ..-..-++.|+.||+..|+
T Consensus 311 GIGKL-~~Levf~aanN-~LE-lVPEglc-RC~kL~kL~L~~NrLiTL---PeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 311 GIGKL-IQLEVFHAANN-KLE-LVPEGLC-RCVKLQKLKLDHNRLITL---PEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred chhhh-hhhHHHHhhcc-ccc-cCchhhh-hhHHHHHhcccccceeec---hhhhhhcCCcceeeccCCc
Confidence 44332 56777777763 332 1122333 788999999998777763 3333346678889888773
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.25 E-value=2.9e-07 Score=100.77 Aligned_cols=210 Identities=19% Similarity=0.225 Sum_probs=100.1
Q ss_pred hhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhh
Q 007516 358 LFSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVG 437 (600)
Q Consensus 358 ~~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~ 437 (600)
+..+..+.|+|++.. +++..+..+.. +++|+.++|..+.. ..++.+..-..+|+.|+|.+ +.|+...
T Consensus 75 ~lp~~t~~LdlsnNk-l~~id~~~f~n---l~nLq~v~l~~N~L--------t~IP~f~~~sghl~~L~L~~-N~I~sv~ 141 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNK-LSHIDFEFFYN---LPNLQEVNLNKNEL--------TRIPRFGHESGHLEKLDLRH-NLISSVT 141 (873)
T ss_pred cCccceeeeeccccc-cccCcHHHHhc---CCcceeeeeccchh--------hhcccccccccceeEEeeec-ccccccc
Confidence 344555678888764 55444443332 37888888877642 23344445555677777776 4444333
Q ss_pred HHHHHhcCCCCcEEecCCCC-----------------------CCCchhHHHHHhhccccceEEEccCccCchhhhHHHH
Q 007516 438 FKALVTSAPALRSINLSQCS-----------------------LLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (600)
Q Consensus 438 l~~L~~~~p~L~~L~Ls~C~-----------------------~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~ 494 (600)
-..+.. +|.|++|||+.|. .|++.+.-.+.. +. +|..|.|+.+. ++.. -...
T Consensus 142 se~L~~-l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~-ln-sL~tlkLsrNr-ittL-p~r~ 216 (873)
T KOG4194|consen 142 SEELSA-LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDS-LN-SLLTLKLSRNR-ITTL-PQRS 216 (873)
T ss_pred HHHHHh-HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccc-cc-hheeeecccCc-cccc-CHHH
Confidence 333221 3444444444431 244333222221 11 35555555553 2211 1245
Q ss_pred HhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEE------------------------EecCCCCCChHHHHHHHhc
Q 007516 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKEL------------------------ILTDCVKLTDFSLKVIAET 550 (600)
Q Consensus 495 l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L------------------------~Ls~C~~LtD~~L~~L~~~ 550 (600)
++++++|+.|+|..+. |... ..+...-+++|+.| +|+.+ +++...-..+. +
T Consensus 217 Fk~L~~L~~LdLnrN~-iriv--e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-g 291 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNR-IRIV--EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-G 291 (873)
T ss_pred hhhcchhhhhhccccc-eeee--hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccc-c
Confidence 6667777777776554 2111 00111112333333 33331 22211111112 3
Q ss_pred CCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 551 cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+..|+.|+|++ +.|....+.. -+.|++|++|+|+.|.|+.
T Consensus 292 Lt~L~~L~lS~-NaI~rih~d~-WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 292 LTSLEQLDLSY-NAIQRIHIDS-WSFTQKLKELDLSSNRITR 331 (873)
T ss_pred cchhhhhccch-hhhheeecch-hhhcccceeEecccccccc
Confidence 45566666665 2332222111 2348899999999997764
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=8.2e-07 Score=85.75 Aligned_cols=129 Identities=28% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHh
Q 007516 390 NLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILAD 469 (600)
Q Consensus 390 ~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~ 469 (600)
.+++|+|.++.. ..+..+...+.+|+.|+|++ +.|+... .+ ..++.|+.|++++|. |+..+- .+..
T Consensus 20 ~~~~L~L~~n~I--------~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~--~l-~~L~~L~~L~L~~N~-I~~i~~-~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQI--------STIENLGATLDKLEVLDLSN-NQITKLE--GL-PGLPRLKTLDLSNNR-ISSISE-GLDK 85 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TT-S--S--T--T-----TT--EEE--SS----S-CH-HHHH
T ss_pred cccccccccccc--------ccccchhhhhcCCCEEECCC-CCCcccc--Cc-cChhhhhhcccCCCC-CCcccc-chHH
Confidence 456666666542 11122222345666666665 3333211 11 124566666666653 443211 1222
Q ss_pred hccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEec
Q 007516 470 KLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILT 534 (600)
Q Consensus 470 ~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls 534 (600)
.+| +|++|+|+++. +.+..-...++.|++|+.|+|.++.--.......++...+|+|+.||-.
T Consensus 86 ~lp-~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 86 NLP-NLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp H-T-T--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hCC-cCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 344 36666666553 2222122344555666666665554211222223333334555555443
No 23
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=2.5e-05 Score=79.06 Aligned_cols=232 Identities=16% Similarity=0.115 Sum_probs=146.3
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhC-CCCCCceeecCCCCC-CCCchhhHH--HHHHHhcCCCCCCEEEcCCcccCC
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSC-DTKNLTVLQLDRCGR-CMPDYILLS--TLASSLNSLPSLTTLSICGACRIS 434 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c-~l~~L~~L~Ls~c~~-~~~D~~~~~--~L~~~~~~l~~L~~L~Ls~c~~Lt 434 (600)
....+++++|++.. |...++..++..- .-.+|+..+++.-.- ...|.+... .+...+-.||.|+..+|+. +-++
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSD-NAfg 105 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSD-NAFG 105 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccc-cccC
Confidence 34567889999987 7777777766532 125677777654320 012222111 2233456799999999998 4444
Q ss_pred hhh---HHHHHhcCCCCcEEecCCCCCCCchhHHHHHh------------hccccceEEEccCccCch--hhhHHHHHhc
Q 007516 435 DVG---FKALVTSAPALRSINLSQCSLLSSTSVDILAD------------KLGSFIQELYINDCQSLN--AMLILPALRK 497 (600)
Q Consensus 435 D~~---l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~------------~~~s~L~~L~Ls~c~~l~--d~~i~~~l~~ 497 (600)
... +..+..+...|.+|.|++| .+...+=..+++ .-| .|+++....+..-. ..-....++.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp-~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKP-KLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCC-CceEEEeccchhccCcHHHHHHHHHh
Confidence 333 4445556788999999998 455533223321 124 49998887775221 1112334555
Q ss_pred CCCCCEEEccCCCCCChHHHHHHH---HhcCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEeecCCCCCChHHHH
Q 007516 498 LKHLEVLSVAGIETVTDEFVRGFV---YACGHNMKELILTDCVKLTDFSLKVIA---ETCPRLCTLDLSNLYKLTDFGIG 571 (600)
Q Consensus 498 l~~Le~L~Ls~c~~ltd~~l~~Ll---~~~~~sLk~L~Ls~C~~LtD~~L~~L~---~~cp~L~~LdLs~C~~lTd~~l~ 571 (600)
-.+|+++.+..+. |..+++..++ ...+.+|+.|+|.++ .+|-.+-..++ ...+.|+.|.+..| .++..|..
T Consensus 184 h~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~ 260 (388)
T COG5238 184 HENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVK 260 (388)
T ss_pred hcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccch-hhccccHH
Confidence 5789999987776 7777665543 234589999999884 56554444444 34567899999999 56777766
Q ss_pred HHHhc-----CCCccEEEeeCCCCChhhhhc
Q 007516 572 YLANG-----CQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 572 ~L~~~-----c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
.+... .|+|..|...+|.+...++.+
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 66553 578888888888776666554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.10 E-value=2.9e-06 Score=98.78 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=48.8
Q ss_pred CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCC
Q 007516 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQA 579 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~ 579 (600)
+|+.|+|+++. ++. +.. ..++|+.|+|+++ .++. +.. ...+|+.|+|++ ++++. +..-...+++
T Consensus 383 ~L~~LdLs~N~-Lt~--LP~----l~s~L~~LdLS~N-~Lss--IP~---l~~~L~~L~Ls~-NqLt~--LP~sl~~L~~ 446 (788)
T PRK15387 383 GLKELIVSGNR-LTS--LPV----LPSELKELMVSGN-RLTS--LPM---LPSGLLSLSVYR-NQLTR--LPESLIHLSS 446 (788)
T ss_pred ccceEEecCCc-ccC--CCC----cccCCCEEEccCC-cCCC--CCc---chhhhhhhhhcc-Ccccc--cChHHhhccC
Confidence 56666666654 331 111 1246777777775 3442 111 123577777777 35552 2222335789
Q ss_pred ccEEEeeCCCCChhhhhcc
Q 007516 580 IQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 580 Lk~L~Ls~c~isD~~i~~f 598 (600)
|+.|+|++|++++..+..|
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 9999999999998766543
No 25
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.06 E-value=5.3e-07 Score=99.21 Aligned_cols=136 Identities=20% Similarity=0.194 Sum_probs=71.5
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCC--hHHHHHHHH
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVT--DEFVRGFVY 522 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~lt--d~~l~~Ll~ 522 (600)
+.+|++|.|++|+ +.-..+..+... . .|+.|.+++.... -..+...+..+.+|..++++.+. +. .+.+.
T Consensus 172 L~~LqtL~Ls~NP-L~hfQLrQLPsm-t-sL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly---- 242 (1255)
T KOG0444|consen 172 LSMLQTLKLSNNP-LNHFQLRQLPSM-T-SLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSENN-LPIVPECLY---- 242 (1255)
T ss_pred HhhhhhhhcCCCh-hhHHHHhcCccc-h-hhhhhhcccccch-hhcCCCchhhhhhhhhccccccC-CCcchHHHh----
Confidence 4456666666654 222333333311 1 3555556555322 22244455556666666665543 22 12221
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhh
Q 007516 523 ACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 523 ~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
..++|+.|+|++ +.||...+. .....+|++|+|+. +++|. +..-...+++|+.|.+..|.++-++|.
T Consensus 243 -~l~~LrrLNLS~-N~iteL~~~--~~~W~~lEtLNlSr-NQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 243 -KLRNLRRLNLSG-NKITELNMT--EGEWENLETLNLSR-NQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred -hhhhhheeccCc-Cceeeeecc--HHHHhhhhhhcccc-chhcc--chHHHhhhHHHHHHHhccCcccccCCc
Confidence 226778888877 356542211 11235678888887 45553 333333467788888888877766553
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.00 E-value=7e-06 Score=95.76 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=68.1
Q ss_pred ccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 007516 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (600)
Q Consensus 473 s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp 552 (600)
++|+.|++++|. ++. +...+ +++|+.|+|++|. ++. +... ..++|+.|+|++| .++... ..+. .
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~~l--~~sL~~L~Ls~N~-L~~--LP~~---lp~~L~~LdLs~N-~Lt~LP-~~l~---~ 388 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPASL--PPELQVLDVSKNQ-ITV--LPET---LPPTITTLDVSRN-ALTNLP-ENLP---A 388 (754)
T ss_pred ccceeccccCCc-ccc--CChhh--cCcccEEECCCCC-CCc--CChh---hcCCcCEEECCCC-cCCCCC-HhHH---H
Confidence 468888888774 322 12222 3688888888875 442 1111 1267899999886 454311 1121 2
Q ss_pred CccEEeecCCCCCCh--HHHHHHHhcCCCccEEEeeCCCCChhhhhc
Q 007516 553 RLCTLDLSNLYKLTD--FGIGYLANGCQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 553 ~L~~LdLs~C~~lTd--~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
.|+.|++++| +++. ..+..+...+++|..|+|.+|+++...++.
T Consensus 389 sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~ 434 (754)
T PRK15370 389 ALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQN 434 (754)
T ss_pred HHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHH
Confidence 5888888885 4542 235556666789999999999998877664
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.2e-05 Score=82.24 Aligned_cols=212 Identities=20% Similarity=0.156 Sum_probs=121.6
Q ss_pred EEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhc
Q 007516 365 EIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTS 444 (600)
Q Consensus 365 ~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~ 444 (600)
-|.+.+|---+...+..+...| ..++.|+|.++. +.|| +.+.++..++|.|+.|+|+. +.+.. .+..+...
T Consensus 49 llvln~~~id~~gd~~~~~~~~--~~v~elDL~~N~--iSdW---seI~~ile~lP~l~~LNls~-N~L~s-~I~~lp~p 119 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSV--TDVKELDLTGNL--ISDW---SEIGAILEQLPALTTLNLSC-NSLSS-DIKSLPLP 119 (418)
T ss_pred hheecCCCCCcchhHHHHHHHh--hhhhhhhcccch--hccH---HHHHHHHhcCccceEeeccC-CcCCC-ccccCccc
Confidence 4566666532333455566666 688888887775 4544 34556677888888888875 44331 12222112
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc----CchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ----SLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~----~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
..+|+.|-|.+. .+....+..+...+|. ++.|+++.+. ++++..+. .--+.+.+|.+.+|...-...+..+
T Consensus 120 ~~nl~~lVLNgT-~L~w~~~~s~l~~lP~-vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l 194 (418)
T KOG2982|consen 120 LKNLRVLVLNGT-GLSWTQSTSSLDDLPK-VTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKL 194 (418)
T ss_pred ccceEEEEEcCC-CCChhhhhhhhhcchh-hhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhH
Confidence 357888888775 4666666666666764 7777777762 22222111 1223455556555542222222222
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
. ...|++..+.+..|+ +.+..-..-+...|.+-.|+|+. .+|.+-+-..-..+++.|..|.++++++.|.
T Consensus 195 ~-r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 195 S-RIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred H-hhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCccccc
Confidence 2 233778888777764 33333333344567777777776 4565433333334588888888888888774
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.84 E-value=8.1e-06 Score=78.88 Aligned_cols=131 Identities=17% Similarity=0.193 Sum_probs=42.7
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHh
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~ 496 (600)
.++..+++|+|.| +.|+. +..+...+.+|+.|+|++|..-+-.++.. ++ .|+.|+++++. ++... .....
T Consensus 16 ~n~~~~~~L~L~~-n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~-~L~~L~L~~N~-I~~i~-~~l~~ 85 (175)
T PF14580_consen 16 NNPVKLRELNLRG-NQIST--IENLGATLDKLEVLDLSNNQITKLEGLPG----LP-RLKTLDLSNNR-ISSIS-EGLDK 85 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT--------T-T--EEE--SS----S-C-HHHHH
T ss_pred ccccccccccccc-ccccc--ccchhhhhcCCCEEECCCCCCccccCccC----hh-hhhhcccCCCC-CCccc-cchHH
Confidence 3455788888888 44543 33444446788888988885322234433 23 58888888884 43321 11224
Q ss_pred cCCCCCEEEccCCCCCCh-HHHHHHHHhcCCCccEEEecCCCCCChHH--HHHHHhcCCCccEEeecC
Q 007516 497 KLKHLEVLSVAGIETVTD-EFVRGFVYACGHNMKELILTDCVKLTDFS--LKVIAETCPRLCTLDLSN 561 (600)
Q Consensus 497 ~l~~Le~L~Ls~c~~ltd-~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~--L~~L~~~cp~L~~LdLs~ 561 (600)
.||+|+.|+++++. |.+ ..+..+ . .+++|+.|+|.+++ +++.. -..+...+|+|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L-~-~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPL-S-SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGG-G-G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCc-CCChHHhHHH-H-cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 67888888887775 433 222222 2 34788888888753 33211 123445778888887665
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=1e-05 Score=82.70 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=129.3
Q ss_pred CCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCCh-hhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 390 NLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISD-VGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 390 ~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD-~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
-+..|.+.+|.. | ....+..+...+..+++|+|.+ +.|+| ..+..|.+++|.|+.|+|++|+.-++.+- +.
T Consensus 46 a~ellvln~~~i---d--~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp 117 (418)
T KOG2982|consen 46 ALELLVLNGSII---D--NEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LP 117 (418)
T ss_pred chhhheecCCCC---C--cchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Cc
Confidence 455667777752 1 2233455667889999999999 66665 45778899999999999999864444322 21
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC----CCChHHHHHHHHhcCCCccEEEecCCCCCChHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE----TVTDEFVRGFVYACGHNMKELILTDCVKLTDFSL 544 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~----~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L 544 (600)
... .+|++|-|.+.. +........+..+|.++.|.++.+. .+.|+.... ..+.++.|++..|...-+..+
T Consensus 118 ~p~-~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~ 191 (418)
T KOG2982|consen 118 LPL-KNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNK 191 (418)
T ss_pred ccc-cceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHH
Confidence 111 379999998774 5554456678888888888876652 233433332 236788899999977667777
Q ss_pred HHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 545 KVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 545 ~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+....|++..+-+..|+--+. .-..-....|.+--|+|+.++|.+
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~~-s~ek~se~~p~~~~LnL~~~~ids 238 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKTE-SSEKGSEPFPSLSCLNLGANNIDS 238 (418)
T ss_pred HhHHhhcccchheeeecCcccch-hhcccCCCCCcchhhhhccccccc
Confidence 77888899999999999874332 222223346777788888888765
No 30
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=1.8e-05 Score=76.98 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=82.4
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPR 553 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~ 553 (600)
.++.++-+++. |...+ ...+..++.|+.|.+.+|..+.|..+..+.. ..++|+.|+|++|+.||+.++..|. .+++
T Consensus 102 ~IeaVDAsds~-I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~-~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSS-IMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLL-KLKN 177 (221)
T ss_pred eEEEEecCCch-HHHHH-HHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHH-Hhhh
Confidence 37888888774 44432 4678899999999999999999999976654 6699999999999999999999998 6999
Q ss_pred ccEEeecCCCCCChHHH--HHHHhcCCCccE
Q 007516 554 LCTLDLSNLYKLTDFGI--GYLANGCQAIQT 582 (600)
Q Consensus 554 L~~LdLs~C~~lTd~~l--~~L~~~c~~Lk~ 582 (600)
|+.|.|.+.+.+...+. ..|-..+|++..
T Consensus 178 Lr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 178 LRRLHLYDLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred hHHHHhcCchhhhchHHHHHHHHHhCcccce
Confidence 99999999777665433 233345666554
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.72 E-value=0.00054 Score=69.64 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=131.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcc--cCChhhHHHH------HhcCCCCcEEecCCCCCCC
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC--RISDVGFKAL------VTSAPALRSINLSQCSLLS 460 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~--~LtD~~l~~L------~~~~p~L~~L~Ls~C~~It 460 (600)
..+..++|+++.. ... -...+...+.+-.+|+..+++..+ +..|.-..++ .-.||.|+..+|+.|. ++
T Consensus 30 d~~~evdLSGNti--gtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-fg 105 (388)
T COG5238 30 DELVEVDLSGNTI--GTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-FG 105 (388)
T ss_pred cceeEEeccCCcc--cHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc-cC
Confidence 6899999999873 111 123445555667889988888744 2333332221 1259999999999984 44
Q ss_pred chh---HHHHHhhccccceEEEccCccCchhh---hHH---------HHHhcCCCCCEEEccCCCCC--ChHHHHHHHHh
Q 007516 461 STS---VDILADKLGSFIQELYINDCQSLNAM---LIL---------PALRKLKHLEVLSVAGIETV--TDEFVRGFVYA 523 (600)
Q Consensus 461 d~~---L~~L~~~~~s~L~~L~Ls~c~~l~d~---~i~---------~~l~~l~~Le~L~Ls~c~~l--td~~l~~Ll~~ 523 (600)
... +..+..+.. .|.+|.+++|. ++.. .|. ...+.-|.|++.....+..- +.......+..
T Consensus 106 ~~~~e~L~d~is~~t-~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 106 SEFPEELGDLISSST-DLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cccchHHHHHHhcCC-CceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 433 333333333 59999999995 3222 122 12345578999988776522 22223334445
Q ss_pred cCCCccEEEecCCCCCChHHHHHHH----hcCCCccEEeecCCCCCChHHHHHHHhcC---CCccEEEeeCCCCChhhhh
Q 007516 524 CGHNMKELILTDCVKLTDFSLKVIA----ETCPRLCTLDLSNLYKLTDFGIGYLANGC---QAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 524 ~~~sLk~L~Ls~C~~LtD~~L~~L~----~~cp~L~~LdLs~C~~lTd~~l~~L~~~c---~~Lk~L~Ls~c~isD~~i~ 596 (600)
+ .+|+.+.+.. +.|-..++..++ ..|.+|+.|||.. +-+|-.|-.+++..+ +.|++|.+..|-++..+..
T Consensus 184 h-~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqD-Ntft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 184 H-ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQD-NTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred h-cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccc-cchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 5 7899999987 467777666654 4789999999998 568888877777653 4689999999988877654
Q ss_pred c
Q 007516 597 D 597 (600)
Q Consensus 597 ~ 597 (600)
.
T Consensus 261 ~ 261 (388)
T COG5238 261 S 261 (388)
T ss_pred H
Confidence 3
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.72 E-value=9.8e-06 Score=93.20 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=62.6
Q ss_pred CcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCC
Q 007516 448 LRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHN 527 (600)
Q Consensus 448 L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~s 527 (600)
|+.|.+.+| .++|..+..+... .+|+.|+|+++. +... -...+.+++.|+.|+|+|+. ++.-.. . +. .+..
T Consensus 361 Lq~LylanN-~Ltd~c~p~l~~~--~hLKVLhLsyNr-L~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~-t-va-~~~~ 431 (1081)
T KOG0618|consen 361 LQELYLANN-HLTDSCFPVLVNF--KHLKVLHLSYNR-LNSF-PASKLRKLEELEELNLSGNK-LTTLPD-T-VA-NLGR 431 (1081)
T ss_pred HHHHHHhcC-cccccchhhhccc--cceeeeeecccc-cccC-CHHHHhchHHhHHHhcccch-hhhhhH-H-HH-hhhh
Confidence 445555554 3555555444322 246666666663 1110 01345566666666666654 221110 0 01 1134
Q ss_pred ccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCC
Q 007516 528 MKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNA 589 (600)
Q Consensus 528 Lk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~ 589 (600)
|+.|...++ .+.. +..++ .++.|+.+||++ ++++...+....- .++|++|||+||.
T Consensus 432 L~tL~ahsN-~l~~--fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSN-QLLS--FPELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCC-ceee--chhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence 444444331 2221 22333 467788888874 6676655544333 2678888888875
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.71 E-value=4.6e-05 Score=88.97 Aligned_cols=73 Identities=18% Similarity=0.195 Sum_probs=42.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.++|++|+|+++. ++. +... +++|+.|+|++|.. ..++. ...+|+.|+|++| .++..
T Consensus 241 p~~Lk~LdLs~N~-Lts-----LP~l--p~sL~~L~Ls~N~L--------~~Lp~---lp~~L~~L~Ls~N-~Lt~L--- 297 (788)
T PRK15387 241 PPELRTLEVSGNQ-LTS-----LPVL--PPGLLELSIFSNPL--------THLPA---LPSGLCKLWIFGN-QLTSL--- 297 (788)
T ss_pred CCCCcEEEecCCc-cCc-----ccCc--ccccceeeccCCch--------hhhhh---chhhcCEEECcCC-ccccc---
Confidence 3567778887763 442 1111 25778888777652 11221 2356788888873 45432
Q ss_pred HHHhcCCCCcEEecCCCC
Q 007516 440 ALVTSAPALRSINLSQCS 457 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~ 457 (600)
....++|+.|+|++|.
T Consensus 298 --P~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 298 --PVLPPGLQELSVSDNQ 313 (788)
T ss_pred --cccccccceeECCCCc
Confidence 1224678888888873
No 34
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=4.2e-05 Score=74.53 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=60.4
Q ss_pred CcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCC
Q 007516 448 LRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHN 527 (600)
Q Consensus 448 L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~s 527 (600)
++.++-+++ .|...|+..+- .++ .|+.|.+.+|..++|.++.....-.++|+.|+|++|..||+.++.-+.. +++
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~-~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~--lkn 177 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLR-SIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK--LKN 177 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccc-hhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH--hhh
Confidence 566666665 36677776665 444 3777777888777777666655666778888888888888777755432 367
Q ss_pred ccEEEecCCCCCCh
Q 007516 528 MKELILTDCVKLTD 541 (600)
Q Consensus 528 Lk~L~Ls~C~~LtD 541 (600)
|+.|.|.+-+.+..
T Consensus 178 Lr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 178 LRRLHLYDLPYVAN 191 (221)
T ss_pred hHHHHhcCchhhhc
Confidence 77777776555544
No 35
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.53 E-value=2.5e-05 Score=90.00 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=109.3
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCC--CCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHh
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCS--LLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~--~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~ 496 (600)
++.|+.|.+.+ +.++|..+..+. +.++|+.|+|++|. .+.+..+..+. .|++|+|+++. ++. +...+.
T Consensus 358 ~~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle-----~LeeL~LSGNk-L~~--Lp~tva 427 (1081)
T KOG0618|consen 358 HAALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLE-----ELEELNLSGNK-LTT--LPDTVA 427 (1081)
T ss_pred hHHHHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHHhchH-----HhHHHhcccch-hhh--hhHHHH
Confidence 45577788887 788998888775 47899999999983 34455554444 49999999995 443 446678
Q ss_pred cCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhc
Q 007516 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (600)
Q Consensus 497 ~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~ 576 (600)
.|+.|++|...++.-+. ++++.. ++.|+.+||+ |++++...+..... .|+|++|||+|.... ......+ ..
T Consensus 428 ~~~~L~tL~ahsN~l~~---fPe~~~--l~qL~~lDlS-~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l-~~d~~~l-~~ 498 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLS---FPELAQ--LPQLKVLDLS-CNNLSEVTLPEALP-SPNLKYLDLSGNTRL-VFDHKTL-KV 498 (1081)
T ss_pred hhhhhHHHhhcCCceee---chhhhh--cCcceEEecc-cchhhhhhhhhhCC-CcccceeeccCCccc-ccchhhh-HH
Confidence 89999999887765222 223322 4889999996 47888766665543 389999999986532 1112222 23
Q ss_pred CCCccEEEeeCCCCChhhhhcc
Q 007516 577 CQAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 577 c~~Lk~L~Ls~c~isD~~i~~f 598 (600)
|.++...++.-++.+|+....|
T Consensus 499 l~~l~~~~i~~~~~~d~~~n~~ 520 (1081)
T KOG0618|consen 499 LKSLSQMDITLNNTPDGNVNAF 520 (1081)
T ss_pred hhhhhheecccCCCCcccccee
Confidence 5667777777777777665444
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.50 E-value=0.00017 Score=84.42 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=94.0
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
.+++.|++++|. ++. +.... .++|+.|+|++|.. .. ++..+ ..+|+.|+|++ +.++.. ..
T Consensus 220 ~nL~~L~Ls~N~-Lts-----LP~~l-~~~L~~L~Ls~N~L--~~------LP~~l--~s~L~~L~Ls~-N~L~~L--P~ 279 (754)
T PRK15370 220 GNIKTLYANSNQ-LTS-----IPATL-PDTIQEMELSINRI--TE------LPERL--PSALQSLDLFH-NKISCL--PE 279 (754)
T ss_pred cCCCEEECCCCc-ccc-----CChhh-hccccEEECcCCcc--Cc------CChhH--hCCCCEEECcC-CccCcc--cc
Confidence 456667766664 331 11111 14667777776652 11 11111 13577777764 444421 11
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
..+++|+.|+|++|. ++. +...++.+|+.|+|++|. ++. +.. ...++|+.|++++|. ++. +..
T Consensus 280 --~l~~sL~~L~Ls~N~-Lt~-----LP~~lp~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~-Lt~--LP~- 342 (754)
T PRK15370 280 --NLPEELRYLSVYDNS-IRT-----LPAHLPSGITHLNVQSNS-LTA--LPE--TLPPGLKTLEAGENA-LTS--LPA- 342 (754)
T ss_pred --ccCCCCcEEECCCCc-ccc-----CcccchhhHHHHHhcCCc-ccc--CCc--cccccceeccccCCc-ccc--CCh-
Confidence 112467777777763 332 112223357777777664 221 111 123578888887775 432 111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
...++|+.|+|++| .++. +..- ..+.|+.|+|++| .++.-. ..+. ..|+.|++++|.++
T Consensus 343 --~l~~sL~~L~Ls~N-~L~~--LP~~--lp~~L~~LdLs~N-~Lt~LP-~~l~---~sL~~LdLs~N~L~ 401 (754)
T PRK15370 343 --SLPPELQVLDVSKN-QITV--LPET--LPPTITTLDVSRN-ALTNLP-ENLP---AALQIMQASRNNLV 401 (754)
T ss_pred --hhcCcccEEECCCC-CCCc--CChh--hcCCcCEEECCCC-cCCCCC-HhHH---HHHHHHhhccCCcc
Confidence 12368888888886 4542 1111 1357888888886 454211 1121 25888888888776
No 37
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.49 E-value=3.3e-05 Score=85.83 Aligned_cols=198 Identities=28% Similarity=0.352 Sum_probs=112.2
Q ss_pred CceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCC----CCcEEecCCCCCCCchhHHH
Q 007516 391 LTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAP----ALRSINLSQCSLLSSTSVDI 466 (600)
Q Consensus 391 L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p----~L~~L~Ls~C~~Itd~~L~~ 466 (600)
|..|.|.+|. +.+. ....+......++.|..|++++ +.++|.+...+...++ .|+.|++..|. ++..+...
T Consensus 89 l~~L~L~~~~--l~~~-~~~~l~~~l~t~~~L~~L~l~~-n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR--LGDR-GAEELAQALKTLPTLGQLDLSG-NNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc--cccc-hHHHHHHHhcccccHhHhhccc-CCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHH
Confidence 5555666654 2221 2233444555666777777777 5566777666665433 35566666663 66666555
Q ss_pred HHhhc--cccceEEEccCccCchhh--hHHHHHh----cCCCCCEEEccCCCCCChHHHHHHHH--hcCCC-ccEEEecC
Q 007516 467 LADKL--GSFIQELYINDCQSLNAM--LILPALR----KLKHLEVLSVAGIETVTDEFVRGFVY--ACGHN-MKELILTD 535 (600)
Q Consensus 467 L~~~~--~s~L~~L~Ls~c~~l~d~--~i~~~l~----~l~~Le~L~Ls~c~~ltd~~l~~Ll~--~~~~s-Lk~L~Ls~ 535 (600)
++..+ ...|+.|+++.|..+... .+...+. ...++++|.+.+|. +++.....+.. ...++ +..|++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh
Confidence 55443 223666666666543221 1122233 34567777777776 55544332221 12233 55677765
Q ss_pred CCCCChHHHHHHHhcCC----CccEEeecCCCCCChHHHHHHHh---cCCCccEEEeeCCCCChhhhh
Q 007516 536 CVKLTDFSLKVIAETCP----RLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 536 C~~LtD~~L~~L~~~cp----~L~~LdLs~C~~lTd~~l~~L~~---~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
+.+.|.++..+...++ .|+.|++..| .|++.+...++. .|+.|++|.++.|++++...+
T Consensus 243 -n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~ 308 (478)
T KOG4308|consen 243 -NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVE 308 (478)
T ss_pred -cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHHH
Confidence 4677776666654433 4477777775 566666665554 466777888888877776643
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00012 Score=79.33 Aligned_cols=134 Identities=21% Similarity=0.359 Sum_probs=59.3
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
..++.|++++|. ++. +.. . .++|++|.+++|..+ . .++..+ .++|+.|.|++|..+..
T Consensus 52 ~~l~~L~Is~c~-L~s-----LP~-L-P~sLtsL~Lsnc~nL-t------sLP~~L--P~nLe~L~Ls~Cs~L~s----- 109 (426)
T PRK15386 52 RASGRLYIKDCD-IES-----LPV-L-PNELTEITIENCNNL-T------TLPGSI--PEGLEKLTVCHCPEISG----- 109 (426)
T ss_pred cCCCEEEeCCCC-Ccc-----cCC-C-CCCCcEEEccCCCCc-c------cCCchh--hhhhhheEccCcccccc-----
Confidence 455667777663 432 221 1 135677777666541 0 011111 23566666666654431
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcC-CCCCEEEccCCCCCChHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL-KHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l-~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
+ .++|+.|+|.++. ... + ..+|++|+.|.+.++.......+. ..+ ++|++|++++|..+.
T Consensus 110 L---P~sLe~L~L~~n~-~~~--L----~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~------ 170 (426)
T PRK15386 110 L---PESVRSLEIKGSA-TDS--I----KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII------ 170 (426)
T ss_pred c---ccccceEEeCCCC-Ccc--c----ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc------
Confidence 1 2356666665321 111 1 134455666666433211100000 112 356666666665331
Q ss_pred HHHhcCCCccEEEecC
Q 007516 520 FVYACGHNMKELILTD 535 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~ 535 (600)
+......+|+.|.++.
T Consensus 171 LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 171 LPEKLPESLQSITLHI 186 (426)
T ss_pred CcccccccCcEEEecc
Confidence 0011124666666654
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.03 E-value=0.00078 Score=73.12 Aligned_cols=169 Identities=16% Similarity=0.240 Sum_probs=98.1
Q ss_pred hCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhH
Q 007516 385 SCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSV 464 (600)
Q Consensus 385 ~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L 464 (600)
.| ++++.|++++|.. . .++ .--++|++|.+++|..++... ..+ .++|+.|+|++|..+.
T Consensus 50 ~~--~~l~~L~Is~c~L--~------sLP---~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~---- 108 (426)
T PRK15386 50 EA--RASGRLYIKDCDI--E------SLP---VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS---- 108 (426)
T ss_pred Hh--cCCCEEEeCCCCC--c------ccC---CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc----
Confidence 46 7999999999952 1 111 122369999999998874322 112 3589999999996543
Q ss_pred HHHHhhccccceEEEccCccCchhhhHHHHHhcCC-CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHH
Q 007516 465 DILADKLGSFIQELYINDCQSLNAMLILPALRKLK-HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFS 543 (600)
Q Consensus 465 ~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~-~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~ 543 (600)
.+|..|+.|+|.++. .. .+..+| +|+.|.+.++.......+... ..++|+.|++++|..+.
T Consensus 109 -----sLP~sLe~L~L~~n~-~~------~L~~LPssLk~L~I~~~n~~~~~~lp~~---LPsSLk~L~Is~c~~i~--- 170 (426)
T PRK15386 109 -----GLPESVRSLEIKGSA-TD------SIKNVPNGLTSLSINSYNPENQARIDNL---ISPSLKTLSLTGCSNII--- 170 (426)
T ss_pred -----ccccccceEEeCCCC-Cc------ccccCcchHhheeccccccccccccccc---cCCcccEEEecCCCccc---
Confidence 345679999987542 21 123443 688888754332211111111 22689999999997552
Q ss_pred HHHHHh-cCCCccEEeecCCCCCChH-HHHHHHhcCCCccEEEeeCC-CCChhhhhccC
Q 007516 544 LKVIAE-TCPRLCTLDLSNLYKLTDF-GIGYLANGCQAIQTLKLCRN-AFRFVFHRDFG 599 (600)
Q Consensus 544 L~~L~~-~cp~L~~LdLs~C~~lTd~-~l~~L~~~c~~Lk~L~Ls~c-~isD~~i~~fg 599 (600)
+.. -..+|+.|.++.+...+-. ....+. +++ .|++.+| .+..+++.+-|
T Consensus 171 ---LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP---~nl-~L~f~n~lkL~~~~f~d~~ 222 (426)
T PRK15386 171 ---LPEKLPESLQSITLHIEQKTTWNISFEGFP---DGL-DIDLQNSVLLSPDVFKDKN 222 (426)
T ss_pred ---CcccccccCcEEEecccccccccCcccccc---ccc-EechhhhcccCHHHhhccc
Confidence 111 1248999999874211100 011111 245 6777666 55555555444
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.91 E-value=0.00068 Score=69.74 Aligned_cols=126 Identities=21% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCcEEecCCCCCCCc--hhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHh
Q 007516 446 PALRSINLSQCSLLSS--TSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA 523 (600)
Q Consensus 446 p~L~~L~Ls~C~~Itd--~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~ 523 (600)
..|+.|+|++|. |+. .++. ..| .++.|+++++....- ..++.+++|+.|+|+++. ++. +..+-.
T Consensus 284 q~LtelDLS~N~-I~~iDESvK----L~P-kir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~-Ls~--~~Gwh~- 349 (490)
T KOG1259|consen 284 QELTELDLSGNL-ITQIDESVK----LAP-KLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNL-LAE--CVGWHL- 349 (490)
T ss_pred hhhhhccccccc-hhhhhhhhh----hcc-ceeEEeccccceeee----hhhhhcccceEeecccch-hHh--hhhhHh-
Confidence 458888888873 432 2232 234 488888888854332 347788888999988875 321 112211
Q ss_pred cCCCccEEEecCCCCCCh-HHHHHHHhcCCCccEEeecCCCCCCh-HHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 524 CGHNMKELILTDCVKLTD-FSLKVIAETCPRLCTLDLSNLYKLTD-FGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 524 ~~~sLk~L~Ls~C~~LtD-~~L~~L~~~cp~L~~LdLs~C~~lTd-~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.+.+++.|.|+.+ .|.+ .++.. +-+|..||+++ ++|.. +.+..+. .+|-|+.|.|.+|++..
T Consensus 350 KLGNIKtL~La~N-~iE~LSGL~K----LYSLvnLDl~~-N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLSGLRK----LYSLVNLDLSS-NQIEELDEVNHIG-NLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhcCEeeeehhhh-hHhhhhhhHh----hhhheeccccc-cchhhHHHhcccc-cccHHHHHhhcCCCccc
Confidence 2367888888874 3432 23332 34688999998 45643 2333333 48889999999998764
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.79 E-value=0.00018 Score=81.11 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=15.2
Q ss_pred HhhhhCCCCcEEEecCCCCCCHHHHHHH
Q 007516 355 LNLLFSGSPTEIRLRDCSWLTEQEFTKA 382 (600)
Q Consensus 355 l~l~~~~~L~~L~L~~C~~Ltd~~L~~L 382 (600)
+.+|-...++.|.|++|.--+-.|+..|
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHH
Confidence 3444455666677777653334444444
No 42
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.74 E-value=0.00039 Score=77.41 Aligned_cols=171 Identities=26% Similarity=0.342 Sum_probs=124.5
Q ss_pred CCEEEcCCcccCChhhHHHHHhc---CCCCcEEecCCCCCCCchhHHHHHhhcc---ccceEEEccCccCchhh---hHH
Q 007516 422 LTTLSICGACRISDVGFKALVTS---APALRSINLSQCSLLSSTSVDILADKLG---SFIQELYINDCQSLNAM---LIL 492 (600)
Q Consensus 422 L~~L~Ls~c~~LtD~~l~~L~~~---~p~L~~L~Ls~C~~Itd~~L~~L~~~~~---s~L~~L~Ls~c~~l~d~---~i~ 492 (600)
|..|.|.+ +.+.+.+...++.. .++|..|++++|. +++.++..+...++ ..|+.|.+..|. +++. .+.
T Consensus 89 l~~L~L~~-~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLAN-NRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLA 165 (478)
T ss_pred HHHhhhhh-CccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHH
Confidence 77888888 55777787777654 5789999999984 78999988887653 357888998885 3332 345
Q ss_pred HHHhcCCCCCEEEccCCCCCChHHHHHHH---Hh---cCCCccEEEecCCCCCChHHHHHHHhcC---CC-ccEEeecCC
Q 007516 493 PALRKLKHLEVLSVAGIETVTDEFVRGFV---YA---CGHNMKELILTDCVKLTDFSLKVIAETC---PR-LCTLDLSNL 562 (600)
Q Consensus 493 ~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll---~~---~~~sLk~L~Ls~C~~LtD~~L~~L~~~c---p~-L~~LdLs~C 562 (600)
..+..+.+|+.|+++.|..+ +.+...+. .. ...++++|.|++| .++......+.... +. +..|++.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~- 242 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLAS- 242 (478)
T ss_pred HHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHh-
Confidence 56667889999999888744 43332222 21 2368999999998 57776666655433 33 56688886
Q ss_pred CCCChHHHHHHHhcCC----CccEEEeeCCCCChhhhhcc
Q 007516 563 YKLTDFGIGYLANGCQ----AIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 563 ~~lTd~~l~~L~~~c~----~Lk~L~Ls~c~isD~~i~~f 598 (600)
+.+.|.++..+...++ .|+.++++.|+|++...+++
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 6899999988877544 56999999999999887654
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.73 E-value=0.00048 Score=70.83 Aligned_cols=182 Identities=19% Similarity=0.147 Sum_probs=107.5
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHH----------------HHHHhcCCCCC
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLST----------------LASSLNSLPSL 422 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~----------------L~~~~~~l~~L 422 (600)
+..+++.+.++.|.- ..+..+...- |.|+++.+.+....+...+.... +...+..-..|
T Consensus 212 ~f~~l~~~~~s~~~~---~~i~~~~~~k--ptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 212 AFRNLKTLKFSALST---ENIVDIELLK--PTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred Hhhhhheeeeeccch---hheeceeecC--chhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 456778899999862 1222232222 78999888766421111111100 00111223468
Q ss_pred CEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCC
Q 007516 423 TTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLE 502 (600)
Q Consensus 423 ~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le 502 (600)
++|+|++ +.|+... .-.+-.|.++.|++++|...+-..+.. ++ +|+.|+|+++.-..-. ..-.++-+++
T Consensus 287 telDLS~-N~I~~iD--ESvKL~Pkir~L~lS~N~i~~v~nLa~----L~-~L~~LDLS~N~Ls~~~---Gwh~KLGNIK 355 (490)
T KOG1259|consen 287 TELDLSG-NLITQID--ESVKLAPKLRRLILSQNRIRTVQNLAE----LP-QLQLLDLSGNLLAECV---GWHLKLGNIK 355 (490)
T ss_pred hhccccc-cchhhhh--hhhhhccceeEEeccccceeeehhhhh----cc-cceEeecccchhHhhh---hhHhhhcCEe
Confidence 8999998 5554322 222346999999999986443344433 33 5999999998522222 2234677889
Q ss_pred EEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCCh-HHHHHHHhcCCCccEEeecCCC
Q 007516 503 VLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTD-FSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 503 ~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD-~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
+|.|+++..-+-.++..+ -+|..|+++++ +|.. ..+..|. .+|.|+.|.|.+.+
T Consensus 356 tL~La~N~iE~LSGL~KL-----YSLvnLDl~~N-~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 356 TLKLAQNKIETLSGLRKL-----YSLVNLDLSSN-QIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred eeehhhhhHhhhhhhHhh-----hhheecccccc-chhhHHHhcccc-cccHHHHHhhcCCC
Confidence 999887652111222222 57999999985 5543 3444555 78999999998854
No 44
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.69 E-value=0.0017 Score=42.42 Aligned_cols=25 Identities=48% Similarity=0.711 Sum_probs=15.9
Q ss_pred CCCccEEeecCCCCCChHHHHHHHh
Q 007516 551 CPRLCTLDLSNLYKLTDFGIGYLAN 575 (600)
Q Consensus 551 cp~L~~LdLs~C~~lTd~~l~~L~~ 575 (600)
|++|+.|+|++|.+|||.++..++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5666666666666666666666553
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.50 E-value=0.0041 Score=74.22 Aligned_cols=21 Identities=5% Similarity=0.067 Sum_probs=15.7
Q ss_pred cCCCccEEEeeCCCCChhhhh
Q 007516 576 GCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 576 ~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
.+.+|+.|.+.+|.+++..+.
T Consensus 715 ~l~~L~~L~i~~~~~~e~~~~ 735 (889)
T KOG4658|consen 715 SLGNLEELSILDCGISEIVIE 735 (889)
T ss_pred cccCcceEEEEcCCCchhhcc
Confidence 366788888888888775543
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.48 E-value=0.0015 Score=77.91 Aligned_cols=105 Identities=30% Similarity=0.301 Sum_probs=44.9
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
|.|+.|+|++|.. ...++..++.+-+|+.|+|++ ..|.. +..-...+..|.+|++..+..+... ..+.
T Consensus 571 ~~LrVLDLs~~~~-------l~~LP~~I~~Li~LryL~L~~-t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~ 638 (889)
T KOG4658|consen 571 PLLRVLDLSGNSS-------LSKLPSSIGELVHLRYLDLSD-TGISH--LPSGLGNLKKLIYLNLEVTGRLESI--PGIL 638 (889)
T ss_pred cceEEEECCCCCc-------cCcCChHHhhhhhhhcccccC-CCccc--cchHHHHHHhhheeccccccccccc--cchh
Confidence 5666666665542 122334445555666666665 33431 1111122345666666554322211 1111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEc
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSV 506 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~L 506 (600)
..++ +|++|.+-.-..-.+......+..+.+|+.|.+
T Consensus 639 ~~L~-~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 639 LELQ-SLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcc-cccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 1122 366666554331222223333444555555444
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.42 E-value=0.0005 Score=69.48 Aligned_cols=38 Identities=34% Similarity=0.529 Sum_probs=16.7
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
+++|+.|.++.++.--..++..++..||+|++|++++|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N 101 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN 101 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence 34444555444322223334444444455555555444
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.26 E-value=0.0021 Score=68.39 Aligned_cols=89 Identities=27% Similarity=0.280 Sum_probs=39.1
Q ss_pred HhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHH
Q 007516 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLA 574 (600)
Q Consensus 495 l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~ 574 (600)
+..+++|++|+|+++. |+...-..| . -...|++|.|..+ +|.... ..++..+..|+.|+|++ ++||-..-.+ +
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e-~~a~l~eL~L~~N-~l~~v~-~~~f~~ls~L~tL~L~~-N~it~~~~~a-F 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-E-GAAELQELYLTRN-KLEFVS-SGMFQGLSGLKTLSLYD-NQITTVAPGA-F 342 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-c-chhhhhhhhcCcc-hHHHHH-HHhhhccccceeeeecC-CeeEEEeccc-c
Confidence 4555566666665554 332111111 1 1134555555442 222111 12234556666666666 4555322111 1
Q ss_pred hcCCCccEEEeeCCCC
Q 007516 575 NGCQAIQTLKLCRNAF 590 (600)
Q Consensus 575 ~~c~~Lk~L~Ls~c~i 590 (600)
.....|.+|+|-.|++
T Consensus 343 ~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 343 QTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccceeeeeehccCcc
Confidence 2234566666655544
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.16 E-value=0.00076 Score=53.13 Aligned_cols=61 Identities=31% Similarity=0.325 Sum_probs=38.1
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCC
Q 007516 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (600)
Q Consensus 526 ~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~i 590 (600)
|+|+.|+|++| .++...- .....+++|+.|+|+++ .++... .....++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence 46777888776 5553221 22336778888888864 455322 22345688888888888864
No 50
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.04 E-value=0.017 Score=61.96 Aligned_cols=94 Identities=22% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCC--Ch-----HHHHHH--------------Hhc
Q 007516 492 LPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKL--TD-----FSLKVI--------------AET 550 (600)
Q Consensus 492 ~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~L--tD-----~~L~~L--------------~~~ 550 (600)
...++.+++|..|+++++. +.+-... +. . .-.|+.|+|+....- -. ..++.+ ..+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~-Ln~LP~e-~~-~-lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNL-LNDLPEE-MG-S-LVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred hHHHHhhhcceeeecccch-hhhcchh-hh-h-hhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 3457788899999998765 4442221 11 1 145888888874210 00 001111 135
Q ss_pred CCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 551 CPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 551 cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+.+|..|||.+.. + ..+..+..+|.+|++|+|+||+|+.
T Consensus 504 m~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 504 MRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred hhhcceeccCCCc-h--hhCChhhccccceeEEEecCCccCC
Confidence 6789999999842 2 2356667789999999999999973
No 51
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.04 E-value=0.0022 Score=68.32 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCCcEEEecCC--CCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 361 GSPTEIRLRDC--SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 361 ~~L~~L~L~~C--~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
+...+|.|... +.|.+..|..+ ++|+.|+|+.+.. . ..-+..+..+++|..|-+.+.++|++..-
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l------~~LRrLdLS~N~I--s-----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL------HRLRRLDLSKNNI--S-----FIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEeccCCcccCChhhccch------hhhceecccccch--h-----hcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 34455666554 34444444433 6888888888762 1 11122335567777777777777776543
Q ss_pred HHHHhcCCCCcEEecCCC
Q 007516 439 KALVTSAPALRSINLSQC 456 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C 456 (600)
.. +.++..|+.|.+.-|
T Consensus 134 ~~-F~gL~slqrLllNan 150 (498)
T KOG4237|consen 134 GA-FGGLSSLQRLLLNAN 150 (498)
T ss_pred hH-hhhHHHHHHHhcChh
Confidence 33 344667777777665
No 52
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.91 E-value=0.0072 Score=39.45 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=19.8
Q ss_pred CCCccEEEecCCCCCChHHHHHHHh
Q 007516 525 GHNMKELILTDCVKLTDFSLKVIAE 549 (600)
Q Consensus 525 ~~sLk~L~Ls~C~~LtD~~L~~L~~ 549 (600)
+++|++|+|++|.+|||.++..|+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 3678888888888888888887763
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.67 E-value=0.0022 Score=72.69 Aligned_cols=174 Identities=21% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcC----------CCCcEEecCCCC
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSA----------PALRSINLSQCS 457 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~----------p~L~~L~Ls~C~ 457 (600)
|..|++|.|.+|.. ....++..+- .+|++|- |.+-. .++..++..| -.|...++++|.
T Consensus 108 F~sLr~LElrg~~L-----~~~~GL~~lr---~qLe~LI---C~~Sl-~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~ 175 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDL-----STAKGLQELR---HQLEKLI---CHNSL-DALRHVFASCGGDISNSPVWNKLATASFSYNR 175 (1096)
T ss_pred ccceeeEEecCcch-----hhhhhhHHHH---Hhhhhhh---hhccH-HHHHHHHHHhccccccchhhhhHhhhhcchhh
Confidence 47899999999973 1223333332 2444443 22222 2333333322 236666666664
Q ss_pred CCC-chhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCC
Q 007516 458 LLS-STSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDC 536 (600)
Q Consensus 458 ~It-d~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C 536 (600)
.+. |.++.-+ | .|++|+|++|. +++. ..+..|++|++|+|+.+. ++- +..+. ..+..|..|+|.++
T Consensus 176 L~~mD~SLqll----~-ale~LnLshNk-~~~v---~~Lr~l~~LkhLDlsyN~-L~~--vp~l~-~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 176 LVLMDESLQLL----P-ALESLNLSHNK-FTKV---DNLRRLPKLKHLDLSYNC-LRH--VPQLS-MVGCKLQLLNLRNN 242 (1096)
T ss_pred HHhHHHHHHHH----H-Hhhhhccchhh-hhhh---HHHHhcccccccccccch-hcc--ccccc-hhhhhheeeeeccc
Confidence 322 3333322 2 49999999996 3332 478899999999998765 221 11221 11235999999884
Q ss_pred CCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 537 VKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 537 ~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
.++ .+..|. ++.+|+.||+++ +-|.+..--.....+..|+.|.|.||++-
T Consensus 243 -~l~--tL~gie-~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 -ALT--TLRGIE-NLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -HHH--hhhhHH-hhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 443 244444 678899999997 34544332222233556999999999864
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.36 E-value=0.02 Score=42.44 Aligned_cols=38 Identities=32% Similarity=0.333 Sum_probs=23.5
Q ss_pred CCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 552 PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 552 p~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
++|++|+|+++ +|++ +......|++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 46777777774 5665 33323457777777777777775
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.27 E-value=0.014 Score=63.06 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=17.2
Q ss_pred cCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 550 ~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
.++.|+.|+++++ .+++... .....+|+.|+++++.++
T Consensus 253 ~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 253 NLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccceeccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 3444555555542 3433221 222445555555555444
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.22 E-value=0.0026 Score=64.43 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=65.5
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCCh-HHHHHHHhcCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTD-FSLKVIAETCP 552 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD-~~L~~L~~~cp 552 (600)
.|+.|++.++...+- ..+..+++|+.|.++.+..--..++..++..+ |+|++|+|+++ .|.+ ..+..+. .+.
T Consensus 44 ~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~-P~l~~l~ls~N-ki~~lstl~pl~-~l~ 116 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKA-PNLKVLNLSGN-KIKDLSTLRPLK-ELE 116 (260)
T ss_pred chhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccceehhhhC-CceeEEeecCC-ccccccccchhh-hhc
Confidence 477777777743332 34567889999999776322223343344444 99999999994 6664 2233333 577
Q ss_pred CccEEeecCCCCC--ChHHHHHHHhcCCCccEEEee
Q 007516 553 RLCTLDLSNLYKL--TDFGIGYLANGCQAIQTLKLC 586 (600)
Q Consensus 553 ~L~~LdLs~C~~l--Td~~l~~L~~~c~~Lk~L~Ls 586 (600)
+|..|++.+|.-. ++.- ..++.-+++|++|+-.
T Consensus 117 nL~~Ldl~n~~~~~l~dyr-e~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYR-EKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCccccccHH-HHHHHHhhhhcccccc
Confidence 8999999998532 2221 3444457788877643
No 57
>PLN03150 hypothetical protein; Provisional
Probab=95.06 E-value=0.047 Score=63.15 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=27.9
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDC 536 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C 536 (600)
+|+.|+|++|..... +...+..+++|+.|+|+++. ++...- ..+. .+++|+.|+|++|
T Consensus 443 ~L~~L~Ls~N~l~g~--iP~~~~~l~~L~~LdLs~N~-lsg~iP-~~l~-~L~~L~~L~Ls~N 500 (623)
T PLN03150 443 HLQSINLSGNSIRGN--IPPSLGSITSLEVLDLSYNS-FNGSIP-ESLG-QLTSLRILNLNGN 500 (623)
T ss_pred CCCEEECCCCcccCc--CChHHhCCCCCCEEECCCCC-CCCCCc-hHHh-cCCCCCEEECcCC
Confidence 366666666532211 23345566666666666654 332111 1111 2356666666654
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.83 E-value=0.0042 Score=48.88 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=16.8
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
..+++|+.|+|++ +.++...... +..+++|++|+|++|
T Consensus 22 ~~l~~L~~L~l~~-N~l~~i~~~~-f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 22 SNLPNLETLDLSN-NNLTSIPPDA-FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTGTTESEEEETS-SSESEEETTT-TTTSTTESEEEETSS
T ss_pred cCCCCCCEeEccC-CccCccCHHH-HcCCCCCCEEeCcCC
Confidence 4455555555554 3333222211 223455555555554
No 59
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.26 E-value=0.00068 Score=64.77 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=79.8
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCC-CCchhHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSL-LSSTSVDIL 467 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~-Itd~~L~~L 467 (600)
.+++.|.|+.+... +... -+..+.+|+.|++.+ ++|.+-.. -...+|+|+.|+++-+.. +...|+-.
T Consensus 33 s~ITrLtLSHNKl~----~vpp----nia~l~nlevln~~n-nqie~lp~--~issl~klr~lnvgmnrl~~lprgfgs- 100 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT----VVPP----NIAELKNLEVLNLSN-NQIEELPT--SISSLPKLRILNVGMNRLNILPRGFGS- 100 (264)
T ss_pred hhhhhhhcccCcee----ecCC----cHHHhhhhhhhhccc-chhhhcCh--hhhhchhhhheecchhhhhcCccccCC-
Confidence 57788888887631 1111 223467888888886 55654332 223478888888875531 22233332
Q ss_pred HhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 007516 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L 547 (600)
+| -|+.|+|+++. +....+...+..+..|+.|+|+.+. + +.+..-+. .+++|+.|.+....-++ +..-
T Consensus 101 ---~p-~levldltynn-l~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg-~lt~lqil~lrdndll~---lpke 168 (264)
T KOG0617|consen 101 ---FP-ALEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVG-KLTNLQILSLRDNDLLS---LPKE 168 (264)
T ss_pred ---Cc-hhhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhh-hhcceeEEeeccCchhh---CcHH
Confidence 23 48888887763 3333333344455666777765543 1 11111111 23677777777653332 2221
Q ss_pred HhcCCCccEEeecC
Q 007516 548 AETCPRLCTLDLSN 561 (600)
Q Consensus 548 ~~~cp~L~~LdLs~ 561 (600)
...+..|+.|+|.+
T Consensus 169 ig~lt~lrelhiqg 182 (264)
T KOG0617|consen 169 IGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHHHhccc
Confidence 22455677777777
No 60
>PLN03150 hypothetical protein; Provisional
Probab=93.71 E-value=0.12 Score=59.97 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=52.1
Q ss_pred CceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhh
Q 007516 391 LTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADK 470 (600)
Q Consensus 391 L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~ 470 (600)
++.|+|+++.. ...+...+..+++|+.|+|+++ .++...... ...+++|+.|+|++|. ++...-..+. .
T Consensus 420 v~~L~L~~n~L-------~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~-~~~l~~L~~LdLs~N~-lsg~iP~~l~-~ 488 (623)
T PLN03150 420 IDGLGLDNQGL-------RGFIPNDISKLRHLQSINLSGN-SIRGNIPPS-LGSITSLEVLDLSYNS-FNGSIPESLG-Q 488 (623)
T ss_pred EEEEECCCCCc-------cccCCHHHhCCCCCCEEECCCC-cccCcCChH-HhCCCCCCEEECCCCC-CCCCCchHHh-c
Confidence 56667766642 1112233456677777777763 333221112 2346777777777763 3322112222 3
Q ss_pred ccccceEEEccCccCchhhhHHHHHhc-CCCCCEEEccCCC
Q 007516 471 LGSFIQELYINDCQSLNAMLILPALRK-LKHLEVLSVAGIE 510 (600)
Q Consensus 471 ~~s~L~~L~Ls~c~~l~d~~i~~~l~~-l~~Le~L~Ls~c~ 510 (600)
++ +|+.|+|++|..... +...+.. +.++..+++.++.
T Consensus 489 L~-~L~~L~Ls~N~l~g~--iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 LT-SLRILNLNGNSLSGR--VPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CC-CCCEEECcCCccccc--CChHHhhccccCceEEecCCc
Confidence 33 477777777642211 2222222 2355666666554
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=0.024 Score=58.26 Aligned_cols=112 Identities=15% Similarity=0.224 Sum_probs=64.4
Q ss_pred CCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCCh-HHHHHHHHhc
Q 007516 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD-EFVRGFVYAC 524 (600)
Q Consensus 446 p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd-~~l~~Ll~~~ 524 (600)
.+.+.|++.+| .++|..+ +...| .|+.|.|+-|. |+. +..+..|++|+.|+|..+. |.+ +.+ .++. .
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kMp-~lEVLsLSvNk-Iss---L~pl~rCtrLkElYLRkN~-I~sldEL-~YLk-n 86 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKMP-LLEVLSLSVNK-ISS---LAPLQRCTRLKELYLRKNC-IESLDEL-EYLK-N 86 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhcc-cceeEEeeccc-ccc---chhHHHHHHHHHHHHHhcc-cccHHHH-HHHh-c
Confidence 45677888887 4777654 34445 48888887664 332 3566778888888887665 443 223 2333 3
Q ss_pred CCCccEEEecCCCCCChHH---HHHHHhcCCCccEEeecCCCCCChHHHHH
Q 007516 525 GHNMKELILTDCVKLTDFS---LKVIAETCPRLCTLDLSNLYKLTDFGIGY 572 (600)
Q Consensus 525 ~~sLk~L~Ls~C~~LtD~~---L~~L~~~cp~L~~LdLs~C~~lTd~~l~~ 572 (600)
+|+|+.|-|..++-....+ =..+...+|+|+.||=-. +|.+.+..
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~---VteeEle~ 134 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP---VTEEELEE 134 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc---ccHHHHHH
Confidence 4777777776533222211 122445677888776433 56555543
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=93.43 E-value=0.05 Score=58.78 Aligned_cols=146 Identities=26% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHh
Q 007516 390 NLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILAD 469 (600)
Q Consensus 390 ~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~ 469 (600)
+|+.|+++.... ..+......+++|+.|++++ +.+++...... ..+.|+.|+++++. +.+.....
T Consensus 141 nL~~L~l~~N~i--------~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~--~~~~L~~L~ls~N~-i~~l~~~~--- 205 (394)
T COG4886 141 NLKELDLSDNKI--------ESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLS--NLSNLNNLDLSGNK-ISDLPPEI--- 205 (394)
T ss_pred hcccccccccch--------hhhhhhhhccccccccccCC-chhhhhhhhhh--hhhhhhheeccCCc-cccCchhh---
Confidence 566666666542 11112345566677776666 34444332211 24666666666653 33322110
Q ss_pred hccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHh
Q 007516 470 KLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAE 549 (600)
Q Consensus 470 ~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~ 549 (600)
..+..|++|.++++..+.. ...+..+.++..|.+.+.. +.+. ...+. ..++|+.|+++++ .+++..- ..
T Consensus 206 ~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~-~~~~--~~~~~-~l~~l~~L~~s~n-~i~~i~~---~~ 274 (394)
T COG4886 206 ELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNK-LEDL--PESIG-NLSNLETLDLSNN-QISSISS---LG 274 (394)
T ss_pred hhhhhhhhhhhcCCcceec---chhhhhcccccccccCCce-eeec--cchhc-cccccceeccccc-ccccccc---cc
Confidence 0112366666666642222 2334445555555544433 2210 01111 1245666666653 4443222 22
Q ss_pred cCCCccEEeecC
Q 007516 550 TCPRLCTLDLSN 561 (600)
Q Consensus 550 ~cp~L~~LdLs~ 561 (600)
...+|+.|++++
T Consensus 275 ~~~~l~~L~~s~ 286 (394)
T COG4886 275 SLTNLRELDLSG 286 (394)
T ss_pred ccCccCEEeccC
Confidence 445666666665
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.40 E-value=0.022 Score=58.48 Aligned_cols=78 Identities=22% Similarity=0.255 Sum_probs=35.9
Q ss_pred cEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHh
Q 007516 364 TEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVT 443 (600)
Q Consensus 364 ~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~ 443 (600)
+.|+++||. ++|-. |+..+ +.|++|.|+-+.. ..+. .+..|..|++|.|.. +.|.+..-.....
T Consensus 22 kKLNcwg~~-L~DIs---ic~kM--p~lEVLsLSvNkI--------ssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLk 85 (388)
T KOG2123|consen 22 KKLNCWGCG-LDDIS---ICEKM--PLLEVLSLSVNKI--------SSLA-PLQRCTRLKELYLRK-NCIESLDELEYLK 85 (388)
T ss_pred hhhcccCCC-ccHHH---HHHhc--ccceeEEeecccc--------ccch-hHHHHHHHHHHHHHh-cccccHHHHHHHh
Confidence 445556554 44422 22222 5555555555442 1111 224455555555554 3444444333334
Q ss_pred cCCCCcEEecCCCC
Q 007516 444 SAPALRSINLSQCS 457 (600)
Q Consensus 444 ~~p~L~~L~Ls~C~ 457 (600)
++|+|+.|.|..|+
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 45555555555443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.22 E-value=0.048 Score=53.67 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcC
Q 007516 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACG 525 (600)
Q Consensus 446 p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~ 525 (600)
-+...++|+.+.......+. +++ .|++|.|+++. |+... ......+++|.+|.|.++.-..-..+..+ ..|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp----~l~-rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pL--a~~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLP----HLP-RLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPL--ASC 112 (233)
T ss_pred cccceecccccchhhcccCC----Ccc-ccceEEecCCc-ceeec-cchhhhccccceEEecCcchhhhhhcchh--ccC
Confidence 45566666666433222221 222 47777777663 33210 12233456677777666542111112222 223
Q ss_pred CCccEEEecCCCCCChHHHH--HHHhcCCCccEEeecC
Q 007516 526 HNMKELILTDCVKLTDFSLK--VIAETCPRLCTLDLSN 561 (600)
Q Consensus 526 ~sLk~L~Ls~C~~LtD~~L~--~L~~~cp~L~~LdLs~ 561 (600)
|+|++|.+-+. .+++..=. .+...+|+|+.||+..
T Consensus 113 p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 67777766663 33322111 1222456677776665
No 65
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.03 E-value=0.015 Score=63.71 Aligned_cols=102 Identities=24% Similarity=0.279 Sum_probs=49.1
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChh-hHHHHHhcCCCCcEEecCCCCCCCc-hhHH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDV-GFKALVTSAPALRSINLSQCSLLSS-TSVD 465 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~-~l~~L~~~~p~L~~L~Ls~C~~Itd-~~L~ 465 (600)
+.+|..|++..... ..+.....+|++|+.|+|++ +.|++. ++.. ++.|+.|++.+|. |++ .++.
T Consensus 94 ~~~l~~l~l~~n~i--------~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~----l~~L~~L~l~~N~-i~~~~~~~ 159 (414)
T KOG0531|consen 94 LKSLEALDLYDNKI--------EKIENLLSSLVNLQVLDLSF-NKITKLEGLST----LTLLKELNLSGNL-ISDISGLE 159 (414)
T ss_pred ccceeeeeccccch--------hhcccchhhhhcchheeccc-cccccccchhh----ccchhhheeccCc-chhccCCc
Confidence 46666666666542 11111134566667777666 444332 2222 3446666666663 222 2222
Q ss_pred HHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 466 ILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 466 ~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
. ++ .|+.|++++|....-... . +..+..|+.|.+.++.
T Consensus 160 ~----l~-~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 S----LK-SLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNS 197 (414)
T ss_pred c----ch-hhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCc
Confidence 2 22 466666666642221100 1 4556666666666554
No 66
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.36 E-value=0.0036 Score=59.95 Aligned_cols=125 Identities=27% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCC--hhhHHHHHhcCCCCcEEecCCCCCCCchhHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRIS--DVGFKALVTSAPALRSINLSQCSLLSSTSVDI 466 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~Lt--D~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~ 466 (600)
.+|+.|++.+++. ..++..+++++.|+.|+++- +++. ..|+ ..+|.|+.|+|.++. ++...+-.
T Consensus 56 ~nlevln~~nnqi--------e~lp~~issl~klr~lnvgm-nrl~~lprgf----gs~p~levldltynn-l~e~~lpg 121 (264)
T KOG0617|consen 56 KNLEVLNLSNNQI--------EELPTSISSLPKLRILNVGM-NRLNILPRGF----GSFPALEVLDLTYNN-LNENSLPG 121 (264)
T ss_pred hhhhhhhcccchh--------hhcChhhhhchhhhheecch-hhhhcCcccc----CCCchhhhhhccccc-cccccCCc
Confidence 5888888887752 33455667889999998874 3322 1221 236889999998873 44432211
Q ss_pred HHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCCh-HHHHHHHHhcCCCccEEEecCC
Q 007516 467 LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD-EFVRGFVYACGHNMKELILTDC 536 (600)
Q Consensus 467 L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd-~~l~~Ll~~~~~sLk~L~Ls~C 536 (600)
-.-.+. .|+.|+|+++..- -+...+.++++|+.|.+..+.-++- ..+.. +..|++|++.+.
T Consensus 122 nff~m~-tlralyl~dndfe---~lp~dvg~lt~lqil~lrdndll~lpkeig~-----lt~lrelhiqgn 183 (264)
T KOG0617|consen 122 NFFYMT-TLRALYLGDNDFE---ILPPDVGKLTNLQILSLRDNDLLSLPKEIGD-----LTRLRELHIQGN 183 (264)
T ss_pred chhHHH-HHHHHHhcCCCcc---cCChhhhhhcceeEEeeccCchhhCcHHHHH-----HHHHHHHhcccc
Confidence 000111 4778888877421 1345677888999999877654431 11211 257888888774
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.98 E-value=0.037 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=9.7
Q ss_pred CCccEEEeeCCCCChhhhhcc
Q 007516 578 QAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~~i~~f 598 (600)
++|++|+|++|.|++++++.|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555555554443
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.98 E-value=0.18 Score=37.29 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=17.3
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
+|++|+|++|. +++ +...+.+|++|+.|+++++.
T Consensus 2 ~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCCC
Confidence 35666666652 332 22335566666666666654
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=91.22 E-value=0.15 Score=50.21 Aligned_cols=108 Identities=23% Similarity=0.234 Sum_probs=54.4
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
.+...++|+.+..... ..+..++.|..|.|++ ++|+..+- .|...+|+|+.|.|.+|+...-..+..++
T Consensus 42 d~~d~iDLtdNdl~~l---------~~lp~l~rL~tLll~n-NrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---------DNLPHLPRLHTLLLNN-NRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred cccceecccccchhhc---------ccCCCccccceEEecC-Ccceeecc-chhhhccccceEEecCcchhhhhhcchhc
Confidence 3556666665542111 1234566677777765 55554331 12234567777777776422222233333
Q ss_pred hhccccceEEEccCccCchhhhH--HHHHhcCCCCCEEEccCCC
Q 007516 469 DKLGSFIQELYINDCQSLNAMLI--LPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i--~~~l~~l~~Le~L~Ls~c~ 510 (600)
.|| .|++|.+-+++ ++...- ...+..+|+|++|++.+..
T Consensus 111 -~~p-~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 111 -SCP-KLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred -cCC-ccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 455 37777776664 211100 1134556677777766543
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.21 E-value=0.13 Score=32.70 Aligned_cols=23 Identities=57% Similarity=0.582 Sum_probs=11.7
Q ss_pred CCCccEEeecCCCCCChHHHHHHH
Q 007516 551 CPRLCTLDLSNLYKLTDFGIGYLA 574 (600)
Q Consensus 551 cp~L~~LdLs~C~~lTd~~l~~L~ 574 (600)
|++|+.|+|++|. |++.++.+|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 3556666666653 6666665554
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.93 E-value=0.029 Score=61.50 Aligned_cols=81 Identities=27% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
+++|++|+|+++.. .+ +. -+..++.|+.|++.+ +.|++.... ..++.|+.|++++|. ++...-..
T Consensus 117 ~~~L~~L~ls~N~I--~~------i~-~l~~l~~L~~L~l~~-N~i~~~~~~---~~l~~L~~l~l~~n~-i~~ie~~~- 181 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKI--TK------LE-GLSTLTLLKELNLSG-NLISDISGL---ESLKSLKLLDLSYNR-IVDIENDE- 181 (414)
T ss_pred hhcchheecccccc--cc------cc-chhhccchhhheecc-CcchhccCC---ccchhhhcccCCcch-hhhhhhhh-
Confidence 36777777777652 11 00 123445577777777 444332211 125667777777764 33321100
Q ss_pred HhhccccceEEEccCcc
Q 007516 468 ADKLGSFIQELYINDCQ 484 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~ 484 (600)
...++ +|+.|.+.++.
T Consensus 182 ~~~~~-~l~~l~l~~n~ 197 (414)
T KOG0531|consen 182 LSELI-SLEELDLGGNS 197 (414)
T ss_pred hhhcc-chHHHhccCCc
Confidence 12333 47777777664
No 72
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.97 E-value=0.39 Score=51.82 Aligned_cols=110 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred HHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhc--cccceEEEccCccCchhhh
Q 007516 413 ASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKL--GSFIQELYINDCQSLNAML 490 (600)
Q Consensus 413 ~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~--~s~L~~L~Ls~c~~l~d~~ 490 (600)
...+..+++|..|+|++ +.+.+...... .+-.|+.|+|+.+. +..+.+.| +..|+.+-.+++ ++....
T Consensus 428 ~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~--~lv~Lq~LnlS~Nr------Fr~lP~~~y~lq~lEtllas~n-qi~~vd 497 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSN-NLLNDLPEEMG--SLVRLQTLNLSFNR------FRMLPECLYELQTLETLLASNN-QIGSVD 497 (565)
T ss_pred hHHHHhhhcceeeeccc-chhhhcchhhh--hhhhhheecccccc------cccchHHHhhHHHHHHHHhccc-cccccC
Confidence 45667889999999998 55555443322 24569999999883 22222222 123455544544 343221
Q ss_pred HHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCC
Q 007516 491 ILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCV 537 (600)
Q Consensus 491 i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~ 537 (600)
...+..+.+|.+|++.++. + ..+...+.. +++|++|.|++.+
T Consensus 498 -~~~l~nm~nL~tLDL~nNd-l--q~IPp~Lgn-mtnL~hLeL~gNp 539 (565)
T KOG0472|consen 498 -PSGLKNMRNLTTLDLQNND-L--QQIPPILGN-MTNLRHLELDGNP 539 (565)
T ss_pred -hHHhhhhhhcceeccCCCc-h--hhCChhhcc-ccceeEEEecCCc
Confidence 2357889999999998765 2 223344444 4899999999864
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=77.72 E-value=1.5 Score=41.03 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=15.4
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ 484 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~ 484 (600)
.|.++.|+|.++ .|++.... ++ ..| .|+.|++..++
T Consensus 76 f~t~t~lNl~~n-eisdvPeE-~A-am~-aLr~lNl~~N~ 111 (177)
T KOG4579|consen 76 FPTATTLNLANN-EISDVPEE-LA-AMP-ALRSLNLRFNP 111 (177)
T ss_pred cchhhhhhcchh-hhhhchHH-Hh-hhH-HhhhcccccCc
Confidence 344555555544 24443332 22 222 25555555443
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.62 E-value=1.3 Score=29.32 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=10.9
Q ss_pred CccEEEeeCCCCChhhhhc
Q 007516 579 AIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 579 ~Lk~L~Ls~c~isD~~i~~ 597 (600)
+|++|+|++|.|++++...
T Consensus 3 ~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 3 SLRELDLSNNKLGDEGARA 21 (28)
T ss_pred ccCEEECCCCCCCHHHHHH
Confidence 4566666666666555443
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.05 E-value=3.4 Score=27.35 Aligned_cols=22 Identities=55% Similarity=0.540 Sum_probs=11.0
Q ss_pred CccEEeecCCCCCChHHHHHHHh
Q 007516 553 RLCTLDLSNLYKLTDFGIGYLAN 575 (600)
Q Consensus 553 ~L~~LdLs~C~~lTd~~l~~L~~ 575 (600)
+|+.|+|++ +.|+++|...|++
T Consensus 3 ~L~~LdL~~-N~i~~~G~~~L~~ 24 (28)
T smart00368 3 SLRELDLSN-NKLGDEGARALAE 24 (28)
T ss_pred ccCEEECCC-CCCCHHHHHHHHH
Confidence 455555554 2455555555544
No 76
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=72.98 E-value=0.77 Score=51.64 Aligned_cols=155 Identities=18% Similarity=0.157 Sum_probs=89.1
Q ss_pred HhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHH
Q 007516 415 SLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (600)
Q Consensus 415 ~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~ 494 (600)
.+.++..|+.|+|+. +.++-... .++. | -|+.|-++++. ++.... .+. ..+ .|..|+.+.|...+ +...
T Consensus 116 ~i~~L~~lt~l~ls~-NqlS~lp~-~lC~-l-pLkvli~sNNk-l~~lp~-~ig-~~~-tl~~ld~s~nei~s---lpsq 184 (722)
T KOG0532|consen 116 AICNLEALTFLDLSS-NQLSHLPD-GLCD-L-PLKVLIVSNNK-LTSLPE-EIG-LLP-TLAHLDVSKNEIQS---LPSQ 184 (722)
T ss_pred hhhhhhHHHHhhhcc-chhhcCCh-hhhc-C-cceeEEEecCc-cccCCc-ccc-cch-hHHHhhhhhhhhhh---chHH
Confidence 445677788888886 44432221 1221 3 48888888874 333111 111 223 48889999885333 4567
Q ss_pred HhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHH
Q 007516 495 LRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLA 574 (600)
Q Consensus 495 l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~ 574 (600)
+..+.+|+.|.+..+..+. ...++. .-.|..||++ |++|+... .-+..++.|++|-|.+.+ +..-...-..
T Consensus 185 l~~l~slr~l~vrRn~l~~--lp~El~---~LpLi~lDfS-cNkis~iP--v~fr~m~~Lq~l~LenNP-LqSPPAqIC~ 255 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLED--LPEELC---SLPLIRLDFS-CNKISYLP--VDFRKMRHLQVLQLENNP-LQSPPAQICE 255 (722)
T ss_pred hhhHHHHHHHHHhhhhhhh--CCHHHh---CCceeeeecc-cCceeecc--hhhhhhhhheeeeeccCC-CCCChHHHHh
Confidence 7788888888887665221 111221 2468889997 46776533 233467889999998755 4332222222
Q ss_pred hcCC-CccEEEeeCCC
Q 007516 575 NGCQ-AIQTLKLCRNA 589 (600)
Q Consensus 575 ~~c~-~Lk~L~Ls~c~ 589 (600)
.+.- -.|+|+...|.
T Consensus 256 kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 256 KGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccceeeeeeecchhcc
Confidence 2222 25788887773
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=72.41 E-value=2.5 Score=24.69 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=7.0
Q ss_pred CCccEEEeeCCCCC
Q 007516 578 QAIQTLKLCRNAFR 591 (600)
Q Consensus 578 ~~Lk~L~Ls~c~is 591 (600)
++|+.|+|++|.++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666777776654
No 78
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=68.39 E-value=2.4 Score=39.71 Aligned_cols=108 Identities=20% Similarity=0.161 Sum_probs=67.5
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPR 553 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~ 553 (600)
.+..|+|+.|+-..-......+....+|+..+|+++. +.+ .-..|. ...+.++.|+|++ +.|+|...+ ++ .+|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~-fp~kft-~kf~t~t~lNl~~-neisdvPeE-~A-am~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKK-FPKKFT-IKFPTATTLNLAN-NEISDVPEE-LA-AMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhh-CCHHHh-hccchhhhhhcch-hhhhhchHH-Hh-hhHH
Confidence 4778999999643222234566677788888887764 221 111222 2236789999998 578886666 55 6899
Q ss_pred ccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCC
Q 007516 554 LCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (600)
Q Consensus 554 L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~i 590 (600)
|+.|++++.+ +.-. ..-++. +.+|-.|+.-++.+
T Consensus 102 Lr~lNl~~N~-l~~~-p~vi~~-L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 102 LRSLNLRFNP-LNAE-PRVIAP-LIKLDMLDSPENAR 135 (177)
T ss_pred hhhcccccCc-cccc-hHHHHH-HHhHHHhcCCCCcc
Confidence 9999999854 4322 223333 55666676666543
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.85 E-value=9.3 Score=43.09 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCC--CchhHHHHHhhccccceEEEccCccCc
Q 007516 409 LSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLL--SSTSVDILADKLGSFIQELYINDCQSL 486 (600)
Q Consensus 409 ~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~I--td~~L~~L~~~~~s~L~~L~Ls~c~~l 486 (600)
...+.....+.+.+..|+|+++....-.++..|+...|+|..|+|++++.. +...+..+. . . .|++|-+.+++-.
T Consensus 207 ~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~-l-~Leel~l~GNPlc 283 (585)
T KOG3763|consen 207 AAVLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-G-L-PLEELVLEGNPLC 283 (585)
T ss_pred HHHHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-C-C-CHHHeeecCCccc
Confidence 344566667888999999998554455567778888899999999998322 122222222 2 2 3889999988754
Q ss_pred hhh-----hHHHHHhcCCCCCEEE
Q 007516 487 NAM-----LILPALRKLKHLEVLS 505 (600)
Q Consensus 487 ~d~-----~i~~~l~~l~~Le~L~ 505 (600)
+.. -+..+...+|.|..|+
T Consensus 284 ~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 284 TTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cchhhhHHHHHHHHHhcchheeec
Confidence 432 1233445678887776
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.70 E-value=11 Score=42.47 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=56.5
Q ss_pred HHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcc-cCChhh-HHHHHhcCCCCcEEecCCC
Q 007516 379 FTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGAC-RISDVG-FKALVTSAPALRSINLSQC 456 (600)
Q Consensus 379 L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~-~LtD~~-l~~L~~~~p~L~~L~Ls~C 456 (600)
+..+... .|.+..++|+++....- ..+..+....|+|+.|+|+++. .+.... +..+ ....|++|-|.+|
T Consensus 210 L~~~~~n--~p~i~sl~lsnNrL~~L-----d~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GN 280 (585)
T KOG3763|consen 210 LKHIEEN--FPEILSLSLSNNRLYHL-----DALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGN 280 (585)
T ss_pred HHHhhcC--Ccceeeeecccchhhch-----hhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCC
Confidence 3344443 37889999988874322 2344566778999999999852 222221 1222 3467999999998
Q ss_pred CCCCc-----hhHHHHHhhccccceEEE
Q 007516 457 SLLSS-----TSVDILADKLGSFIQELY 479 (600)
Q Consensus 457 ~~Itd-----~~L~~L~~~~~s~L~~L~ 479 (600)
+..+. .-+..+-+.+|+ |..||
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPK-L~~LD 307 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPK-LLRLD 307 (585)
T ss_pred ccccchhhhHHHHHHHHHhcch-heeec
Confidence 75444 234455556674 77765
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=62.37 E-value=3.6 Score=25.53 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=8.7
Q ss_pred CccEEEeeCCCCC
Q 007516 579 AIQTLKLCRNAFR 591 (600)
Q Consensus 579 ~Lk~L~Ls~c~is 591 (600)
+|++|+|++|.|+
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4667777777666
No 82
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=36.81 E-value=26 Score=22.85 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=10.1
Q ss_pred ccEEeecCCCCCChHHHHHHHhcCC
Q 007516 554 LCTLDLSNLYKLTDFGIGYLANGCQ 578 (600)
Q Consensus 554 L~~LdLs~C~~lTd~~l~~L~~~c~ 578 (600)
|++|.|.....-.+..+..|.++||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4444444432222234444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=32.45 E-value=33 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=10.1
Q ss_pred CCccEEEeeCCCCChh
Q 007516 578 QAIQTLKLCRNAFRFV 593 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~ 593 (600)
++|++|+|++|.|+.-
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777765543
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=32.45 E-value=33 Score=21.72 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=10.1
Q ss_pred CCccEEEeeCCCCChh
Q 007516 578 QAIQTLKLCRNAFRFV 593 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~ 593 (600)
++|++|+|++|.|+.-
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4567777777765543
No 85
>PRK13042 superantigen-like protein; Reviewed
Probab=29.93 E-value=73 Score=33.12 Aligned_cols=45 Identities=31% Similarity=0.466 Sum_probs=28.8
Q ss_pred CCCCCCcCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCcccc
Q 007516 10 PPTKPEIEPLKHPANKIEPAT----PARTWDTTRPASSGDDDGGDAGRKR 55 (600)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (600)
|+++|+. |..+|..++.|++ |..||..|-|.+..+.-||..+-|.
T Consensus 46 ~~~k~~~-~qp~p~~ttp~s~~~~t~qptp~~~tp~~~~~~~pq~~~~~~ 94 (291)
T PRK13042 46 PSTKVEA-PQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQ 94 (291)
T ss_pred CcccccC-CCCCCCCCCCCCCCccCCCCCCCCCCCCccCcCCCCCCchhh
Confidence 4444444 3445666666655 3444777888888888888877664
No 86
>cd03742 SOCS_Rab40 SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as membrane-associated molecular switches. Rab40 is characterized by a SOCS box c-terminal to the GTPase domain. The SOCS boxes interact with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=29.02 E-value=66 Score=23.88 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=24.0
Q ss_pred cCCchhhhhHHHHHhcCC--CCCCCCCCcHHHHHHHH
Q 007516 307 IIPSLKELSMKILVQNAD--AITSLEHVPDALRHKLS 341 (600)
Q Consensus 307 ~~psL~dLcL~~l~~n~~--~l~sL~~Lp~~~~~kL~ 341 (600)
.+++||++|=..|..+.. +|..| .||..+...+.
T Consensus 2 k~~SLQ~LCR~~I~~~t~~~~I~~L-PLP~~Lk~yLk 37 (43)
T cd03742 2 KVLSLQDLCCRAIVSCTPVYLIDKL-PLPVSIKSHLK 37 (43)
T ss_pred ccccHHHHHHHHHHHhCCcchhhhC-CCCHHHHHHHH
Confidence 578999999999987765 44444 45666666543
No 87
>cd03735 SOCS_SOCS1 SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.
Probab=26.38 E-value=1.2e+02 Score=22.53 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=23.3
Q ss_pred cCCchhhhhHHHHHhcCCC--CCCCCCCcHHHHHHHH
Q 007516 307 IIPSLKELSMKILVQNADA--ITSLEHVPDALRHKLS 341 (600)
Q Consensus 307 ~~psL~dLcL~~l~~n~~~--l~sL~~Lp~~~~~kL~ 341 (600)
.+++||+||=..|..++.. +..+ .||..+.+-|.
T Consensus 2 ~~~sLQhLCR~tI~~~~~~~~i~~l-pLP~~LKdyL~ 37 (43)
T cd03735 2 RVRPLQELCRKSIVATFGRENLARI-PLNPVLKDYLK 37 (43)
T ss_pred CccCHHHHHHHHHHHhcCccccccC-cCCHHHHHHHH
Confidence 5889999999999887753 2222 56666655443
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=25.23 E-value=1.5e+02 Score=31.68 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=60.9
Q ss_pred CCchhHHHHHhhccccceEEEccCccCchhhhH---HHHHhcCCCCCEEEccCCCCCChH---HHHHHHHhcCCCccEEE
Q 007516 459 LSSTSVDILADKLGSFIQELYINDCQSLNAMLI---LPALRKLKHLEVLSVAGIETVTDE---FVRGFVYACGHNMKELI 532 (600)
Q Consensus 459 Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i---~~~l~~l~~Le~L~Ls~c~~ltd~---~l~~Ll~~~~~sLk~L~ 532 (600)
..+..+..+-. ..+.|+.++|++...+....+ ...+...++.+...+.+.. .+|- ++..++ ..+.+|++|+
T Consensus 185 ~~e~~leri~~-nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr-~~d~vA~a~a~ml-~~n~sl~sln 261 (353)
T KOG3735|consen 185 DVESSLERIKE-NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTR-SSDPVAFAIAEML-KENKSLTSLN 261 (353)
T ss_pred hHHHHHHHHhc-CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhccc-CCchhHHHHHHHH-hhcchhhhee
Confidence 33444554443 334699999998887765433 3455666677777776654 3331 222223 3348899999
Q ss_pred ecCCCCCChHHHHHHHhcCC---CccEEeecC
Q 007516 533 LTDCVKLTDFSLKVIAETCP---RLCTLDLSN 561 (600)
Q Consensus 533 Ls~C~~LtD~~L~~L~~~cp---~L~~LdLs~ 561 (600)
+.+ ..||..++.++...+. .|..|.+.+
T Consensus 262 ves-nFItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 262 VES-NFITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred ccc-cccccHHHHHHHHHHhccchhhHhhhhh
Confidence 988 5899988888775543 455444443
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=23.72 E-value=22 Score=40.61 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=53.5
Q ss_pred CCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHh
Q 007516 390 NLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILAD 469 (600)
Q Consensus 390 ~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~ 469 (600)
-|+.|-++++... .++.-+...+.|..|+.+.|...+- ...+ .++.+|+.|++..++.+ + -...++
T Consensus 144 pLkvli~sNNkl~--------~lp~~ig~~~tl~~ld~s~nei~sl--psql-~~l~slr~l~vrRn~l~-~-lp~El~- 209 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT--------SLPEEIGLLPTLAHLDVSKNEIQSL--PSQL-GYLTSLRDLNVRRNHLE-D-LPEELC- 209 (722)
T ss_pred cceeEEEecCccc--------cCCcccccchhHHHhhhhhhhhhhc--hHHh-hhHHHHHHHHHhhhhhh-h-CCHHHh-
Confidence 4677777666531 1111223456666777765432210 1111 12456666776665421 1 112233
Q ss_pred hccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 470 KLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 470 ~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
.+ .|..||+++|. +.. |...+.++++|++|.|.++.
T Consensus 210 ~L--pLi~lDfScNk-is~--iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 210 SL--PLIRLDFSCNK-ISY--LPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred CC--ceeeeecccCc-eee--cchhhhhhhhheeeeeccCC
Confidence 22 27888888663 432 34567778888888887765
No 90
>cd03737 SOCS_SOCS3 SOCS (suppressors of cytokine signaling) box of SOCS3-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS3, like CIS1 and SOCS1, is involved in the down-regulation of the JAK/STAT pathway. SOCS3 inhibits JAK activity indirectly through recruitment to the cytokine receptors. SOCS3 has been shown to play an essential role in placental development and a non-essential role in embryo development. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.12 E-value=1.2e+02 Score=22.28 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=23.2
Q ss_pred cCCchhhhhHHHHHhcCCCCCCCCCCcHHHHH
Q 007516 307 IIPSLKELSMKILVQNADAITSLEHVPDALRH 338 (600)
Q Consensus 307 ~~psL~dLcL~~l~~n~~~l~sL~~Lp~~~~~ 338 (600)
.+|+||.||=..|..+......+..||..+.+
T Consensus 2 ~v~SLQHLCR~~In~~~~~~~~~~~LP~~Lk~ 33 (42)
T cd03737 2 SVSTLQHLCRKTVNGHLDSYEKRTQLPLPIKE 33 (42)
T ss_pred CcccHHHHHHHHHHHhcCcccchhhccHHHHH
Confidence 47999999999998877655455667765433
Done!