Query 007516
Match_columns 600
No_of_seqs 364 out of 2769
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 03:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.8 5.3E-20 1.8E-24 190.8 22.1 212 363-592 95-307 (336)
2 3ogk_B Coronatine-insensitive 99.8 4.2E-20 1.5E-24 205.9 22.6 224 360-598 292-533 (592)
3 2p1m_B Transport inhibitor res 99.8 1.3E-19 4.6E-24 201.8 25.9 248 334-598 251-526 (594)
4 2ast_B S-phase kinase-associat 99.8 7E-20 2.4E-24 189.8 18.4 228 353-598 62-291 (336)
5 2p1m_B Transport inhibitor res 99.8 1.9E-18 6.4E-23 192.5 21.9 208 374-597 276-500 (594)
6 3ogk_B Coronatine-insensitive 99.8 5.5E-18 1.9E-22 188.8 20.5 220 362-598 271-508 (592)
7 2ca6_A RAN GTPase-activating p 99.7 4.7E-16 1.6E-20 165.0 24.3 225 360-594 59-319 (386)
8 1z7x_W Ribonuclease inhibitor; 99.7 9.7E-16 3.3E-20 165.3 22.6 225 362-597 86-332 (461)
9 2ca6_A RAN GTPase-activating p 99.7 2.1E-15 7.1E-20 160.0 22.2 228 360-595 31-291 (386)
10 1z7x_W Ribonuclease inhibitor; 99.7 3.2E-15 1.1E-19 161.2 23.6 228 360-598 55-304 (461)
11 3goz_A Leucine-rich repeat-con 99.6 2E-14 6.9E-19 151.5 16.9 222 362-593 52-299 (362)
12 3goz_A Leucine-rich repeat-con 99.6 5.7E-14 2E-18 148.0 19.0 224 361-596 22-274 (362)
13 3un9_A NLR family member X1; l 99.5 4.7E-13 1.6E-17 142.4 17.0 196 389-593 72-285 (372)
14 3un9_A NLR family member X1; l 99.5 5.8E-13 2E-17 141.8 16.5 173 419-598 71-259 (372)
15 3e4g_A ATP synthase subunit S, 99.4 4.3E-13 1.5E-17 128.0 8.6 105 474-581 62-170 (176)
16 3e4g_A ATP synthase subunit S, 99.3 1.3E-12 4.4E-17 124.7 7.2 91 500-594 62-156 (176)
17 4fmz_A Internalin; leucine ric 99.3 2.6E-11 9E-16 125.9 16.8 152 417-592 174-325 (347)
18 4fmz_A Internalin; leucine ric 99.3 3.3E-11 1.1E-15 125.1 16.0 194 359-591 153-346 (347)
19 1h6u_A Internalin H; cell adhe 99.3 1.9E-11 6.5E-16 126.1 11.4 193 360-593 40-232 (308)
20 4fcg_A Uncharacterized protein 99.2 7.2E-13 2.5E-17 138.1 0.1 182 389-594 104-293 (328)
21 1ozn_A Reticulon 4 receptor; N 99.2 2.3E-12 8E-17 130.6 2.1 209 360-592 31-239 (285)
22 2ra8_A Uncharacterized protein 99.2 6.9E-11 2.4E-15 125.4 11.5 215 362-589 108-341 (362)
23 3v47_A TOLL-like receptor 5B a 99.2 1.5E-11 5.2E-16 132.4 5.3 216 360-596 78-365 (455)
24 2z80_A TOLL-like receptor 2, v 99.2 1.5E-11 5.1E-16 128.6 5.1 158 360-536 75-232 (353)
25 4glp_A Monocyte differentiatio 99.2 4.5E-12 1.5E-16 130.4 1.1 215 360-593 90-309 (310)
26 4glp_A Monocyte differentiatio 99.2 1.8E-12 6.1E-17 133.5 -2.0 214 359-592 62-286 (310)
27 2z66_A Variable lymphocyte rec 99.2 1.1E-12 3.8E-17 134.2 -3.7 209 360-592 51-262 (306)
28 2z80_A TOLL-like receptor 2, v 99.1 1.5E-11 5E-16 128.7 4.5 212 360-593 99-316 (353)
29 2z66_A Variable lymphocyte rec 99.1 1.2E-12 4.1E-17 133.9 -4.7 213 361-595 28-240 (306)
30 4ezg_A Putative uncharacterize 99.1 6.4E-11 2.2E-15 113.8 7.5 131 445-592 65-195 (197)
31 3zyj_A Leucine-rich repeat-con 99.1 5E-12 1.7E-16 136.5 -1.3 205 361-591 88-292 (440)
32 3v47_A TOLL-like receptor 5B a 99.1 2.1E-11 7.1E-16 131.3 3.5 218 360-595 53-340 (455)
33 3zyi_A Leucine-rich repeat-con 99.1 7.5E-12 2.6E-16 135.6 -0.4 181 389-591 123-303 (452)
34 1wwl_A Monocyte differentiatio 99.1 8.8E-12 3E-16 128.5 0.1 214 360-593 94-311 (312)
35 1o6v_A Internalin A; bacterial 99.1 7.4E-10 2.5E-14 120.3 15.1 150 417-592 240-389 (466)
36 3t6q_A CD180 antigen; protein- 99.1 1.1E-11 3.6E-16 138.7 0.5 188 389-593 350-538 (606)
37 1xku_A Decorin; proteoglycan, 99.1 2.8E-11 9.5E-16 125.2 3.4 208 360-598 75-283 (330)
38 1h6u_A Internalin H; cell adhe 99.1 4.8E-10 1.6E-14 115.5 12.6 171 389-594 41-211 (308)
39 3zyj_A Leucine-rich repeat-con 99.1 1E-11 3.5E-16 134.0 0.1 208 361-594 64-271 (440)
40 1o6v_A Internalin A; bacterial 99.1 4.9E-10 1.7E-14 121.8 13.2 194 360-594 176-369 (466)
41 1ozn_A Reticulon 4 receptor; N 99.1 1.8E-11 6.3E-16 124.0 1.7 186 389-594 32-217 (285)
42 3zyi_A Leucine-rich repeat-con 99.1 1.4E-11 4.8E-16 133.5 0.2 208 361-594 75-282 (452)
43 2ra8_A Uncharacterized protein 99.1 4.7E-10 1.6E-14 118.9 11.7 182 361-561 139-339 (362)
44 1h6t_A Internalin B; cell adhe 99.1 2.7E-10 9.4E-15 116.5 9.6 101 475-592 114-214 (291)
45 4fcg_A Uncharacterized protein 99.1 1.8E-11 6.1E-16 127.5 0.3 204 360-591 103-314 (328)
46 1wwl_A Monocyte differentiatio 99.1 3.2E-11 1.1E-15 124.3 2.1 189 388-593 94-289 (312)
47 3rfs_A Internalin B, repeat mo 99.0 4.9E-11 1.7E-15 120.5 2.8 201 360-596 40-240 (272)
48 1m9s_A Internalin B; cell inva 99.0 2.8E-10 9.7E-15 128.5 9.1 102 475-593 111-212 (605)
49 2id5_A Lingo-1, leucine rich r 99.0 5.1E-11 1.8E-15 129.4 2.9 162 418-593 150-311 (477)
50 3vq2_A TLR4, TOLL-like recepto 99.0 1.2E-11 4.1E-16 138.2 -2.2 183 389-592 376-559 (606)
51 2z63_A TOLL-like receptor 4, v 99.0 7.6E-12 2.6E-16 138.3 -4.0 210 360-593 324-533 (570)
52 3t6q_A CD180 antigen; protein- 99.0 2.7E-11 9.4E-16 135.3 0.4 216 361-598 278-496 (606)
53 2id5_A Lingo-1, leucine rich r 99.0 7.4E-11 2.5E-15 128.2 3.7 212 361-597 80-291 (477)
54 3o53_A Protein LRIM1, AGAP0063 99.0 9.2E-11 3.1E-15 121.1 3.4 133 445-592 119-251 (317)
55 2z62_A TOLL-like receptor 4, v 99.0 3.2E-11 1.1E-15 121.6 -0.2 209 360-593 27-239 (276)
56 3o6n_A APL1; leucine-rich repe 99.0 5.6E-11 1.9E-15 125.9 1.6 63 361-435 117-179 (390)
57 1xku_A Decorin; proteoglycan, 99.0 2.7E-10 9.1E-15 117.8 6.6 205 360-594 99-309 (330)
58 3rgz_A Protein brassinosteroid 99.0 2E-11 7E-16 141.2 -2.2 107 475-591 225-331 (768)
59 3oja_B Anopheles plasmodium-re 99.0 6.7E-11 2.3E-15 132.9 2.0 40 550-594 322-361 (597)
60 3oja_A Leucine-rich immune mol 99.0 8.6E-11 2.9E-15 129.1 2.5 155 420-594 99-253 (487)
61 1io0_A Tropomodulin; LRR prote 99.0 6.2E-09 2.1E-13 99.5 15.1 131 411-569 27-167 (185)
62 3bz5_A Internalin-J, INLJ; leu 99.0 8.4E-10 2.9E-14 120.3 9.7 188 360-595 63-250 (457)
63 3o53_A Protein LRIM1, AGAP0063 99.0 1.2E-10 4.1E-15 120.3 2.5 87 496-591 141-227 (317)
64 3bz5_A Internalin-J, INLJ; leu 99.0 6.9E-10 2.4E-14 121.0 8.7 186 359-592 83-268 (457)
65 3vq2_A TLR4, TOLL-like recepto 99.0 3.3E-11 1.1E-15 134.7 -2.5 210 359-592 326-535 (606)
66 2z81_A CD282 antigen, TOLL-lik 99.0 1.2E-09 4.3E-14 120.2 10.1 87 360-457 73-159 (549)
67 2z7x_B TOLL-like receptor 1, v 99.0 1.3E-10 4.5E-15 127.4 2.2 162 417-593 321-483 (520)
68 3rfs_A Internalin B, repeat mo 99.0 4.6E-10 1.6E-14 113.3 5.8 179 389-592 41-219 (272)
69 1ogq_A PGIP-2, polygalacturona 99.0 1.4E-11 4.9E-16 127.2 -5.4 208 360-592 75-282 (313)
70 3o6n_A APL1; leucine-rich repe 99.0 3.4E-10 1.2E-14 119.8 5.0 109 360-484 68-176 (390)
71 3oja_B Anopheles plasmodium-re 98.9 2.1E-10 7.1E-15 128.9 2.8 110 473-595 232-341 (597)
72 2z81_A CD282 antigen, TOLL-lik 98.9 9.5E-11 3.3E-15 129.2 -0.4 41 550-591 221-264 (549)
73 3oja_A Leucine-rich immune mol 98.9 2.2E-10 7.7E-15 125.8 2.6 194 362-592 35-228 (487)
74 2o6q_A Variable lymphocyte rec 98.9 2.3E-10 8E-15 115.2 1.7 12 418-429 83-94 (270)
75 2ft3_A Biglycan; proteoglycan, 98.9 8.6E-11 3E-15 121.7 -1.6 205 361-591 78-307 (332)
76 2z63_A TOLL-like receptor 4, v 98.9 9.1E-11 3.1E-15 129.7 -1.8 206 362-595 305-511 (570)
77 1ogq_A PGIP-2, polygalacturona 98.9 3E-11 1E-15 124.8 -5.4 211 361-596 50-262 (313)
78 3rgz_A Protein brassinosteroid 98.9 7.7E-11 2.6E-15 136.4 -2.9 112 474-594 419-530 (768)
79 2z7x_B TOLL-like receptor 1, v 98.9 1.3E-09 4.4E-14 119.5 6.4 132 417-563 345-479 (520)
80 1ziw_A TOLL-like receptor 3; i 98.9 8.9E-10 3E-14 124.9 5.1 42 551-594 221-264 (680)
81 1io0_A Tropomodulin; LRR prote 98.9 2.7E-08 9.2E-13 95.0 14.6 126 377-510 26-162 (185)
82 4ezg_A Putative uncharacterize 98.9 1.5E-09 5.3E-14 104.0 5.5 132 445-593 43-174 (197)
83 1h6t_A Internalin B; cell adhe 98.8 1.4E-08 4.6E-13 103.8 11.9 165 361-562 46-210 (291)
84 1m9s_A Internalin B; cell inva 98.8 7.3E-09 2.5E-13 116.9 10.3 167 360-563 42-208 (605)
85 1ziw_A TOLL-like receptor 3; i 98.8 7.5E-10 2.6E-14 125.5 1.8 140 444-593 478-624 (680)
86 4ecn_A Leucine-rich repeat pro 98.8 1.1E-09 3.8E-14 128.5 2.2 33 475-510 597-630 (876)
87 2z62_A TOLL-like receptor 4, v 98.8 6.4E-10 2.2E-14 112.0 -0.2 185 389-594 28-216 (276)
88 1p9a_G Platelet glycoprotein I 98.8 7.8E-10 2.7E-14 113.1 0.3 199 362-592 11-209 (290)
89 3j0a_A TOLL-like receptor 5; m 98.8 1.6E-10 5.6E-15 135.0 -6.0 136 360-510 23-159 (844)
90 2ft3_A Biglycan; proteoglycan, 98.8 5.7E-10 2E-14 115.5 -1.5 63 526-593 217-279 (332)
91 4eco_A Uncharacterized protein 98.8 5.3E-10 1.8E-14 126.7 -2.1 158 419-591 304-470 (636)
92 2xwt_C Thyrotropin receptor; s 98.7 1.7E-10 5.8E-15 113.9 -5.9 201 361-588 31-236 (239)
93 3g06_A SSPH2 (leucine-rich rep 98.7 3.3E-09 1.1E-13 120.2 3.6 84 498-597 220-303 (622)
94 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 9.8E-10 3.4E-14 122.1 -0.7 161 417-592 350-511 (562)
95 2ell_A Acidic leucine-rich nuc 98.7 3.5E-09 1.2E-13 98.6 3.1 109 475-592 51-161 (168)
96 4eco_A Uncharacterized protein 98.7 1.4E-09 4.9E-14 123.1 -0.1 209 360-591 272-501 (636)
97 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 6.4E-09 2.2E-13 115.5 4.8 79 361-457 100-180 (562)
98 2xwt_C Thyrotropin receptor; s 98.7 6.1E-10 2.1E-14 109.8 -3.6 184 389-592 31-219 (239)
99 3j0a_A TOLL-like receptor 5; m 98.7 9.8E-10 3.4E-14 128.4 -2.6 86 361-456 73-158 (844)
100 2je0_A Acidic leucine-rich nuc 98.7 2.2E-08 7.4E-13 91.2 6.9 12 445-456 41-52 (149)
101 2o6q_A Variable lymphocyte rec 98.7 3.8E-09 1.3E-13 106.3 1.2 202 363-592 18-219 (270)
102 4ecn_A Leucine-rich repeat pro 98.7 4.8E-09 1.6E-13 123.1 2.1 207 359-592 446-687 (876)
103 3m19_A Variable lymphocyte rec 98.6 6.2E-09 2.1E-13 103.6 2.3 155 389-562 35-189 (251)
104 1xeu_A Internalin C; cellular 98.6 1.7E-08 5.8E-13 101.7 5.0 142 389-562 41-182 (263)
105 2je0_A Acidic leucine-rich nuc 98.6 2.9E-08 9.8E-13 90.4 6.1 107 389-509 17-123 (149)
106 3g06_A SSPH2 (leucine-rich rep 98.6 1.3E-08 4.4E-13 115.3 4.1 180 360-591 80-274 (622)
107 2ell_A Acidic leucine-rich nuc 98.6 1.2E-08 4.1E-13 94.9 2.1 13 550-562 145-157 (168)
108 1p9a_G Platelet glycoprotein I 98.6 2.4E-08 8.3E-13 101.9 3.7 178 388-592 9-186 (290)
109 1xeu_A Internalin C; cellular 98.5 8.2E-08 2.8E-12 96.6 7.1 143 360-536 40-182 (263)
110 3m19_A Variable lymphocyte rec 98.5 4.4E-08 1.5E-12 97.4 2.7 131 389-536 59-189 (251)
111 3cvr_A Invasion plasmid antige 98.4 7.1E-08 2.4E-12 108.1 3.7 189 361-597 59-249 (571)
112 2o6s_A Variable lymphocyte rec 98.4 1.2E-08 4.2E-13 98.2 -2.6 59 389-456 28-86 (208)
113 4g8a_A TOLL-like receptor 4; l 98.4 1.8E-08 6.1E-13 112.0 -3.7 185 389-592 397-581 (635)
114 1a9n_A U2A', U2A'; complex (nu 98.3 2.3E-07 7.7E-12 87.2 4.1 12 389-400 19-30 (176)
115 2xot_A Amphoterin-induced prot 98.3 9.4E-08 3.2E-12 100.4 1.2 108 389-510 39-147 (361)
116 1a9n_A U2A', U2A'; complex (nu 98.3 1.6E-07 5.4E-12 88.2 2.6 133 417-562 16-150 (176)
117 1pgv_A TMD-1, tropomodulin TMD 98.3 6.5E-06 2.2E-10 79.7 13.8 69 492-561 91-166 (197)
118 1jl5_A Outer protein YOPM; leu 98.3 5E-07 1.7E-11 98.2 6.7 118 361-510 131-248 (454)
119 1jl5_A Outer protein YOPM; leu 98.3 3.5E-07 1.2E-11 99.4 5.2 76 420-510 131-206 (454)
120 1pgv_A TMD-1, tropomodulin TMD 98.3 1.2E-05 4.2E-10 77.7 14.7 125 409-536 30-167 (197)
121 4g8a_A TOLL-like receptor 4; l 98.3 3.4E-07 1.2E-11 101.6 4.0 184 389-592 52-238 (635)
122 1dce_A Protein (RAB geranylger 98.2 2.8E-08 9.5E-13 111.4 -5.7 124 446-585 441-567 (567)
123 1ds9_A Outer arm dynein; leuci 98.1 6.3E-07 2.1E-11 85.7 1.9 36 417-456 45-80 (198)
124 2v9t_B SLIT homolog 2 protein 98.1 4.3E-07 1.5E-11 88.7 0.7 132 420-563 32-163 (220)
125 2o6s_A Variable lymphocyte rec 98.1 8.5E-07 2.9E-11 85.2 2.4 159 419-598 27-185 (208)
126 3e6j_A Variable lymphocyte rec 98.1 9.2E-07 3.1E-11 86.8 2.6 132 419-563 39-170 (229)
127 1dce_A Protein (RAB geranylger 98.1 7.8E-08 2.7E-12 107.7 -6.0 180 389-593 349-548 (567)
128 2v70_A SLIT-2, SLIT homolog 2 98.1 6.5E-07 2.2E-11 87.4 0.8 133 420-563 32-164 (220)
129 2xot_A Amphoterin-induced prot 98.0 1.1E-06 3.7E-11 92.3 2.1 166 360-544 38-207 (361)
130 3cvr_A Invasion plasmid antige 98.0 2.2E-06 7.6E-11 96.0 4.4 161 389-592 59-221 (571)
131 1ds9_A Outer arm dynein; leuci 98.0 7.9E-07 2.7E-11 85.0 0.4 133 444-593 46-187 (198)
132 2v70_A SLIT-2, SLIT homolog 2 98.0 1.9E-06 6.6E-11 84.0 2.0 155 364-541 14-168 (220)
133 3e6j_A Variable lymphocyte rec 97.9 2.5E-06 8.6E-11 83.7 2.4 130 389-536 40-169 (229)
134 2v9t_B SLIT homolog 2 protein 97.9 3.3E-06 1.1E-10 82.4 2.0 142 389-547 32-173 (220)
135 4ay9_X Follicle-stimulating ho 97.9 2.8E-07 9.7E-12 96.2 -6.7 204 360-588 29-233 (350)
136 3sb4_A Hypothetical leucine ri 97.8 2.5E-06 8.6E-11 88.1 -0.5 90 496-594 223-313 (329)
137 1w8a_A SLIT protein; signaling 97.8 1.9E-06 6.3E-11 82.3 -1.4 127 423-563 11-137 (192)
138 4ay9_X Follicle-stimulating ho 97.8 4.7E-07 1.6E-11 94.6 -6.3 203 360-587 53-255 (350)
139 4b8c_D Glucose-repressible alc 97.7 1.6E-06 5.6E-11 99.7 -3.1 10 579-588 360-369 (727)
140 2wfh_A SLIT homolog 2 protein 97.7 8.2E-06 2.8E-10 78.0 1.4 125 423-563 13-137 (193)
141 2o6r_A Variable lymphocyte rec 97.7 8.1E-06 2.8E-10 76.3 0.8 127 422-563 9-135 (177)
142 4b8c_D Glucose-repressible alc 97.5 7.3E-06 2.5E-10 94.3 -2.6 139 442-595 220-358 (727)
143 2wfh_A SLIT homolog 2 protein 97.2 0.00018 6.2E-09 68.6 4.0 38 417-456 51-88 (193)
144 3sb4_A Hypothetical leucine ri 97.2 5.6E-05 1.9E-09 77.9 -0.3 112 461-585 215-328 (329)
145 2o6r_A Variable lymphocyte rec 97.2 0.00018 6.3E-09 66.9 3.2 38 417-456 49-86 (177)
146 1w8a_A SLIT protein; signaling 97.1 0.00011 3.9E-09 69.7 1.6 37 418-456 52-88 (192)
147 4fdw_A Leucine rich hypothetic 96.7 0.00026 8.9E-09 75.6 -0.4 193 361-591 157-358 (401)
148 3rw6_A Nuclear RNA export fact 96.6 0.005 1.7E-07 62.2 8.4 92 409-505 159-257 (267)
149 3g39_A Variable lymphocyte rec 96.3 0.00073 2.5E-08 62.9 0.6 79 422-510 11-89 (170)
150 3rw6_A Nuclear RNA export fact 96.3 0.0092 3.1E-07 60.2 8.2 92 438-534 162-259 (267)
151 4fdw_A Leucine rich hypothetic 95.8 0.0035 1.2E-07 66.8 3.1 188 362-588 136-333 (401)
152 3g39_A Variable lymphocyte rec 95.5 0.0057 1.9E-07 56.7 2.5 84 420-510 30-113 (170)
153 2r9u_A Variable lymphocyte rec 95.4 0.0055 1.9E-07 57.2 2.3 84 420-510 33-116 (174)
154 2r9u_A Variable lymphocyte rec 95.3 0.0091 3.1E-07 55.6 3.3 38 417-456 54-91 (174)
155 2ifg_A High affinity nerve gro 95.3 0.0041 1.4E-07 64.0 1.0 83 474-563 32-114 (347)
156 2ifg_A High affinity nerve gro 94.6 0.019 6.5E-07 58.9 3.8 39 416-456 52-90 (347)
157 4gt6_A Cell surface protein; l 86.7 0.54 1.8E-05 49.1 4.8 126 443-590 262-390 (394)
158 4fs7_A Uncharacterized protein 79.3 0.29 9.8E-06 51.2 -0.9 84 494-588 292-376 (394)
159 4gt6_A Cell surface protein; l 73.7 3.4 0.00012 42.8 5.5 123 417-561 262-387 (394)
160 4h09_A Hypothetical leucine ri 63.1 2 6.8E-05 44.2 0.9 124 417-560 214-341 (379)
161 4fs7_A Uncharacterized protein 57.6 5.2 0.00018 41.4 2.9 99 389-509 276-376 (394)
162 4h09_A Hypothetical leucine ri 49.8 7.8 0.00027 39.6 2.7 103 417-535 237-342 (379)
163 3rfe_A Platelet glycoprotein I 43.1 10 0.00034 33.2 2.0 38 471-510 29-66 (130)
164 3rfe_A Platelet glycoprotein I 32.4 30 0.001 30.0 3.3 13 445-457 54-66 (130)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=5.3e-20 Score=190.80 Aligned_cols=212 Identities=18% Similarity=0.320 Sum_probs=93.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHH
Q 007516 363 PTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALV 442 (600)
Q Consensus 363 L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~ 442 (600)
+++|+|++|. +++.++..++..| ++|++|+|++|. +.+ ... ..+..+++|++|+|++|..+++.++..+.
T Consensus 95 L~~L~L~~~~-l~~~~~~~~~~~~--~~L~~L~L~~~~--l~~----~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 95 VQHMDLSNSV-IEVSTLHGILSQC--SKLQNLSLEGLR--LSD----PIV-NTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCEEECTTCE-ECHHHHHHHHTTB--CCCSEEECTTCB--CCH----HHH-HHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred CCEEEccCCC-cCHHHHHHHHhhC--CCCCEEeCcCcc--cCH----HHH-HHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 3444444443 4444444444444 455555555443 111 111 12233455555555554445444444444
Q ss_pred hcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc-CchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHH
Q 007516 443 TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ-SLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFV 521 (600)
Q Consensus 443 ~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~-~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll 521 (600)
..+++|++|+|++|..+++.++..+...++.+|++|+|++|. .+++..+...+..+++|+.|++++|..+++..+..+
T Consensus 165 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l- 243 (336)
T 2ast_B 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF- 243 (336)
T ss_dssp HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-
T ss_pred hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-
Confidence 445555555555543344444444444444125555555543 333333444444455555555555544444333322
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 522 YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 522 ~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
. .+++|++|+|++|..+++.++..+. .|++|+.|+|++| +++.++..+...++.|+ +++|.++.
T Consensus 244 ~-~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~l~~ 307 (336)
T 2ast_B 244 F-QLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSHFTT 307 (336)
T ss_dssp G-GCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred h-CCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcceE---EecccCcc
Confidence 1 1245555555554444444443333 3455555555554 44444444443333322 44444444
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.2e-20 Score=205.95 Aligned_cols=224 Identities=16% Similarity=0.124 Sum_probs=194.0
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCC----------
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICG---------- 429 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~---------- 429 (600)
.+++++|+|++|. +++.++..+...| ++|++|+|..+ +.+..+..+...|++|++|+|++
T Consensus 292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~--~~L~~L~L~~~-------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 292 AAQIRKLDLLYAL-LETEDHCTLIQKC--PNLEVLETRNV-------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGCCEEEETTCC-CCHHHHHHHHTTC--TTCCEEEEEGG-------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred cCCCcEEecCCCc-CCHHHHHHHHHhC--cCCCEEeccCc-------cCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 4578999999999 9999988888888 89999999844 45666777778899999999995
Q ss_pred cccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccC---ccCchh----hhHHHHHhcCCCCC
Q 007516 430 ACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYIND---CQSLNA----MLILPALRKLKHLE 502 (600)
Q Consensus 430 c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~---c~~l~d----~~i~~~l~~l~~Le 502 (600)
|..+++.++..+...|++|++|++ .|..+++.++..++..++ +|++|+|++ |..+++ .++...+..|++|+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLK-NLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCC-SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred cCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCC-CCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 899999999999999999999999 455799999999998788 599999984 556665 35667788899999
Q ss_pred EEEccCCC-CCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCcc
Q 007516 503 VLSVAGIE-TVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQ 581 (600)
Q Consensus 503 ~L~Ls~c~-~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk 581 (600)
.|+++.|. .+++..+..+.. .+++|+.|+|++| .+++.++..+...|++|+.|+|++|. +++.++..++..|++|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQ-YSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLR 516 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHH-SCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCC
T ss_pred EEEEecCCCCccHHHHHHHHH-hCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccC
Confidence 99998766 488888876644 4599999999987 69999999999999999999999997 89999999999999999
Q ss_pred EEEeeCCCCChhhhhcc
Q 007516 582 TLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 582 ~L~Ls~c~isD~~i~~f 598 (600)
+|+|++|.+++.+++.+
T Consensus 517 ~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 517 YLWVQGYRASMTGQDLM 533 (592)
T ss_dssp EEEEESCBCCTTCTTGG
T ss_pred eeECcCCcCCHHHHHHH
Confidence 99999999999987665
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=1.3e-19 Score=201.78 Aligned_cols=248 Identities=15% Similarity=0.196 Sum_probs=203.8
Q ss_pred HHHHHHHHHHhccCCCCCh---------hHHhhh--hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCC
Q 007516 334 DALRHKLSFMLCDSRQMNS---------HFLNLL--FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRC 402 (600)
Q Consensus 334 ~~~~~kL~~~L~~~~~Lt~---------~~l~l~--~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~ 402 (600)
......+...+..|..+.. ..+..+ ..+.+++|+|++|. +++.++..+...| ++|++|+|.+|.
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~--~~L~~L~l~~~~-- 325 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQC--PKLQRLWVLDYI-- 325 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTC--TTCCEEEEEGGG--
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcC--CCcCEEeCcCcc--
Confidence 3344444445556654432 223322 35789999999999 9999999888888 899999999882
Q ss_pred CCchhhHHHHHHHhcCCCCCCEEEc--------CCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhcccc
Q 007516 403 MPDYILLSTLASSLNSLPSLTTLSI--------CGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSF 474 (600)
Q Consensus 403 ~~D~~~~~~L~~~~~~l~~L~~L~L--------s~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~ 474 (600)
.+..+..+...|++|+.|+| .+|..+++.++..+...|++|+.|.++ |..+++.++..++..++ +
T Consensus 326 -----~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~-~ 398 (594)
T 2p1m_B 326 -----EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRP-N 398 (594)
T ss_dssp -----HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCT-T
T ss_pred -----CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCC-C
Confidence 34556667778999999999 557889999999999889999999665 45799999999988887 5
Q ss_pred ceEEEcc-----CccCch----hhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHH
Q 007516 475 IQELYIN-----DCQSLN----AMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLK 545 (600)
Q Consensus 475 L~~L~Ls-----~c~~l~----d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~ 545 (600)
|++|+|+ +|..++ +.++...+..|++|+.|+|++ .+++.++..+.. .+++|+.|+|++| .+++.++.
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~-~~~~L~~L~L~~~-~i~~~~~~ 474 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGT-YAKKMEMLSVAFA-GDSDLGMH 474 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHH-HCTTCCEEEEESC-CSSHHHHH
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHH-hchhccEeeccCC-CCcHHHHH
Confidence 9999999 677787 666777789999999999977 699988877654 3589999999997 59999999
Q ss_pred HHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhhcc
Q 007516 546 VIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 546 ~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~~f 598 (600)
.++..|++|+.|+|++|. +++.++..++..|++|++|+|++|++++.+++.+
T Consensus 475 ~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp HHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred HHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 998899999999999986 5999999899889999999999999998887654
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=7e-20 Score=189.85 Aligned_cols=228 Identities=21% Similarity=0.220 Sum_probs=183.7
Q ss_pred hHHhhhhCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCccc
Q 007516 353 HFLNLLFSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACR 432 (600)
Q Consensus 353 ~~l~l~~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~ 432 (600)
..+..+....++.|++.++. ++.... .++ . +++|++|+|++|. +....+...+..|++|++|+|++| .
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~-l~~~~~-~~~-~--~~~L~~L~L~~~~------l~~~~~~~~~~~~~~L~~L~L~~~-~ 129 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSF-MDQPLA-EHF-S--PFRVQHMDLSNSV------IEVSTLHGILSQCSKLQNLSLEGL-R 129 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCE-ECSCCC-SCC-C--CBCCCEEECTTCE------ECHHHHHHHHTTBCCCSEEECTTC-B
T ss_pred HHHHhhhhccceEEEcCCcc-ccccch-hhc-c--CCCCCEEEccCCC------cCHHHHHHHHhhCCCCCEEeCcCc-c
Confidence 33444445678889988874 222111 111 2 4899999999996 233446667789999999999996 6
Q ss_pred CChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC-CCCEEEccCCC-
Q 007516 433 ISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK-HLEVLSVAGIE- 510 (600)
Q Consensus 433 LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~-~Le~L~Ls~c~- 510 (600)
+++.....+.. +++|++|+|++|..+++.++..+...++ +|++|+|++|..+++..+...+..++ +|++|+|++|.
T Consensus 130 l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 130 LSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp CCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcc
Confidence 88888777765 9999999999997899888888777887 49999999997788776778889999 99999999996
Q ss_pred CCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCC
Q 007516 511 TVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (600)
Q Consensus 511 ~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~i 590 (600)
.+++..+..++.. +++|++|+|++|..+++..+..+. .+++|+.|+|++|..+++.++..+.. |++|++|+|++| +
T Consensus 208 ~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~-i 283 (336)
T 2ast_B 208 NLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI-V 283 (336)
T ss_dssp GSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS-S
T ss_pred cCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc-c
Confidence 5898888776655 499999999999779988887775 78999999999999999988866655 999999999999 8
Q ss_pred Chhhhhcc
Q 007516 591 RFVFHRDF 598 (600)
Q Consensus 591 sD~~i~~f 598 (600)
+++++..+
T Consensus 284 ~~~~~~~l 291 (336)
T 2ast_B 284 PDGTLQLL 291 (336)
T ss_dssp CTTCHHHH
T ss_pred CHHHHHHH
Confidence 88776543
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=1.9e-18 Score=192.49 Aligned_cols=208 Identities=17% Similarity=0.273 Sum_probs=173.6
Q ss_pred CCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEec
Q 007516 374 LTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINL 453 (600)
Q Consensus 374 Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~L 453 (600)
+....+..+...| ++|++|+|++|. + ....+..+...|++|+.|+|.+| +++.++..+...|++|++|+|
T Consensus 276 ~~~~~l~~~~~~~--~~L~~L~L~~~~--l----~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 276 AVPAYLPAVYSVC--SRLTTLNLSYAT--V----QSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CCGGGGGGGHHHH--TTCCEEECTTCC--C----CHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEE
T ss_pred cchhhHHHHHHhh--CCCCEEEccCCC--C----CHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEE
Confidence 4444555555566 799999999997 2 33446667789999999999987 788899999888999999999
Q ss_pred --------CCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEcc-----CCCCCC----hHH
Q 007516 454 --------SQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVA-----GIETVT----DEF 516 (600)
Q Consensus 454 --------s~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls-----~c~~lt----d~~ 516 (600)
..|..+++.++..++..|+ +|++|.+ +|..+++..+......+++|+.|+++ +|..++ +.+
T Consensus 346 ~~~~~~g~~~~~~l~~~~l~~l~~~~~-~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 346 FPSEPFVMEPNVALTEQGLVSVSMGCP-KLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp ECSCTTCSSCSSCCCHHHHHHHHHHCT-TCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred ecCcccccccCCCCCHHHHHHHHHhch-hHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 4566899999999988887 4999965 45578777666666789999999999 678888 778
Q ss_pred HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhh
Q 007516 517 VRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 517 l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
+..++..+ ++|++|+|++ .+++.++..++..+++|+.|+|++| .+++.++..++.+|++|++|+|++|.+++.++.
T Consensus 424 ~~~l~~~~-~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 424 FGAIVEHC-KDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHHHHHHC-TTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred HHHHHhhC-CCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 87776554 8999999976 8999999999988999999999997 599999999988899999999999999988765
Q ss_pred c
Q 007516 597 D 597 (600)
Q Consensus 597 ~ 597 (600)
.
T Consensus 500 ~ 500 (594)
T 2p1m_B 500 A 500 (594)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=5.5e-18 Score=188.85 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=180.6
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKAL 441 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L 441 (600)
.++.|.++++ ....+..++..| ++|++|+|++|. + ....+..++..|++|+.|+|. ..+++.++..+
T Consensus 271 ~L~~L~l~~~---~~~~l~~~~~~~--~~L~~L~Ls~~~--l----~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~ 337 (592)
T 3ogk_B 271 KLCRLGLSYM---GPNEMPILFPFA--AQIRKLDLLYAL--L----ETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVL 337 (592)
T ss_dssp TCCEEEETTC---CTTTGGGGGGGG--GGCCEEEETTCC--C----CHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHH
T ss_pred cccccCcccc---chhHHHHHHhhc--CCCcEEecCCCc--C----CHHHHHHHHHhCcCCCEEecc--CccCHHHHHHH
Confidence 4556666554 233455666667 899999999997 2 334455567899999999998 55889999999
Q ss_pred HhcCCCCcEEecCC----------CCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccC---
Q 007516 442 VTSAPALRSINLSQ----------CSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAG--- 508 (600)
Q Consensus 442 ~~~~p~L~~L~Ls~----------C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~--- 508 (600)
...|++|++|+|++ |..+++.++..+...|+ +|++|++ .|..+++..+......+++|+.|++.+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~-~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ-ELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT-TCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc-cCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 99999999999995 88899999999888888 4999999 566788776666666799999999984
Q ss_pred CCCCCh----HHHHHHHHhcCCCccEEEecCCCC-CChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEE
Q 007516 509 IETVTD----EFVRGFVYACGHNMKELILTDCVK-LTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTL 583 (600)
Q Consensus 509 c~~ltd----~~l~~Ll~~~~~sLk~L~Ls~C~~-LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L 583 (600)
|..+++ .++..++.. +++|++|+|++|.+ +++.++..+...|++|+.|+|++| .+++.++..++.+|++|++|
T Consensus 416 ~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEE
T ss_pred CccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCee
Confidence 556776 467666655 49999999998764 899999999989999999999986 59999999999999999999
Q ss_pred EeeCCCCChhhhhcc
Q 007516 584 KLCRNAFRFVFHRDF 598 (600)
Q Consensus 584 ~Ls~c~isD~~i~~f 598 (600)
+|++|+|++.++..+
T Consensus 494 ~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 494 EMRGCCFSERAIAAA 508 (592)
T ss_dssp EEESCCCBHHHHHHH
T ss_pred eccCCCCcHHHHHHH
Confidence 999999998876543
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.7e-16 Score=164.99 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=144.0
Q ss_pred CCCCcEEEecCCC--CCCH---HHHHHHHhh-CCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccC
Q 007516 360 SGSPTEIRLRDCS--WLTE---QEFTKAFVS-CDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRI 433 (600)
Q Consensus 360 ~~~L~~L~L~~C~--~Ltd---~~L~~L~~~-c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~L 433 (600)
.+.+++|+|++|. .++. .++..++.. ..+++|++|+|++|.. .+. ....+...+..+++|+.|+|++| .+
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~-~~~~l~~~l~~~~~L~~L~L~~n-~l 134 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF--GPT-AQEPLIDFLSKHTPLEHLYLHNN-GL 134 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC--CTT-THHHHHHHHHHCTTCCEEECCSS-CC
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC--CHH-HHHHHHHHHHhCCCCCEEECcCC-CC
Confidence 4567888888873 3332 344444321 1237888888888762 221 11234445567788888888874 46
Q ss_pred ChhhHHHHHhc---C---------CCCcEEecCCCCCCCchhHHHHHh---hccccceEEEccCccCchhhh---HHH-H
Q 007516 434 SDVGFKALVTS---A---------PALRSINLSQCSLLSSTSVDILAD---KLGSFIQELYINDCQSLNAML---ILP-A 494 (600)
Q Consensus 434 tD~~l~~L~~~---~---------p~L~~L~Ls~C~~Itd~~L~~L~~---~~~s~L~~L~Ls~c~~l~d~~---i~~-~ 494 (600)
++.+...+... + ++|++|+|++|. +++.++..++. .++ +|++|+|++|. +++.+ +.. .
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~-~L~~L~L~~n~-l~~~g~~~l~~~~ 211 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHR-LLHTVKMVQNG-IRPEGIEHLLLEG 211 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCT-TCCEEECCSSC-CCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCC-CcCEEECcCCC-CCHhHHHHHHHHH
Confidence 66555544432 2 788888888874 77666665443 444 58888888884 55433 233 5
Q ss_pred HhcCCCCCEEEccCCCCCChHHHHHHH--HhcCCCccEEEecCCCCCChHHHHHHHhc-----CCCccEEeecCCCCCCh
Q 007516 495 LRKLKHLEVLSVAGIETVTDEFVRGFV--YACGHNMKELILTDCVKLTDFSLKVIAET-----CPRLCTLDLSNLYKLTD 567 (600)
Q Consensus 495 l~~l~~Le~L~Ls~c~~ltd~~l~~Ll--~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~-----cp~L~~LdLs~C~~lTd 567 (600)
+..+++|+.|+|++|. +++.++..+. ...+++|++|+|++| .+++.+...+... +++|+.|+|++| .+++
T Consensus 212 l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~ 288 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIEL 288 (386)
T ss_dssp GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBH
T ss_pred hhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCH
Confidence 5678888888888877 7765544332 123478888888886 5887766655432 788888888885 5777
Q ss_pred HHHHHHH----hcCCCccEEEeeCCCCChhh
Q 007516 568 FGIGYLA----NGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 568 ~~l~~L~----~~c~~Lk~L~Ls~c~isD~~ 594 (600)
.++..+. ..+++|++|+|++|++++..
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 6544443 34788888888888888665
No 8
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=9.7e-16 Score=165.35 Aligned_cols=225 Identities=16% Similarity=0.194 Sum_probs=151.3
Q ss_pred CCcEEEecCCCCCCHHHHHHHH---hhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAF---VSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~---~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
.+++|+|++|. +++.++..+. ..| ++|++|+|++|. +.+.........+....++|++|+|++| .+++.++
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~--~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~ 159 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTL--PTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASC 159 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSC--TTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGH
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccC--CceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHH
Confidence 57788888876 6765544433 344 688888888776 2221111111222334567888888874 5666654
Q ss_pred HHH---HhcCCCCcEEecCCCCCCCchhHHHHHhhcc---ccceEEEccCccCchhh---hHHHHHhcCCCCCEEEccCC
Q 007516 439 KAL---VTSAPALRSINLSQCSLLSSTSVDILADKLG---SFIQELYINDCQSLNAM---LILPALRKLKHLEVLSVAGI 509 (600)
Q Consensus 439 ~~L---~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~---s~L~~L~Ls~c~~l~d~---~i~~~l~~l~~Le~L~Ls~c 509 (600)
..+ ...+++|++|+|++|. +++.++..++..+. ++|++|+|++|. +++. .+...+..+++|++|++++|
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 433 3347888888888875 77777776665432 258888888884 4433 24556778888999999888
Q ss_pred CCCChHHHHHHHHh---cCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEeecCCCCCChHHHHHHHhc----CCC
Q 007516 510 ETVTDEFVRGFVYA---CGHNMKELILTDCVKLTDFSLKVIA---ETCPRLCTLDLSNLYKLTDFGIGYLANG----CQA 579 (600)
Q Consensus 510 ~~ltd~~l~~Ll~~---~~~sLk~L~Ls~C~~LtD~~L~~L~---~~cp~L~~LdLs~C~~lTd~~l~~L~~~----c~~ 579 (600)
. +++.++..+... .+++|++|+|++| .+++.++..+. ..+++|++|+|++| .+++.+...++.. .++
T Consensus 238 ~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 238 K-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp B-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCC
T ss_pred c-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCcc
Confidence 5 777766555432 3478999999887 78887755444 35888999999986 6888877776654 358
Q ss_pred ccEEEeeCCCCChhhhhc
Q 007516 580 IQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 580 Lk~L~Ls~c~isD~~i~~ 597 (600)
|++|+|++|.+++.....
T Consensus 315 L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSH 332 (461)
T ss_dssp CCEEECTTSCCBGGGHHH
T ss_pred ceeeEcCCCCCchHHHHH
Confidence 999999999988875443
No 9
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=2.1e-15 Score=160.03 Aligned_cols=228 Identities=18% Similarity=0.200 Sum_probs=151.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhh-CCCCCCceeecCCCCCC-CCchh--hHHHHHHHhcCCCCCCEEEcCCcccCCh
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVS-CDTKNLTVLQLDRCGRC-MPDYI--LLSTLASSLNSLPSLTTLSICGACRISD 435 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~-c~l~~L~~L~Ls~c~~~-~~D~~--~~~~L~~~~~~l~~L~~L~Ls~c~~LtD 435 (600)
.+.+++|+|++|. +++.+...++.. ..+++|++|+|++|... +.+.+ ....+...+..+++|+.|+|++ +.+++
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD-NAFGP 108 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS-CCCCT
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC-CcCCH
Confidence 3557778888885 777776665531 11378888888887421 11111 1122334456788888888887 55776
Q ss_pred hhHHHH---HhcCCCCcEEecCCCCCCCchhHHHHHhhc------------cccceEEEccCccCchhhhHH---HHHhc
Q 007516 436 VGFKAL---VTSAPALRSINLSQCSLLSSTSVDILADKL------------GSFIQELYINDCQSLNAMLIL---PALRK 497 (600)
Q Consensus 436 ~~l~~L---~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~------------~s~L~~L~Ls~c~~l~d~~i~---~~l~~ 497 (600)
.++..+ ...+++|++|+|++|. +++.+...++..+ + +|++|+|++|. +++..+. ..+..
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~n~-l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGRNR-LENGSMKEWAKTFQS 185 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCSSC-CTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCCCC-CCcHHHHHHHHHHHh
Confidence 554432 3457888888888884 6665555554432 4 58888888885 4433333 46678
Q ss_pred CCCCCEEEccCCCCCChHHHHHHHH---hcCCCccEEEecCCCCCChHHHHHH---HhcCCCccEEeecCCCCCChHHHH
Q 007516 498 LKHLEVLSVAGIETVTDEFVRGFVY---ACGHNMKELILTDCVKLTDFSLKVI---AETCPRLCTLDLSNLYKLTDFGIG 571 (600)
Q Consensus 498 l~~Le~L~Ls~c~~ltd~~l~~Ll~---~~~~sLk~L~Ls~C~~LtD~~L~~L---~~~cp~L~~LdLs~C~~lTd~~l~ 571 (600)
+++|++|+|++|. +++.++..++. ..+++|+.|+|++| .+++.++..+ ...+++|+.|+|++| .+++.+..
T Consensus 186 ~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAA 262 (386)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHH
T ss_pred CCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHH
Confidence 8888888888886 78776555443 24478888888886 5776555444 356788888888886 58887766
Q ss_pred HHHhc-----CCCccEEEeeCCCCChhhh
Q 007516 572 YLANG-----CQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 572 ~L~~~-----c~~Lk~L~Ls~c~isD~~i 595 (600)
.++.. +++|++|+|++|.|++.++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~ 291 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAV 291 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHH
Confidence 65553 6788888888888888543
No 10
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=3.2e-15 Score=161.25 Aligned_cols=228 Identities=23% Similarity=0.293 Sum_probs=166.9
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCC--CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhh
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCD--TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVG 437 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~--l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~ 437 (600)
.+.+++|+|+++. +++.++..++..+. .++|++|+|++|. +.+.. ...+...+..+++|++|+|++| .+++.+
T Consensus 55 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~--i~~~~-~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 129 (461)
T 1z7x_W 55 NPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC--LTGAG-CGVLSSTLRTLPTLQELHLSDN-LLGDAG 129 (461)
T ss_dssp CTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC--CBGGG-HHHHHHHTTSCTTCCEEECCSS-BCHHHH
T ss_pred CCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC--CCHHH-HHHHHHHHccCCceeEEECCCC-cCchHH
Confidence 4778999999987 88888887777651 0169999999997 33211 1345566788999999999984 488888
Q ss_pred HHHHHhc----CCCCcEEecCCCCCCCchhHHHHHh---hccccceEEEccCccCchhhhHHHHHh----cCCCCCEEEc
Q 007516 438 FKALVTS----APALRSINLSQCSLLSSTSVDILAD---KLGSFIQELYINDCQSLNAMLILPALR----KLKHLEVLSV 506 (600)
Q Consensus 438 l~~L~~~----~p~L~~L~Ls~C~~Itd~~L~~L~~---~~~s~L~~L~Ls~c~~l~d~~i~~~l~----~l~~Le~L~L 506 (600)
+..+... .++|++|+|++| .+++.++..+.. .++ +|++|+|++|. +++..+..... .+++|+.|++
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP-DFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCT-TCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred HHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCC-CCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence 7776653 457999999998 578776655543 345 59999999986 55543322222 4669999999
Q ss_pred cCCCCCChHHHHHHHH--hcCCCccEEEecCCCCCChHHHHHHHh----cCCCccEEeecCCCCCChHHHHHHHh---cC
Q 007516 507 AGIETVTDEFVRGFVY--ACGHNMKELILTDCVKLTDFSLKVIAE----TCPRLCTLDLSNLYKLTDFGIGYLAN---GC 577 (600)
Q Consensus 507 s~c~~ltd~~l~~Ll~--~~~~sLk~L~Ls~C~~LtD~~L~~L~~----~cp~L~~LdLs~C~~lTd~~l~~L~~---~c 577 (600)
++|. +++.++..+.. ..+++|++|+|++| .+++.++..++. .+++|++|+|++| .+++.++..++. .+
T Consensus 207 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~ 283 (461)
T 1z7x_W 207 ESCG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAK 283 (461)
T ss_dssp TTSC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHC
T ss_pred cCCC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhC
Confidence 9996 77765433321 23489999999997 788888776654 4789999999997 799888655544 48
Q ss_pred CCccEEEeeCCCCChhhhhcc
Q 007516 578 QAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~~i~~f 598 (600)
++|++|+|++|.+++..+..+
T Consensus 284 ~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 284 ESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHH
T ss_pred CCcceEECCCCCCchHHHHHH
Confidence 999999999999988766543
No 11
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=2e-14 Score=151.48 Aligned_cols=222 Identities=16% Similarity=0.089 Sum_probs=156.5
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhh---CCCCCCceeecCCCCCCCCchhhHHHHHHHhcCC-CCCCEEEcCCcccCChhh
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVS---CDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSL-PSLTTLSICGACRISDVG 437 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~---c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l-~~L~~L~Ls~c~~LtD~~ 437 (600)
.+++|+|++|. +++.+...++.. + +++|++|+|++|. +.+. ....+...+..+ ++|+.|+|++ +.+++.+
T Consensus 52 ~L~~L~Ls~N~-l~~~~~~~l~~~l~~~-~~~L~~L~Ls~n~--l~~~-~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~ 125 (362)
T 3goz_A 52 SVTSLNLSGNS-LGFKNSDELVQILAAI-PANVTSLNLSGNF--LSYK-SSDELVKTLAAIPFTITVLDLGW-NDFSSKS 125 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTS-CTTCCEEECCSSC--GGGS-CHHHHHHHHHTSCTTCCEEECCS-SCGGGSC
T ss_pred ceeEEECcCCC-CCHHHHHHHHHHHhcc-CCCccEEECcCCc--CChH-HHHHHHHHHHhCCCCccEEECcC-CcCCcHH
Confidence 68889999985 676555444442 1 1689999999997 2322 223344444555 7999999998 4577777
Q ss_pred HHHHHhc----CCCCcEEecCCCCCCCchhHHHHHhh---ccccceEEEccCccCchhh---hHHHHHhcC-CCCCEEEc
Q 007516 438 FKALVTS----APALRSINLSQCSLLSSTSVDILADK---LGSFIQELYINDCQSLNAM---LILPALRKL-KHLEVLSV 506 (600)
Q Consensus 438 l~~L~~~----~p~L~~L~Ls~C~~Itd~~L~~L~~~---~~s~L~~L~Ls~c~~l~d~---~i~~~l~~l-~~Le~L~L 506 (600)
...+... +++|++|+|++| .+++.++..++.. ++.+|++|+|++|. +++. .+...+..+ ++|+.|+|
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEEC
Confidence 6665543 468999999998 5787777666544 33469999999995 4332 344556677 49999999
Q ss_pred cCCCCCChHHHHHH---HHhcCCCccEEEecCCCCCChHHHHH---HHhcCCCccEEeecCCC--CCChHHHHHHHhcC-
Q 007516 507 AGIETVTDEFVRGF---VYACGHNMKELILTDCVKLTDFSLKV---IAETCPRLCTLDLSNLY--KLTDFGIGYLANGC- 577 (600)
Q Consensus 507 s~c~~ltd~~l~~L---l~~~~~sLk~L~Ls~C~~LtD~~L~~---L~~~cp~L~~LdLs~C~--~lTd~~l~~L~~~c- 577 (600)
++|. +++.++..+ +....++|++|+|++| .+++.+... +...+++|+.|+|++|. .+++.++..+...+
T Consensus 204 s~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~ 281 (362)
T 3goz_A 204 SANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP 281 (362)
T ss_dssp TTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST
T ss_pred CCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc
Confidence 9987 776544333 2333468999999996 687755444 44567899999999874 58888888887654
Q ss_pred --CCccEEEeeCCCCChh
Q 007516 578 --QAIQTLKLCRNAFRFV 593 (600)
Q Consensus 578 --~~Lk~L~Ls~c~isD~ 593 (600)
++|+.|++++|.+.+.
T Consensus 282 ~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 282 NIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCEEEEECTTSCBCCGG
T ss_pred cCCceEEEecCCCcCCCc
Confidence 4688889999999887
No 12
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=5.7e-14 Score=147.99 Aligned_cols=224 Identities=16% Similarity=0.128 Sum_probs=157.5
Q ss_pred CCCcEEEecCCCCCCHHHHHHHH---hhCCCC-CCceeecCCCCCCCCchhhHHHHHHHhcC-CCCCCEEEcCCcccCCh
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAF---VSCDTK-NLTVLQLDRCGRCMPDYILLSTLASSLNS-LPSLTTLSICGACRISD 435 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~---~~c~l~-~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~-l~~L~~L~Ls~c~~LtD 435 (600)
..+++|+|++|. +++.+...++ ..+ + +|++|+|++|. +.+.. ...+...+.. +++|++|+|++| .+++
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~--~~~L~~L~Ls~N~--l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n-~l~~ 94 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANT--PASVTSLNLSGNS--LGFKN-SDELVQILAAIPANVTSLNLSGN-FLSY 94 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTC--CTTCCEEECCSSC--GGGSC-HHHHHHHHHTSCTTCCEEECCSS-CGGG
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhC--CCceeEEECcCCC--CCHHH-HHHHHHHHhccCCCccEEECcCC-cCCh
Confidence 348999999997 7765553333 333 6 89999999996 33322 2233334344 499999999995 4776
Q ss_pred hhHHHHHh---cC-CCCcEEecCCCCCCCchhHHHHHhhc---cccceEEEccCccCchhh---hHHHHHhcCC-CCCEE
Q 007516 436 VGFKALVT---SA-PALRSINLSQCSLLSSTSVDILADKL---GSFIQELYINDCQSLNAM---LILPALRKLK-HLEVL 504 (600)
Q Consensus 436 ~~l~~L~~---~~-p~L~~L~Ls~C~~Itd~~L~~L~~~~---~s~L~~L~Ls~c~~l~d~---~i~~~l~~l~-~Le~L 504 (600)
.+...++. .+ ++|+.|+|++|. +++.+...++..+ +.+|++|+|++|. +++. .+...+..++ +|+.|
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L 172 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSL 172 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEe
Confidence 66554443 34 899999999995 7887777666543 3479999999995 5433 3445566676 99999
Q ss_pred EccCCCCCChHHHHHH---HHhcCCCccEEEecCCCCCChHHHHHHHh----cCCCccEEeecCCCCCChHHHHHH---H
Q 007516 505 SVAGIETVTDEFVRGF---VYACGHNMKELILTDCVKLTDFSLKVIAE----TCPRLCTLDLSNLYKLTDFGIGYL---A 574 (600)
Q Consensus 505 ~Ls~c~~ltd~~l~~L---l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~----~cp~L~~LdLs~C~~lTd~~l~~L---~ 574 (600)
+|++|. +++.....+ +....++|++|+|++| .+++.++..+.. .+++|+.|+|++| .+++.+...+ .
T Consensus 173 ~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~ 249 (362)
T 3goz_A 173 NLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLK 249 (362)
T ss_dssp ECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTT
T ss_pred eecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHH
Confidence 999997 666544333 3333259999999997 688765554432 3569999999996 6888666444 4
Q ss_pred hcCCCccEEEeeCCC---CChhhhh
Q 007516 575 NGCQAIQTLKLCRNA---FRFVFHR 596 (600)
Q Consensus 575 ~~c~~Lk~L~Ls~c~---isD~~i~ 596 (600)
..+++|++|+|++|. +++..+.
T Consensus 250 ~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 250 DSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp TTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred hcCCCccEEEeccCCccccCHHHHH
Confidence 567899999999998 6665544
No 13
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=4.7e-13 Score=142.44 Aligned_cols=196 Identities=19% Similarity=0.182 Sum_probs=121.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHh-cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSL-NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~-~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
++|++|+|++|. +++... ..+...+ ..+++|++|+|++ +.+++.++..++..+++|+.|+|++| .+++.++..+
T Consensus 72 ~~L~~L~Ls~n~--l~~~~~-~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVR--MTPVKC-TVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSC--CCHHHH-HHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred hhCCEEEecCCC--CCHHHH-HHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 456666666665 222111 1222222 2345777777776 35777777777666677777777777 4777776666
Q ss_pred Hhhc---cccceEEEccCccCchhhh---HHHHHhcCCCCCEEEccCCCCCChHHHHHHHH--hcCCCccEEEecCCCCC
Q 007516 468 ADKL---GSFIQELYINDCQSLNAML---ILPALRKLKHLEVLSVAGIETVTDEFVRGFVY--ACGHNMKELILTDCVKL 539 (600)
Q Consensus 468 ~~~~---~s~L~~L~Ls~c~~l~d~~---i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~--~~~~sLk~L~Ls~C~~L 539 (600)
+..+ ..+|++|+|++|. +++.+ +...+..+++|++|+|++|. +++.++..+.. ...++|++|+|++| .|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence 5433 1257788887774 54432 33445677788888888876 77776654432 22367888888886 68
Q ss_pred ChHHHHHHHh---cCCCccEEeecCCCCCChHHHHHHHhcCC-C---ccEEE--eeCCCCChh
Q 007516 540 TDFSLKVIAE---TCPRLCTLDLSNLYKLTDFGIGYLANGCQ-A---IQTLK--LCRNAFRFV 593 (600)
Q Consensus 540 tD~~L~~L~~---~cp~L~~LdLs~C~~lTd~~l~~L~~~c~-~---Lk~L~--Ls~c~isD~ 593 (600)
++.+...++. .+++|+.|+|++| .|++.++..++.... . |+.+. +.++.++++
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 8877666653 4678888888885 588888887776321 2 66776 667777665
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=5.8e-13 Score=141.76 Aligned_cols=173 Identities=21% Similarity=0.203 Sum_probs=139.5
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhc----CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHH--
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTS----APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLIL-- 492 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~----~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~-- 492 (600)
++.|+.|+|++ +.+++.++..++.. +++|+.|+|++| .+++.++..++..++ +|++|+|++| .+++.+..
T Consensus 71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~-~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFL-RARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHH-TEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHH-hccHhhcCCC-CCCHHHHHHH
Confidence 46899999999 55888887776653 368999999999 589999988887777 5999999999 46554332
Q ss_pred -HHH-hcCCCCCEEEccCCCCCChHHHHHHHH--hcCCCccEEEecCCCCCChHHHHHHH---hcCCCccEEeecCCCCC
Q 007516 493 -PAL-RKLKHLEVLSVAGIETVTDEFVRGFVY--ACGHNMKELILTDCVKLTDFSLKVIA---ETCPRLCTLDLSNLYKL 565 (600)
Q Consensus 493 -~~l-~~l~~Le~L~Ls~c~~ltd~~l~~Ll~--~~~~sLk~L~Ls~C~~LtD~~L~~L~---~~cp~L~~LdLs~C~~l 565 (600)
..+ ..+++|++|+|++|. +++.++..+.. ...++|++|+|++| .+++.++..++ ..+++|+.|+|++| .|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence 233 357899999999997 88877766543 34589999999997 69998877765 45679999999996 79
Q ss_pred ChHHHHHHHh---cCCCccEEEeeCCCCChhhhhcc
Q 007516 566 TDFGIGYLAN---GCQAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 566 Td~~l~~L~~---~c~~Lk~L~Ls~c~isD~~i~~f 598 (600)
++.+...++. .+++|++|+|++|.|++.++..|
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 9998887766 46899999999999999887654
No 15
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.40 E-value=4.3e-13 Score=127.96 Aligned_cols=105 Identities=15% Similarity=0.170 Sum_probs=85.6
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHh--cCCCccEEEecCCCCCChHHHHHHHhcC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CGHNMKELILTDCVKLTDFSLKVIAETC 551 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~--~~~sLk~L~Ls~C~~LtD~~L~~L~~~c 551 (600)
.|++|+|++|. +++.++ ..+..|++|+.|+|++|..|+|.++..+... .+++|++|+|++|.+|||.++..++ .|
T Consensus 62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 47888888886 777655 3457888899999999988999998877642 2367999999999999999999987 68
Q ss_pred CCccEEeecCCCCCChHHH--HHHHhcCCCcc
Q 007516 552 PRLCTLDLSNLYKLTDFGI--GYLANGCQAIQ 581 (600)
Q Consensus 552 p~L~~LdLs~C~~lTd~~l--~~L~~~c~~Lk 581 (600)
++|++|+|++|++||+.++ ..+-..+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 9999999999999999774 56666788876
No 16
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.33 E-value=1.3e-12 Score=124.69 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=83.0
Q ss_pred CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhc---CCCccEEeecCCCCCChHHHHHHHhc
Q 007516 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAET---CPRLCTLDLSNLYKLTDFGIGYLANG 576 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~---cp~L~~LdLs~C~~lTd~~l~~L~~~ 576 (600)
.|+.|++++|. |+|.++..+ . .+++|++|+|++|..|||.++..|+.. |++|++|+|++|.+|||.|+..|+.
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L-~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~- 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHM-E-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH- 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGG-T-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred eEeEEeCcCCC-ccHHHHHHh-c-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence 69999999998 999999766 3 469999999999999999999999963 6799999999999999999999975
Q ss_pred CCCccEEEeeCC-CCChhh
Q 007516 577 CQAIQTLKLCRN-AFRFVF 594 (600)
Q Consensus 577 c~~Lk~L~Ls~c-~isD~~ 594 (600)
|++|++|+|++| .|+|.+
T Consensus 138 ~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CTTCCEEEEESCTTCCCHH
T ss_pred CCCCCEEECCCCCCCCchH
Confidence 999999999999 599865
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.31 E-value=2.6e-11 Score=125.88 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=72.1
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHh
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~ 496 (600)
..+++|+.|++++|. +++... ...+++|+.|++++|. ++.... ...++ +|++|+|++|. ++... .+.
T Consensus 174 ~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~---~~~~~-~L~~L~l~~n~-l~~~~---~~~ 240 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQ-ITDITP---VANMT-RLNSLKIGNNK-ITDLS---PLA 240 (347)
T ss_dssp GGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GGGCT-TCCEEECCSSC-CCCCG---GGT
T ss_pred ccCCCCCEEEccCCc-cccccc---ccCCCccceeecccCC-CCCCch---hhcCC-cCCEEEccCCc-cCCCc---chh
Confidence 445566666666532 332221 2335555555555552 332211 11223 36666666653 22211 155
Q ss_pred cCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhc
Q 007516 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (600)
Q Consensus 497 ~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~ 576 (600)
.+++|+.|++++|. +++. .. + ..+++|++|++++| .+++. . ....+++|+.|+|++| .+++.....+. .
T Consensus 241 ~l~~L~~L~l~~n~-l~~~--~~-~-~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~-~ 309 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQ-ISDI--NA-V-KDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNN-QLGNEDMEVIG-G 309 (347)
T ss_dssp TCTTCCEEECCSSC-CCCC--GG-G-TTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSS-CCCGGGHHHHH-T
T ss_pred cCCCCCEEECCCCc-cCCC--hh-H-hcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCC-cCCCcChhHhh-c
Confidence 56666666666654 3321 11 1 12356666666665 34432 1 1235566666666664 35544444333 3
Q ss_pred CCCccEEEeeCCCCCh
Q 007516 577 CQAIQTLKLCRNAFRF 592 (600)
Q Consensus 577 c~~Lk~L~Ls~c~isD 592 (600)
+++|++|+|++|++++
T Consensus 310 l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCSEEECCSSSCCC
T ss_pred cccCCEEEccCCcccc
Confidence 5666666666666554
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.29 E-value=3.3e-11 Score=125.09 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=138.4
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
..+.+++|++++|. ++.... ...+ ++|++|++++|.. .+. . ....+++|+.|++++| .+++...
T Consensus 153 ~l~~L~~L~l~~~~-~~~~~~---~~~l--~~L~~L~l~~n~l--~~~------~-~~~~l~~L~~L~l~~n-~l~~~~~ 216 (347)
T 4fmz_A 153 NMTGLNYLTVTESK-VKDVTP---IANL--TDLYSLSLNYNQI--EDI------S-PLASLTSLHYFTAYVN-QITDITP 216 (347)
T ss_dssp TCTTCCEEECCSSC-CCCCGG---GGGC--TTCSEEECTTSCC--CCC------G-GGGGCTTCCEEECCSS-CCCCCGG
T ss_pred hCCCCcEEEecCCC-cCCchh---hccC--CCCCEEEccCCcc--ccc------c-cccCCCccceeecccC-CCCCCch
Confidence 34567888888886 332211 3333 8999999999873 221 1 1467899999999985 5554433
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
...+++|+.|+|++|. ++.... ...++ +|++|+|++|. ++.. ..+..+++|+.|++++|. +++..
T Consensus 217 ---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~-~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~-- 281 (347)
T 4fmz_A 217 ---VANMTRLNSLKIGNNK-ITDLSP---LANLS-QLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDIS-- 281 (347)
T ss_dssp ---GGGCTTCCEEECCSSC-CCCCGG---GTTCT-TCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCCG--
T ss_pred ---hhcCCcCCEEEccCCc-cCCCcc---hhcCC-CCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCCh--
Confidence 4568999999999985 554332 33455 59999999995 4432 457889999999999996 65531
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
.+ ..+++|+.|+|++| .+++.....+. .+++|+.|+|++|. +++... ...+++|++|++++|+|+
T Consensus 282 -~~-~~l~~L~~L~L~~n-~l~~~~~~~l~-~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 -VL-NNLSQLNSLFLNNN-QLGNEDMEVIG-GLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GG-GGCTTCSEEECCSS-CCCGGGHHHHH-TCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC---
T ss_pred -hh-cCCCCCCEEECcCC-cCCCcChhHhh-ccccCCEEEccCCc-cccccC---hhhhhccceeehhhhccc
Confidence 12 34589999999997 67776666665 79999999999985 665432 456999999999999986
No 19
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.25 E-value=1.9e-11 Score=126.09 Aligned_cols=193 Identities=21% Similarity=0.298 Sum_probs=138.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|++++|. +++ +.. ...+ ++|++|+|++|.. .+. .. +..+++|+.|+|++|. +++..
T Consensus 40 l~~L~~L~l~~~~-i~~--l~~-~~~l--~~L~~L~L~~n~i--~~~------~~-~~~l~~L~~L~L~~n~-l~~~~-- 101 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTT--IEG-VQYL--NNLIGLELKDNQI--TDL------AP-LKNLTKITELELSGNP-LKNVS-- 101 (308)
T ss_dssp HHTCCEEECTTSC-CCC--CTT-GGGC--TTCCEEECCSSCC--CCC------GG-GTTCCSCCEEECCSCC-CSCCG--
T ss_pred cCCcCEEEeeCCC-ccC--chh-hhcc--CCCCEEEccCCcC--CCC------hh-HccCCCCCEEEccCCc-CCCch--
Confidence 3578899999996 443 222 2333 8999999999973 221 11 5789999999999954 65543
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
. ...+++|+.|+|++|. ++... .+ ..++ +|++|+|++|. ++.. ..+..+++|+.|++++|. +++.. .
T Consensus 102 ~-~~~l~~L~~L~l~~n~-l~~~~--~l-~~l~-~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n~-l~~~~--~ 168 (308)
T 1h6u_A 102 A-IAGLQSIKTLDLTSTQ-ITDVT--PL-AGLS-NLQVLYLDLNQ-ITNI---SPLAGLTNLQYLSIGNAQ-VSDLT--P 168 (308)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCCG--GG-TTCT-TCCEEECCSSC-CCCC---GGGGGCTTCCEEECCSSC-CCCCG--G
T ss_pred h-hcCCCCCCEEECCCCC-CCCch--hh-cCCC-CCCEEECCCCc-cCcC---ccccCCCCccEEEccCCc-CCCCh--h
Confidence 2 3458999999999985 55532 22 3455 59999999995 4332 127899999999999986 65432 1
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+ ..+++|+.|+|++| .+++... ...+++|+.|+|++| .+++.. . ...+++|+.|+|++|+++..
T Consensus 169 -l-~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 169 -L-ANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -G-TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEECC
T ss_pred -h-cCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeecC
Confidence 2 34589999999997 5665322 457999999999996 566544 2 45699999999999988763
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.24 E-value=7.2e-13 Score=138.08 Aligned_cols=182 Identities=18% Similarity=0.229 Sum_probs=82.3
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|++|.. . .++..+..+++|+.|+|++| .++. +...+..+++|+.|+|++|..++.... .+.
T Consensus 104 ~~L~~L~L~~n~l--~------~lp~~~~~l~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~ 171 (328)
T 4fcg_A 104 SHLQHMTIDAAGL--M------ELPDTMQQFAGLETLTLARN-PLRA--LPASIASLNRLRELSIRACPELTELPE-PLA 171 (328)
T ss_dssp TTCSEEEEESSCC--C------CCCSCGGGGTTCSEEEEESC-CCCC--CCGGGGGCTTCCEEEEEEETTCCCCCS-CSE
T ss_pred CCCCEEECCCCCc--c------chhHHHhccCCCCEEECCCC-cccc--CcHHHhcCcCCCEEECCCCCCccccCh-hHh
Confidence 5666666666542 1 11122345566666666653 3331 111123456666666666543322110 000
Q ss_pred --------hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCC
Q 007516 469 --------DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLT 540 (600)
Q Consensus 469 --------~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~Lt 540 (600)
..++ +|++|+|++|. ++ .+...+..+++|+.|+|++|. ++. +...+ ..+++|++|+|++|...+
T Consensus 172 ~~~~~~~~~~l~-~L~~L~L~~n~-l~--~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l-~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 172 STDASGEHQGLV-NLQSLRLEWTG-IR--SLPASIANLQNLKSLKIRNSP-LSA--LGPAI-HHLPKLEELDLRGCTALR 243 (328)
T ss_dssp EEC-CCCEEEST-TCCEEEEEEEC-CC--CCCGGGGGCTTCCEEEEESSC-CCC--CCGGG-GGCTTCCEEECTTCTTCC
T ss_pred hccchhhhccCC-CCCEEECcCCC-cC--cchHhhcCCCCCCEEEccCCC-CCc--Cchhh-ccCCCCCEEECcCCcchh
Confidence 0122 36666666653 22 122335556666666666654 331 10111 123566666666654332
Q ss_pred hHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 541 DFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 541 D~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
. +......+++|+.|+|++|..++.. ..-...+++|++|+|++|++....
T Consensus 244 ~--~p~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 244 N--YPPIFGGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp B--CCCCTTCCCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCCCC
T ss_pred h--hHHHhcCCCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchhhc
Confidence 2 1111224556666666665443321 111234566666666666554433
No 21
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.21 E-value=2.3e-12 Score=130.55 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=139.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|+++. ++..... .+..+ ++|++|+|+++.. ... ....+..+++|+.|+|+++..++.....
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~-~~~~~--~~L~~L~l~~n~l--~~~-----~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAA-SFRAC--RNLTILWLHSNVL--ARI-----DAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTT-TTTTC--TTCCEEECCSSCC--CEE-----CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCCceEEEeeCCc-CCccCHH-HcccC--CCCCEEECCCCcc--cee-----CHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4578899999986 5432111 12333 8999999999862 211 1123467899999999996546554333
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
.+ ..+++|+.|+|++|. ++......+ ..++ +|++|+|++|. ++.. ....+..+++|+.|+|+++. ++.....
T Consensus 100 ~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~- 171 (285)
T 1ozn_A 100 TF-HGLGRLHTLHLDRCG-LQELGPGLF-RGLA-ALQYLYLQDNA-LQAL-PDDTFRDLGNLTHLFLHGNR-ISSVPER- 171 (285)
T ss_dssp TT-TTCTTCCEEECTTSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCEECTT-
T ss_pred Hh-cCCcCCCEEECCCCc-CCEECHhHh-hCCc-CCCEEECCCCc-cccc-CHhHhccCCCccEEECCCCc-ccccCHH-
Confidence 33 358999999999984 444322222 2344 59999999985 3321 12346789999999999986 5532111
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.+ ..+++|++|+|++| .+++.....+ ..+++|+.|+|+++ .++...... ...+++|++|+|++|+++.
T Consensus 172 ~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AF-RGLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFAN-NLSALPTEA-LAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCHHH-HTTCTTCCEEECCSSCEEC
T ss_pred Hh-cCccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCC-cCCcCCHHH-cccCcccCEEeccCCCccC
Confidence 11 23489999999996 5665433333 36899999999996 577644333 4458999999999998864
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=6.9e-11 Score=125.36 Aligned_cols=215 Identities=15% Similarity=0.138 Sum_probs=142.2
Q ss_pred CCcEEEecCCCCCC-H---HHHHHHHh-hCCCCCCceeecCCCCCCCCc--hhhHHHHHHHhcCCCCCCEEEcCCcccCC
Q 007516 362 SPTEIRLRDCSWLT-E---QEFTKAFV-SCDTKNLTVLQLDRCGRCMPD--YILLSTLASSLNSLPSLTTLSICGACRIS 434 (600)
Q Consensus 362 ~L~~L~L~~C~~Lt-d---~~L~~L~~-~c~l~~L~~L~Ls~c~~~~~D--~~~~~~L~~~~~~l~~L~~L~Ls~c~~Lt 434 (600)
.++.|.+..+. .. + ..+..+.. .+.+++|+.|.|.....-..+ ++....+..++..+|+|+.|.|++|..+.
T Consensus 108 ~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 45788888665 33 1 23444432 112479999998653210000 01111244566789999999999874332
Q ss_pred hhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHh-hccccceEEEccCccC--chhh---hHHHHH--hcCCCCCEEEc
Q 007516 435 DVGFKALVTSAPALRSINLSQCSLLSSTSVDILAD-KLGSFIQELYINDCQS--LNAM---LILPAL--RKLKHLEVLSV 506 (600)
Q Consensus 435 D~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~-~~~s~L~~L~Ls~c~~--l~d~---~i~~~l--~~l~~Le~L~L 506 (600)
-.. + .+++|++|+|..| .+++.++..++. .+| +|++|+|+.+.. ..+. .+...+ ..+|+|++|+|
T Consensus 187 l~~---~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 187 IGK---K--PRPNLKSLEIISG-GLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp CCS---C--BCTTCSEEEEECS-BCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred ecc---c--cCCCCcEEEEecC-CCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 211 1 3689999999987 488888888875 466 599999864321 1111 112222 35899999999
Q ss_pred cCCCCCChHHHHHHHH-hcCCCccEEEecCCCCCChHHHHHHHh---cCCCccEEeecCCCCCChHHHHHHHhcCCCccE
Q 007516 507 AGIETVTDEFVRGFVY-ACGHNMKELILTDCVKLTDFSLKVIAE---TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQT 582 (600)
Q Consensus 507 s~c~~ltd~~l~~Ll~-~~~~sLk~L~Ls~C~~LtD~~L~~L~~---~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~ 582 (600)
.+|. +++.....+.. ..+++|++|+|+.| .+++.+...+.. .+++|+.|+|++| .|++.++..|...+ ...
T Consensus 260 ~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~ 334 (362)
T 2ra8_A 260 VDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMK 334 (362)
T ss_dssp ESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSE
T ss_pred CCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCE
Confidence 9887 77665554543 23478999999874 799988887763 5789999999987 69999999998755 456
Q ss_pred EEeeCCC
Q 007516 583 LKLCRNA 589 (600)
Q Consensus 583 L~Ls~c~ 589 (600)
++++.+.
T Consensus 335 ~~~~~~~ 341 (362)
T 2ra8_A 335 IDVSDSQ 341 (362)
T ss_dssp EECCSBC
T ss_pred EEecCCc
Confidence 7887765
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.16 E-value=1.5e-11 Score=132.37 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=118.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|++|. ++...... +.. +++|++|+|++|.. ..... -...+..+++|++|+|++| .++.....
T Consensus 78 l~~L~~L~Ls~n~-l~~~~~~~-~~~--l~~L~~L~L~~n~l--~~~~~---~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 147 (455)
T 3v47_A 78 LSSLIILKLDYNQ-FLQLETGA-FNG--LANLEVLTLTQCNL--DGAVL---SGNFFKPLTSLEMLVLRDN-NIKKIQPA 147 (455)
T ss_dssp CTTCCEEECTTCT-TCEECTTT-TTT--CTTCCEEECTTSCC--BTHHH---HSSTTTTCTTCCEEECCSS-BCCSCCCC
T ss_pred cccCCEEeCCCCc-cCccChhh-ccC--cccCCEEeCCCCCC--Ccccc---CcccccCcccCCEEECCCC-ccCccCcc
Confidence 3678899999886 44321111 222 37999999999873 21110 0112567899999999984 45544333
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHh---------------------------------hccccceEEEccCccCc
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILAD---------------------------------KLGSFIQELYINDCQSL 486 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~---------------------------------~~~s~L~~L~Ls~c~~l 486 (600)
.++..+++|+.|+|++|. ++......+.. .++ +|++|+|++|...
T Consensus 148 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFK 225 (455)
T ss_dssp GGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCC
T ss_pred cccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccc-eeeeEecCCCccc
Confidence 334568999999999884 33321111111 112 4777777776422
Q ss_pred hhhhHHHHHh---------------------------------------cCCCCCEEEccCCCCCChHHHHHHHHhcCCC
Q 007516 487 NAMLILPALR---------------------------------------KLKHLEVLSVAGIETVTDEFVRGFVYACGHN 527 (600)
Q Consensus 487 ~d~~i~~~l~---------------------------------------~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~s 527 (600)
. . +...+. .+++|+.|+++++. ++.... ..+ ..+++
T Consensus 226 ~-~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~-~~l~~ 300 (455)
T 3v47_A 226 E-S-MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLK-SVF-SHFTD 300 (455)
T ss_dssp H-H-HHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECT-TTT-TTCTT
T ss_pred c-c-chhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccch-hhc-ccCCC
Confidence 1 1 111111 11345555555544 322111 111 22367
Q ss_pred ccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhh
Q 007516 528 MKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 528 Lk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
|++|+|++| .+++.....+ ..+++|+.|+|++| .++.... .....+++|++|+|++|.++.....
T Consensus 301 L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 301 LEQLTLAQN-EINKIDDNAF-WGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp CCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSCCCEECTT
T ss_pred CCEEECCCC-cccccChhHh-cCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCcccccChh
Confidence 777777775 4544222222 35778888888875 4554322 2234578888888888888765433
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=128.63 Aligned_cols=158 Identities=18% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|+|+++. ++..... .+.. +++|++|+|++|.. .. + ....+..+++|++|+|+++ .++.....
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~-~~~~--l~~L~~L~Ls~n~l--~~-~----~~~~~~~l~~L~~L~L~~n-~l~~l~~~ 142 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEED-SFSS--LGSLEHLDLSYNYL--SN-L----SSSWFKPLSSLTFLNLLGN-PYKTLGET 142 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTT-TTTT--CTTCCEEECCSSCC--SS-C----CHHHHTTCTTCSEEECTTC-CCSSSCSS
T ss_pred CCCCCEEECCCCc-cCccCHh-hcCC--CCCCCEEECCCCcC--Cc-C----CHhHhCCCccCCEEECCCC-CCcccCch
Confidence 3556777777764 4431111 1222 26777777777752 11 1 1123456777778877773 34432211
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
..+..+++|+.|++++|..++......+. .++ +|++|++++|.. +.. ....+..+++|++|+++++. ++.. ..
T Consensus 143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~-~L~~L~l~~n~l-~~~-~~~~l~~l~~L~~L~l~~n~-l~~~--~~ 215 (353)
T 2z80_A 143 SLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLT-FLEELEIDASDL-QSY-EPKSLKSIQNVSHLILHMKQ-HILL--LE 215 (353)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTT-TCC-EEEEEEEEETTC-CEE-CTTTTTTCSEEEEEEEECSC-STTH--HH
T ss_pred hhhccCCCCcEEECCCCccccccCHHHcc-CCC-CCCEEECCCCCc-Ccc-CHHHHhccccCCeecCCCCc-cccc--hh
Confidence 12334677888888777544443222222 333 488888887742 221 12456677888888888876 4432 22
Q ss_pred HHHhcCCCccEEEecCC
Q 007516 520 FVYACGHNMKELILTDC 536 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C 536 (600)
.+...+++|+.|+|++|
T Consensus 216 ~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 216 IFVDVTSSVECLELRDT 232 (353)
T ss_dssp HHHHHTTTEEEEEEESC
T ss_pred hhhhhcccccEEECCCC
Confidence 22233478899988886
No 25
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=4.5e-12 Score=130.43 Aligned_cols=215 Identities=19% Similarity=0.140 Sum_probs=114.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...+++|+|++|. ++......++. ..+++|++|+|++|.. ........ ......+++|+.|+|++| .++.....
T Consensus 90 ~~~L~~L~l~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n~i--~~~~~~~~-~~~~~~~~~L~~L~Ls~n-~l~~~~~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLK-ITGTMPPLPLE-ATGLALSSLRLRNVSW--ATGRSWLA-ELQQWLKPGLKVLSIAQA-HSPAFSCE 163 (310)
T ss_dssp HSCCCEEEEESCC-CBSCCCCCSSS-CCCBCCSSCEEESCCC--SSTTSSHH-HHHTTBCSCCCEEEEECC-SSCCCCTT
T ss_pred cCceeEEEeeCCE-eccchhhhhhh-ccCCCCCEEEeecccc--cchhhhhH-HHHhhhccCCCEEEeeCC-CcchhhHH
Confidence 3557777777775 33211111110 1236777888877763 11100000 112236778888888774 34332222
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHH--HhhccccceEEEccCccCchhhhHHH-HHhcCCCCCEEEccCCCCCChHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDIL--ADKLGSFIQELYINDCQSLNAMLILP-ALRKLKHLEVLSVAGIETVTDEF 516 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L--~~~~~s~L~~L~Ls~c~~l~d~~i~~-~l~~l~~Le~L~Ls~c~~ltd~~ 516 (600)
. +..+++|++|+|++|...+..++... ...++ +|++|+|++|..-....+.. .+..+++|++|+|+++. +++..
T Consensus 164 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 240 (310)
T 4glp_A 164 Q-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATV 240 (310)
T ss_dssp S-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC
T ss_pred H-hccCCCCCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccc
Confidence 2 23467788888887753333332211 12344 48888888774321111112 34677888888887776 44321
Q ss_pred HHHHHHhc--CCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 517 VRGFVYAC--GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 517 l~~Ll~~~--~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
...+ ..+ .++|++|+|++| .++. +.. ..+++|+.|+|+++ .++... . ...+++|+.|+|++|+++|.
T Consensus 241 p~~~-~~~~~~~~L~~L~Ls~N-~l~~--lp~--~~~~~L~~L~Ls~N-~l~~~~--~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 241 NPSA-PRCMWSSALNSLNLSFA-GLEQ--VPK--GLPAKLRVLDLSSN-RLNRAP--Q-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp CSCC-SSCCCCTTCCCEECCSS-CCCS--CCS--CCCSCCSCEECCSC-CCCSCC--C-TTSCCCCSCEECSSTTTSCC
T ss_pred hhhH-HhccCcCcCCEEECCCC-CCCc--hhh--hhcCCCCEEECCCC-cCCCCc--h-hhhCCCccEEECcCCCCCCC
Confidence 0011 111 257888888775 4542 111 12367888888875 565421 1 34578888888888888774
No 26
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=1.8e-12 Score=133.46 Aligned_cols=214 Identities=14% Similarity=0.100 Sum_probs=140.2
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHh--cCCCCCCEEEcCCcccCChh
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSL--NSLPSLTTLSICGACRISDV 436 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~--~~l~~L~~L~Ls~c~~LtD~ 436 (600)
....++.|.+.++. +++..+..+.....+++|++|+|++|.. .... .... ..+++|+.|+|+++ .++..
T Consensus 62 ~~~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~-----~~~~~~~~~~~L~~L~Ls~n-~i~~~ 132 (310)
T 4glp_A 62 KALRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKI--TGTM-----PPLPLEATGLALSSLRLRNV-SWATG 132 (310)
T ss_dssp SSCCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCC--BSCC-----CCCSSSCCCBCCSSCEEESC-CCSST
T ss_pred hhcceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEe--ccch-----hhhhhhccCCCCCEEEeecc-cccch
Confidence 34456789999987 7887777766543336899999999973 1111 1112 67899999999984 45542
Q ss_pred ----hHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHH--HhcCCCCCEEEccCCC
Q 007516 437 ----GFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPA--LRKLKHLEVLSVAGIE 510 (600)
Q Consensus 437 ----~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~--l~~l~~Le~L~Ls~c~ 510 (600)
....+. .+++|++|+|++|. ++......+. .++ +|++|+|++|...+...+... +..+++|++|+|++|.
T Consensus 133 ~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~~~-~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 133 RSWLAELQQW-LKPGLKVLSIAQAH-SPAFSCEQVR-AFP-ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp TSSHHHHHTT-BCSCCCEEEEECCS-SCCCCTTSCC-CCT-TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred hhhhHHHHhh-hccCCCEEEeeCCC-cchhhHHHhc-cCC-CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 122333 68999999999985 4443222222 344 599999999975544333222 3688999999999997
Q ss_pred CCCh-HHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHh--cCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeC
Q 007516 511 TVTD-EFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAE--TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCR 587 (600)
Q Consensus 511 ~ltd-~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~--~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~ 587 (600)
++. ..+...+...+++|++|+|++| .+++.....+.. .+++|++|+|++| .++. +.. ..+++|++|+|++
T Consensus 209 -l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~--lp~--~~~~~L~~L~Ls~ 281 (310)
T 4glp_A 209 -METPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ--VPK--GLPAKLRVLDLSS 281 (310)
T ss_dssp -CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS--CCS--CCCSCCSCEECCS
T ss_pred -CCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCc--hhh--hhcCCCCEEECCC
Confidence 653 2221212234589999999996 565532111221 2379999999986 5662 211 1247999999999
Q ss_pred CCCCh
Q 007516 588 NAFRF 592 (600)
Q Consensus 588 c~isD 592 (600)
|.++.
T Consensus 282 N~l~~ 286 (310)
T 4glp_A 282 NRLNR 286 (310)
T ss_dssp CCCCS
T ss_pred CcCCC
Confidence 99986
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.15 E-value=1.1e-12 Score=134.24 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=123.2
Q ss_pred CCCCcEEEecCCCCCCHHH--HHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhh
Q 007516 360 SGSPTEIRLRDCSWLTEQE--FTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVG 437 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~--L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~ 437 (600)
.+.+++|+|+++. ++..+ ...+. .+ ++|++|+|++|.. .. +...+..+++|+.|+|+++ .++...
T Consensus 51 l~~L~~L~L~~n~-l~~~~~~~~~~~-~~--~~L~~L~Ls~n~i--~~------l~~~~~~l~~L~~L~l~~n-~l~~~~ 117 (306)
T 2z66_A 51 LTQLTKLSLSSNG-LSFKGCCSQSDF-GT--TSLKYLDLSFNGV--IT------MSSNFLGLEQLEHLDFQHS-NLKQMS 117 (306)
T ss_dssp CTTCSEEECCSSC-CCEEEEEEHHHH-SC--SCCCEEECCSCSE--EE------EEEEEETCTTCCEEECTTS-EEESST
T ss_pred cccCCEEECCCCc-cCcccCcccccc-cc--cccCEEECCCCcc--cc------ChhhcCCCCCCCEEECCCC-cccccc
Confidence 3567788888775 44221 01122 22 6888888887752 11 1112456788888888874 343332
Q ss_pred HHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHH
Q 007516 438 FKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFV 517 (600)
Q Consensus 438 l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l 517 (600)
.......+++|+.|+|++|. ++......+ ..++ +|++|+|++|. +....+...+..+++|+.|+++++. ++....
T Consensus 118 ~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~ 192 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDISHTH-TRVAFNGIF-NGLS-SLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP 192 (306)
T ss_dssp TTTTTTTCTTCCEEECTTSC-CEECSTTTT-TTCT-TCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT
T ss_pred cchhhhhccCCCEEECCCCc-CCccchhhc-ccCc-CCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcCH
Confidence 21223457888888888874 333221112 2344 58888888885 3321223456778889999988876 543211
Q ss_pred HHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcC-CCccEEEeeCCCCCh
Q 007516 518 RGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC-QAIQTLKLCRNAFRF 592 (600)
Q Consensus 518 ~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c-~~Lk~L~Ls~c~isD 592 (600)
.. + ..+++|++|+|++| .+++..... ...+++|+.|+|++| .++......+.. + ++|++|+|++|+++.
T Consensus 193 ~~-~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~-~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 193 TA-F-NSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLN-HIMTSKKQELQH-FPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp TT-T-TTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTS-CCCBCSSSSCCC-CCTTCCEEECTTCCEEC
T ss_pred HH-h-cCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCC-CCcccCHHHHHh-hhccCCEEEccCCCeec
Confidence 11 1 23478899999886 454422212 246788999999986 565543333333 4 488999999988764
No 28
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=128.71 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=140.9
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHH--HHhcCCCCCCEEEcCCcccCChhh
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLA--SSLNSLPSLTTLSICGACRISDVG 437 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~--~~~~~l~~L~~L~Ls~c~~LtD~~ 437 (600)
.+.+++|+|+++. ++.-.. ..+..+ ++|++|+|+++.. .. +. ..+..+++|+.|++++|..++...
T Consensus 99 l~~L~~L~Ls~n~-l~~~~~-~~~~~l--~~L~~L~L~~n~l--~~------l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 99 LGSLEHLDLSYNY-LSNLSS-SWFKPL--SSLTFLNLLGNPY--KT------LGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CTTCCEEECCSSC-CSSCCH-HHHTTC--TTCSEEECTTCCC--SS------SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCCCCEEECCCCc-CCcCCH-hHhCCC--ccCCEEECCCCCC--cc------cCchhhhccCCCCcEEECCCCccccccC
Confidence 3678999999985 443211 223333 8999999999863 11 11 134678999999999875565443
Q ss_pred HHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHH
Q 007516 438 FKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFV 517 (600)
Q Consensus 438 l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l 517 (600)
...+ ..+++|+.|+|++|. ++......+. .++ +|++|++++|. ++.. ....+..+++|+.|+++++. ++....
T Consensus 167 ~~~~-~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~-~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 167 RKDF-AGLTFLEELEIDASD-LQSYEPKSLK-SIQ-NVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp TTTT-TTCCEEEEEEEEETT-CCEECTTTTT-TCS-EEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCC
T ss_pred HHHc-cCCCCCCEEECCCCC-cCccCHHHHh-ccc-cCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccc
Confidence 2222 357899999999984 5543222332 344 59999999986 3322 12345568999999999886 543221
Q ss_pred HHHH-HhcCCCccEEEecCCCCCChHHHHHH---HhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 518 RGFV-YACGHNMKELILTDCVKLTDFSLKVI---AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 518 ~~Ll-~~~~~sLk~L~Ls~C~~LtD~~L~~L---~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
..+. ......|+.++|.++ .+++..+..+ ...+++|+.|+|++| .++... ..+...+++|++|+|++|+++..
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp C------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccC-HHHHhcCCCCCEEEeeCCCccCc
Confidence 1111 123478999999986 7888766554 357899999999996 566321 23335689999999999998765
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=1.2e-12 Score=133.95 Aligned_cols=213 Identities=19% Similarity=0.164 Sum_probs=110.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|+|+++. ++.-. ..++.. +++|++|+|+++.. ... .........+++|+.|+|+++. ++... .
T Consensus 28 ~~l~~L~L~~n~-l~~i~-~~~~~~--l~~L~~L~L~~n~l--~~~---~~~~~~~~~~~~L~~L~Ls~n~-i~~l~--~ 95 (306)
T 2z66_A 28 SSATRLELESNK-LQSLP-HGVFDK--LTQLTKLSLSSNGL--SFK---GCCSQSDFGTTSLKYLDLSFNG-VITMS--S 95 (306)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTT--CTTCSEEECCSSCC--CEE---EEEEHHHHSCSCCCEEECCSCS-EEEEE--E
T ss_pred CCCCEEECCCCc-cCccC-HhHhhc--cccCCEEECCCCcc--Ccc---cCcccccccccccCEEECCCCc-cccCh--h
Confidence 456677777764 33210 011222 36778888777752 110 0000112346777888887743 32211 1
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
....+++|++|+|++|. ++..........++ +|++|++++|..... ....+..+++|+.|+++++. +++..+...
T Consensus 96 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 170 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR-NLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNS-FQENFLPDI 170 (306)
T ss_dssp EEETCTTCCEEECTTSE-EESSTTTTTTTTCT-TCCEEECTTSCCEEC--STTTTTTCTTCCEEECTTCE-EGGGEECSC
T ss_pred hcCCCCCCCEEECCCCc-ccccccchhhhhcc-CCCEEECCCCcCCcc--chhhcccCcCCCEEECCCCc-cccccchhH
Confidence 12346778888877763 33221111122333 477888777742211 12345667778888877765 332111111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
+ ..+++|++|+|++| .+++.....+ ..+++|+.|+|+++ .++...... ...+++|++|+|++|.++....
T Consensus 171 ~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 171 F-TELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp C-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSCCCBCSS
T ss_pred H-hhCcCCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCCCcccCH
Confidence 1 22367778888775 4554322222 35677788888775 344322212 2346778888888777766443
No 30
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.12 E-value=6.4e-11 Score=113.76 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhc
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYAC 524 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~ 524 (600)
+++|+.|++++| .+++.. .+. .++ +|++|+|++|. ++.. ....+..+++|+.|++++|. +++.....+ ..
T Consensus 65 l~~L~~L~l~~n-~~~~~~--~l~-~l~-~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l--~~ 134 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN--PIS-GLS-NLERLRIMGKD-VTSD-KIPNLSGLTSLTLLDISHSA-HDDSILTKI--NT 134 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG--GGT-TCT-TCCEEEEECTT-CBGG-GSCCCTTCTTCCEEECCSSB-CBGGGHHHH--TT
T ss_pred CCCCCEEEccCC-CCCcch--hhh-cCC-CCCEEEeECCc-cCcc-cChhhcCCCCCCEEEecCCc-cCcHhHHHH--hh
Confidence 455566666555 233321 121 233 36666666653 2221 12335567777777777775 555444333 23
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 525 GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 525 ~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+++|++|+|++|..+++.. . ...+++|+.|+|++| .+++.. ....+++|++|++++|+|++
T Consensus 135 l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCEEEECBC----
T ss_pred CCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC-CCcChH---HhccCCCCCEEEeeCcccCC
Confidence 4778888888875466532 2 347888888888886 466532 23458889999999998765
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.11 E-value=5e-12 Score=136.48 Aligned_cols=205 Identities=19% Similarity=0.230 Sum_probs=105.4
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.++.|+|+++. ++..... .+.. +++|++|+|++|.. .. + ....+..+++|+.|+|++ +.++.....
T Consensus 88 ~~L~~L~Ls~n~-i~~i~~~-~~~~--l~~L~~L~L~~n~l--~~-~----~~~~~~~l~~L~~L~L~~-N~i~~~~~~- 154 (440)
T 3zyj_A 88 RHLEILQLSRNH-IRTIEIG-AFNG--LANLNTLELFDNRL--TT-I----PNGAFVYLSKLKELWLRN-NPIESIPSY- 154 (440)
T ss_dssp SSCCEEECCSSC-CCEECGG-GGTT--CSSCCEEECCSSCC--SS-C----CTTTSCSCSSCCEEECCS-CCCCEECTT-
T ss_pred CCCCEEECCCCc-CCccChh-hccC--CccCCEEECCCCcC--Ce-e----CHhHhhccccCceeeCCC-CcccccCHH-
Confidence 455666666664 3321111 1122 25666666666642 11 0 011234566677777766 334332211
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
.+..+++|+.|+|++|..++......+. .++ +|++|+|++|. ++.. ..+..+++|+.|+|+++. ++......
T Consensus 155 ~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~-~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~- 226 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRLSYISEGAFE-GLS-NLRYLNLAMCN-LREI---PNLTPLIKLDELDLSGNH-LSAIRPGS- 226 (440)
T ss_dssp TTTTCTTCCEEECCCCTTCCEECTTTTT-TCS-SCCEEECTTSC-CSSC---CCCTTCSSCCEEECTTSC-CCEECTTT-
T ss_pred HhhhCcccCEeCCCCCCCcceeCcchhh-ccc-ccCeecCCCCc-Cccc---cccCCCcccCEEECCCCc-cCccChhh-
Confidence 1234667777777766555443222222 333 47777777764 3321 235566777777777764 44321111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
+ ..+++|+.|+|++| .++......+ ..+++|+.|+|+++ .++.... .....+++|+.|+|++|++.
T Consensus 227 ~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 227 F-QGLMHLQKLWMIQS-QIQVIERNAF-DNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp T-TTCTTCCEEECTTC-CCCEECTTSS-TTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSCEE
T ss_pred h-ccCccCCEEECCCC-ceeEEChhhh-cCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCCcc
Confidence 1 22367777777775 4544322222 35677888888774 4553221 22344677888888777654
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.11 E-value=2.1e-11 Score=131.27 Aligned_cols=218 Identities=14% Similarity=0.131 Sum_probs=118.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...+++|+|++|.....-. ...+..+ ++|++|+|++|.. ... ....+..+++|++|+|++| .+++..+.
T Consensus 53 l~~L~~L~L~~n~~~~~i~-~~~~~~l--~~L~~L~Ls~n~l--~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 121 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIR-NNTFRGL--SSLIILKLDYNQF--LQL-----ETGAFNGLANLEVLTLTQC-NLDGAVLS 121 (455)
T ss_dssp CTTCCEEECCCCSTTCEEC-TTTTTTC--TTCCEEECTTCTT--CEE-----CTTTTTTCTTCCEEECTTS-CCBTHHHH
T ss_pred CccccEEECcCCcccceEC-ccccccc--ccCCEEeCCCCcc--Ccc-----ChhhccCcccCCEEeCCCC-CCCccccC
Confidence 3567888888875211100 1112223 7888888888862 111 1223467888888888884 45543332
Q ss_pred H-HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchh--hhHHH-----------------------
Q 007516 440 A-LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNA--MLILP----------------------- 493 (600)
Q Consensus 440 ~-L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d--~~i~~----------------------- 493 (600)
. .+..+++|++|+|++|. ++......+...++ +|++|+|++|..... ..+..
T Consensus 122 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~ 199 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMR-RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199 (455)
T ss_dssp SSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCT-TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred cccccCcccCCEEECCCCc-cCccCcccccCCCC-cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence 2 23457888888888874 44432222233444 588898888752211 10000
Q ss_pred -------HHhcCCCCCEEEccCCCCCChHHHHHHHHh-cC------------------------------------CCcc
Q 007516 494 -------ALRKLKHLEVLSVAGIETVTDEFVRGFVYA-CG------------------------------------HNMK 529 (600)
Q Consensus 494 -------~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~-~~------------------------------------~sLk 529 (600)
.+..+++|+.|+++++. ++......+... .. ++|+
T Consensus 200 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 278 (455)
T 3v47_A 200 LGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK 278 (455)
T ss_dssp TTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred ccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence 01234677888887776 555443333221 01 3455
Q ss_pred EEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 530 ELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 530 ~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
.|+|++| .++... ......+++|+.|+|++| .++...... ...+++|++|+|++|.++....
T Consensus 279 ~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 279 TCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQN-EINKIDDNA-FWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp EEECCSS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCCEECG
T ss_pred EEEecCc-cccccc-hhhcccCCCCCEEECCCC-cccccChhH-hcCcccCCEEECCCCccCCcCh
Confidence 5555543 233211 112235677888888875 455432222 2347788888888888765433
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.10 E-value=7.5e-12 Score=135.59 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=88.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|++|.. .. + ....+..+++|+.|+|++ +.++..... .+..+++|+.|+|++|..++......+.
T Consensus 123 ~~L~~L~L~~n~l--~~-~----~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~~~l~~L~~L~l~~~~~l~~i~~~~~~ 193 (452)
T 3zyi_A 123 ASLNTLELFDNWL--TV-I----PSGAFEYLSKLRELWLRN-NPIESIPSY-AFNRVPSLMRLDLGELKKLEYISEGAFE 193 (452)
T ss_dssp TTCCEEECCSSCC--SB-C----CTTTSSSCTTCCEEECCS-CCCCEECTT-TTTTCTTCCEEECCCCTTCCEECTTTTT
T ss_pred ccCCEEECCCCcC--Cc-c----ChhhhcccCCCCEEECCC-CCcceeCHh-HHhcCCcccEEeCCCCCCccccChhhcc
Confidence 5666666665542 11 0 011234456666666665 333322211 1223566666666665544433222221
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
.++ +|+.|+|++|. ++.. ..+..+++|+.|+|+++. ++...... + ..+++|+.|+|++| .++......+
T Consensus 194 -~l~-~L~~L~L~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~-~-~~l~~L~~L~L~~n-~l~~~~~~~~- 262 (452)
T 3zyi_A 194 -GLF-NLKYLNLGMCN-IKDM---PNLTPLVGLEELEMSGNH-FPEIRPGS-F-HGLSSLKKLWVMNS-QVSLIERNAF- 262 (452)
T ss_dssp -TCT-TCCEEECTTSC-CSSC---CCCTTCTTCCEEECTTSC-CSEECGGG-G-TTCTTCCEEECTTS-CCCEECTTTT-
T ss_pred -CCC-CCCEEECCCCc-cccc---ccccccccccEEECcCCc-CcccCccc-c-cCccCCCEEEeCCC-cCceECHHHh-
Confidence 233 46666666663 2221 234566667777776665 33221111 1 22366777777764 4443222222
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
..+++|+.|+|+++ .++... ......+++|+.|+|++|++.
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLP-HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCC-TTSSTTCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCC-cCCccC-hHHhccccCCCEEEccCCCcC
Confidence 35677777777774 454322 122234667777777777654
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.10 E-value=8.8e-12 Score=128.50 Aligned_cols=214 Identities=18% Similarity=0.135 Sum_probs=123.0
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHh-cCCCCCCEEEcCCcccCChhhH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSL-NSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~-~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
...+++|+|++|. ++......++ ...+++|++|+|+++.. ... ...+..+. ..+++|+.|+|++ +.++....
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~~~-~~~l~~L~~L~Ls~N~l--~~~--~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPPLL-EATGPDLNILNLRNVSW--ATR--DAWLAELQQWLKPGLKVLSIAQ-AHSLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCCSS-SCCSCCCSEEEEESCBC--SSS--SSHHHHHHTTCCTTCCEEEEES-CSCCCCCT
T ss_pred cCCccEEEccCCc-ccchhHHHHH-HhcCCCccEEEccCCCC--cch--hHHHHHHHHhhcCCCcEEEeeC-CCCccchH
Confidence 5678888888875 3321111111 01237888888888763 211 11222211 1247888888887 44544332
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhH-HHHH-hhccccceEEEccCccCchhhhH-HHHHhcCCCCCEEEccCCCCCChH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSV-DILA-DKLGSFIQELYINDCQSLNAMLI-LPALRKLKHLEVLSVAGIETVTDE 515 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L-~~L~-~~~~s~L~~L~Ls~c~~l~d~~i-~~~l~~l~~Le~L~Ls~c~~ltd~ 515 (600)
..+ ..+++|+.|+|++|...+..++ ..+. ..++ +|++|+|++|.......+ ...+..+++|+.|+++++. ++..
T Consensus 167 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~ 243 (312)
T 1wwl_A 167 EQV-RVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDA 243 (312)
T ss_dssp TTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSS
T ss_pred HHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcc
Confidence 222 3478888888888853332222 1221 3444 588888888853221112 2345677888888888876 4432
Q ss_pred HHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 516 FVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 516 ~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
..... ...+++|++|+|++| .++. +..- ..++|+.|+|+++ .+++. .. ...+++|++|+|++|++++.
T Consensus 244 ~~~~~-~~~l~~L~~L~Ls~N-~l~~--ip~~--~~~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 244 AGAPS-CDWPSQLNSLNLSFT-GLKQ--VPKG--LPAKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCSC-CCCCTTCCEEECTTS-CCSS--CCSS--CCSEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cchhh-hhhcCCCCEEECCCC-ccCh--hhhh--ccCCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCCCCCC
Confidence 10000 112378888888886 4552 1111 1167888999885 56654 22 44578899999999988764
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.09 E-value=7.4e-10 Score=120.35 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=75.5
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHh
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~ 496 (600)
..+++|+.|++++|. ++.... ...+++|+.|+|++|. ++.... + ..++ +|+.|+|++|. ++.. ..+.
T Consensus 240 ~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~--~-~~l~-~L~~L~L~~n~-l~~~---~~~~ 306 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTELKLGANQ-ISNISP--L-AGLT-ALTNLELNENQ-LEDI---SPIS 306 (466)
T ss_dssp GGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CCCCGG--G-TTCT-TCSEEECCSSC-CSCC---GGGG
T ss_pred hcCCCCCEEECCCCc-cccchh---hhcCCCCCEEECCCCc-cCcccc--c-cCCC-ccCeEEcCCCc-ccCc---hhhc
Confidence 345566666666532 322211 2345566666666653 332211 1 1233 36666666664 2221 1145
Q ss_pred cCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhc
Q 007516 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG 576 (600)
Q Consensus 497 ~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~ 576 (600)
.+++|+.|++++|. +++... + ..+++|+.|++++| .+++. ..+ ..|++|+.|+|++| .+++... ...
T Consensus 307 ~l~~L~~L~L~~n~-l~~~~~---~-~~l~~L~~L~l~~n-~l~~~--~~l-~~l~~L~~L~l~~n-~l~~~~~---~~~ 373 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN-ISDISP---V-SSLTKLQRLFFYNN-KVSDV--SSL-ANLTNINWLSAGHN-QISDLTP---LAN 373 (466)
T ss_dssp GCTTCSEEECCSSC-CSCCGG---G-GGCTTCCEEECCSS-CCCCC--GGG-TTCTTCCEEECCSS-CCCBCGG---GTT
T ss_pred CCCCCCEEECcCCc-CCCchh---h-ccCccCCEeECCCC-ccCCc--hhh-ccCCCCCEEeCCCC-ccCccch---hhc
Confidence 66666666666664 333211 1 23366666666665 44442 222 35666777777765 3444322 344
Q ss_pred CCCccEEEeeCCCCCh
Q 007516 577 CQAIQTLKLCRNAFRF 592 (600)
Q Consensus 577 c~~Lk~L~Ls~c~isD 592 (600)
+++|+.|++++|.++.
T Consensus 374 l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 LTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCCEEEEC
T ss_pred CCCCCEEeccCCcccC
Confidence 6677777777766554
No 36
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=1.1e-11 Score=138.67 Aligned_cols=188 Identities=18% Similarity=0.198 Sum_probs=94.0
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|++++|.. .... .....+..+++|+.|++++| .++...... +..+++|+.|+|++|. ++........
T Consensus 350 ~~L~~L~l~~n~l--~~~~---~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~ 421 (606)
T 3t6q_A 350 ENLRELDLSHDDI--ETSD---CCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQLELLDLAFTR-LKVKDAQSPF 421 (606)
T ss_dssp TTCCEEECCSSCC--CEEE---ESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTTCSEEECTTCC-EECCTTCCTT
T ss_pred CcCCEEECCCCcc--cccc---CcchhcccCCCCCEEECCCC-cCCcCCHHH-hcCCccCCeEECCCCc-CCCcccchhh
Confidence 5666666666652 1100 00112345666666666663 232221111 2235667777776663 2221111111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH-HHHhcCCCccEEEecCCCCCChHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG-FVYACGHNMKELILTDCVKLTDFSLKVI 547 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~-Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L 547 (600)
..++ +|+.|+|++|..... ....+..+++|+.|+++++. +++..+.. -....+++|+.|+|++| .++......+
T Consensus 422 ~~l~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 496 (606)
T 3t6q_A 422 QNLH-LLKVLNLSHSLLDIS--SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAF 496 (606)
T ss_dssp TTCT-TCCEEECTTCCCBTT--CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTT
T ss_pred hCcc-cCCEEECCCCccCCc--CHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChhhh
Confidence 2333 477777777642211 12345567777777777765 33311100 00122367777777776 4443222222
Q ss_pred HhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 548 AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 548 ~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
..+++|+.|+|++| .++......+. .+++| +|+|++|.++..
T Consensus 497 -~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 497 -TSLKMMNHVDLSHN-RLTSSSIEALS-HLKGI-YLNLASNHISII 538 (606)
T ss_dssp -TTCTTCCEEECCSS-CCCGGGGGGGT-TCCSC-EEECCSSCCCCC
T ss_pred -ccccCCCEEECCCC-ccCcCChhHhC-ccccc-EEECcCCccccc
Confidence 35677777777775 56654433333 36677 777777776643
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=2.8e-11 Score=125.23 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=119.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|++|. ++..... .+.. +++|++|+|+++.. .. + . ....++|++|++++ +.++.....
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~-~~~~--l~~L~~L~Ls~n~l--~~-l-----~--~~~~~~L~~L~l~~-n~l~~~~~~ 139 (330)
T 1xku_A 75 LKNLHTLILINNK-ISKISPG-AFAP--LVKLERLYLSKNQL--KE-L-----P--EKMPKTLQELRVHE-NEITKVRKS 139 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTT-TTTT--CTTCCEEECCSSCC--SB-C-----C--SSCCTTCCEEECCS-SCCCBBCHH
T ss_pred CCCCCEEECCCCc-CCeeCHH-HhcC--CCCCCEEECCCCcC--Cc-c-----C--hhhcccccEEECCC-CcccccCHh
Confidence 3556777777764 3321111 1122 26777777777652 11 0 0 01225777777776 445544333
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhH-HHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSV-DILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L-~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
.+ ..+++|+.|+|++|. ++..++ ......++ +|++|++++|. ++.. .. ...++|+.|+++++. ++.....
T Consensus 140 ~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~-~L~~L~l~~n~-l~~l--~~--~~~~~L~~L~l~~n~-l~~~~~~ 210 (330)
T 1xku_A 140 VF-NGLNQMIVVELGTNP-LKSSGIENGAFQGMK-KLSYIRIADTN-ITTI--PQ--GLPPSLTELHLDGNK-ITKVDAA 210 (330)
T ss_dssp HH-TTCTTCCEEECCSSC-CCGGGBCTTGGGGCT-TCCEEECCSSC-CCSC--CS--SCCTTCSEEECTTSC-CCEECTG
T ss_pred Hh-cCCccccEEECCCCc-CCccCcChhhccCCC-CcCEEECCCCc-cccC--Cc--cccccCCEEECCCCc-CCccCHH
Confidence 33 457888888888774 332111 11122344 48888888775 2221 11 123688888888876 5443211
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhhcc
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~~f 598 (600)
. + ..+++|+.|+|++| .+++.....+ ..+++|+.|+|++| .++. +..-...+++|++|+|++|.|+......|
T Consensus 211 ~-~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 211 S-L-KGLNNLAKLGLSFN-SISAVDNGSL-ANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp G-G-TTCTTCCEEECCSS-CCCEECTTTG-GGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred H-h-cCCCCCCEEECCCC-cCceeChhhc-cCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCCcCCccChhhc
Confidence 1 1 23488999999986 4654332223 36889999999996 4552 22223458899999999999887654444
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.09 E-value=4.8e-10 Score=115.53 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=126.0
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|++++|.. .+ +. .+..+++|+.|+|++| .+++... ...+++|+.|+|++|. ++... .+.
T Consensus 41 ~~L~~L~l~~~~i--~~------l~-~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~--~~~ 104 (308)
T 1h6u_A 41 DGITTLSAFGTGV--TT------IE-GVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNVS--AIA 104 (308)
T ss_dssp HTCCEEECTTSCC--CC------CT-TGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCCG--GGT
T ss_pred CCcCEEEeeCCCc--cC------ch-hhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCch--hhc
Confidence 6999999999973 21 11 2467899999999985 5665443 4568999999999985 55532 232
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
.++ +|++|+|++|. ++.. ..+..+++|+.|+++++. +++... + ..+++|++|+|++| .+++... .
T Consensus 105 -~l~-~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~---l-~~l~~L~~L~l~~n-~l~~~~~---l 169 (308)
T 1h6u_A 105 -GLQ-SIKTLDLTSTQ-ITDV---TPLAGLSNLQVLYLDLNQ-ITNISP---L-AGLTNLQYLSIGNA-QVSDLTP---L 169 (308)
T ss_dssp -TCT-TCCEEECTTSC-CCCC---GGGTTCTTCCEEECCSSC-CCCCGG---G-GGCTTCCEEECCSS-CCCCCGG---G
T ss_pred -CCC-CCCEEECCCCC-CCCc---hhhcCCCCCCEEECCCCc-cCcCcc---c-cCCCCccEEEccCC-cCCCChh---h
Confidence 444 59999999996 4432 237899999999999987 554321 2 34589999999997 5665322 4
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
..+++|+.|+|++| .+++... ...+++|++|+|++|.+++..
T Consensus 170 ~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 170 ANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp TTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSCCCBCG
T ss_pred cCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCccCccc
Confidence 57999999999996 5665332 456899999999999998653
No 39
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.09 E-value=1e-11 Score=134.01 Aligned_cols=208 Identities=16% Similarity=0.204 Sum_probs=128.3
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
..++.|+|+++. ++...... +.. +++|++|+|++|.. .. +. ...+..+++|+.|+|+++ .++......
T Consensus 64 ~~l~~L~L~~n~-i~~~~~~~-~~~--l~~L~~L~Ls~n~i--~~-i~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIKVNS-FKH--LRHLEILQLSRNHI--RT-IE----IGAFNGLANLNTLELFDN-RLTTIPNGA 131 (440)
T ss_dssp TTCSEEECCSCC-CCEECTTT-TSS--CSSCCEEECCSSCC--CE-EC----GGGGTTCSSCCEEECCSS-CCSSCCTTT
T ss_pred CCCcEEEccCCc-CCeeCHHH-hhC--CCCCCEEECCCCcC--Cc-cC----hhhccCCccCCEEECCCC-cCCeeCHhH
Confidence 566788888875 44321111 223 37889999988862 21 11 123467888999999884 555332222
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
+..+++|+.|+|++|. ++...-..+ ..++ +|+.|+|++|..+.... ...+..+++|+.|+|+++. ++.- ..+
T Consensus 132 -~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l~-~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~~~ 203 (440)
T 3zyj_A 132 -FVYLSKLKELWLRNNP-IESIPSYAF-NRIP-SLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMCN-LREI--PNL 203 (440)
T ss_dssp -SCSCSSCCEEECCSCC-CCEECTTTT-TTCT-TCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTSC-CSSC--CCC
T ss_pred -hhccccCceeeCCCCc-ccccCHHHh-hhCc-ccCEeCCCCCCCcceeC-cchhhcccccCeecCCCCc-Cccc--ccc
Confidence 2357888999998874 443322222 2344 58899998876554321 1246678889999988886 4421 111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
..+++|+.|+|++| .++......+ ..+++|+.|+|+++ .++...... ...+++|++|+|++|.++...
T Consensus 204 --~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 204 --TPLIKLDELDLSGN-HLSAIRPGSF-QGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp --TTCSSCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTSCCCCCC
T ss_pred --CCCcccCEEECCCC-ccCccChhhh-ccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCCCCCccC
Confidence 23478889999886 5654322223 36788899999885 566543222 235788999999888877543
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.08 E-value=4.9e-10 Score=121.78 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=137.0
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|++++|. +++- .. ...+ ++|++|++++|.. .+.. ....+++|+.|++++| .+++.+
T Consensus 176 l~~L~~L~l~~n~-l~~~--~~-l~~l--~~L~~L~l~~n~l--~~~~-------~~~~l~~L~~L~l~~n-~l~~~~-- 237 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDI--SV-LAKL--TNLESLIATNNQI--SDIT-------PLGILTNLDELSLNGN-QLKDIG-- 237 (466)
T ss_dssp CTTCCEEECCSSC-CCCC--GG-GGGC--TTCSEEECCSSCC--CCCG-------GGGGCTTCCEEECCSS-CCCCCG--
T ss_pred CCCCCEEECcCCc-CCCC--hh-hccC--CCCCEEEecCCcc--cccc-------cccccCCCCEEECCCC-Ccccch--
Confidence 4678899999997 4432 11 2333 8999999999973 2211 1456899999999995 455432
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
. ...+++|+.|+|++|. ++.... ...++ +|+.|++++|. ++.. ..+..+++|+.|++++|. +++.. .
T Consensus 238 ~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~-~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L~~n~-l~~~~--~ 304 (466)
T 1o6v_A 238 T-LASLTNLTDLDLANNQ-ISNLAP---LSGLT-KLTELKLGANQ-ISNI---SPLAGLTALTNLELNENQ-LEDIS--P 304 (466)
T ss_dssp G-GGGCTTCSEEECCSSC-CCCCGG---GTTCT-TCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSSC-CSCCG--G
T ss_pred h-hhcCCCCCEEECCCCc-cccchh---hhcCC-CCCEEECCCCc-cCcc---ccccCCCccCeEEcCCCc-ccCch--h
Confidence 2 3468999999999985 443321 23455 59999999995 3332 127789999999999987 54422 1
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
+ ..+++|+.|+|++| .+++... ...+++|+.|++++| .+++. .. ...|++|+.|++++|.+++..
T Consensus 305 -~-~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 305 -I-SNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SS-LANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp -G-GGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCBCG
T ss_pred -h-cCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--hh-hccCCCCCEEeCCCCccCccc
Confidence 2 34589999999997 5655322 358999999999997 56653 23 345899999999999998754
No 41
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.08 E-value=1.8e-11 Score=123.95 Aligned_cols=186 Identities=17% Similarity=0.138 Sum_probs=127.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|+++.. ... ....+..+++|+.|+|+++ .++......+ ..+++|+.|+|++|..++......+.
T Consensus 32 ~~l~~L~l~~n~i--~~~-----~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNRI--SHV-----PAASFRACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp TTCSEEECTTSCC--CEE-----CTTTTTTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred CCceEEEeeCCcC--Ccc-----CHHHcccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCccccCHHHhc
Confidence 7999999999873 221 1123467899999999984 5665433333 35899999999998646554333332
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
.++ +|++|+|++|.. +.. ....+..+++|+.|+++++. ++.... ..+ ..+++|++|+|++| .++......+
T Consensus 103 -~l~-~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~-~~l~~L~~L~l~~n-~l~~~~~~~~- 173 (285)
T 1ozn_A 103 -GLG-RLHTLHLDRCGL-QEL-GPGLFRGLAALQYLYLQDNA-LQALPD-DTF-RDLGNLTHLFLHGN-RISSVPERAF- 173 (285)
T ss_dssp -TCT-TCCEEECTTSCC-CCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCCEECTTTT-
T ss_pred -CCc-CCCEEECCCCcC-CEE-CHhHhhCCcCCCEEECCCCc-ccccCH-hHh-ccCCCccEEECCCC-cccccCHHHh-
Confidence 344 599999999963 321 12456789999999999986 443211 111 23489999999996 5664322223
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
..+++|+.|+|+++ .++......+ ..+++|++|+|++|.+++..
T Consensus 174 ~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 174 RGLHSLDRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCC
T ss_pred cCccccCEEECCCC-cccccCHhHc-cCcccccEeeCCCCcCCcCC
Confidence 36899999999996 5665433333 35899999999999988754
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.07 E-value=1.4e-11 Score=133.46 Aligned_cols=208 Identities=16% Similarity=0.173 Sum_probs=129.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.++.|+|+++. ++...... +.. +++|+.|+|++|.. ... ....+..+++|+.|+|+++ .++.....
T Consensus 75 ~~l~~L~L~~n~-i~~~~~~~-~~~--l~~L~~L~Ls~n~i--~~~-----~~~~~~~l~~L~~L~L~~n-~l~~~~~~- 141 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQADT-FRH--LHHLEVLQLGRNSI--RQI-----EVGAFNGLASLNTLELFDN-WLTVIPSG- 141 (452)
T ss_dssp TTCSEEECCSSC-CCEECTTT-TTT--CTTCCEEECCSSCC--CEE-----CTTTTTTCTTCCEEECCSS-CCSBCCTT-
T ss_pred CCccEEECcCCc-CceECHHH-cCC--CCCCCEEECCCCcc--CCc-----ChhhccCcccCCEEECCCC-cCCccChh-
Confidence 567788888875 44321111 222 37899999988862 211 1123467888999999884 45533222
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
.+..+++|+.|+|++|. ++......+ ..++ +|+.|+|++|..++... ...+..+++|+.|+|+++. +++. ..+
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~-~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~~~ 214 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAF-NRVP-SLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMCN-IKDM--PNL 214 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTT-TTCT-TCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTSC-CSSC--CCC
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHH-hcCC-cccEEeCCCCCCccccC-hhhccCCCCCCEEECCCCc-cccc--ccc
Confidence 23357889999998884 543322222 2444 59999998876665431 1246678889999998886 4432 111
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
..+++|+.|+|++| .++...... ...+++|+.|+|+++ .++...... ...+++|+.|+|++|.++...
T Consensus 215 --~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 215 --TPLVGLEELEMSGN-HFPEIRPGS-FHGLSSLKKLWVMNS-QVSLIERNA-FDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp --TTCTTCCEEECTTS-CCSEECGGG-GTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSSCCSCCC
T ss_pred --cccccccEEECcCC-cCcccCccc-ccCccCCCEEEeCCC-cCceECHHH-hcCCCCCCEEECCCCcCCccC
Confidence 23478999999886 565432222 336888999999885 565433222 345788999999999877543
No 43
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=4.7e-10 Score=118.95 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=105.3
Q ss_pred CCCcEEEecCCCC-------CCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccC
Q 007516 361 GSPTEIRLRDCSW-------LTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRI 433 (600)
Q Consensus 361 ~~L~~L~L~~C~~-------Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~L 433 (600)
++|+.|.|.+... +....+..+...+ |+|+.|.|.+|.. +. +.. ..+++|+.|.|.. ..+
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~--P~L~~L~L~g~~~-l~-------l~~--~~~~~L~~L~L~~-~~l 205 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM--PLLNNLKIKGTNN-LS-------IGK--KPRPNLKSLEIIS-GGL 205 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC--TTCCEEEEECCBT-CB-------CCS--CBCTTCSEEEEEC-SBC
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcC--CCCcEEEEeCCCC-ce-------ecc--ccCCCCcEEEEec-CCC
Confidence 4677777754311 1112344555555 7888888877632 00 011 1367888888875 457
Q ss_pred ChhhHHHHHh-cCCCCcEEecCCCC--CCCchhHHHHHh-----hccccceEEEccCccCchhhhHHHHH--hcCCCCCE
Q 007516 434 SDVGFKALVT-SAPALRSINLSQCS--LLSSTSVDILAD-----KLGSFIQELYINDCQSLNAMLILPAL--RKLKHLEV 503 (600)
Q Consensus 434 tD~~l~~L~~-~~p~L~~L~Ls~C~--~Itd~~L~~L~~-----~~~s~L~~L~Ls~c~~l~d~~i~~~l--~~l~~Le~ 503 (600)
++.++..++. .+|+|++|+|+.+. ...+.++..+.. .+| +|++|+|.+|. +++....... ..+++|++
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p-~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-NLKWLGIVDAE-EQNVVVEMFLESDILPQLET 283 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT-TCCEEEEESCT-THHHHHHHHHHCSSGGGCSE
T ss_pred ChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC-CcCEEeCCCCC-CchHHHHHHHhCccCCCCCE
Confidence 7777777764 47888888875321 112222222221 244 58888887774 3332111111 25677888
Q ss_pred EEccCCCCCChHHHHHHHH--hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecC
Q 007516 504 LSVAGIETVTDEFVRGFVY--ACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSN 561 (600)
Q Consensus 504 L~Ls~c~~ltd~~l~~Ll~--~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~ 561 (600)
|+|+.+. +++.+...+.. ..+++|+.|+|++| .+++.++..|...+ ...++++.
T Consensus 284 LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 284 MDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp EECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCS
T ss_pred EECCCCC-CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecC
Confidence 8886654 77776655542 23477888888776 58888877777544 45567765
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.06 E-value=2.7e-10 Score=116.47 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=46.0
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L 554 (600)
|++|+|++|. ++.. ..+..+++|+.|+++++. +++. ..+ ..+++|++|+|++| .+++... ...+++|
T Consensus 114 L~~L~L~~n~-i~~~---~~l~~l~~L~~L~l~~n~-l~~~---~~l-~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L 180 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI---TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKL 180 (291)
T ss_dssp CCEEECTTSC-CCCC---GGGGGCTTCCEEECCSSC-CCCC---GGG-GGCTTCSEEECCSS-CCCCCGG---GTTCTTC
T ss_pred CCEEECCCCc-CCCC---hhhcCCCCCCEEEccCCc-CCcc---hhh-ccCCCCCEEEccCC-ccccchh---hcCCCcc
Confidence 5555555543 2221 234445555555555544 3321 011 12355555555554 3433211 2345556
Q ss_pred cEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 555 ~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+.|+|++| .+++. .. ...+++|+.|++++|++++
T Consensus 181 ~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 181 QNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CEEECCSS-CCCBC--GG-GTTCTTCSEEEEEEEEEEC
T ss_pred CEEECCCC-cCCCC--hh-hccCCCCCEEECcCCcccC
Confidence 66666654 34432 12 2335566666666665544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.05 E-value=1.8e-11 Score=127.51 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=137.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...+++|+|+++. ++. +...+..+ ++|++|+|++|.. . .++..+..+++|+.|+|++|..++....
T Consensus 103 l~~L~~L~L~~n~-l~~--lp~~~~~l--~~L~~L~Ls~n~l--~------~lp~~l~~l~~L~~L~L~~n~~~~~~p~- 168 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LME--LPDTMQQF--AGLETLTLARNPL--R------ALPASIASLNRLRELSIRACPELTELPE- 168 (328)
T ss_dssp GTTCSEEEEESSC-CCC--CCSCGGGG--TTCSEEEEESCCC--C------CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred CCCCCEEECCCCC-ccc--hhHHHhcc--CCCCEEECCCCcc--c------cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence 4678999999986 441 22222333 8999999999973 2 1223457899999999999765543221
Q ss_pred HH--------HhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCC
Q 007516 440 AL--------VTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIET 511 (600)
Q Consensus 440 ~L--------~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ 511 (600)
.+ +..+++|+.|+|++|. ++... .. ...++ +|++|+|++|... . +...+..+++|+.|+|++|..
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-~~-l~~l~-~L~~L~L~~N~l~-~--l~~~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTG-IRSLP-AS-IANLQ-NLKSLKIRNSPLS-A--LGPAIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEEC-CCCCC-GG-GGGCT-TCCEEEEESSCCC-C--CCGGGGGCTTCCEEECTTCTT
T ss_pred hHhhccchhhhccCCCCCEEECcCCC-cCcch-Hh-hcCCC-CCCEEEccCCCCC-c--CchhhccCCCCCEEECcCCcc
Confidence 11 1248999999999984 54221 11 23455 5999999999633 2 334578999999999999874
Q ss_pred CChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 512 VTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 512 ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
.... ...+ ..+++|++|+|++|..++.. ..-...+++|+.|+|++|..++. +......+++|+.+++..+.+.
T Consensus 242 ~~~~--p~~~-~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~--iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNY--PPIF-GGRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSR--LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBC--CCCT-TCCCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCCC--CCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhh--HHHh-cCCCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchhh--ccHHHhhccCceEEeCCHHHHH
Confidence 4321 1111 23489999999998655432 11234799999999999876553 2333445899999999876543
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.05 E-value=3.2e-11 Score=124.31 Aligned_cols=189 Identities=19% Similarity=0.182 Sum_probs=124.8
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChh--hHHHHHh-cCCCCcEEecCCCCCCCchhH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDV--GFKALVT-SAPALRSINLSQCSLLSSTSV 464 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~--~l~~L~~-~~p~L~~L~Ls~C~~Itd~~L 464 (600)
+++|++|+|++|.. ...+.. .+ +...+++|+.|+|++ +.++.. .+..+.. .+++|++|+|++|. ++....
T Consensus 94 l~~L~~L~L~~n~l--~~~~~~-~~--~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~ 166 (312)
T 1wwl_A 94 ISGLQELTLENLEV--TGTAPP-PL--LEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSC 166 (312)
T ss_dssp TSCCCEEEEEEEBC--BSCCCC-CS--SSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCT
T ss_pred cCCccEEEccCCcc--cchhHH-HH--HHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchH
Confidence 48999999999973 111100 00 136789999999998 456554 2222221 13899999999985 554332
Q ss_pred HHHHhhccccceEEEccCccCchhhhHHHHH--hcCCCCCEEEccCCCCCCh-HHHHHHHHhcCCCccEEEecCCCCCCh
Q 007516 465 DILADKLGSFIQELYINDCQSLNAMLILPAL--RKLKHLEVLSVAGIETVTD-EFVRGFVYACGHNMKELILTDCVKLTD 541 (600)
Q Consensus 465 ~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l--~~l~~Le~L~Ls~c~~ltd-~~l~~Ll~~~~~sLk~L~Ls~C~~LtD 541 (600)
..+. .++ +|++|+|++|...+...+...+ ..+++|+.|+++++. ++. ..+...+...+++|++|+|++| .+++
T Consensus 167 ~~~~-~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 167 EQVR-VFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp TTCC-CCS-SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCS
T ss_pred HHhc-cCC-CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCc
Confidence 3333 344 5999999999755544344444 789999999999997 653 2222222334589999999996 5654
Q ss_pred HHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcC-CCccEEEeeCCCCChh
Q 007516 542 FSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC-QAIQTLKLCRNAFRFV 593 (600)
Q Consensus 542 ~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c-~~Lk~L~Ls~c~isD~ 593 (600)
.........+++|+.|+|++| .++. + .... ++|++|+|++|.|++.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N-~l~~--i---p~~~~~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFT-GLKQ--V---PKGLPAKLSVLDLSYNRLDRN 289 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTS-CCSS--C---CSSCCSEEEEEECCSSCCCSC
T ss_pred ccchhhhhhcCCCCEEECCCC-ccCh--h---hhhccCCceEEECCCCCCCCC
Confidence 321112235689999999996 5662 1 1222 6899999999999864
No 47
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.04 E-value=4.9e-11 Score=120.48 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=126.9
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...++.|++.++. +++ +..+ ..+ ++|++|+|++|.. .+ + ..+..+++|+.|+|++| .++.....
T Consensus 40 l~~L~~L~l~~~~-i~~--~~~l-~~l--~~L~~L~l~~n~l--~~------~-~~l~~l~~L~~L~L~~n-~l~~~~~~ 103 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKS--VQGI-QYL--PNVRYLALGGNKL--HD------I-SALKELTNLTYLILTGN-QLQSLPNG 103 (272)
T ss_dssp HTTCCEEECTTSC-CCC--CTTG-GGC--TTCCEEECTTSCC--CC------C-GGGTTCTTCCEEECTTS-CCCCCCTT
T ss_pred ccceeeeeeCCCC-ccc--cccc-ccC--CCCcEEECCCCCC--CC------c-hhhcCCCCCCEEECCCC-ccCccChh
Confidence 4567889998886 432 1122 233 8999999998873 22 1 13467899999999984 45543322
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
.+..+++|+.|+|++|. ++......+ ..++ +|++|+|++|. ++.. ....+..+++|+.|++++|. ++.... .
T Consensus 104 -~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~-~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~ 175 (272)
T 3rfs_A 104 -VFDKLTNLKELVLVENQ-LQSLPDGVF-DKLT-NLTYLNLAHNQ-LQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPE-G 175 (272)
T ss_dssp -TTTTCTTCCEEECTTSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-T
T ss_pred -HhcCCcCCCEEECCCCc-CCccCHHHh-ccCC-CCCEEECCCCc-cCcc-CHHHhccCccCCEEECCCCC-cCccCH-H
Confidence 22457899999999884 443222112 2344 59999999884 4322 12335788899999998886 543211 1
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
.+ ..+++|++|+|++| .++.... .....+++|+.|+|++++. + ..|++|+.|+++.|.++.....
T Consensus 176 ~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~-~--------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 176 VF-DKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPW-D--------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp TT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCB-C--------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred Hh-cCCccCCEEECCCC-cCCccCH-HHHhCCcCCCEEEccCCCc-c--------ccCcHHHHHHHHHHhCCCcccC
Confidence 11 23478999999886 4554221 2234688999999998643 2 2377788888877777655433
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=2.8e-10 Score=128.50 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=44.2
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L 554 (600)
|+.|+|++|. +... ..+..|++|+.|+|++|. +++. ..+ ..+++|+.|+|++| .+++... ...|++|
T Consensus 111 L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~l---~~l-~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L 177 (605)
T 1m9s_A 111 LKSLSLEHNG-ISDI---NGLVHLPQLESLYLGNNK-ITDI---TVL-SRLTKLDTLSLEDN-QISDIVP---LAGLTKL 177 (605)
T ss_dssp CCEEECTTSC-CCCC---GGGGGCTTCSEEECCSSC-CCCC---GGG-GSCTTCSEEECCSS-CCCCCGG---GTTCTTC
T ss_pred CCEEEecCCC-CCCC---ccccCCCccCEEECCCCc-cCCc---hhh-cccCCCCEEECcCC-cCCCchh---hccCCCC
Confidence 5555555553 2211 224445555555555544 3321 111 12355555555554 3333211 2345555
Q ss_pred cEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 555 ~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+.|+|++| .|++. .. ...|++|+.|+|++|++++.
T Consensus 178 ~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 178 QNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEEEECC
T ss_pred CEEECcCC-CCCCC--hH-HccCCCCCEEEccCCcCcCC
Confidence 55555554 34432 11 22355555555555554443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.04 E-value=5.1e-11 Score=129.42 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=77.4
Q ss_pred CCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhc
Q 007516 418 SLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRK 497 (600)
Q Consensus 418 ~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~ 497 (600)
.+++|+.|+|++| .++......+ ..+++|+.|+|++|. ++......+. .++ +|+.|+|++|..+... ......
T Consensus 150 ~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~L~~L~l~~n~-i~~~~~~~~~-~l~-~L~~L~l~~~~~~~~~--~~~~~~ 222 (477)
T 2id5_A 150 GLNSLEQLTLEKC-NLTSIPTEAL-SHLHGLIVLRLRHLN-INAIRDYSFK-RLY-RLKVLEISHWPYLDTM--TPNCLY 222 (477)
T ss_dssp TCTTCCEEEEESC-CCSSCCHHHH-TTCTTCCEEEEESCC-CCEECTTCSC-SCT-TCCEEEEECCTTCCEE--CTTTTT
T ss_pred CCCCCCEEECCCC-cCcccChhHh-cccCCCcEEeCCCCc-CcEeChhhcc-cCc-ccceeeCCCCcccccc--Cccccc
Confidence 4455555555542 3333222222 234555555555542 2221111111 222 3566666555433221 111222
Q ss_pred CCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcC
Q 007516 498 LKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC 577 (600)
Q Consensus 498 l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c 577 (600)
..+|+.|+|+++. ++...... + ..+++|+.|+|++| .++......+ ..+++|+.|+|+++ .++...... ...+
T Consensus 223 ~~~L~~L~l~~n~-l~~~~~~~-~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~-~~~l 295 (477)
T 2id5_A 223 GLNLTSLSITHCN-LTAVPYLA-V-RHLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGG-QLAVVEPYA-FRGL 295 (477)
T ss_dssp TCCCSEEEEESSC-CCSCCHHH-H-TTCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSS-CCSEECTTT-BTTC
T ss_pred CccccEEECcCCc-ccccCHHH-h-cCccccCeeECCCC-cCCccChhhc-cccccCCEEECCCC-ccceECHHH-hcCc
Confidence 3366666666654 43222111 1 23467777777775 3443222222 35677777777774 455432222 2347
Q ss_pred CCccEEEeeCCCCChh
Q 007516 578 QAIQTLKLCRNAFRFV 593 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~ 593 (600)
++|++|+|++|.++..
T Consensus 296 ~~L~~L~L~~N~l~~~ 311 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTL 311 (477)
T ss_dssp TTCCEEECCSSCCSCC
T ss_pred ccCCEEECCCCcCcee
Confidence 7888888888877654
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.03 E-value=1.2e-11 Score=138.24 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=101.0
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|++|.. .. +...+..+++|+.|++++|. ++.......+..+++|+.|+|++|. ++......+
T Consensus 376 ~~L~~L~L~~n~l--~~------~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~- 444 (606)
T 3vq2_A 376 NSLRHLDLSFNGA--II------MSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIF- 444 (606)
T ss_dssp SCCCEEECCSCSE--EE------ECCCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTT-
T ss_pred CcccEeECCCCcc--cc------chhhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCC-CCccchhhh-
Confidence 5666666666641 10 11233456677777777643 3222211122346777777777774 333211112
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
..++ +|++|+|++|. ++...+...+..+++|+.|+|++|. ++..... .+ ..+++|++|+|++| .+++.....+
T Consensus 445 ~~l~-~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~-~~l~~L~~L~Ls~N-~l~~~~~~~~- 517 (606)
T 3vq2_A 445 LGLT-SLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWG-VF-DTLHRLQLLNMSHN-NLLFLDSSHY- 517 (606)
T ss_dssp TTCT-TCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TT-TTCTTCCEEECCSS-CCSCEEGGGT-
T ss_pred cCCC-CCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChh-hh-cccccCCEEECCCC-cCCCcCHHHc-
Confidence 2334 48888888774 3321123446677888888888875 4432111 11 23478888888886 4554322222
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCC-CccEEEeeCCCCCh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQ-AIQTLKLCRNAFRF 592 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~-~Lk~L~Ls~c~isD 592 (600)
..+++|+.|+|++| .++.. ..-...++ +|++|++++|++.-
T Consensus 518 ~~l~~L~~L~l~~N-~l~~~--p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 518 NQLYSLSTLDCSFN-RIETS--KGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCTTCCEEECTTS-CCCCE--ESCGGGSCTTCCEEECCSCCCCC
T ss_pred cCCCcCCEEECCCC-cCccc--CHhHhhhcccCcEEEccCCCccc
Confidence 36778888888886 45532 11133455 58888888887764
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=7.6e-12 Score=138.34 Aligned_cols=210 Identities=18% Similarity=0.145 Sum_probs=129.2
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|++.+|........ .. +++|+.|+|++|.. .... .+......+++|+.|++++|. ++.....
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~--~~~L~~L~l~~n~l--~~~~---~~~~~~~~~~~L~~L~l~~n~-l~~~~~~ 391 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VD--LPSLEFLDLSRNGL--SFKG---CCSQSDFGTTSLKYLDLSFNG-VITMSSN 391 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CB--CTTCCEEECCSSCC--BEEE---EEEHHHHTCSCCCEEECCSCS-EEEEEEE
T ss_pred ccccCEEeCcCCcccccccc----cc--CCCCCEEeCcCCcc--Cccc---cccccccccCccCEEECCCCc-ccccccc
Confidence 35567777777753221110 22 37888888888863 1100 001233568888999988854 3322211
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
...+++|+.|+|++|. ++..........++ +|++|+|++|..... ....+..+++|+.|++++|. +++..+..
T Consensus 392 --~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~p~ 464 (570)
T 2z63_A 392 --FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR-NLIYLDISHTHTRVA--FNGIFNGLSSLEVLKMAGNS-FQENFLPD 464 (570)
T ss_dssp --EETCTTCCEEECTTSE-EESCTTSCTTTTCT-TCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCE-EGGGEECS
T ss_pred --ccccCCCCEEEccCCc-cccccchhhhhcCC-CCCEEeCcCCccccc--chhhhhcCCcCcEEECcCCc-Cccccchh
Confidence 3457889999998874 33221111223444 599999999853322 23456788999999999886 44322222
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
.+ ..+++|+.|+|++| .+++.....+ ..+++|+.|+|++| .++.... .....+++|++|++++|+++..
T Consensus 465 ~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 465 IF-TELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMASN-QLKSVPD-GIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CC-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBCCC
T ss_pred hh-hcccCCCEEECCCC-ccccCChhhh-hcccCCCEEeCCCC-cCCCCCH-HHhhcccCCcEEEecCCcccCC
Confidence 22 23489999999997 5665333333 36899999999996 5664322 2234588999999999988754
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=2.7e-11 Score=135.32 Aligned_cols=216 Identities=21% Similarity=0.224 Sum_probs=120.9
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|++++|. ++. +...+.. +++|++|+|++|.. ... ....+..+++|+.|++++|.........
T Consensus 278 ~~L~~L~l~~n~-l~~--lp~~l~~--l~~L~~L~l~~n~l--~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~- 344 (606)
T 3t6q_A 278 SGLQELDLTATH-LSE--LPSGLVG--LSTLKKLVLSANKF--ENL-----CQISASNFPSLTHLSIKGNTKRLELGTG- 344 (606)
T ss_dssp TTCSEEECTTSC-CSC--CCSSCCS--CTTCCEEECTTCCC--SBG-----GGGCGGGCTTCSEEECCSCSSCCBCCSS-
T ss_pred cCCCEEeccCCc-cCC--CChhhcc--cccCCEEECccCCc--CcC-----chhhhhccCcCCEEECCCCCcccccchh-
Confidence 456677777764 331 1111122 36777777777752 111 1123456777777777775322111111
Q ss_pred HHhcCCCCcEEecCCCCCCCchhH-HHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSV-DILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L-~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
....+++|+.|+|++|. ++.... ......++ +|++|+|++|..... ....+..+++|+.|+++++. ++......
T Consensus 345 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~~ 419 (606)
T 3t6q_A 345 CLENLENLRELDLSHDD-IETSDCCNLQLRNLS-HLQSLNLSYNEPLSL--KTEAFKECPQLELLDLAFTR-LKVKDAQS 419 (606)
T ss_dssp TTTTCTTCCEEECCSSC-CCEEEESTTTTTTCT-TCCEEECCSCSCEEE--CTTTTTTCTTCSEEECTTCC-EECCTTCC
T ss_pred hhhccCcCCEEECCCCc-cccccCcchhcccCC-CCCEEECCCCcCCcC--CHHHhcCCccCCeEECCCCc-CCCcccch
Confidence 12346778888888774 443220 11122344 488888888753221 12346678888888888876 32211111
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHH--HHHhcCCCccEEEeeCCCCChhhhhc
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIG--YLANGCQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~--~L~~~c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
.+ ..+++|+.|+|++| .++...... ...+++|+.|+|++| .+++..+. .....+++|++|+|++|.++......
T Consensus 420 ~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 420 PF-QNLHLLKVLNLSHS-LLDISSEQL-FDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp TT-TTCTTCCEEECTTC-CCBTTCTTT-TTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred hh-hCcccCCEEECCCC-ccCCcCHHH-HhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence 11 23478999999886 344322222 336889999999986 45542221 22445889999999999888654333
Q ss_pred c
Q 007516 598 F 598 (600)
Q Consensus 598 f 598 (600)
|
T Consensus 496 ~ 496 (606)
T 3t6q_A 496 F 496 (606)
T ss_dssp T
T ss_pred h
Confidence 3
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.03 E-value=7.4e-11 Score=128.17 Aligned_cols=212 Identities=18% Similarity=0.206 Sum_probs=114.7
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|+|+++. ++.-.. ..+..+ ++|++|+|++|.. ... ....+..+++|+.|+|++ +.++......
T Consensus 80 ~~L~~L~L~~n~-l~~~~~-~~~~~l--~~L~~L~Ls~n~i--~~~-----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~ 147 (477)
T 2id5_A 80 FNLRTLGLRSNR-LKLIPL-GVFTGL--SNLTKLDISENKI--VIL-----LDYMFQDLYNLKSLEVGD-NDLVYISHRA 147 (477)
T ss_dssp TTCCEEECCSSC-CCSCCT-TSSTTC--TTCCEEECTTSCC--CEE-----CTTTTTTCTTCCEEEECC-TTCCEECTTS
T ss_pred ccCCEEECCCCc-CCccCc-ccccCC--CCCCEEECCCCcc--ccC-----ChhHccccccCCEEECCC-CccceeChhh
Confidence 456666666654 332100 111222 5677777766652 110 111235566777777766 3343322222
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
+ ..+++|+.|+|++|. ++......+. .++ +|+.|+|++|..... ....+..+++|+.|++++|..+..... .+
T Consensus 148 ~-~~l~~L~~L~l~~n~-l~~~~~~~l~-~l~-~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 220 (477)
T 2id5_A 148 F-SGLNSLEQLTLEKCN-LTSIPTEALS-HLH-GLIVLRLRHLNINAI--RDYSFKRLYRLKVLEISHWPYLDTMTP-NC 220 (477)
T ss_dssp S-TTCTTCCEEEEESCC-CSSCCHHHHT-TCT-TCCEEEEESCCCCEE--CTTCSCSCTTCCEEEEECCTTCCEECT-TT
T ss_pred c-cCCCCCCEEECCCCc-CcccChhHhc-ccC-CCcEEeCCCCcCcEe--ChhhcccCcccceeeCCCCccccccCc-cc
Confidence 2 246677777777763 4443322222 333 477777777642211 112355677777777777654332111 11
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhhc
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
....+|++|+|++| .++......+ ..+++|+.|+|+++ .++...... ...+++|++|+|++|.++......
T Consensus 221 --~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 221 --LYGLNLTSLSITHC-NLTAVPYLAV-RHLVYLRFLNLSYN-PISTIEGSM-LHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp --TTTCCCSEEEEESS-CCCSCCHHHH-TTCTTCCEEECCSS-CCCEECTTS-CTTCTTCCEEECCSSCCSEECTTT
T ss_pred --ccCccccEEECcCC-cccccCHHHh-cCccccCeeECCCC-cCCccChhh-ccccccCCEEECCCCccceECHHH
Confidence 11247888888886 5654333333 47889999999986 466433222 345788999999999887654433
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.01 E-value=9.2e-11 Score=121.10 Aligned_cols=133 Identities=17% Similarity=0.083 Sum_probs=83.1
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhc
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYAC 524 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~ 524 (600)
+++|+.|+|++|. ++...-..+. .++ +|++|+|++|. ++..........+++|+.|+|+++. ++... .. ..
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~~~~-~l~-~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~--~~ 189 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDLDEG-CRS-RVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVK--GQ--VV 189 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCTG-GGS-SEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEE--CC--CC
T ss_pred cCCCCEEECCCCC-CCCccchhhh-ccC-CCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Ccccc--cc--cc
Confidence 4667777777763 4432221221 233 58888888885 3332222233567888999988886 44321 11 12
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 525 GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 525 ~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+++|++|+|++| .++..... ...+++|+.|+|++| .++. +......+++|+.|+|++|+++.
T Consensus 190 l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 190 FAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp CTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEEccCCCccC
Confidence 578999999886 56542211 346789999999986 5663 22334557899999999999883
No 55
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.01 E-value=3.2e-11 Score=121.58 Aligned_cols=209 Identities=20% Similarity=0.197 Sum_probs=133.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|+++. ++...... +.. +++|++|+|++|.. .. +. ...+..+++|+.|+|++ +.++.....
T Consensus 27 ~~~l~~L~ls~n~-l~~~~~~~-~~~--l~~L~~L~l~~n~l--~~-~~----~~~~~~l~~L~~L~L~~-n~l~~~~~~ 94 (276)
T 2z62_A 27 PFSTKNLDLSFNP-LRHLGSYS-FFS--FPELQVLDLSRCEI--QT-IE----DGAYQSLSHLSTLILTG-NPIQSLALG 94 (276)
T ss_dssp CTTCCEEECTTCC-CCEECTTT-TTT--CTTCSEEECTTCCC--CE-EC----TTTTTTCTTCCEEECTT-CCCCEECTT
T ss_pred CCCccEEECCCCc-ccccCHhH-hcc--ccCCcEEECCCCcC--Cc-cC----HHHccCCcCCCEEECCC-CccCccChh
Confidence 3568899999986 55422111 222 38999999999963 21 11 12346789999999998 445544333
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCCh---HH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD---EF 516 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd---~~ 516 (600)
.+ ..+++|+.|++++|. ++...-..+ ..++ +|++|+|++|. ++...+...+..+++|+.|+++++. ++. ..
T Consensus 95 ~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 168 (276)
T 2z62_A 95 AF-SGLSSLQKLVAVETN-LASLENFPI-GHLK-TLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD 168 (276)
T ss_dssp TT-TTCTTCCEEECTTSC-CCCSTTCCC-TTCT-TCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGG
T ss_pred hh-cCCccccEEECCCCC-ccccCchhc-ccCC-CCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHH
Confidence 23 358999999999984 433221112 2344 59999999985 3332234567889999999999986 543 23
Q ss_pred HHHHHHhcCCCcc-EEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 517 VRGFVYACGHNMK-ELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 517 l~~Ll~~~~~sLk-~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+..+. .++.|. +|+++++ .++..... .. ...+|+.|+|+++ .++... ..+...+++|++|+|++|+++..
T Consensus 169 ~~~l~--~L~~l~l~L~ls~n-~l~~~~~~-~~-~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 169 LRVLH--QMPLLNLSLDLSLN-PMNFIQPG-AF-KEIRLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GHHHH--TCTTCCEEEECCSS-CCCEECTT-SS-CSCCEEEEECCSS-CCSCCC-TTTTTTCCSCCEEECCSSCBCCC
T ss_pred hhhhh--hccccceeeecCCC-cccccCcc-cc-CCCcccEEECCCC-ceeecC-HhHhcccccccEEEccCCccccc
Confidence 33321 123333 8999985 55542211 11 3458999999996 466432 23345689999999999988754
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.01 E-value=5.6e-11 Score=125.85 Aligned_cols=63 Identities=21% Similarity=0.242 Sum_probs=32.9
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCCh
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISD 435 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD 435 (600)
+.+++|+|++|. ++.-. ..++.. +++|++|+|++|.. .. + ....+..+++|+.|++++ +.++.
T Consensus 117 ~~L~~L~L~~n~-l~~l~-~~~~~~--l~~L~~L~L~~n~l--~~-~----~~~~~~~l~~L~~L~l~~-n~l~~ 179 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLP-RGIFHN--TPKLTTLSMSNNNL--ER-I----EDDTFQATTSLQNLQLSS-NRLTH 179 (390)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTT--CTTCCEEECCSSCC--CB-C----CTTTTSSCTTCCEEECCS-SCCSB
T ss_pred CCCCEEECCCCc-cCcCC-HHHhcC--CCCCcEEECCCCcc--Cc-c----ChhhccCCCCCCEEECCC-CcCCc
Confidence 456777777764 33110 011222 36777777777752 11 0 011245677777777777 34444
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.00 E-value=2.7e-10 Score=117.83 Aligned_cols=205 Identities=15% Similarity=0.159 Sum_probs=136.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH-
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF- 438 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l- 438 (600)
.+.+++|+|+++. ++. +.... +++|++|++++|.. .. .....+..+++|+.|+++++ .++..++
T Consensus 99 l~~L~~L~Ls~n~-l~~-----l~~~~-~~~L~~L~l~~n~l--~~-----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 163 (330)
T 1xku_A 99 LVKLERLYLSKNQ-LKE-----LPEKM-PKTLQELRVHENEI--TK-----VRKSVFNGLNQMIVVELGTN-PLKSSGIE 163 (330)
T ss_dssp CTTCCEEECCSSC-CSB-----CCSSC-CTTCCEEECCSSCC--CB-----BCHHHHTTCTTCCEEECCSS-CCCGGGBC
T ss_pred CCCCCEEECCCCc-CCc-----cChhh-cccccEEECCCCcc--cc-----cCHhHhcCCccccEEECCCC-cCCccCcC
Confidence 4678999999986 442 22222 27999999999873 21 11234578999999999984 4543221
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
......+++|+.|++++|. ++.. ....+++|++|+|++|. ++.. ....+..+++|+.|+|+++. ++.....
T Consensus 164 ~~~~~~l~~L~~L~l~~n~-l~~l-----~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~ 234 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTN-ITTI-----PQGLPPSLTELHLDGNK-ITKV-DAASLKGLNNLAKLGLSFNS-ISAVDNG 234 (330)
T ss_dssp TTGGGGCTTCCEEECCSSC-CCSC-----CSSCCTTCSEEECTTSC-CCEE-CTGGGTTCTTCCEEECCSSC-CCEECTT
T ss_pred hhhccCCCCcCEEECCCCc-cccC-----CccccccCCEEECCCCc-CCcc-CHHHhcCCCCCCEEECCCCc-CceeChh
Confidence 2233468999999999984 4432 12222469999999995 4322 12457789999999999986 5542211
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHh-----cCCCccEEEeeCCCCChh
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN-----GCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~-----~c~~Lk~L~Ls~c~isD~ 593 (600)
. + ..+++|++|+|++| .++. +..-...+++|+.|+|++| .++..+...+.. ..+.|+.|++++|++...
T Consensus 235 ~-~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 235 S-L-ANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp T-G-GGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred h-c-cCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc
Confidence 1 2 23489999999997 5552 2222347899999999986 566544333321 246799999999998753
Q ss_pred h
Q 007516 594 F 594 (600)
Q Consensus 594 ~ 594 (600)
.
T Consensus 309 ~ 309 (330)
T 1xku_A 309 E 309 (330)
T ss_dssp G
T ss_pred c
Confidence 3
No 58
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.00 E-value=2e-11 Score=141.21 Aligned_cols=107 Identities=20% Similarity=0.240 Sum_probs=52.5
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L 554 (600)
|++|+|++|. ++. .+...+..+++|++|++++|. ++... . ...+++|++|+|++|. ++......+...|++|
T Consensus 225 L~~L~Ls~n~-l~~-~~~~~l~~l~~L~~L~Ls~n~-l~~~~-~---~~~l~~L~~L~L~~n~-l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 225 LQHLDISGNK-LSG-DFSRAISTCTELKLLNISSNQ-FVGPI-P---PLPLKSLQYLSLAENK-FTGEIPDFLSGACDTL 296 (768)
T ss_dssp CCEEECCSSC-CCS-CHHHHTTTCSSCCEEECCSSC-CEESC-C---CCCCTTCCEEECCSSE-EEESCCCCSCTTCTTC
T ss_pred CCEEECcCCc-CCC-cccHHHhcCCCCCEEECCCCc-ccCcc-C---ccccCCCCEEECcCCc-cCCccCHHHHhhcCcC
Confidence 5666665553 221 133445556666666665554 22100 0 0123556666666542 2211111222335777
Q ss_pred cEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 555 CTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 555 ~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
+.|+|++|. ++... ......+++|++|+|++|.++
T Consensus 297 ~~L~Ls~n~-l~~~~-p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 297 TGLDLSGNH-FYGAV-PPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp SEEECCSSE-EEECC-CGGGGGCTTCCEEECCSSEEE
T ss_pred CEEECcCCc-CCCcc-chHHhcCCCccEEECCCCccc
Confidence 777777752 33221 122334777888888887665
No 59
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=6.7e-11 Score=132.89 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=20.9
Q ss_pred cCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 550 TCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 550 ~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
.+++|+.|+|++|. ++... ...+++|++|+|++|+++...
T Consensus 322 ~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 322 QFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp HHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred cCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 34555555555543 33221 233556666666666665544
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=8.6e-11 Score=129.11 Aligned_cols=155 Identities=19% Similarity=0.122 Sum_probs=93.3
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
++|+.|+|++| .++.... ..+++|+.|+|++|. ++...-..+. .++ +|+.|+|++|. ++..........++
T Consensus 99 ~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~-~L~~L~Ls~N~-l~~~~~~~l~~~l~ 169 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSC----SRGQGKKNIYLANNK-ITMLRDLDEG-CRS-RVQYLDLKLNE-IDTVNFAELAASSD 169 (487)
T ss_dssp TTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSSC-CCSGGGBCGG-GGS-SEEEEECTTSC-CCEEEGGGGGGGTT
T ss_pred CCcCEEECcCC-cCCCCCc----cccCCCCEEECCCCC-CCCCCchhhc-CCC-CCCEEECCCCC-CCCcChHHHhhhCC
Confidence 56666666653 3333221 235677888887774 4443222222 334 58888888885 33221122234688
Q ss_pred CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCC
Q 007516 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQA 579 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~ 579 (600)
+|+.|+|++|. ++... .+ ..+++|+.|+|++| .++..... ...+++|+.|+|++| .++. +......+++
T Consensus 170 ~L~~L~Ls~N~-l~~~~--~~--~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~ 238 (487)
T 3oja_A 170 TLEHLNLQYNF-IYDVK--GQ--VVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALRFSQN 238 (487)
T ss_dssp TCCEEECTTSC-CCEEE--CC--CCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCCCCTT
T ss_pred cccEEecCCCc-ccccc--cc--ccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcc--cchhhccCCC
Confidence 88888888886 54321 11 12578899999886 56542211 346788999999985 5653 3333445788
Q ss_pred ccEEEeeCCCCChhh
Q 007516 580 IQTLKLCRNAFRFVF 594 (600)
Q Consensus 580 Lk~L~Ls~c~isD~~ 594 (600)
|+.|++++|+++...
T Consensus 239 L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 239 LEHFDLRGNGFHCGT 253 (487)
T ss_dssp CCEEECTTCCBCHHH
T ss_pred CCEEEcCCCCCcCcc
Confidence 999999999888433
No 61
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=6.2e-09 Score=99.51 Aligned_cols=131 Identities=17% Similarity=0.100 Sum_probs=62.9
Q ss_pred HHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhc---CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCch
Q 007516 411 TLASSLNSLPSLTTLSICGACRISDVGFKALVTS---APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLN 487 (600)
Q Consensus 411 ~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~---~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~ 487 (600)
.+...+..++.|++|+|++|..+++.++..++.. +++|++|+|++| .+++.+...++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~------------------- 86 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALA------------------- 86 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHH-------------------
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHH-------------------
Confidence 3444444555555555555334555554444331 334444444444 24444433332
Q ss_pred hhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHh--cCCCccEEEe--cCCCCCChHHHHHHHh---cCCCccEEeec
Q 007516 488 AMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CGHNMKELIL--TDCVKLTDFSLKVIAE---TCPRLCTLDLS 560 (600)
Q Consensus 488 d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~--~~~sLk~L~L--s~C~~LtD~~L~~L~~---~cp~L~~LdLs 560 (600)
..+...++|++|+|++|. +++.++..+... ..++|++|+| ++ ..+++.+...++. .++.|++|+|+
T Consensus 87 -----~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 87 -----EMLKVNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp -----HHHHHCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred -----HHHHhCCCcCEEECcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 223344556666666665 666655544322 2245666666 33 3566655444432 34556666665
Q ss_pred CCCCCChHH
Q 007516 561 NLYKLTDFG 569 (600)
Q Consensus 561 ~C~~lTd~~ 569 (600)
+| .+++.+
T Consensus 160 ~n-~i~~~~ 167 (185)
T 1io0_A 160 FT-QQGPRL 167 (185)
T ss_dssp CS-SHHHHH
T ss_pred CC-CCChHH
Confidence 53 344443
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.98 E-value=8.4e-10 Score=120.29 Aligned_cols=188 Identities=18% Similarity=0.189 Sum_probs=112.2
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|++++|. ++.-. +. .+++|++|+|++|.. .. + .+..+++|+.|++++| .++...
T Consensus 63 l~~L~~L~Ls~n~-l~~~~----~~--~l~~L~~L~Ls~N~l--~~------~--~~~~l~~L~~L~L~~N-~l~~l~-- 122 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTLD----LS--QNTNLTYLACDSNKL--TN------L--DVTPLTKLTYLNCDTN-KLTKLD-- 122 (457)
T ss_dssp CTTCSEEECCSSC-CSCCC----CT--TCTTCSEEECCSSCC--SC------C--CCTTCTTCCEEECCSS-CCSCCC--
T ss_pred cCCCCEEEccCCc-CCeEc----cc--cCCCCCEEECcCCCC--ce------e--ecCCCCcCCEEECCCC-cCCeec--
Confidence 3556666666664 43311 11 236677777766652 11 0 1345667777777763 444432
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
...+++|+.|++++|. ++...+ ..++ +|+.|++++|..++.. .+..+++|+.|+++++. ++.-.
T Consensus 123 --~~~l~~L~~L~l~~N~-l~~l~l----~~l~-~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~l~--- 186 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNT-LTEIDV----SHNT-QLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNK-ITELD--- 186 (457)
T ss_dssp --CTTCTTCCEEECTTSC-CSCCCC----TTCT-TCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSC-CCCCC---
T ss_pred --CCCCCcCCEEECCCCc-cceecc----ccCC-cCCEEECCCCCccccc----ccccCCcCCEEECCCCc-cceec---
Confidence 2346677777777763 443221 1333 4777777777555442 25567788888887775 44421
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
+ ..+++|+.|++++| .++... ...+++|+.|+|++| .++.. . ...+++|++|++++|.++...+
T Consensus 187 -l-~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N-~l~~i--p--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 187 -V-SQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSN-KLTEI--D--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp -C-TTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCC--C--CTTCTTCSEEECCSSCCSCCCC
T ss_pred -c-ccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCC-ccccc--C--ccccCCCCEEEeeCCcCCCcCH
Confidence 1 23478888888875 455431 336788889999885 56652 2 4468889999999998876443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.97 E-value=1.2e-10 Score=120.26 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=35.3
Q ss_pred hcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHh
Q 007516 496 RKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN 575 (600)
Q Consensus 496 ~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~ 575 (600)
..+++|+.|+++++. ++......+. ..+++|++|+|++| .++.. .... .+++|+.|+|++| .++..... ..
T Consensus 141 ~~l~~L~~L~Ls~N~-l~~~~~~~~~-~~l~~L~~L~L~~N-~l~~~--~~~~-~l~~L~~L~Ls~N-~l~~l~~~--~~ 211 (317)
T 3o53_A 141 GCRSRVQYLDLKLNE-IDTVNFAELA-ASSDTLEHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSN-KLAFMGPE--FQ 211 (317)
T ss_dssp GGGSSEEEEECTTSC-CCEEEGGGGG-GGTTTCCEEECTTS-CCCEE--ECCC-CCTTCCEEECCSS-CCCEECGG--GG
T ss_pred hccCCCCEEECCCCC-CCcccHHHHh-hccCcCCEEECCCC-cCccc--cccc-ccccCCEEECCCC-cCCcchhh--hc
Confidence 344555555555543 3322111111 11245555555554 23321 0011 2455555555553 33321111 22
Q ss_pred cCCCccEEEeeCCCCC
Q 007516 576 GCQAIQTLKLCRNAFR 591 (600)
Q Consensus 576 ~c~~Lk~L~Ls~c~is 591 (600)
.+++|++|+|++|.++
T Consensus 212 ~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 212 SAAGVTWISLRNNKLV 227 (317)
T ss_dssp GGTTCSEEECTTSCCC
T ss_pred ccCcccEEECcCCccc
Confidence 3455555555555544
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.97 E-value=6.9e-10 Score=120.98 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=129.8
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
..+.+++|++++|. ++... +.. +++|++|+|++|.. .. + .+..+++|+.|++++ +.++...
T Consensus 83 ~l~~L~~L~Ls~N~-l~~~~----~~~--l~~L~~L~L~~N~l--~~------l--~~~~l~~L~~L~l~~-N~l~~l~- 143 (457)
T 3bz5_A 83 QNTNLTYLACDSNK-LTNLD----VTP--LTKLTYLNCDTNKL--TK------L--DVSQNPLLTYLNCAR-NTLTEID- 143 (457)
T ss_dssp TCTTCSEEECCSSC-CSCCC----CTT--CTTCCEEECCSSCC--SC------C--CCTTCTTCCEEECTT-SCCSCCC-
T ss_pred cCCCCCEEECcCCC-Cceee----cCC--CCcCCEEECCCCcC--Ce------e--cCCCCCcCCEEECCC-Cccceec-
Confidence 44678999999986 55421 223 48999999999863 21 1 156789999999998 4565532
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
...+++|+.|++++|..++...+. .++ +|+.|++++|. ++... +..+++|+.|+++++. ++...
T Consensus 144 ---l~~l~~L~~L~l~~n~~~~~~~~~----~l~-~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~~-- 207 (457)
T 3bz5_A 144 ---VSHNTQLTELDCHLNKKITKLDVT----PQT-QLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKLD-- 207 (457)
T ss_dssp ---CTTCTTCCEEECTTCSCCCCCCCT----TCT-TCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCCC--
T ss_pred ---cccCCcCCEEECCCCCcccccccc----cCC-cCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCeec--
Confidence 345889999999999766665432 334 59999999985 44321 6788999999999887 55432
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+ ..+++|+.|+|++| .++.. . ...+++|+.|+++++ .++... ...+++|+.|+++++.+..
T Consensus 208 --l-~~l~~L~~L~Ls~N-~l~~i--p--~~~l~~L~~L~l~~N-~l~~~~----~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 208 --L-NQNIQLTFLDCSSN-KLTEI--D--VTPLTQLTYFDCSVN-PLTELD----VSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp --C-TTCTTCSEEECCSS-CCSCC--C--CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECTTCCCSC
T ss_pred --c-ccCCCCCEEECcCC-ccccc--C--ccccCCCCEEEeeCC-cCCCcC----HHHCCCCCEEeccCCCCCE
Confidence 1 23489999999996 56652 2 347899999999986 566532 3346777776666665543
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.96 E-value=3.3e-11 Score=134.70 Aligned_cols=210 Identities=19% Similarity=0.084 Sum_probs=139.1
Q ss_pred hCCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhH
Q 007516 359 FSGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGF 438 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l 438 (600)
..+.++.|++++|..+... ....+++|+.|+|++|.. ... ..+......+++|+.|+|++|. ++...
T Consensus 326 ~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~l--~~~---~~~~~~~~~~~~L~~L~L~~n~-l~~~~- 392 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNAL--SFS---GCCSYSDLGTNSLRHLDLSFNG-AIIMS- 392 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSCE--EEE---EECCHHHHCCSCCCEEECCSCS-EEEEC-
T ss_pred CCCccceeeccCCcCccch------hhccCCCCCEEECcCCcc--CCC---cchhhhhccCCcccEeECCCCc-cccch-
Confidence 4567889999999655432 112348999999999962 110 0012234678999999999864 43322
Q ss_pred HHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHH
Q 007516 439 KALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 439 ~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~ 518 (600)
..+..+++|+.|+|++|. ++..........++ +|+.|+|++|..... +...+..+++|+.|++++|. +++..+.
T Consensus 393 -~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 466 (606)
T 3vq2_A 393 -ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLE-KLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNS-FKDNTLS 466 (606)
T ss_dssp -CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCT-TCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCE-EGGGEEC
T ss_pred -hhccCCCCCCeeECCCCc-cCCccChhhhhccc-cCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCc-CCCcchH
Confidence 223458999999999984 33321111122445 599999999964332 23457789999999999986 5442222
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+ ..+++|+.|+|++| .++......+ ..+++|+.|+|++| .++...... ...+++|++|+|++|.++.
T Consensus 467 ~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 467 NVF-ANTTNLTFLDLSKC-QLEQISWGVF-DTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp SCC-TTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEEECTTSCCCC
T ss_pred Hhh-ccCCCCCEEECCCC-cCCccChhhh-cccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEEECCCCcCcc
Confidence 222 23489999999997 5665332223 47899999999997 566543223 3458899999999999873
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.96 E-value=1.2e-09 Score=120.22 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=51.1
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|++|. ++......+ ..+ ++|++|+|++|.. ... .+...+..+++|+.|++++|..++.....
T Consensus 73 l~~L~~L~Ls~n~-l~~~~~~~~-~~l--~~L~~L~Ls~n~l--~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 73 LGSLEHLDLSDNH-LSSLSSSWF-GPL--SSLKYLNLMGNPY--QTL----GVTSLFPNLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp CTTCCEEECTTSC-CCSCCHHHH-TTC--TTCCEEECTTCCC--SSS----CSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred cccCCEEECCCCc-cCccCHHHh-ccC--CCCcEEECCCCcc--ccc----chhhhhhccCCccEEECCCCccccccCHh
Confidence 3567888888875 443222222 233 7888888888763 110 01123466788888888876544433222
Q ss_pred HHHhcCCCCcEEecCCCC
Q 007516 440 ALVTSAPALRSINLSQCS 457 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~ 457 (600)
.+ ..+++|++|+|++|.
T Consensus 143 ~~-~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 143 DF-AGLTSLNELEIKALS 159 (549)
T ss_dssp TT-TTCCEEEEEEEEETT
T ss_pred hh-hcccccCeeeccCCc
Confidence 22 347888888888774
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.96 E-value=1.3e-10 Score=127.42 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=92.8
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCch-hHHHHHhhccccceEEEccCccCchhhhHHHHH
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSST-SVDILADKLGSFIQELYINDCQSLNAMLILPAL 495 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~-~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l 495 (600)
..+++|+.|+|++| .+++.....+ ..+++|+.|+|++|. ++.. .+......++ +|++|+|++|....... ...+
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~-~~~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMK-SLQQLDISQNSVSYDEK-KGDC 395 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGG-GCSC
T ss_pred hhCCcccEEEeECC-ccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCC-CCCEEECCCCcCCcccc-cchh
Confidence 45677777777773 4544322222 346777777777774 4432 2222223444 47777777775322110 1124
Q ss_pred hcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHh
Q 007516 496 RKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN 575 (600)
Q Consensus 496 ~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~ 575 (600)
..+++|+.|++++|. ++..... ...++|+.|+|++| .++. +..-...+++|+.|+|++| .++..... ...
T Consensus 396 ~~l~~L~~L~Ls~N~-l~~~~~~----~l~~~L~~L~Ls~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~ 465 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNI-LTDTIFR----CLPPRIKVLDLHSN-KIKS--IPKQVVKLEALQELNVASN-QLKSVPDG-IFD 465 (520)
T ss_dssp CCCTTCCEEECCSSC-CCGGGGG----SCCTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCCCTT-TTT
T ss_pred ccCccCCEEECcCCC-CCcchhh----hhcccCCEEECCCC-cccc--cchhhhcCCCCCEEECCCC-cCCccCHH-Hhc
Confidence 566777777777776 5432211 11257888888876 4552 2222226788888888886 46532211 234
Q ss_pred cCCCccEEEeeCCCCChh
Q 007516 576 GCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 576 ~c~~Lk~L~Ls~c~isD~ 593 (600)
.+++|++|++++|+++..
T Consensus 466 ~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp TCTTCCEEECCSSCBCCC
T ss_pred cCCcccEEECcCCCCccc
Confidence 578888888888887754
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.95 E-value=4.6e-10 Score=113.30 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=122.7
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|.+++|.. .+. . .+..+++|+.|+|++| .+++.. . ...+++|+.|+|++|. ++......+
T Consensus 41 ~~L~~L~l~~~~i--~~~------~-~l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~L~~n~-l~~~~~~~~- 105 (272)
T 3rfs_A 41 NSIDQIIANNSDI--KSV------Q-GIQYLPNVRYLALGGN-KLHDIS--A-LKELTNLTYLILTGNQ-LQSLPNGVF- 105 (272)
T ss_dssp TTCCEEECTTSCC--CCC------T-TGGGCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECTTSC-CCCCCTTTT-
T ss_pred cceeeeeeCCCCc--ccc------c-ccccCCCCcEEECCCC-CCCCch--h-hcCCCCCCEEECCCCc-cCccChhHh-
Confidence 7999999999873 211 1 2467999999999995 455532 2 3468999999999984 554322222
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
..++ +|++|+|++|. ++.. ....+..+++|+.|++++|. ++.... ..+ ..+++|+.|+|++| .+++... ...
T Consensus 106 ~~l~-~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~ 177 (272)
T 3rfs_A 106 DKLT-NLKELVLVENQ-LQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPK-GVF-DKLTNLTELDLSYN-QLQSLPE-GVF 177 (272)
T ss_dssp TTCT-TCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCCCCCT-TTT
T ss_pred cCCc-CCCEEECCCCc-CCcc-CHHHhccCCCCCEEECCCCc-cCccCH-HHh-ccCccCCEEECCCC-CcCccCH-HHh
Confidence 2444 59999999996 3321 12346789999999999986 553211 111 23589999999997 5664222 223
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+++|+.|+|++| .++... ......+++|++|+|++|+++.
T Consensus 178 ~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 178 DKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCccCCEEECCCC-cCCccC-HHHHhCCcCCCEEEccCCCccc
Confidence 47899999999996 466432 2333568999999999998764
No 69
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.95 E-value=1.4e-11 Score=127.20 Aligned_cols=208 Identities=14% Similarity=0.117 Sum_probs=119.8
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|+++..++...... +..+ ++|++|+|++|.. .. .++..+..+++|++|+|+++ .++.....
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~-l~~l--~~L~~L~Ls~n~l--~~-----~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~ 143 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPA-IAKL--TQLHYLYITHTNV--SG-----AIPDFLSQIKTLVTLDFSYN-ALSGTLPP 143 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGG-GGGC--TTCSEEEEEEECC--EE-----ECCGGGGGCTTCCEEECCSS-EEESCCCG
T ss_pred CCCCCeeeCCCCCcccccCChh-HhcC--CCCCEEECcCCee--CC-----cCCHHHhCCCCCCEEeCCCC-ccCCcCCh
Confidence 3567888888533333211111 2233 7888888888863 11 11223467888888888884 34322112
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
. +..+++|++|+|++|. ++......+. .++++|+.|+|++|..... +...+..++ |+.|+++++. ++.... .
T Consensus 144 ~-~~~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~--~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~ 215 (313)
T 1ogq_A 144 S-ISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLTGK--IPPTFANLN-LAFVDLSRNM-LEGDAS-V 215 (313)
T ss_dssp G-GGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEEEE--CCGGGGGCC-CSEEECCSSE-EEECCG-G
T ss_pred H-HhcCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCeeecc--CChHHhCCc-ccEEECcCCc-ccCcCC-H
Confidence 2 2347888889888874 4422222232 2333588888888853211 223455565 8888888875 332111 1
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.+ ..+++|+.|+|++| .++.. +.. ...+++|++|+|++| .++...... ...+++|++|+|++|.++.
T Consensus 216 ~~-~~l~~L~~L~L~~N-~l~~~-~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 216 LF-GSDKNTQKIHLAKN-SLAFD-LGK-VGLSKNLNGLDLRNN-RIYGTLPQG-LTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp GC-CTTSCCSEEECCSS-EECCB-GGG-CCCCTTCCEEECCSS-CCEECCCGG-GGGCTTCCEEECCSSEEEE
T ss_pred HH-hcCCCCCEEECCCC-ceeee-cCc-ccccCCCCEEECcCC-cccCcCChH-HhcCcCCCEEECcCCcccc
Confidence 11 23478888888886 34321 111 235788888888885 455332222 3457888888888887764
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.95 E-value=3.4e-10 Score=119.81 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|+|++|. +++..... +.. +++|++|+|++|.. ... ....+..+++|+.|+|++| .++....
T Consensus 68 l~~L~~L~L~~n~-i~~~~~~~-~~~--l~~L~~L~L~~n~l--~~~-----~~~~~~~l~~L~~L~L~~n-~l~~l~~- 134 (390)
T 3o6n_A 68 FRQVELLNLNDLQ-IEEIDTYA-FAY--AHTIQKLYMGFNAI--RYL-----PPHVFQNVPLLTVLVLERN-DLSSLPR- 134 (390)
T ss_dssp CCCCSEEECTTSC-CCEECTTT-TTT--CTTCCEEECCSSCC--CCC-----CTTTTTTCTTCCEEECCSS-CCCCCCT-
T ss_pred cccCcEEECCCCc-ccccChhh-ccC--CCCcCEEECCCCCC--CcC-----CHHHhcCCCCCCEEECCCC-ccCcCCH-
Confidence 3678888888875 44321111 122 37888888888863 110 1123467888888888884 4553221
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ 484 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~ 484 (600)
.++..+++|++|+|++|. ++......+. .++ +|++|+|++|.
T Consensus 135 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~-~L~~L~l~~n~ 176 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNN-LERIEDDTFQ-ATT-SLQNLQLSSNR 176 (390)
T ss_dssp TTTTTCTTCCEEECCSSC-CCBCCTTTTS-SCT-TCCEEECCSSC
T ss_pred HHhcCCCCCcEEECCCCc-cCccChhhcc-CCC-CCCEEECCCCc
Confidence 223457888888888874 4433222222 334 58889888885
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=2.1e-10 Score=128.91 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=77.3
Q ss_pred ccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCC
Q 007516 473 SFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCP 552 (600)
Q Consensus 473 s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp 552 (600)
.+|+.|+|++|. ++.. ..+..+++|+.|+|+++. ++......+ ..+++|+.|+|++| .++. +......++
T Consensus 232 ~~L~~L~L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~ 301 (597)
T 3oja_B 232 VELTILKLQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYHPF--VKMQRLERLYISNN-RLVA--LNLYGQPIP 301 (597)
T ss_dssp SCCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESGGG--TTCSSCCEEECTTS-CCCE--EECSSSCCT
T ss_pred CCCCEEECCCCC-CCCC---hhhccCCCCCEEECCCCc-cCCCCHHHh--cCccCCCEEECCCC-CCCC--CCcccccCC
Confidence 469999999985 4332 457889999999999987 554322111 23589999999996 5654 222234689
Q ss_pred CccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 553 RLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 553 ~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
+|+.|+|++| .++. +..-...+++|++|+|++|.++...+
T Consensus 302 ~L~~L~Ls~N-~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 302 TLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp TCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CCcEEECCCC-CCCc--cCcccccCCCCCEEECCCCCCCCcCh
Confidence 9999999997 4553 22222457899999999999886543
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.93 E-value=9.5e-11 Score=129.19 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=23.6
Q ss_pred cCCCccEEeecCCCCCChHHHHHHHh---cCCCccEEEeeCCCCC
Q 007516 550 TCPRLCTLDLSNLYKLTDFGIGYLAN---GCQAIQTLKLCRNAFR 591 (600)
Q Consensus 550 ~cp~L~~LdLs~C~~lTd~~l~~L~~---~c~~Lk~L~Ls~c~is 591 (600)
.+++|+.|+++++ .+++..+..+.. .+++|+.|++++|.+.
T Consensus 221 ~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 221 VSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp CCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred hhhcccceecccc-ccchhHHHHHHHHhhhhcccccccccccccc
Confidence 3455666666653 455555544432 3566777777777544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.92 E-value=2.2e-10 Score=125.79 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=93.6
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKAL 441 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L 441 (600)
+++.|+|++|. ++..... .+.. +++|++|+|++|.. .... .+..+++|+.|+|++| .+++..
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~-~~~~--l~~L~~L~Ls~N~l--~~~~-------~l~~l~~L~~L~Ls~N-~l~~l~---- 96 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAA-DLAP--FTKLELLNLSSNVL--YETL-------DLESLSTLRTLDLNNN-YVQELL---- 96 (487)
T ss_dssp GCCEEECCSSC-CCCCCGG-GGTT--CTTCCEEECTTSCC--EEEE-------ECTTCTTCCEEECCSS-EEEEEE----
T ss_pred CccEEEeeCCc-CCCCCHH-HHhC--CCCCCEEEeeCCCC--CCCc-------ccccCCCCCEEEecCC-cCCCCC----
Confidence 45666666664 3321111 1122 25666666666652 1100 0345666666666663 343221
Q ss_pred HhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHH
Q 007516 442 VTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFV 521 (600)
Q Consensus 442 ~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll 521 (600)
..++|+.|+|++|. ++..... .++ +|+.|+|++|. ++.. ....+..+++|+.|+|+++. ++......+.
T Consensus 97 --~~~~L~~L~L~~N~-l~~~~~~----~l~-~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~ 165 (487)
T 3oja_A 97 --VGPSIETLHAANNN-ISRVSCS----RGQ-GKKNIYLANNK-ITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELA 165 (487)
T ss_dssp --ECTTCCEEECCSSC-CCCEEEC----CCS-SCEEEECCSSC-CCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGG
T ss_pred --CCCCcCEEECcCCc-CCCCCcc----ccC-CCCEEECCCCC-CCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHh
Confidence 23666666666663 3332221 122 46666666664 2211 11234456666666666664 4432221221
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 522 YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 522 ~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+++|+.|+|++| .++.. ..+. .+++|+.|+|++| .++.... . ...+++|+.|+|++|.++.
T Consensus 166 -~~l~~L~~L~Ls~N-~l~~~--~~~~-~l~~L~~L~Ls~N-~l~~~~~-~-~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 166 -ASSDTLEHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSN-KLAFMGP-E-FQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp -GGTTTCCEEECTTS-CCCEE--ECCC-CCTTCCEEECCSS-CCCEECG-G-GGGGTTCSEEECTTSCCCE
T ss_pred -hhCCcccEEecCCC-ccccc--cccc-cCCCCCEEECCCC-CCCCCCH-h-HcCCCCccEEEecCCcCcc
Confidence 12366666666665 34432 1111 3566666666664 4543211 1 2345666666666666653
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.91 E-value=2.3e-10 Score=115.19 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=6.0
Q ss_pred CCCCCCEEEcCC
Q 007516 418 SLPSLTTLSICG 429 (600)
Q Consensus 418 ~l~~L~~L~Ls~ 429 (600)
.+++|+.|+|++
T Consensus 83 ~l~~L~~L~l~~ 94 (270)
T 2o6q_A 83 ELKNLETLWVTD 94 (270)
T ss_dssp SCTTCCEEECCS
T ss_pred CCCCCCEEECCC
Confidence 344555555554
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.90 E-value=8.6e-11 Score=121.75 Aligned_cols=205 Identities=17% Similarity=0.182 Sum_probs=95.4
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|+|++|. ++..... .+.. +++|++|+|++|.. .. ++. ...++|++|++++ +.++.....
T Consensus 78 ~~L~~L~L~~n~-l~~~~~~-~~~~--l~~L~~L~L~~n~l--~~------l~~--~~~~~L~~L~l~~-n~i~~~~~~- 141 (332)
T 2ft3_A 78 QHLYALVLVNNK-ISKIHEK-AFSP--LRKLQKLYISKNHL--VE------IPP--NLPSSLVELRIHD-NRIRKVPKG- 141 (332)
T ss_dssp TTCCEEECCSSC-CCEECGG-GSTT--CTTCCEEECCSSCC--CS------CCS--SCCTTCCEEECCS-SCCCCCCSG-
T ss_pred CCCcEEECCCCc-cCccCHh-HhhC--cCCCCEEECCCCcC--Cc------cCc--cccccCCEEECCC-CccCccCHh-
Confidence 456677777664 3321111 1122 26777777776652 10 000 1125677777776 334432211
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHH--HH------------------HhhccccceEEEccCccCchhhhHHHHHhcCCC
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVD--IL------------------ADKLGSFIQELYINDCQSLNAMLILPALRKLKH 500 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~--~L------------------~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~ 500 (600)
.+..+++|+.|++++|. ++..++. .+ ....+.+|++|+|++|. ++.. ....+..+++
T Consensus 142 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~-~~~~l~~l~~ 218 (332)
T 2ft3_A 142 VFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAI-ELEDLLRYSK 218 (332)
T ss_dssp GGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCC-CTTSSTTCTT
T ss_pred HhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCcc-CHHHhcCCCC
Confidence 12346778888887764 3221110 00 00111235555555442 2111 1123455666
Q ss_pred CCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhc----
Q 007516 501 LEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANG---- 576 (600)
Q Consensus 501 Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~---- 576 (600)
|+.|+|+++. ++...... + ..+++|++|+|++| .++. +..-...+++|+.|+|+++ .++..+...+...
T Consensus 219 L~~L~L~~N~-l~~~~~~~-~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~ 291 (332)
T 2ft3_A 219 LYRLGLGHNQ-IRMIENGS-L-SFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGV 291 (332)
T ss_dssp CSCCBCCSSC-CCCCCTTG-G-GGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCS
T ss_pred CCEEECCCCc-CCcCChhH-h-hCCCCCCEEECCCC-cCee--cChhhhcCccCCEEECCCC-CCCccChhHcccccccc
Confidence 6666666654 33211101 1 12366777777665 3442 1111235667777777764 4554433322221
Q ss_pred -CCCccEEEeeCCCCC
Q 007516 577 -CQAIQTLKLCRNAFR 591 (600)
Q Consensus 577 -c~~Lk~L~Ls~c~is 591 (600)
.+.|+.|++++|+++
T Consensus 292 ~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 292 KRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCCBSEEECCSSSSC
T ss_pred ccccccceEeecCccc
Confidence 345677777777665
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.90 E-value=9.1e-11 Score=129.66 Aligned_cols=206 Identities=19% Similarity=0.193 Sum_probs=134.8
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhh-HHH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVG-FKA 440 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~-l~~ 440 (600)
.+++|++.+|. ++. +.. ..+++|+.|++.+|... ... ....+++|+.|+|++| .++..+ ...
T Consensus 305 ~L~~L~l~~n~-~~~-----l~~-~~l~~L~~L~l~~n~~~--~~~-------~~~~~~~L~~L~l~~n-~l~~~~~~~~ 367 (570)
T 2z63_A 305 GWQHLELVNCK-FGQ-----FPT-LKLKSLKRLTFTSNKGG--NAF-------SEVDLPSLEFLDLSRN-GLSFKGCCSQ 367 (570)
T ss_dssp CCSEEEEESCB-CSS-----CCB-CBCSSCCEEEEESCBSC--CBC-------CCCBCTTCCEEECCSS-CCBEEEEEEH
T ss_pred CccEEeeccCc-ccc-----cCc-ccccccCEEeCcCCccc--ccc-------ccccCCCCCEEeCcCC-ccCccccccc
Confidence 67889999886 331 111 12489999999988631 111 1167899999999984 454332 112
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
....+++|+.|+|++|. ++..... ...++ +|++|++++|.. ........+..+++|+.|++++|. ++.... ..
T Consensus 368 ~~~~~~~L~~L~l~~n~-l~~~~~~--~~~l~-~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~ 440 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG-VITMSSN--FLGLE-QLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH-TRVAFN-GI 440 (570)
T ss_dssp HHHTCSCCCEEECCSCS-EEEEEEE--EETCT-TCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSC-CEECCT-TT
T ss_pred cccccCccCEEECCCCc-ccccccc--ccccC-CCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCc-ccccch-hh
Confidence 23458999999999985 3332211 22445 599999999853 221111346789999999999986 433211 11
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
+ ..+++|+.|+|++|. +++..+......+++|+.|+|++| .++......+ ..+++|++|+|++|.+++...
T Consensus 441 ~-~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 441 F-NGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp T-TTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCSCCCT
T ss_pred h-hcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhh-hcccCCCEEeCCCCcCCCCCH
Confidence 2 234899999999973 543223333457899999999997 5665433333 358999999999999886543
No 77
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.90 E-value=3e-11 Score=124.76 Aligned_cols=211 Identities=13% Similarity=0.107 Sum_probs=132.5
Q ss_pred CCCcEEEecCCCCCCHH-HHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 361 GSPTEIRLRDCSWLTEQ-EFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~-~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
..+++|+|+++. ++.. .+...+.. +++|++|+|+++.. +.. .++..+..+++|+.|+|+++ .++.....
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~--l~~L~~L~L~~~n~-l~~-----~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~ 119 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLAN--LPYLNFLYIGGINN-LVG-----PIPPAIAKLTQLHYLYITHT-NVSGAIPD 119 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGG--CTTCSEEEEEEETT-EES-----CCCGGGGGCTTCSEEEEEEE-CCEEECCG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhC--CCCCCeeeCCCCCc-ccc-----cCChhHhcCCCCCEEECcCC-eeCCcCCH
Confidence 456789999986 4420 11122233 38999999996332 111 12233567999999999984 45422222
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC-CCCEEEccCCCCCChHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK-HLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~-~Le~L~Ls~c~~ltd~~l~ 518 (600)
. +..+++|++|+|++|. ++......+. .++ +|++|+|++|..... +...+..++ +|+.|+++++. ++....
T Consensus 120 ~-~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~-~L~~L~L~~N~l~~~--~p~~l~~l~~~L~~L~L~~N~-l~~~~~- 191 (313)
T 1ogq_A 120 F-LSQIKTLVTLDFSYNA-LSGTLPPSIS-SLP-NLVGITFDGNRISGA--IPDSYGSFSKLFTSMTISRNR-LTGKIP- 191 (313)
T ss_dssp G-GGGCTTCCEEECCSSE-EESCCCGGGG-GCT-TCCEEECCSSCCEEE--CCGGGGCCCTTCCEEECCSSE-EEEECC-
T ss_pred H-HhCCCCCCEEeCCCCc-cCCcCChHHh-cCC-CCCeEECcCCcccCc--CCHHHhhhhhcCcEEECcCCe-eeccCC-
Confidence 2 3458999999999984 3322112222 344 599999999963212 234567787 99999999986 432111
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhh
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHR 596 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~ 596 (600)
..+... +|+.|+|++| .++... ......+++|+.|+|+++ .++... .. ...+++|++|+|++|.+++....
T Consensus 192 ~~~~~l--~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 192 PTFANL--NLAFVDLSRN-MLEGDA-SVLFGSDKNTQKIHLAKN-SLAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp GGGGGC--CCSEEECCSS-EEEECC-GGGCCTTSCCSEEECCSS-EECCBG-GG-CCCCTTCCEEECCSSCCEECCCG
T ss_pred hHHhCC--cccEEECcCC-cccCcC-CHHHhcCCCCCEEECCCC-ceeeec-Cc-ccccCCCCEEECcCCcccCcCCh
Confidence 112222 3999999996 454322 223347899999999996 454221 11 34588999999999999854433
No 78
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.89 E-value=7.7e-11 Score=136.37 Aligned_cols=112 Identities=21% Similarity=0.125 Sum_probs=60.7
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPR 553 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~ 553 (600)
+|+.|+|++|..... +...+..+++|+.|++++|. ++...... + ..+++|+.|+|++| .++...... ...|++
T Consensus 419 ~L~~L~Ls~N~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-~-~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~ 491 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGT--IPSSLGSLSKLRDLKLWLNM-LEGEIPQE-L-MYVKTLETLILDFN-DLTGEIPSG-LSNCTN 491 (768)
T ss_dssp TCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC-CCSCCCGG-G-GGCTTCCEEECCSS-CCCSCCCGG-GGGCTT
T ss_pred CCCEEECcCCcccCc--ccHHHhcCCCCCEEECCCCc-ccCcCCHH-H-cCCCCceEEEecCC-cccCcCCHH-HhcCCC
Confidence 366666666632111 22345566677777776665 33211111 1 12367777777775 343221112 236777
Q ss_pred ccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 554 LCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 554 L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
|+.|+|++|. ++...... ...+++|++|+|++|.++...
T Consensus 492 L~~L~L~~N~-l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 492 LNWISLSNNR-LTGEIPKW-IGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp CCEEECCSSC-CCSCCCGG-GGGCTTCCEEECCSSCCEEEC
T ss_pred CCEEEccCCc-cCCcCChH-HhcCCCCCEEECCCCcccCcC
Confidence 8888888763 44322222 234778888888888776443
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=119.52 Aligned_cols=132 Identities=17% Similarity=0.155 Sum_probs=54.4
Q ss_pred cCCCCCCEEEcCCcccCChh-hHHHHHhcCCCCcEEecCCCCCCCc-hhHHHHHhhccccceEEEccCccCchhhhHHHH
Q 007516 417 NSLPSLTTLSICGACRISDV-GFKALVTSAPALRSINLSQCSLLSS-TSVDILADKLGSFIQELYINDCQSLNAMLILPA 494 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~-~l~~L~~~~p~L~~L~Ls~C~~Itd-~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~ 494 (600)
..+++|+.|+|++ +.++.. .+......+++|+.|+|++|. ++. ... .....++ +|++|+|++|. ++.. .
T Consensus 345 ~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~~l~-~L~~L~Ls~N~-l~~~----~ 415 (520)
T 2z7x_B 345 GHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK-GDCSWTK-SLLSLNMSSNI-LTDT----I 415 (520)
T ss_dssp CCCSSCCEEECCS-SCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG-CSCCCCT-TCCEEECCSSC-CCGG----G
T ss_pred ccCCCCCEEEccC-CccCccccchHHHhhCCCCCEEECCCCc-CCccccc-chhccCc-cCCEEECcCCC-CCcc----h
Confidence 4455556666655 234331 122223345556666665553 222 111 0111222 35556665553 2111 0
Q ss_pred HhcC-CCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 495 LRKL-KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 495 l~~l-~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
...+ ++|+.|++++|. ++. +...+. .+++|++|+|++| .++..... ....+++|+.|+|++++
T Consensus 416 ~~~l~~~L~~L~Ls~N~-l~~--ip~~~~-~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 416 FRCLPPRIKVLDLHSNK-IKS--IPKQVV-KLEALQELNVASN-QLKSVPDG-IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GGSCCTTCCEEECCSSC-CCC--CCGGGG-GCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred hhhhcccCCEEECCCCc-ccc--cchhhh-cCCCCCEEECCCC-cCCccCHH-HhccCCcccEEECcCCC
Confidence 1112 455556655554 331 111111 2355566666554 33321111 12245555566655543
No 80
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.87 E-value=8.9e-10 Score=124.89 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCccEEeecCCCCCChHHHHHHHhcC--CCccEEEeeCCCCChhh
Q 007516 551 CPRLCTLDLSNLYKLTDFGIGYLANGC--QAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 551 cp~L~~LdLs~C~~lTd~~l~~L~~~c--~~Lk~L~Ls~c~isD~~ 594 (600)
.++|+.|+|++| .++......+. .+ ++|++|+|++|.++...
T Consensus 221 ~~~L~~L~L~~n-~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 221 NTSIRNLSLSNS-QLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp TSCCCEEECTTS-CCCEECTTTTG-GGGGSCCCEEECTTSCCCEEC
T ss_pred hccccEEEccCC-cccccChhHhh-ccCcCCCCEEECCCCCcCccC
Confidence 367777777775 34433222222 23 45888888888877544
No 81
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.87 E-value=2.7e-08 Score=95.04 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=84.1
Q ss_pred HHHHHHHhhCCCCCCceeecCCC-CCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHh---cCCCCcEEe
Q 007516 377 QEFTKAFVSCDTKNLTVLQLDRC-GRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVT---SAPALRSIN 452 (600)
Q Consensus 377 ~~L~~L~~~c~l~~L~~L~Ls~c-~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~---~~p~L~~L~ 452 (600)
..+..+...+ ++|++|+|++| . +.+.. ...+...+..+++|++|+|++ +.|++.+...++. ..++|++|+
T Consensus 26 ~~l~~~l~~~--~~L~~L~L~~n~~--i~~~g-~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 26 ETLKRIQNND--PDLEEVNLNNIMN--IPVPT-LKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHHHTTC--TTCCEEECTTCTT--CCHHH-HHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHhcC--CCCCEEEecCCCC--CCHHH-HHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEE
Confidence 4566666666 79999999998 5 34432 234555667789999999999 5699999877655 467899999
Q ss_pred cCCCCCCCchhHHHHHhhcc--ccceEEEc--cCccCchhhh---HHHHHhcCCCCCEEEccCCC
Q 007516 453 LSQCSLLSSTSVDILADKLG--SFIQELYI--NDCQSLNAML---ILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 453 Ls~C~~Itd~~L~~L~~~~~--s~L~~L~L--s~c~~l~d~~---i~~~l~~l~~Le~L~Ls~c~ 510 (600)
|++| .|++.++..++..+. ..|++|+| ++| .+++.+ +...+...++|+.|+|+++.
T Consensus 100 L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 100 VESN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 9998 599998888776542 23666666 444 233332 23334444555555554443
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.86 E-value=1.5e-09 Score=104.04 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=99.4
Q ss_pred CCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhc
Q 007516 445 APALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYAC 524 (600)
Q Consensus 445 ~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~ 524 (600)
+++|+.|++++|. +++.. .+ ..++ +|++|++++| .++.. ..+..+++|++|+++++. +++.....+ ..
T Consensus 43 l~~L~~L~l~~n~-i~~l~--~l-~~l~-~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~-l~~~~~~~l--~~ 110 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT--GI-EYAH-NIKDLTINNI-HATNY---NPISGLSNLERLRIMGKD-VTSDKIPNL--SG 110 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT--TG-GGCT-TCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTT-CBGGGSCCC--TT
T ss_pred cCCccEEeccCCC-ccChH--HH-hcCC-CCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCc-cCcccChhh--cC
Confidence 5789999999874 55422 22 2444 5999999999 45443 367889999999999987 665433222 23
Q ss_pred CCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 525 GHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 525 ~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+++|++|+|++| .+++.....+. .+++|+.|+|++|..+++.. ....+++|++|++++|.+++-
T Consensus 111 l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 111 LTSLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CTTCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC
T ss_pred CCCCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh
Confidence 589999999996 68876666665 79999999999987577643 245699999999999999874
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.83 E-value=1.4e-08 Score=103.81 Aligned_cols=165 Identities=20% Similarity=0.295 Sum_probs=118.5
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.++.|++++|. +++- .. ...+ ++|++|+|++|.. .+. .. +..+++|+.|+|++| .+++.. .
T Consensus 46 ~~L~~L~l~~~~-i~~~--~~-~~~l--~~L~~L~L~~n~l--~~~------~~-l~~l~~L~~L~l~~n-~l~~~~--~ 107 (291)
T 1h6t_A 46 NSIDQIIANNSD-IKSV--QG-IQYL--PNVTKLFLNGNKL--TDI------KP-LANLKNLGWLFLDEN-KVKDLS--S 107 (291)
T ss_dssp HTCCEEECTTSC-CCCC--TT-GGGC--TTCCEEECCSSCC--CCC------GG-GTTCTTCCEEECCSS-CCCCGG--G
T ss_pred CcccEEEccCCC-cccC--hh-HhcC--CCCCEEEccCCcc--CCC------cc-cccCCCCCEEECCCC-cCCCCh--h
Confidence 567899999986 4431 12 2334 8999999999973 221 11 578999999999984 566532 2
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
...+++|+.|+|++|. ++.. ..+. .++ +|+.|+|++|. ++.. ..+..+++|+.|++++|. +++...
T Consensus 108 -l~~l~~L~~L~L~~n~-i~~~--~~l~-~l~-~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~--- 173 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHNG-ISDI--NGLV-HLP-QLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP--- 173 (291)
T ss_dssp -GTTCTTCCEEECTTSC-CCCC--GGGG-GCT-TCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG---
T ss_pred -hccCCCCCEEECCCCc-CCCC--hhhc-CCC-CCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh---
Confidence 4568999999999985 5553 2222 444 59999999995 4432 467899999999999986 654321
Q ss_pred HHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCC
Q 007516 521 VYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNL 562 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C 562 (600)
+ ..+++|++|+|++| .+++. .. ...+++|+.|+|+++
T Consensus 174 l-~~l~~L~~L~L~~N-~i~~l--~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 L-AGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp G-TTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEEEEEE
T ss_pred h-cCCCccCEEECCCC-cCCCC--hh-hccCCCCCEEECcCC
Confidence 2 34589999999997 67763 23 347899999999985
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.82 E-value=7.3e-09 Score=116.95 Aligned_cols=167 Identities=20% Similarity=0.285 Sum_probs=116.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...++.|++++|. +.. +.. +..| ++|+.|+|++|.. .+. . . +..|++|+.|+|++| .+++..
T Consensus 42 L~~L~~L~l~~n~-i~~--l~~-l~~l--~~L~~L~Ls~N~l--~~~-~-----~-l~~l~~L~~L~Ls~N-~l~~l~-- 103 (605)
T 1m9s_A 42 LNSIDQIIANNSD-IKS--VQG-IQYL--PNVTKLFLNGNKL--TDI-K-----P-LTNLKNLGWLFLDEN-KIKDLS-- 103 (605)
T ss_dssp HTTCCCCBCTTCC-CCC--CTT-GGGC--TTCCEEECTTSCC--CCC-G-----G-GGGCTTCCEEECCSS-CCCCCT--
T ss_pred CCCCCEEECcCCC-CCC--ChH-HccC--CCCCEEEeeCCCC--CCC-h-----h-hccCCCCCEEECcCC-CCCCCh--
Confidence 3567788888886 443 112 2334 8999999999973 221 1 1 568999999999985 455432
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
. ...+++|+.|+|++|. ++.. ..+. .++ +|+.|+|++|. +... ..+..+++|+.|+|++|. +++...
T Consensus 104 ~-l~~l~~L~~L~Ls~N~-l~~l--~~l~-~l~-~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~-- 170 (605)
T 1m9s_A 104 S-LKDLKKLKSLSLEHNG-ISDI--NGLV-HLP-QLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP-- 170 (605)
T ss_dssp T-STTCTTCCEEECTTSC-CCCC--GGGG-GCT-TCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG--
T ss_pred h-hccCCCCCEEEecCCC-CCCC--cccc-CCC-ccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh--
Confidence 2 3458999999999985 5442 2222 455 59999999995 4432 567899999999999987 554321
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
+ ..+++|+.|+|++| .+++. .. ...|++|+.|+|++|.
T Consensus 171 -l-~~l~~L~~L~Ls~N-~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 -L-AGLTKLQNLYLSKN-HISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp -G-TTCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred -h-ccCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEccCCc
Confidence 2 34589999999997 67663 33 3478999999999863
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.81 E-value=7.5e-10 Score=125.49 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=76.2
Q ss_pred cCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhh---h----HHHHHhcCCCCCEEEccCCCCCChHH
Q 007516 444 SAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAM---L----ILPALRKLKHLEVLSVAGIETVTDEF 516 (600)
Q Consensus 444 ~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~---~----i~~~l~~l~~Le~L~Ls~c~~ltd~~ 516 (600)
.+++|+.|+|++|. ++...-..+ ..++ +|++|+|++|. ++.. . ....+..+++|+.|+|+++. ++..
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~-~~l~-~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i- 551 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDML-EGLE-KLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEI- 551 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCC-
T ss_pred cCCCCCEEECCCCC-CCcCChhhh-cccc-ccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCC-
Confidence 45667777777663 333221111 2333 47777777774 2211 0 00124667777777777764 4321
Q ss_pred HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 517 VRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 517 l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
..-....+++|+.|+|+++ .++.... .....+++|+.|+|+++ .++......+...+++|+.|++++|++.-.
T Consensus 552 -~~~~~~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 552 -PVEVFKDLFELKIIDLGLN-NLNTLPA-SVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp -CTTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred -CHHHcccccCcceeECCCC-CCCcCCH-hHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcccC
Confidence 1101122467888888774 4553211 12346778888888875 566544333332467788888888776543
No 86
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.1e-09 Score=128.49 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=16.2
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCC-CCEEEccCCC
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKH-LEVLSVAGIE 510 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~-Le~L~Ls~c~ 510 (600)
|+.|+|++|. +. .+...+..+++ |+.|+|+++.
T Consensus 597 L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 597 LTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC
T ss_pred ceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC
Confidence 5555555543 22 12233445555 6666666654
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.78 E-value=6.4e-10 Score=111.96 Aligned_cols=185 Identities=22% Similarity=0.183 Sum_probs=119.7
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|+++.. ... . ...+..+++|+.|+|++| .++......+ ..+++|+.|+|++|. ++......+.
T Consensus 28 ~~l~~L~ls~n~l--~~~-~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~ 97 (276)
T 2z62_A 28 FSTKNLDLSFNPL--RHL-G----SYSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNP-IQSLALGAFS 97 (276)
T ss_dssp TTCCEEECTTCCC--CEE-C----TTTTTTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCC-CCEECTTTTT
T ss_pred CCccEEECCCCcc--ccc-C----HhHhccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCCc-cCccChhhhc
Confidence 5799999999873 221 1 113467899999999995 5654332222 458999999999984 5544332332
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChH---HHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDF---SLK 545 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~---~L~ 545 (600)
.++ +|++|++++|...... ...+..+++|++|+++++. ++...+...+. .+++|++|+|++| .++.. .+.
T Consensus 98 -~l~-~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~ 170 (276)
T 2z62_A 98 -GLS-SLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNL-IQSFKLPEYFS-NLTNLEHLDLSSN-KIQSIYCTDLR 170 (276)
T ss_dssp -TCT-TCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSC-CCCCCCCGGGG-GCTTCCEEECCSS-CCCEECGGGGH
T ss_pred -CCc-cccEEECCCCCccccC--chhcccCCCCCEEECcCCc-cceecCchhhc-cCCCCCEEECCCC-CCCcCCHHHhh
Confidence 344 5999999998533211 1136789999999999987 44322212222 3489999999997 56542 333
Q ss_pred HHHhcCCCcc-EEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhh
Q 007516 546 VIAETCPRLC-TLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 546 ~L~~~cp~L~-~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~ 594 (600)
.+. .++.|. .|+++++ .++..... .....+|++|+|++|.++...
T Consensus 171 ~l~-~L~~l~l~L~ls~n-~l~~~~~~--~~~~~~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 171 VLH-QMPLLNLSLDLSLN-PMNFIQPG--AFKEIRLKELALDTNQLKSVP 216 (276)
T ss_dssp HHH-TCTTCCEEEECCSS-CCCEECTT--SSCSCCEEEEECCSSCCSCCC
T ss_pred hhh-hccccceeeecCCC-cccccCcc--ccCCCcccEEECCCCceeecC
Confidence 333 344444 8999985 56643211 112458999999999887543
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.77 E-value=7.8e-10 Score=113.10 Aligned_cols=199 Identities=23% Similarity=0.223 Sum_probs=114.3
Q ss_pred CCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHH
Q 007516 362 SPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKAL 441 (600)
Q Consensus 362 ~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L 441 (600)
.+++|++.++. ++ .+.... .++|+.|+|+++.. ... ....+..+++|+.|+|++ +.++.....
T Consensus 11 ~l~~l~~~~~~-l~-----~ip~~~-~~~l~~L~L~~N~l--~~~-----~~~~~~~l~~L~~L~L~~-n~l~~~~~~-- 73 (290)
T 1p9a_G 11 SHLEVNCDKRN-LT-----ALPPDL-PKDTTILHLSENLL--YTF-----SLATLMPYTRLTQLNLDR-AELTKLQVD-- 73 (290)
T ss_dssp TCCEEECTTSC-CS-----SCCSCC-CTTCCEEECTTSCC--SEE-----EGGGGTTCTTCCEEECTT-SCCCEEECC--
T ss_pred CccEEECCCCC-CC-----cCCCCC-CCCCCEEEcCCCcC--Ccc-----CHHHhhcCCCCCEEECCC-CccCcccCC--
Confidence 45667776654 33 122222 25788888888763 211 112345678888888887 445543221
Q ss_pred HhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHH
Q 007516 442 VTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFV 521 (600)
Q Consensus 442 ~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll 521 (600)
..+++|+.|+|++|. ++.. ......++ +|+.|+|++|. ++.. ....+..+++|+.|+|+++. ++.... ..
T Consensus 74 -~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~-~L~~L~l~~N~-l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~- 143 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQ-LQSL--PLLGQTLP-ALTVLDVSFNR-LTSL-PLGALRGLGELQELYLKGNE-LKTLPP-GL- 143 (290)
T ss_dssp -SCCTTCCEEECCSSC-CSSC--CCCTTTCT-TCCEEECCSSC-CCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-TT-
T ss_pred -CCCCcCCEEECCCCc-CCcC--chhhccCC-CCCEEECCCCc-Cccc-CHHHHcCCCCCCEEECCCCC-CCccCh-hh-
Confidence 357888888888874 4321 11222344 48888888874 3221 11345678888888888875 432111 11
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 522 YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 522 ~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
...+++|+.|+|+++ .++.... .+...+++|+.|+|+++ .++. +..-+..+++|+.|+|++|++.-
T Consensus 144 ~~~l~~L~~L~L~~N-~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 144 LTPTPKLEKLSLANN-NLTELPA-GLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCTTCCEEECTTS-CCSCCCT-TTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCCBCC
T ss_pred cccccCCCEEECCCC-cCCccCH-HHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCCccC
Confidence 123478888888875 4553211 22346788888888875 4552 22222235678888888887653
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.76 E-value=1.6e-10 Score=135.03 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=64.6
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.++.|+|+++. ++...... +.. +++|++|+|++|... .. +. ...+.++++|+.|+|++| .++.....
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~-~~~--l~~L~~LdLs~n~~~-~~-i~----~~~f~~L~~L~~L~Ls~N-~l~~~~p~ 91 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASS-FPF--LEQLQLLELGSQYTP-LT-ID----KEAFRNLPNLRILDLGSS-KIYFLHPD 91 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSS-CSS--CCSCSEEEECTTCCC-CE-EC----TTTTSSCTTCCEEECTTC-CCCEECTT
T ss_pred CCCcCEEECCCCc-CCccChhH-Ccc--cccCeEEeCCCCCCc-cc-cC----HHHhcCCCCCCEEECCCC-cCcccCHh
Confidence 3456667777664 33211111 122 366777777766321 00 00 112356667777777663 34332222
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHH-HHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDI-LADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~-L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
. +..+++|++|+|++|. ++...+.. ....++ +|++|+|++|.. +.......+.++++|++|+|+++.
T Consensus 92 ~-~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~-~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 92 A-FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLK-ALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp S-SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCS-SCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSC
T ss_pred H-ccCCcccCEeeCcCCC-CCcccccCccccccC-CCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCc
Confidence 2 2246667777776663 33211111 111333 467777766642 221111345566667777766654
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.75 E-value=5.7e-10 Score=115.53 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=28.4
Q ss_pred CCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 526 HNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 526 ~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
++|+.|+|++| .++......+ ..+++|+.|+|++| .++. +..-...+++|++|++++|.++..
T Consensus 217 ~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 217 SKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNN-KLSR--VPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp TTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSS-CCCB--CCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCC-cCee--cChhhhcCccCCEEECCCCCCCcc
Confidence 45555555554 3332111111 24555556655554 3331 111123355555666655555544
No 91
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.75 E-value=5.3e-10 Score=126.74 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=88.5
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCC-chhHHHHHhhccccceEEEccCccCchhhhHHHHHhc
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLS-STSVDILADKLGSFIQELYINDCQSLNAMLILPALRK 497 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~It-d~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~ 497 (600)
+++|+.|+|++| .++...-......+++|+.|+|++|. ++ ... .+ ..++ +|+.|+|++|. ++ .+...+..
T Consensus 304 l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~-~~l~-~L~~L~L~~N~-l~--~lp~~l~~ 374 (636)
T 4eco_A 304 GEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AF-GSEI-KLASLNLAYNQ-IT--EIPANFCG 374 (636)
T ss_dssp GGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEECC--CC-EEEE-EESEEECCSSE-EE--ECCTTSEE
T ss_pred CCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccchh--hh-CCCC-CCCEEECCCCc-cc--cccHhhhh
Confidence 356666666653 33311110123345666666666663 32 221 11 1233 47777777764 22 23344667
Q ss_pred CCC-CCEEEccCCCCCChHHHHHHHH-hcCCCccEEEecCCCCCChHHHHHHH------hcCCCccEEeecCCCCCChHH
Q 007516 498 LKH-LEVLSVAGIETVTDEFVRGFVY-ACGHNMKELILTDCVKLTDFSLKVIA------ETCPRLCTLDLSNLYKLTDFG 569 (600)
Q Consensus 498 l~~-Le~L~Ls~c~~ltd~~l~~Ll~-~~~~sLk~L~Ls~C~~LtD~~L~~L~------~~cp~L~~LdLs~C~~lTd~~ 569 (600)
+++ |+.|+++++. ++. +...+. ...++|+.|+|++| .++......+. -.+++|+.|+|++| .++..
T Consensus 375 l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l- 448 (636)
T 4eco_A 375 FTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF- 448 (636)
T ss_dssp ECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-
T ss_pred hcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-
Confidence 777 8888888876 441 211111 11247888999886 44432111111 04568999999986 56632
Q ss_pred HHHHHhcCCCccEEEeeCCCCC
Q 007516 570 IGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 570 l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
...+...+++|++|+|++|.++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCS
T ss_pred CHHHHccCCCCCEEECCCCCCC
Confidence 2345556899999999999887
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.74 E-value=1.7e-10 Score=113.87 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=126.2
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
..++.|+|+++. ++.-.- ..+..+ ++|++|+|+++.. +.. +. ...+..+++|+.|+|++|+.++......
T Consensus 31 ~~l~~L~l~~n~-l~~i~~-~~~~~l--~~L~~L~l~~n~~-l~~-i~----~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPS-HAFSNL--PNISRIYVSIDVT-LQQ-LE----SHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCC-CSEECT-TTTTTC--TTCCEEEEECCSS-CCE-EC----TTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred CcccEEEEeCCc-ceEECH-HHccCC--CCCcEEeCCCCCC-cce-eC----HhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 467889999886 443111 112333 8999999999852 111 11 1134678999999999867776543222
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccce---EEEccCccCchhhhHHHHHhcCCCCC-EEEccCCCCCChHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQ---ELYINDCQSLNAMLILPALRKLKHLE-VLSVAGIETVTDEF 516 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~---~L~Ls~c~~l~d~~i~~~l~~l~~Le-~L~Ls~c~~ltd~~ 516 (600)
+..+++|+.|+|++|. ++.. ..+ ..++ +|+ +|++++|..++... ...+..+++|+ .|+++++. ++.-.
T Consensus 101 -f~~l~~L~~L~l~~n~-l~~l--p~~-~~l~-~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~-l~~i~ 172 (239)
T 2xwt_C 101 -LKELPLLKFLGIFNTG-LKMF--PDL-TKVY-STDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNG-FTSVQ 172 (239)
T ss_dssp -EECCTTCCEEEEEEEC-CCSC--CCC-TTCC-BCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCC-CCEEC
T ss_pred -hCCCCCCCEEeCCCCC-Cccc--ccc-cccc-ccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCC-CcccC
Confidence 2358899999999984 3331 111 2333 366 99999984454321 12467889999 99998876 44211
Q ss_pred HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcC-CCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC
Q 007516 517 VRGFVYACGHNMKELILTDCVKLTDFSLKVIAETC-PRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (600)
Q Consensus 517 l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~c-p~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c 588 (600)
. .... .++|++|+|++|..++...... ...+ ++|+.|+|+++ .++.... ..+++|+.|++++|
T Consensus 173 ~--~~~~-~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 173 G--YAFN-GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp T--TTTT-TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCC----TTCTTCSEEECTTC
T ss_pred H--hhcC-CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCCh----hHhccCceeeccCc
Confidence 1 1112 2689999999975566432222 2356 89999999984 5653211 14778999999876
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.73 E-value=3.3e-09 Score=120.15 Aligned_cols=84 Identities=20% Similarity=0.139 Sum_probs=57.6
Q ss_pred CCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcC
Q 007516 498 LKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC 577 (600)
Q Consensus 498 l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c 577 (600)
+++|+.|+|+++. ++.- ...+++|+.|+|++| .++. +...+++|+.|+|++| .++. +..-...+
T Consensus 220 ~~~L~~L~Ls~N~-L~~l------p~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~Ls~N-~L~~--lp~~l~~l 283 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTSL------PVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLSVYRN-QLTR--LPESLIHL 283 (622)
T ss_dssp CTTCCEEECCSSC-CSCC------CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSS-CCCS--CCGGGGGS
T ss_pred CCCCCEEEccCCc-cCcC------CCCCCcCcEEECCCC-CCCc-----CCcccccCcEEeCCCC-CCCc--CCHHHhhc
Confidence 3677888887775 4431 133478888888886 5553 1125788999999986 5662 23334568
Q ss_pred CCccEEEeeCCCCChhhhhc
Q 007516 578 QAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 578 ~~Lk~L~Ls~c~isD~~i~~ 597 (600)
++|+.|+|++|+++......
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHH
Confidence 99999999999998876553
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.73 E-value=9.8e-10 Score=122.12 Aligned_cols=161 Identities=15% Similarity=0.138 Sum_probs=101.8
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCch-hHHHHHhhccccceEEEccCccCchhhhHHHHH
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSST-SVDILADKLGSFIQELYINDCQSLNAMLILPAL 495 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~-~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l 495 (600)
..+++|+.|+|++ +.+++.....+ ..+++|+.|+|++|. ++.. .+......++ +|+.|+|++|...... -...+
T Consensus 350 ~~l~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~-~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQ-NVFTDSVFQGC-STLKRLQTLILQRNG-LKNFFKVALMTKNMS-SLETLDVSLNSLNSHA-YDRTC 424 (562)
T ss_dssp SSCCCCCEEECCS-SCCCTTTTTTC-CSCSSCCEEECCSSC-CCBTTHHHHTTTTCT-TCCEEECTTSCCBSCC-SSCCC
T ss_pred cCCCCceEEECCC-Cccccchhhhh-cccCCCCEEECCCCC-cCCcccchhhhcCCC-CCCEEECCCCcCCCcc-Chhhh
Confidence 5678888888888 45554332222 457889999998874 5542 2222223445 5899999888532211 01235
Q ss_pred hcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHh
Q 007516 496 RKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN 575 (600)
Q Consensus 496 ~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~ 575 (600)
..+++|+.|+++++. ++..... ...++|+.|+|++| .++. +..-...+++|+.|+|+++ .++.... ....
T Consensus 425 ~~l~~L~~L~l~~n~-l~~~~~~----~l~~~L~~L~L~~N-~l~~--ip~~~~~l~~L~~L~L~~N-~l~~l~~-~~~~ 494 (562)
T 3a79_B 425 AWAESILVLNLSSNM-LTGSVFR----CLPPKVKVLDLHNN-RIMS--IPKDVTHLQALQELNVASN-QLKSVPD-GVFD 494 (562)
T ss_dssp CCCTTCCEEECCSSC-CCGGGGS----SCCTTCSEEECCSS-CCCC--CCTTTTSSCCCSEEECCSS-CCCCCCT-TSTT
T ss_pred cCcccCCEEECCCCC-CCcchhh----hhcCcCCEEECCCC-cCcc--cChhhcCCCCCCEEECCCC-CCCCCCH-HHHh
Confidence 577889999998887 6543221 11268999999986 5652 2221226889999999985 5663211 1244
Q ss_pred cCCCccEEEeeCCCCCh
Q 007516 576 GCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 576 ~c~~Lk~L~Ls~c~isD 592 (600)
.+++|+.|+|++|+++.
T Consensus 495 ~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 495 RLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp TCTTCCCEECCSCCBCC
T ss_pred cCCCCCEEEecCCCcCC
Confidence 58889999999998874
No 95
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.73 E-value=3.5e-09 Score=98.58 Aligned_cols=109 Identities=19% Similarity=0.113 Sum_probs=60.1
Q ss_pred ceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCc
Q 007516 475 IQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRL 554 (600)
Q Consensus 475 L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L 554 (600)
|+.|+|++|. ++.. ..+..+++|+.|++++|. ++.. +..++. .+++|++|+|++| .+++.........+++|
T Consensus 51 L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L 122 (168)
T 2ell_A 51 LEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAE-KLPNLTHLNLSGN-KLKDISTLEPLKKLECL 122 (168)
T ss_dssp CCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHH-HCTTCCEEECBSS-SCCSSGGGGGGSSCSCC
T ss_pred CCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHh-hCCCCCEEeccCC-ccCcchhHHHHhcCCCC
Confidence 6666666654 3321 344556666666666665 3331 112222 2367777777775 45542211222367778
Q ss_pred cEEeecCCCCCChHHH--HHHHhcCCCccEEEeeCCCCCh
Q 007516 555 CTLDLSNLYKLTDFGI--GYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 555 ~~LdLs~C~~lTd~~l--~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
+.|+|++| .++.... ......+++|++|++++|.+..
T Consensus 123 ~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 123 KSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888775 3443321 2345567888888888876643
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.71 E-value=1.4e-09 Score=123.14 Aligned_cols=209 Identities=14% Similarity=0.100 Sum_probs=132.2
Q ss_pred CCCCcEEEecCCCCCCH-HHHHHHHhh---CCCCCCceeecCCCCCCCCchhhHHHHHH--HhcCCCCCCEEEcCCcccC
Q 007516 360 SGSPTEIRLRDCSWLTE-QEFTKAFVS---CDTKNLTVLQLDRCGRCMPDYILLSTLAS--SLNSLPSLTTLSICGACRI 433 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd-~~L~~L~~~---c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~--~~~~l~~L~~L~Ls~c~~L 433 (600)
.+.++.|+|++|..++. .....+... ..+++|++|+|++|.. . .++. .+..+++|+.|+|++| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l--~------~ip~~~~l~~l~~L~~L~L~~N-~l 342 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL--K------TFPVETSLQKMKKLGMLECLYN-QL 342 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC--S------SCCCHHHHTTCTTCCEEECCSC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC--C------ccCchhhhccCCCCCEEeCcCC-cC
Confidence 46789999999976775 222223221 1127999999999973 1 1222 4578999999999985 44
Q ss_pred C-hhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhc--CCCCCEEEccCCC
Q 007516 434 S-DVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRK--LKHLEVLSVAGIE 510 (600)
Q Consensus 434 t-D~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~--l~~Le~L~Ls~c~ 510 (600)
+ ... ....+++|+.|+|++|. ++. +..-...++.+|++|+|++|. ++. +...+.. +++|+.|+++++.
T Consensus 343 ~g~ip---~~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~~L~~L~Ls~N~-l~~--lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 343 EGKLP---AFGSEIKLASLNLAYNQ-ITE--IPANFCGFTEQVENLSFAHNK-LKY--IPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp EEECC---CCEEEEEESEEECCSSE-EEE--CCTTSEEECTTCCEEECCSSC-CSS--CCSCCCTTCSSCEEEEECCSSC
T ss_pred ccchh---hhCCCCCCCEEECCCCc-ccc--ccHhhhhhcccCcEEEccCCc-Ccc--cchhhhhcccCccCEEECcCCc
Confidence 4 332 23457899999999984 331 111112334239999999996 332 2233333 4489999999987
Q ss_pred CCChHHHHHHH-----HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHh-------cCC
Q 007516 511 TVTDEFVRGFV-----YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLAN-------GCQ 578 (600)
Q Consensus 511 ~ltd~~l~~Ll-----~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~-------~c~ 578 (600)
++......+. ...+++|+.|+|++| .++.. ...+...+++|+.|+|++| .++... ..+.. .|+
T Consensus 414 -l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 414 -IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGN-MLTEIP-KNSLKDENENFKNTY 488 (636)
T ss_dssp -TTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSS-CCSBCC-SSSSEETTEECTTGG
T ss_pred -CCCcchhhhcccccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCC-CCCCcC-HHHhccccccccccC
Confidence 4432111110 002368999999996 56532 2234557899999999996 565211 11111 123
Q ss_pred CccEEEeeCCCCC
Q 007516 579 AIQTLKLCRNAFR 591 (600)
Q Consensus 579 ~Lk~L~Ls~c~is 591 (600)
+|++|+|++|.++
T Consensus 489 ~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 489 LLTSIDLRFNKLT 501 (636)
T ss_dssp GCCEEECCSSCCC
T ss_pred CccEEECcCCcCC
Confidence 8999999999988
No 97
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.70 E-value=6.4e-09 Score=115.52 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|+|+++. ++. +... .+++|++|+|++|.. ... .++..+..+++|+.|+|++ +.++...+..
T Consensus 100 ~~L~~L~Ls~N~-l~~-----lp~~-~l~~L~~L~Ls~N~l--~~l----~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~ 165 (562)
T 3a79_B 100 QDLEYLDVSHNR-LQN-----ISCC-PMASLRHLDLSFNDF--DVL----PVCKEFGNLTKLTFLGLSA-AKFRQLDLLP 165 (562)
T ss_dssp TTCCEEECTTSC-CCE-----ECSC-CCTTCSEEECCSSCC--SBC----CCCGGGGGCTTCCEEEEEC-SBCCTTTTGG
T ss_pred CCCCEEECCCCc-CCc-----cCcc-ccccCCEEECCCCCc--ccc----CchHhhcccCcccEEecCC-CccccCchhh
Confidence 567777777775 442 1111 247788888877763 110 0112345677888888887 4555533322
Q ss_pred HHhcCCCC--cEEecCCCC
Q 007516 441 LVTSAPAL--RSINLSQCS 457 (600)
Q Consensus 441 L~~~~p~L--~~L~Ls~C~ 457 (600)
+++| +.|+|++|.
T Consensus 166 ----l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 166 ----VAHLHLSCILLDLVS 180 (562)
T ss_dssp ----GTTSCEEEEEEEESS
T ss_pred ----hhhceeeEEEeeccc
Confidence 3445 777777763
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.69 E-value=6.1e-10 Score=109.80 Aligned_cols=184 Identities=15% Similarity=0.124 Sum_probs=120.7
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|+|+++.. .. +. ...+..+++|+.|+|+++..++...... +..+++|++|+|++|..++......+.
T Consensus 31 ~~l~~L~l~~n~l--~~-i~----~~~~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RT-IP----SHAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp TTCCEEEEESCCC--SE-EC----TTTTTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred CcccEEEEeCCcc--eE-EC----HHHccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 6899999999873 21 11 1234679999999999965455433222 245899999999984456654322222
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCC---EEEccCCCCCChHHHHHHHHhcCCCcc-EEEecCCCCCChHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLE---VLSVAGIETVTDEFVRGFVYACGHNMK-ELILTDCVKLTDFSL 544 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le---~L~Ls~c~~ltd~~l~~Ll~~~~~sLk-~L~Ls~C~~LtD~~L 544 (600)
.++ +|++|+|++|. ++.. .. +..+++|+ .|+++++..++...... + ..+++|+ .|+|+++ .++....
T Consensus 103 -~l~-~L~~L~l~~n~-l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~-~~l~~L~~~L~l~~n-~l~~i~~ 173 (239)
T 2xwt_C 103 -ELP-LLKFLGIFNTG-LKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNA-F-QGLCNETLTLKLYNN-GFTSVQG 173 (239)
T ss_dssp -CCT-TCCEEEEEEEC-CCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTT-T-TTTBSSEEEEECCSC-CCCEECT
T ss_pred -CCC-CCCEEeCCCCC-Cccc--cc-cccccccccccEEECCCCcchhhcCccc-c-cchhcceeEEEcCCC-CCcccCH
Confidence 344 59999999985 3322 12 66777887 99999983355321111 1 2348999 9999986 5653221
Q ss_pred HHHHhcCCCccEEeecCCCCCChHHHHHHHhcC-CCccEEEeeCCCCCh
Q 007516 545 KVIAETCPRLCTLDLSNLYKLTDFGIGYLANGC-QAIQTLKLCRNAFRF 592 (600)
Q Consensus 545 ~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c-~~Lk~L~Ls~c~isD 592 (600)
. .. ..++|+.|+|++|..++.... .....+ ++|+.|+|++|.++.
T Consensus 174 ~-~~-~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 174 Y-AF-NGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp T-TT-TTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCC
T ss_pred h-hc-CCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCcccc
Confidence 1 22 237899999999755764322 223457 899999999998874
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.69 E-value=9.8e-10 Score=128.44 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=41.3
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.|+.|+|++|. ++.... ..+.. +++|++|+|++|.. .+.+.. ...+..+++|++|+|++| .++......
T Consensus 73 ~~L~~L~Ls~N~-l~~~~p-~~~~~--l~~L~~L~Ls~n~l--~~~~~~---~~~~~~L~~L~~L~Ls~N-~l~~~~~~~ 142 (844)
T 3j0a_A 73 PNLRILDLGSSK-IYFLHP-DAFQG--LFHLFELRLYFCGL--SDAVLK---DGYFRNLKALTRLDLSKN-QIRSLYLHP 142 (844)
T ss_dssp TTCCEEECTTCC-CCEECT-TSSCS--CSSCCCEECTTCCC--SSCCST---TCCCSSCSSCCEEEEESC-CCCCCCCCG
T ss_pred CCCCEEECCCCc-CcccCH-hHccC--CcccCEeeCcCCCC--Cccccc---CccccccCCCCEEECCCC-cccccccch
Confidence 456667776664 332110 11122 26677777776652 110000 012355667777777663 333322222
Q ss_pred HHhcCCCCcEEecCCC
Q 007516 441 LVTSAPALRSINLSQC 456 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C 456 (600)
.+..+++|+.|+|++|
T Consensus 143 ~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 143 SFGKLNSLKSIDFSSN 158 (844)
T ss_dssp GGGTCSSCCEEEEESS
T ss_pred hHhhCCCCCEEECCCC
Confidence 2334667777777666
No 100
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.68 E-value=2.2e-08 Score=91.23 Aligned_cols=12 Identities=8% Similarity=0.005 Sum_probs=5.8
Q ss_pred CCCCcEEecCCC
Q 007516 445 APALRSINLSQC 456 (600)
Q Consensus 445 ~p~L~~L~Ls~C 456 (600)
+++|+.|++++|
T Consensus 41 l~~L~~L~l~~n 52 (149)
T 2je0_A 41 FEELEFLSTINV 52 (149)
T ss_dssp CTTCCEEECTTS
T ss_pred cCCCcEEECcCC
Confidence 444445554444
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.66 E-value=3.8e-09 Score=106.27 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=127.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHH
Q 007516 363 PTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALV 442 (600)
Q Consensus 363 L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~ 442 (600)
.+.+++++.. ++. +.... .++|++|+|+++.. .. + ....+..+++|+.|+|++ +.++.... .++
T Consensus 18 ~~~l~~~~~~-l~~-----ip~~~-~~~l~~L~l~~n~l--~~-~----~~~~~~~l~~L~~L~l~~-n~l~~i~~-~~~ 81 (270)
T 2o6q_A 18 KNSVDCSSKK-LTA-----IPSNI-PADTKKLDLQSNKL--SS-L----PSKAFHRLTKLRLLYLND-NKLQTLPA-GIF 81 (270)
T ss_dssp TTEEECTTSC-CSS-----CCSCC-CTTCSEEECCSSCC--SC-C----CTTSSSSCTTCCEEECCS-SCCSCCCT-TTT
T ss_pred CCEEEccCCC-CCc-----cCCCC-CCCCCEEECcCCCC--Ce-e----CHHHhcCCCCCCEEECCC-CccCeeCh-hhh
Confidence 4567776654 332 22222 25799999998863 11 1 012346789999999998 44543221 223
Q ss_pred hcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHH
Q 007516 443 TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVY 522 (600)
Q Consensus 443 ~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~ 522 (600)
..+++|+.|+|++|. ++......+ ..++ +|++|+|++|. ++.. ....+..+++|+.|+|+++. ++.... ..+
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~- 153 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVF-DQLV-NLAELRLDRNQ-LKSL-PPRVFDSLTKLTYLSLGYNE-LQSLPK-GVF- 153 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTT-TTCS-SCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTT-
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHc-cccc-CCCEEECCCCc-cCee-CHHHhCcCcCCCEEECCCCc-CCccCH-hHc-
Confidence 458999999999984 544332222 2344 59999999985 3221 12346789999999999986 443211 111
Q ss_pred hcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 523 ACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 523 ~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+++|++|+|++| .++...... ...+++|+.|+|+++ .++.... .....+++|+.|+|++|++.-
T Consensus 154 ~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 154 DKLTSLKELRLYNN-QLKRVPEGA-FDKLTELKTLKLDNN-QLKRVPE-GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcccceeEecCC-cCcEeChhH-hccCCCcCEEECCCC-cCCcCCH-HHhccccCCCEEEecCCCeeC
Confidence 23489999999986 455422222 236889999999996 5664322 223458899999999998754
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=4.8e-09 Score=123.08 Aligned_cols=207 Identities=17% Similarity=0.133 Sum_probs=131.6
Q ss_pred hCCCCcEEEecCCCCCCHH----------------HHHHHH--hhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCC
Q 007516 359 FSGSPTEIRLRDCSWLTEQ----------------EFTKAF--VSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLP 420 (600)
Q Consensus 359 ~~~~L~~L~L~~C~~Ltd~----------------~L~~L~--~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~ 420 (600)
..+.++.|+|+++. ++.. .+..-. .. +++|+.|+|++|... ..++..+.+++
T Consensus 446 ~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~--L~~L~~L~Ls~N~l~-------~~iP~~l~~L~ 515 (876)
T 4ecn_A 446 RLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSN--LKDLTDVELYNCPNM-------TQLPDFLYDLP 515 (876)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEESCTTC-------CSCCGGGGGCS
T ss_pred cCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhcc--CCCCCEEECcCCCCC-------ccChHHHhCCC
Confidence 34678999999997 6652 011111 13 389999999998631 11223457899
Q ss_pred CCCEEEcCCcccCCh-hh---HHHHH---hcCCCCcEEecCCCCCCCchhHHH--HHhhccccceEEEccCccCchhhhH
Q 007516 421 SLTTLSICGACRISD-VG---FKALV---TSAPALRSINLSQCSLLSSTSVDI--LADKLGSFIQELYINDCQSLNAMLI 491 (600)
Q Consensus 421 ~L~~L~Ls~c~~LtD-~~---l~~L~---~~~p~L~~L~Ls~C~~Itd~~L~~--L~~~~~s~L~~L~Ls~c~~l~d~~i 491 (600)
+|+.|+|++|..++. .. +..+. ..+++|+.|+|++|. ++. +.. ....++ +|+.|+|++|. ++. +
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~--ip~~~~l~~L~-~L~~L~Ls~N~-l~~--l 588 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEE--FPASASLQKMV-KLGLLDCVHNK-VRH--L 588 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCB--CCCHHHHTTCT-TCCEEECTTSC-CCB--C
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCc--cCChhhhhcCC-CCCEEECCCCC-ccc--c
Confidence 999999999654765 22 22222 345799999999985 442 222 222455 59999999985 442 3
Q ss_pred HHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCC-ccEEEecCCCCCChHHHHHHHhcC--CCccEEeecCCCCCChH
Q 007516 492 LPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHN-MKELILTDCVKLTDFSLKVIAETC--PRLCTLDLSNLYKLTDF 568 (600)
Q Consensus 492 ~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~s-Lk~L~Ls~C~~LtD~~L~~L~~~c--p~L~~LdLs~C~~lTd~ 568 (600)
. .+..+++|+.|+|+++. ++ .+...+.. +++ |+.|+|++| .++. +......+ ++|+.|+|++| .++..
T Consensus 589 p-~~~~L~~L~~L~Ls~N~-l~--~lp~~l~~-l~~~L~~L~Ls~N-~L~~--lp~~~~~~~~~~L~~L~Ls~N-~l~g~ 659 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQ-IE--EIPEDFCA-FTDQVEGLGFSHN-KLKY--IPNIFNAKSVYVMGSVDFSYN-KIGSE 659 (876)
T ss_dssp C-CCCTTSEESEEECCSSC-CS--CCCTTSCE-ECTTCCEEECCSS-CCCS--CCSCCCTTCSSCEEEEECCSS-CTTTT
T ss_pred h-hhcCCCcceEEECcCCc-cc--cchHHHhh-ccccCCEEECcCC-CCCc--CchhhhccccCCCCEEECcCC-cCCCc
Confidence 3 67888999999999887 44 12222222 366 999999997 4552 22222223 45999999996 45432
Q ss_pred HHHHHH-----hcCCCccEEEeeCCCCCh
Q 007516 569 GIGYLA-----NGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 569 ~l~~L~-----~~c~~Lk~L~Ls~c~isD 592 (600)
. ..+. -.+++|+.|+|++|.++.
T Consensus 660 i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~ 687 (876)
T 4ecn_A 660 G-RNISCSMDDYKGINASTVTLSYNEIQK 687 (876)
T ss_dssp S-SSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred c-ccchhhhccccCCCcCEEEccCCcCCc
Confidence 1 1111 124589999999998873
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.65 E-value=6.2e-09 Score=103.56 Aligned_cols=155 Identities=17% Similarity=0.219 Sum_probs=79.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|+|+++.. ... ....+..+++|+.|+|++ +.++...... +..+++|+.|+|++|. ++......+
T Consensus 35 ~~l~~L~L~~n~l--~~~-----~~~~~~~l~~L~~L~L~~-n~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~- 103 (251)
T 3m19_A 35 ADTEKLDLQSTGL--ATL-----SDATFRGLTKLTWLNLDY-NQLQTLSAGV-FDDLTELGTLGLANNQ-LASLPLGVF- 103 (251)
T ss_dssp TTCCEEECTTSCC--CCC-----CTTTTTTCTTCCEEECTT-SCCCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTTTT-
T ss_pred CCCCEEEccCCCc--Ccc-----CHhHhcCcccCCEEECCC-CcCCccCHhH-hccCCcCCEEECCCCc-ccccChhHh-
Confidence 5777888877762 110 011235677777777777 4444332221 2346777777777763 443221111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
..++ +|++|+|++|. ++.. ....+..+++|+.|+|+++. ++..... .+ ..+++|++|+|+++ .++..... ..
T Consensus 104 ~~l~-~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~-~~l~~L~~L~L~~N-~l~~~~~~-~~ 175 (251)
T 3m19_A 104 DHLT-QLDKLYLGGNQ-LKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAG-AF-DKLTNLQTLSLSTN-QLQSVPHG-AF 175 (251)
T ss_dssp TTCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-TT-TTCTTCCEEECCSS-CCSCCCTT-TT
T ss_pred cccC-CCCEEEcCCCc-CCCc-ChhHhccCCcccEEECcCCc-CCccCHH-Hc-CcCcCCCEEECCCC-cCCccCHH-HH
Confidence 2333 47777777774 3221 11234566777777776664 3321110 01 12366777777664 34322111 12
Q ss_pred hcCCCccEEeecCC
Q 007516 549 ETCPRLCTLDLSNL 562 (600)
Q Consensus 549 ~~cp~L~~LdLs~C 562 (600)
..+++|+.|+|+++
T Consensus 176 ~~l~~L~~L~l~~N 189 (251)
T 3m19_A 176 DRLGKLQTITLFGN 189 (251)
T ss_dssp TTCTTCCEEECCSC
T ss_pred hCCCCCCEEEeeCC
Confidence 35566777777664
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.63 E-value=1.7e-08 Score=101.66 Aligned_cols=142 Identities=17% Similarity=0.243 Sum_probs=79.7
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|++++|.. .+ +. .+..+++|+.|+|++ +.+++... ...+++|+.|+|++|. ++... .+.
T Consensus 41 ~~L~~L~l~~n~i--~~------l~-~l~~l~~L~~L~L~~-N~i~~~~~---l~~l~~L~~L~L~~N~-l~~l~--~~~ 104 (263)
T 1xeu_A 41 SGVQNFNGDNSNI--QS------LA-GMQFFTNLKELHLSH-NQISDLSP---LKDLTKLEELSVNRNR-LKNLN--GIP 104 (263)
T ss_dssp TTCSEEECTTSCC--CC------CT-TGGGCTTCCEEECCS-SCCCCCGG---GTTCSSCCEEECCSSC-CSCCT--TCC
T ss_pred CcCcEEECcCCCc--cc------ch-HHhhCCCCCEEECCC-CccCCChh---hccCCCCCEEECCCCc-cCCcC--ccc
Confidence 6788888887752 21 11 235577788888877 34554432 3457778888887774 43311 111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
. .+|+.|+|++|. ++.. ..+..+++|+.|+++++. +++.. . + ..+++|+.|+|++| .+++. ...
T Consensus 105 ~---~~L~~L~L~~N~-l~~~---~~l~~l~~L~~L~Ls~N~-i~~~~--~-l-~~l~~L~~L~L~~N-~i~~~---~~l 168 (263)
T 1xeu_A 105 S---ACLSRLFLDNNE-LRDT---DSLIHLKNLEILSIRNNK-LKSIV--M-L-GFLSKLEVLDLHGN-EITNT---GGL 168 (263)
T ss_dssp C---SSCCEEECCSSC-CSBS---GGGTTCTTCCEEECTTSC-CCBCG--G-G-GGCTTCCEEECTTS-CCCBC---TTS
T ss_pred c---CcccEEEccCCc-cCCC---hhhcCcccccEEECCCCc-CCCCh--H-H-ccCCCCCEEECCCC-cCcch---HHh
Confidence 1 257777777774 3332 235667777777776665 44321 1 1 22366666766664 45443 122
Q ss_pred hcCCCccEEeecCC
Q 007516 549 ETCPRLCTLDLSNL 562 (600)
Q Consensus 549 ~~cp~L~~LdLs~C 562 (600)
..+++|+.|+|+++
T Consensus 169 ~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQ 182 (263)
T ss_dssp TTCCCCCEEEEEEE
T ss_pred ccCCCCCEEeCCCC
Confidence 34566666666653
No 105
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=2.9e-08 Score=90.42 Aligned_cols=107 Identities=20% Similarity=0.326 Sum_probs=49.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|++++|.. .+ ..++..+..+++|+.|++++| .+++. .....+++|+.|+|++|. ++.. +..+.
T Consensus 17 ~~l~~L~l~~n~l--~~----~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~ 84 (149)
T 2je0_A 17 SDVKELVLDNSRS--NE----GKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLA 84 (149)
T ss_dssp GGCSEEECTTCBC--BT----TBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHH
T ss_pred ccCeEEEccCCcC--Ch----hHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHh
Confidence 5666666666652 10 011123355667777777763 44433 222345666666666653 3331 12222
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCC
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI 509 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c 509 (600)
..++ +|++|++++|. ++.......+..+++|+.|+++++
T Consensus 85 ~~l~-~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 85 EKCP-NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp HHCT-TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred hhCC-CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 2233 35555555553 322111233444555555555444
No 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.62 E-value=1.3e-08 Score=115.29 Aligned_cols=180 Identities=22% Similarity=0.209 Sum_probs=90.2
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.++++.|+|++|. ++. +... +++|++|+|++|.. .. +...+++|+.|+|++| .++.
T Consensus 80 l~~L~~L~Ls~N~-l~~-----lp~~--l~~L~~L~Ls~N~l--~~---------l~~~l~~L~~L~L~~N-~l~~---- 135 (622)
T 3g06_A 80 PPELRTLEVSGNQ-LTS-----LPVL--PPGLLELSIFSNPL--TH---------LPALPSGLCKLWIFGN-QLTS---- 135 (622)
T ss_dssp CTTCCEEEECSCC-CSC-----CCCC--CTTCCEEEECSCCC--CC---------CCCCCTTCCEEECCSS-CCSC----
T ss_pred CCCCCEEEcCCCc-CCc-----CCCC--CCCCCEEECcCCcC--CC---------CCCCCCCcCEEECCCC-CCCc----
Confidence 3556677777664 332 2221 36777777766652 11 1114566777777763 3432
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHH---
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEF--- 516 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~--- 516 (600)
+...+++|++|+|++|. ++... . .+.+|+.|++++|. ++.. . ..+++|+.|+++++. ++.-.
T Consensus 136 -lp~~l~~L~~L~Ls~N~-l~~l~-----~-~~~~L~~L~L~~N~-l~~l--~---~~~~~L~~L~Ls~N~-l~~l~~~~ 200 (622)
T 3g06_A 136 -LPVLPPGLQELSVSDNQ-LASLP-----A-LPSELCKLWAYNNQ-LTSL--P---MLPSGLQELSVSDNQ-LASLPTLP 200 (622)
T ss_dssp -CCCCCTTCCEEECCSSC-CSCCC-----C-CCTTCCEEECCSSC-CSCC--C---CCCTTCCEEECCSSC-CSCCCCCC
T ss_pred -CCCCCCCCCEEECcCCc-CCCcC-----C-ccCCCCEEECCCCC-CCCC--c---ccCCCCcEEECCCCC-CCCCCCcc
Confidence 11234677777777763 33210 0 11234444444432 1111 0 223444444444443 22100
Q ss_pred ------------HHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEE
Q 007516 517 ------------VRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLK 584 (600)
Q Consensus 517 ------------l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~ 584 (600)
+.. +....++|+.|+|++| .++.. ...+++|+.|+|++| .|+. +...+++|+.|+
T Consensus 201 ~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N-~L~~l-----p~~l~~L~~L~Ls~N-~L~~-----lp~~~~~L~~L~ 267 (622)
T 3g06_A 201 SELYKLWAYNNRLTS-LPALPSGLKELIVSGN-RLTSL-----PVLPSELKELMVSGN-RLTS-----LPMLPSGLLSLS 267 (622)
T ss_dssp TTCCEEECCSSCCSS-CCCCCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSC-----CCCCCTTCCEEE
T ss_pred chhhEEECcCCcccc-cCCCCCCCCEEEccCC-ccCcC-----CCCCCcCcEEECCCC-CCCc-----CCcccccCcEEe
Confidence 000 0112256777777775 45531 145677888888875 4552 112567888888
Q ss_pred eeCCCCC
Q 007516 585 LCRNAFR 591 (600)
Q Consensus 585 Ls~c~is 591 (600)
|++|.|+
T Consensus 268 Ls~N~L~ 274 (622)
T 3g06_A 268 VYRNQLT 274 (622)
T ss_dssp CCSSCCC
T ss_pred CCCCCCC
Confidence 8888777
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.58 E-value=1.2e-08 Score=94.91 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=7.1
Q ss_pred cCCCccEEeecCC
Q 007516 550 TCPRLCTLDLSNL 562 (600)
Q Consensus 550 ~cp~L~~LdLs~C 562 (600)
.+++|+.|++++|
T Consensus 145 ~l~~L~~L~l~~n 157 (168)
T 2ell_A 145 LLPQLTYLDGYDR 157 (168)
T ss_dssp TCSSCCEETTEET
T ss_pred hCccCcEecCCCC
Confidence 4555555555554
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.56 E-value=2.4e-08 Score=101.94 Aligned_cols=178 Identities=22% Similarity=0.245 Sum_probs=119.6
Q ss_pred CCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 388 TKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 388 l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
+++|++|+++++.. .. ++ ..-.++|+.|+|++ +.++......+ ..+++|+.|+|++|. ++.....
T Consensus 9 l~~l~~l~~~~~~l--~~------ip--~~~~~~l~~L~L~~-N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~-- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNL--TA------LP--PDLPKDTTILHLSE-NLLYTFSLATL-MPYTRLTQLNLDRAE-LTKLQVD-- 73 (290)
T ss_dssp STTCCEEECTTSCC--SS------CC--SCCCTTCCEEECTT-SCCSEEEGGGG-TTCTTCCEEECTTSC-CCEEECC--
T ss_pred cCCccEEECCCCCC--Cc------CC--CCCCCCCCEEEcCC-CcCCccCHHHh-hcCCCCCEEECCCCc-cCcccCC--
Confidence 37899999988763 11 11 11236899999998 55665443333 358999999999985 5543221
Q ss_pred HhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 007516 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L 547 (600)
..++ +|++|+|++|. ++. +...+..+++|+.|+++++. ++.... ..+ ..+++|++|+|++| .++... ..+
T Consensus 74 -~~l~-~L~~L~Ls~N~-l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~-~~~-~~l~~L~~L~L~~N-~l~~~~-~~~ 143 (290)
T 1p9a_G 74 -GTLP-VLGTLDLSHNQ-LQS--LPLLGQTLPALTVLDVSFNR-LTSLPL-GAL-RGLGELQELYLKGN-ELKTLP-PGL 143 (290)
T ss_dssp -SCCT-TCCEEECCSSC-CSS--CCCCTTTCTTCCEEECCSSC-CCCCCS-STT-TTCTTCCEEECTTS-CCCCCC-TTT
T ss_pred -CCCC-cCCEEECCCCc-CCc--CchhhccCCCCCEEECCCCc-CcccCH-HHH-cCCCCCCEEECCCC-CCCccC-hhh
Confidence 3445 59999999995 332 23456789999999999986 442111 111 23489999999996 565322 122
Q ss_pred HhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 548 AETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 548 ~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
...+++|+.|+|+++ +++... ..+...+++|+.|+|++|.++.
T Consensus 144 ~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 144 LTPTPKLEKLSLANN-NLTELP-AGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp TTTCTTCCEEECTTS-CCSCCC-TTTTTTCTTCCEEECCSSCCCC
T ss_pred cccccCCCEEECCCC-cCCccC-HHHhcCcCCCCEEECCCCcCCc
Confidence 346889999999995 566322 2233458899999999998873
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.54 E-value=8.2e-08 Score=96.60 Aligned_cols=143 Identities=24% Similarity=0.275 Sum_probs=82.5
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...++.|++++|. +++- ..+ .. +++|+.|+|++|.. .+. .. +..+++|+.|+|++| .+++..
T Consensus 40 l~~L~~L~l~~n~-i~~l--~~l-~~--l~~L~~L~L~~N~i--~~~------~~-l~~l~~L~~L~L~~N-~l~~l~-- 101 (263)
T 1xeu_A 40 LSGVQNFNGDNSN-IQSL--AGM-QF--FTNLKELHLSHNQI--SDL------SP-LKDLTKLEELSVNRN-RLKNLN-- 101 (263)
T ss_dssp HTTCSEEECTTSC-CCCC--TTG-GG--CTTCCEEECCSSCC--CCC------GG-GTTCSSCCEEECCSS-CCSCCT--
T ss_pred cCcCcEEECcCCC-cccc--hHH-hh--CCCCCEEECCCCcc--CCC------hh-hccCCCCCEEECCCC-ccCCcC--
Confidence 4567778887774 4431 112 22 36788888877752 211 11 456777888888773 444321
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
.+. . ++|+.|+|++|. ++.. ..+. .++ +|+.|+|++|. +++. ..+..+++|+.|+++++. +++. .
T Consensus 102 ~~~-~-~~L~~L~L~~N~-l~~~--~~l~-~l~-~L~~L~Ls~N~-i~~~---~~l~~l~~L~~L~L~~N~-i~~~---~ 166 (263)
T 1xeu_A 102 GIP-S-ACLSRLFLDNNE-LRDT--DSLI-HLK-NLEILSIRNNK-LKSI---VMLGFLSKLEVLDLHGNE-ITNT---G 166 (263)
T ss_dssp TCC-C-SSCCEEECCSSC-CSBS--GGGT-TCT-TCCEEECTTSC-CCBC---GGGGGCTTCCEEECTTSC-CCBC---T
T ss_pred ccc-c-CcccEEEccCCc-cCCC--hhhc-Ccc-cccEEECCCCc-CCCC---hHHccCCCCCEEECCCCc-Ccch---H
Confidence 111 1 678888887773 4442 1222 344 48888887774 4332 246677788888887776 5443 1
Q ss_pred HHHhcCCCccEEEecCC
Q 007516 520 FVYACGHNMKELILTDC 536 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C 536 (600)
.+ ..+++|+.|+|+++
T Consensus 167 ~l-~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 167 GL-TRLKKVNWIDLTGQ 182 (263)
T ss_dssp TS-TTCCCCCEEEEEEE
T ss_pred Hh-ccCCCCCEEeCCCC
Confidence 11 22467788888775
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.47 E-value=4.4e-08 Score=97.38 Aligned_cols=131 Identities=22% Similarity=0.272 Sum_probs=56.7
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|++|+|+++.. ... ....+..+++|+.|+|++ +.++..... .+..+++|+.|+|++|. ++......+
T Consensus 59 ~~L~~L~L~~n~l--~~~-----~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~- 127 (251)
T 3m19_A 59 TKLTWLNLDYNQL--QTL-----SAGVFDDLTELGTLGLAN-NQLASLPLG-VFDHLTQLDKLYLGGNQ-LKSLPSGVF- 127 (251)
T ss_dssp TTCCEEECTTSCC--CCC-----CTTTTTTCTTCCEEECTT-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-
T ss_pred ccCCEEECCCCcC--Ccc-----CHhHhccCCcCCEEECCC-CcccccChh-HhcccCCCCEEEcCCCc-CCCcChhHh-
Confidence 5666666666542 110 011234456666666665 334322211 12235566666666652 332211111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCC
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDC 536 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C 536 (600)
..++ +|+.|+|++|. ++.. ....+..+++|+.|+|+++. ++.... ..+ ..+++|+.|+|+++
T Consensus 128 ~~l~-~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~l~~N 189 (251)
T 3m19_A 128 DRLT-KLKELRLNTNQ-LQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVPH-GAF-DRLGKLQTITLFGN 189 (251)
T ss_dssp TTCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CSCCCT-TTT-TTCTTCCEEECCSC
T ss_pred ccCC-cccEEECcCCc-CCcc-CHHHcCcCcCCCEEECCCCc-CCccCH-HHH-hCCCCCCEEEeeCC
Confidence 1222 36666666653 2211 01134455666666666554 321110 011 12255666666654
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.43 E-value=7.1e-08 Score=108.15 Aligned_cols=189 Identities=17% Similarity=0.170 Sum_probs=113.4
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
..++.|+|+++. ++. +.... +++|+.|+|++|.. .. ++ ..+++|+.|+|++| .++... .
T Consensus 59 ~~L~~L~Ls~n~-L~~-----lp~~l-~~~L~~L~Ls~N~l--~~------ip---~~l~~L~~L~Ls~N-~l~~ip--~ 117 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSS-----LPDNL-PPQITVLEITQNAL--IS------LP---ELPASLEYLDACDN-RLSTLP--E 117 (571)
T ss_dssp TTCSEEECCSSC-CSC-----CCSCC-CTTCSEEECCSSCC--SC------CC---CCCTTCCEEECCSS-CCSCCC--C
T ss_pred CCccEEEeCCCC-CCc-----cCHhH-cCCCCEEECcCCCC--cc------cc---cccCCCCEEEccCC-CCCCcc--h
Confidence 357788888875 442 22211 26889999988863 11 11 45788899999884 555422 1
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGF 520 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~L 520 (600)
+ ..+|+.|+|++|. ++... ..++ +|+.|+|++|. ++.. .. .+++|+.|+|++|. ++. +..
T Consensus 118 l---~~~L~~L~Ls~N~-l~~lp-----~~l~-~L~~L~Ls~N~-l~~l--p~---~l~~L~~L~Ls~N~-L~~--lp~- 177 (571)
T 3cvr_A 118 L---PASLKHLDVDNNQ-LTMLP-----ELPA-LLEYINADNNQ-LTML--PE---LPTSLEVLSVRNNQ-LTF--LPE- 177 (571)
T ss_dssp C---CTTCCEEECCSSC-CSCCC-----CCCT-TCCEEECCSSC-CSCC--CC---CCTTCCEEECCSSC-CSC--CCC-
T ss_pred h---hcCCCEEECCCCc-CCCCC-----CcCc-cccEEeCCCCc-cCcC--CC---cCCCcCEEECCCCC-CCC--cch-
Confidence 2 2388999998874 44311 1233 58999998885 3321 11 56788999988886 543 212
Q ss_pred HHhcCCCccEEEecCCCCCChHHH--HHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhhhc
Q 007516 521 VYACGHNMKELILTDCVKLTDFSL--KVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFHRD 597 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C~~LtD~~L--~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i~~ 597 (600)
..++|+.|+|++| .|+.... ..+...++.|+.|+|++| .|+. +..-...+++|+.|+|++|+++......
T Consensus 178 ---l~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 178 ---LPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp ---CCTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred ---hhCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 1278899999886 4552111 011122233488999885 5663 2221223888999999999888765544
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.42 E-value=1.2e-08 Score=98.23 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
++|++|+|+++.. .. + ....+..+++|+.|+|++ +.++..... .+..+++|++|+|++|
T Consensus 28 ~~l~~L~l~~n~l--~~-~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 28 AQTTYLDLETNSL--KS-L----PNGVFDELTSLTQLYLGG-NKLQSLPNG-VFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTCSEEECCSSCC--CC-C----CTTTTTTCTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCcEEEcCCCcc--Cc-C----ChhhhcccccCcEEECCC-CccCccChh-hcCCCCCcCEEECCCC
Confidence 4666666666642 11 0 011234556666666665 334322111 1223556666666655
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.36 E-value=1.8e-08 Score=112.02 Aligned_cols=185 Identities=14% Similarity=0.081 Sum_probs=112.4
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
.+|+.|++..+.... +......+++|+.+++.++....... ...+..+++|+.++++.|. +....- ...
T Consensus 397 ~~L~~L~~~~~~~~~--------~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~n~-l~~~~~-~~~ 465 (635)
T 4g8a_A 397 ISLKYLDLSFNGVIT--------MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTH-TRVAFN-GIF 465 (635)
T ss_dssp SCCCEEECCSCSEEE--------ECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTTSC-CEECCT-TTT
T ss_pred hhhhhhhcccccccc--------ccccccccccccchhhhhcccccccc-ccccccccccccccccccc-cccccc-ccc
Confidence 577777777665210 01123467788888887754332221 1123357888899988874 222111 112
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
..++ .|+.|+|++|...... +...+..+++|+.|+|++|. ++...- ..+ ..+++|++|+|+++ .++...... .
T Consensus 466 ~~~~-~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~-~~f-~~l~~L~~L~Ls~N-~l~~l~~~~-~ 538 (635)
T 4g8a_A 466 NGLS-SLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSP-TAF-NSLSSLQVLNMSHN-NFFSLDTFP-Y 538 (635)
T ss_dssp TTCT-TCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECT-TTT-TTCTTCCEEECTTS-CCCBCCCGG-G
T ss_pred ccch-hhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcCh-HHH-cCCCCCCEEECCCC-cCCCCChhH-H
Confidence 2333 5999999988644321 22356788999999999986 543211 111 23489999999996 565422222 3
Q ss_pred hcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
..+++|+.|+|+++ +++......+..-.++|++|+|++|+++-
T Consensus 539 ~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 539 KCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred hCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 47899999999985 56643323333222589999999998874
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=2.3e-07 Score=87.16 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=6.2
Q ss_pred CCCceeecCCCC
Q 007516 389 KNLTVLQLDRCG 400 (600)
Q Consensus 389 ~~L~~L~Ls~c~ 400 (600)
++|+.|++++|.
T Consensus 19 ~~L~~L~l~~n~ 30 (176)
T 1a9n_A 19 VRDRELDLRGYK 30 (176)
T ss_dssp TSCEEEECTTSC
T ss_pred CCceEEEeeCCC
Confidence 455555555553
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.33 E-value=9.4e-08 Score=100.41 Aligned_cols=108 Identities=17% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhc-CCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLN-SLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~-~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
+.|+.|+|+++.. ... . ..... .+++|+.|+|++ +.|+......+ ..+++|+.|+|++|. ++...-..+
T Consensus 39 ~~l~~L~Ls~N~l--~~l-~----~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~ 108 (361)
T 2xot_A 39 SYTALLDLSHNNL--SRL-R----AEWTPTRLTNLHSLLLSH-NHLNFISSEAF-VPVPNLRYLDLSSNH-LHTLDEFLF 108 (361)
T ss_dssp TTCSEEECCSSCC--CEE-C----TTSSSSCCTTCCEEECCS-SCCCEECTTTT-TTCTTCCEEECCSSC-CCEECTTTT
T ss_pred CCCCEEECCCCCC--Ccc-C----hhhhhhcccccCEEECCC-CcCCccChhhc-cCCCCCCEEECCCCc-CCcCCHHHh
Confidence 4567777776652 110 0 01122 566677777766 34443222212 235666666666653 333211111
Q ss_pred HhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 468 ADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
..++ +|+.|+|++|. +... ....+..+++|+.|+|+++.
T Consensus 109 -~~l~-~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 109 -SDLQ-ALEVLLLYNNH-IVVV-DRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp -TTCT-TCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSC
T ss_pred -CCCc-CCCEEECCCCc-ccEE-CHHHhCCcccCCEEECCCCc
Confidence 1223 36666666664 2211 01234555666666665554
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.32 E-value=1.6e-07 Score=88.21 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHh
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALR 496 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~ 496 (600)
..+++|+.|++++| .++.. ..+...+++|+.|+|++|. ++.. ..+ ..++ +|+.|+|++|. ++.. ....+.
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~-l~~~--~~l-~~l~-~L~~L~Ls~N~-l~~~-~~~~~~ 85 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE-IRKL--DGF-PLLR-RLKTLLVNNNR-ICRI-GEGLDQ 85 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC-CCEE--CCC-CCCS-SCCEEECCSSC-CCEE-CSCHHH
T ss_pred CCcCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCC-CCcc--ccc-ccCC-CCCEEECCCCc-cccc-Ccchhh
Confidence 34667777777764 44432 2233334467777777763 4432 111 1233 36666666664 2211 011234
Q ss_pred cCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHH--HHHHHhcCCCccEEeecCC
Q 007516 497 KLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFS--LKVIAETCPRLCTLDLSNL 562 (600)
Q Consensus 497 ~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~--L~~L~~~cp~L~~LdLs~C 562 (600)
.+++|+.|+++++. +++......+ ..+++|+.|+|++|. ++... -..+...+++|+.|+++++
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l-~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPL-ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGG-GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCc-CCcchhhHhh-hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55666666666654 3321100011 123556666666542 32211 0112335555666655553
No 117
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.32 E-value=6.5e-06 Score=79.67 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=45.8
Q ss_pred HHHHhcCCCCCEEEccCCCCCChHHHHHHHHh--cCCCccEEEecCCC--CCChHHHHHHH---hcCCCccEEeecC
Q 007516 492 LPALRKLKHLEVLSVAGIETVTDEFVRGFVYA--CGHNMKELILTDCV--KLTDFSLKVIA---ETCPRLCTLDLSN 561 (600)
Q Consensus 492 ~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~--~~~sLk~L~Ls~C~--~LtD~~L~~L~---~~cp~L~~LdLs~ 561 (600)
...+..-+.|++|+|+++. |++.+...+... ..+.|++|+|++|. .+++.+...|+ ..-+.|+.|+++.
T Consensus 91 A~aL~~N~tL~~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 91 IELIETSPSLRVLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHCSSCCEEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhcCCccCeEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 3455566678888888776 888877766543 22568888887652 56776655544 3446788888765
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.31 E-value=5e-07 Score=98.20 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 361 GSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 361 ~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
+.+++|++++|. ++. +.. +. .+++|++|++++|.. .. +....++|+.|++++| .++... .
T Consensus 131 ~~L~~L~L~~n~-l~~--lp~-~~--~l~~L~~L~l~~N~l--~~---------lp~~~~~L~~L~L~~n-~l~~l~--~ 190 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK--LPE-LQ--NSSFLKIIDVDNNSL--KK---------LPDLPPSLEFIAAGNN-QLEELP--E 190 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CT--TCTTCCEEECCSSCC--SC---------CCCCCTTCCEEECCSS-CCSSCC--C
T ss_pred CCCCEEECcCCC-CCC--Ccc-cC--CCCCCCEEECCCCcC--cc---------cCCCcccccEEECcCC-cCCcCc--c
Confidence 356667776664 332 111 12 236677777766642 10 0112246666666663 333311 1
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
...+++|+.|++++|. ++. +. ..+.+|++|++++|. ++. +. .+..+++|+.|+++++.
T Consensus 191 -~~~l~~L~~L~l~~N~-l~~-----l~-~~~~~L~~L~l~~n~-l~~--lp-~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 191 -LQNLPFLTAIYADNNS-LKK-----LP-DLPLSLESIVAGNNI-LEE--LP-ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp -CTTCTTCCEEECCSSC-CSS-----CC-CCCTTCCEEECCSSC-CSS--CC-CCTTCTTCCEEECCSSC
T ss_pred -ccCCCCCCEEECCCCc-CCc-----CC-CCcCcccEEECcCCc-CCc--cc-ccCCCCCCCEEECCCCc
Confidence 2345666666666653 222 00 011246666666663 221 11 24455666666665554
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.31 E-value=3.5e-07 Score=99.44 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=35.7
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
++|+.|++++| .++... . +..+++|+.|++++|. ++.. ... +.+|++|++++|. ++.. ..+..++
T Consensus 131 ~~L~~L~L~~n-~l~~lp--~-~~~l~~L~~L~l~~N~-l~~l-----p~~-~~~L~~L~L~~n~-l~~l---~~~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP--E-LQNSSFLKIIDVDNNS-LKKL-----PDL-PPSLEFIAAGNNQ-LEEL---PELQNLP 195 (454)
T ss_dssp TTCCEEECCSS-CCSSCC--C-CTTCTTCCEEECCSSC-CSCC-----CCC-CTTCCEEECCSSC-CSSC---CCCTTCT
T ss_pred CCCCEEECcCC-CCCCCc--c-cCCCCCCCEEECCCCc-Cccc-----CCC-cccccEEECcCCc-CCcC---ccccCCC
Confidence 45666666653 333211 2 2345666666666653 3221 101 1246666666653 2221 1245555
Q ss_pred CCCEEEccCCC
Q 007516 500 HLEVLSVAGIE 510 (600)
Q Consensus 500 ~Le~L~Ls~c~ 510 (600)
+|+.|+++++.
T Consensus 196 ~L~~L~l~~N~ 206 (454)
T 1jl5_A 196 FLTAIYADNNS 206 (454)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 66666665554
No 120
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.28 E-value=1.2e-05 Score=77.75 Aligned_cols=125 Identities=10% Similarity=0.141 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhc---CCCCcEEecCCCCCCCchhHHHHHhhc--cccceEEEccCc
Q 007516 409 LSTLASSLNSLPSLTTLSICGACRISDVGFKALVTS---APALRSINLSQCSLLSSTSVDILADKL--GSFIQELYINDC 483 (600)
Q Consensus 409 ~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~---~p~L~~L~Ls~C~~Itd~~L~~L~~~~--~s~L~~L~Ls~c 483 (600)
...+..+..+-+.|++|+|+++..|+|.+...|++. ...|+.|+|++| .|+|.+...|++.+ -..|++|+|++|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 455666777778888888887557888887777654 356888888887 48888877777654 235888888888
Q ss_pred cCchhhh---HHHHHhcCCCCCEEEccCCC--CCChHHHHHH---HHhcCCCccEEEecCC
Q 007516 484 QSLNAML---ILPALRKLKHLEVLSVAGIE--TVTDEFVRGF---VYACGHNMKELILTDC 536 (600)
Q Consensus 484 ~~l~d~~---i~~~l~~l~~Le~L~Ls~c~--~ltd~~l~~L---l~~~~~sLk~L~Ls~C 536 (600)
. +++.+ +...+..-+.|+.|+|+++. .+.+.+...+ +... ++|+.|+++.+
T Consensus 109 ~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 F-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFA 167 (197)
T ss_dssp B-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCC
T ss_pred c-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCC
Confidence 4 55543 33445566678999987653 4677654333 3333 78888888764
No 121
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.26 E-value=3.4e-07 Score=101.58 Aligned_cols=184 Identities=20% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
+++++|+|+++.. +. +. ...+.++++|+.|+|++| .|+.....+ +..+++|++|+|++|. ++......+
T Consensus 52 ~~~~~LdLs~N~i--~~-l~----~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~-l~~l~~~~f- 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RH-LG----SYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGAF- 120 (635)
T ss_dssp TTCCEEECTTSCC--CE-EC----TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCC-CCEECGGGG-
T ss_pred cCCCEEEeeCCCC--CC-CC----HHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCc-CCCCCHHHh-
Confidence 5899999999862 21 11 123467899999999985 454322222 3458899999999984 554332222
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCCh---HHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTD---FSLK 545 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD---~~L~ 545 (600)
..++ +|++|+|++|. ++.. ....+..+++|+.|+|+++. ++...+...+ ..+++|++|+|+++ .++. ..+.
T Consensus 121 ~~L~-~L~~L~Ls~N~-l~~l-~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~l~ 194 (635)
T 4g8a_A 121 SGLS-SLQKLVAVETN-LASL-ENFPIGHLKTLKELNVAHNL-IQSFKLPEYF-SNLTNLEHLDLSSN-KIQSIYCTDLR 194 (635)
T ss_dssp TTCT-TCCEEECTTSC-CCCS-TTCCCTTCTTCCEEECCSSC-CCCCCCCGGG-GGCTTCCEEECCSS-CCCEECGGGGH
T ss_pred cCCC-CCCEEECCCCc-CCCC-ChhhhhcCcccCeeccccCc-cccCCCchhh-ccchhhhhhcccCc-ccccccccccc
Confidence 2444 59999999985 3321 01236788999999998886 4322111222 23488999999986 4433 3444
Q ss_pred HHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCCh
Q 007516 546 VIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 546 ~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.+......+..++++.. .++.... -......+..|++.++..+-
T Consensus 195 ~L~~l~~~~~~~~ls~n-~l~~i~~--~~~~~~~~~~l~l~~n~~~~ 238 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLN-PMNFIQP--GAFKEIRLHKLTLRNNFDSL 238 (635)
T ss_dssp HHHTCTTCCCEEECTTC-CCCEECT--TTTTTCEEEEEEEESCCSSH
T ss_pred chhhhhhhhhhhhcccC-cccccCc--ccccchhhhhhhhhcccccc
Confidence 45433344567777763 4443211 11123456788888876553
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=2.8e-08 Score=111.36 Aligned_cols=124 Identities=25% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcC
Q 007516 446 PALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACG 525 (600)
Q Consensus 446 p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~ 525 (600)
..|+.|+|++|. ++.. ..+ ..++ +|+.|+|++|. ++ .+...+..+++|+.|+|+++. ++. +.. ...+
T Consensus 441 ~~L~~L~Ls~n~-l~~l--p~~-~~l~-~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~--l~~l 507 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVL--CHL-EQLL-LVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNA-LEN--VDG--VANL 507 (567)
T ss_dssp TTCSEEECTTSC-CSSC--CCG-GGGT-TCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSC-CCC--CGG--GTTC
T ss_pred cCceEEEecCCC-CCCC--cCc-cccc-cCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCC-CCC--Ccc--cCCC
Confidence 357777777763 3331 112 2333 47777777764 33 233456677777777777765 443 221 1234
Q ss_pred CCccEEEecCCCCCChHH-HHHHHhcCCCccEEeecCCCCCChH--HHHHHHhcCCCccEEEe
Q 007516 526 HNMKELILTDCVKLTDFS-LKVIAETCPRLCTLDLSNLYKLTDF--GIGYLANGCQAIQTLKL 585 (600)
Q Consensus 526 ~sLk~L~Ls~C~~LtD~~-L~~L~~~cp~L~~LdLs~C~~lTd~--~l~~L~~~c~~Lk~L~L 585 (600)
++|+.|+|++| .++... ...+ ..+++|+.|+|+++ .++.. ....+...+|+|+.|++
T Consensus 508 ~~L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 508 PRLQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 67777777764 454432 2222 35677777777764 34322 12334445677777653
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.12 E-value=6.3e-07 Score=85.73 Aligned_cols=36 Identities=17% Similarity=0.356 Sum_probs=17.9
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
..+++|+.|+|++| .++... . ...+++|+.|+|++|
T Consensus 45 ~~l~~L~~L~ls~n-~l~~l~--~-~~~l~~L~~L~l~~n 80 (198)
T 1ds9_A 45 STLKACKHLALSTN-NIEKIS--S-LSGMENLRILSLGRN 80 (198)
T ss_dssp HHTTTCSEEECSEE-EESCCC--C-HHHHTTCCEEEEEEE
T ss_pred hcCCCCCEEECCCC-CCcccc--c-cccCCCCCEEECCCC
Confidence 44566666666653 333321 1 123456666666655
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.12 E-value=4.3e-07 Score=88.72 Aligned_cols=132 Identities=19% Similarity=0.173 Sum_probs=70.8
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
++|+.|+|++ +.++...... +..+++|+.|+|++|. ++......+. .++ +|++|+|++|. ++.. ....+..++
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~~-~~~l~~L~~L~Ls~N~-i~~~~~~~~~-~l~-~L~~L~Ls~N~-l~~l-~~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPGA-FSPYKKLRRIDLSNNQ-ISELAPDAFQ-GLR-SLNSLVLYGNK-ITEL-PKSLFEGLF 104 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTS-STTCTTCCEEECCSSC-CCEECTTTTT-TCS-SCCEEECCSSC-CCCC-CTTTTTTCT
T ss_pred cCCCEEECCC-CcCCCcCHhH-hhCCCCCCEEECCCCc-CCCcCHHHhh-CCc-CCCEEECCCCc-CCcc-CHhHccCCC
Confidence 5788888887 4455432222 2346788888888874 4433222222 333 48888888774 3221 012345677
Q ss_pred CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
+|+.|+|+++. ++...... + ..+++|+.|+|+++ .++...... ...+++|+.|+|++.+
T Consensus 105 ~L~~L~L~~N~-l~~~~~~~-~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNANK-INCLRVDA-F-QDLHNLNLLSLYDN-KLQTIAKGT-FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC-CCCCCTTT-T-TTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC-CCEeCHHH-c-CCCCCCCEEECCCC-cCCEECHHH-HhCCCCCCEEEeCCCC
Confidence 77777777765 33211111 1 12367777777774 343322111 2246667777777643
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.10 E-value=8.5e-07 Score=85.18 Aligned_cols=159 Identities=17% Similarity=0.126 Sum_probs=104.2
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcC
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l 498 (600)
.++|+.|+|+++ .++..... .+..+++|++|+|++|. ++......+ ..++ +|++|+|++|. ++.. ....+..+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~Ls~n~-l~~~-~~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNG-VFDELTSLTQLYLGGNK-LQSLPNGVF-NKLT-SLTYLNLSTNQ-LQSL-PNGVFDKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTC
T ss_pred CCCCcEEEcCCC-ccCcCChh-hhcccccCcEEECCCCc-cCccChhhc-CCCC-CcCEEECCCCc-CCcc-CHhHhcCc
Confidence 568999999984 56543322 23458999999999984 554322112 2344 59999999985 3321 12346789
Q ss_pred CCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCC
Q 007516 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQ 578 (600)
Q Consensus 499 ~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~ 578 (600)
++|+.|+++++. ++.... ..+ ..+++|++|+|+++ .++.... .....+++|+.|+|++++- + ..|+
T Consensus 100 ~~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~-~--------~~~~ 165 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLPD-GVF-DKLTQLKDLRLYQN-QLKSVPD-GVFDRLTSLQYIWLHDNPW-D--------CTCP 165 (208)
T ss_dssp TTCCEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCCB-C--------CCTT
T ss_pred cCCCEEEcCCCc-CcccCH-hHh-ccCCcCCEEECCCC-ccceeCH-HHhccCCCccEEEecCCCe-e--------cCCC
Confidence 999999999886 443211 111 23489999999986 5553221 2234689999999999643 2 3477
Q ss_pred CccEEEeeCCCCChhhhhcc
Q 007516 579 AIQTLKLCRNAFRFVFHRDF 598 (600)
Q Consensus 579 ~Lk~L~Ls~c~isD~~i~~f 598 (600)
+|+.|+++.|.++......+
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTT
T ss_pred CHHHHHHHHHhCCceeeccC
Confidence 88888888888776554443
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.09 E-value=9.2e-07 Score=86.84 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcC
Q 007516 419 LPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL 498 (600)
Q Consensus 419 l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l 498 (600)
.++|+.|+|++ +.++...... +..+++|+.|+|++|. ++......+ ..++ +|+.|+|++|. ++.. ....+..+
T Consensus 39 ~~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~i~~~~~-~~l~-~L~~L~Ls~N~-l~~l-~~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHD-NQITKLEPGV-FDSLINLKELYLGSNQ-LGALPVGVF-DSLT-QLTVLDLGTNQ-LTVL-PSAVFDRL 111 (229)
T ss_dssp CTTCSEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTC
T ss_pred CCCCCEEEcCC-CccCccCHHH-hhCccCCcEEECCCCC-CCCcChhhc-ccCC-CcCEEECCCCc-CCcc-ChhHhCcc
Confidence 37888888888 4455432222 2347888888888874 443221111 2344 58888888884 3321 11235677
Q ss_pred CCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 499 KHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 499 ~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
++|+.|+|+++. ++. +...+ ..+++|+.|+|+++ .++.... .....+++|+.|+|++++
T Consensus 112 ~~L~~L~Ls~N~-l~~--lp~~~-~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTE--LPRGI-ERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTCCEEECCSSC-CCS--CCTTG-GGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred hhhCeEeccCCc-ccc--cCccc-ccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 888888887775 442 11111 23477888888775 4543221 223356778888887743
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=7.8e-08 Score=107.72 Aligned_cols=180 Identities=18% Similarity=0.139 Sum_probs=115.1
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCC-----------hhhHHHHHhcCCCCcEEe-cCCC
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRIS-----------DVGFKALVTSAPALRSIN-LSQC 456 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~Lt-----------D~~l~~L~~~~p~L~~L~-Ls~C 456 (600)
++|+.|+|+++. ...++..+.+|++|+.|+++++..+. ..........+++|+.|+ ++.+
T Consensus 349 ~~L~~L~Ls~n~--------L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n 420 (567)
T 1dce_A 349 EQLFRCELSVEK--------STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 420 (567)
T ss_dssp TTSSSCCCCHHH--------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred ccceeccCChhh--------HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc
Confidence 678888887764 13456666777888888876542100 011222333466777777 4433
Q ss_pred CCCCc--------hhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCc
Q 007516 457 SLLSS--------TSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNM 528 (600)
Q Consensus 457 ~~Itd--------~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sL 528 (600)
.+.+ ..+..+. +..|+.|+|++|. ++. +.. +..+++|+.|+|+++. ++. +...+ ..+++|
T Consensus 421 -~~~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~-l~~--lp~~~-~~l~~L 488 (567)
T 1dce_A 421 -YLDDLRSKFLLENSVLKME---YADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNR-LRA--LPPAL-AALRCL 488 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---HTTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSC-CCC--CCGGG-GGCTTC
T ss_pred -ccchhhhhhhhcccccccC---ccCceEEEecCCC-CCC--CcC-ccccccCcEeecCccc-ccc--cchhh-hcCCCC
Confidence 1111 1122221 2359999999994 443 223 7889999999999987 552 22222 235899
Q ss_pred cEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChh
Q 007516 529 KELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 529 k~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+.|+|+++ .++. +.. ...+++|+.|+|+++ .++..........+++|+.|+|++|+++..
T Consensus 489 ~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 489 EVLQASDN-ALEN--VDG-VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CEEECCSS-CCCC--CGG-GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CEEECCCC-CCCC--Ccc-cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 99999996 6765 333 347999999999995 676543123344599999999999988754
No 128
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.06 E-value=6.5e-07 Score=87.44 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=72.9
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
+.++.|+|++ +.++.......+..+++|+.|+|++|. ++...-..+. .++ +|++|+|++|.. +.. ....+..++
T Consensus 32 ~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~-~l~-~L~~L~Ls~N~l-~~~-~~~~~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFE-GAS-GVNEILLTSNRL-ENV-QHKMFKGLE 105 (220)
T ss_dssp TTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTT-TCT-TCCEEECCSSCC-CCC-CGGGGTTCS
T ss_pred CCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhC-CCC-CCCEEECCCCcc-Ccc-CHhHhcCCc
Confidence 4578888887 455543222223457888888888874 5443222222 333 488888887753 221 123456777
Q ss_pred CCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 500 HLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 500 ~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
+|+.|+|+++. ++......+ ..+++|+.|+|+++ .++...... ...+++|+.|+|++++
T Consensus 106 ~L~~L~Ls~N~-l~~~~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 106 SLKTLMLRSNR-ITCVGNDSF--IGLSSVRLLSLYDN-QITTVAPGA-FDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCEEECTTSC-CCCBCTTSS--TTCTTCSEEECTTS-CCCCBCTTT-TTTCTTCCEEECCSCC
T ss_pred CCCEEECCCCc-CCeECHhHc--CCCccCCEEECCCC-cCCEECHHH-hcCCCCCCEEEecCcC
Confidence 78888877765 332111011 12367777777774 444321112 2256677777777643
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.05 E-value=1.1e-06 Score=92.31 Aligned_cols=166 Identities=15% Similarity=0.150 Sum_probs=88.4
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
...++.|+|+++. ++.-....+... +++|+.|+|+++.. ... . ...+..+++|+.|+|++ +.++.....
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~--l~~L~~L~L~~N~i--~~i-~----~~~~~~l~~L~~L~Ls~-N~l~~~~~~ 106 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRAEWTPTR--LTNLHSLLLSHNHL--NFI-S----SEAFVPVPNLRYLDLSS-NHLHTLDEF 106 (361)
T ss_dssp CTTCSEEECCSSC-CCEECTTSSSSC--CTTCCEEECCSSCC--CEE-C----TTTTTTCTTCCEEECCS-SCCCEECTT
T ss_pred CCCCCEEECCCCC-CCccChhhhhhc--ccccCEEECCCCcC--Ccc-C----hhhccCCCCCCEEECCC-CcCCcCCHH
Confidence 3456788888875 543211111112 37888888888762 110 0 12345678888888887 445543222
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhh--HHHHHhcCCCCCEEEccCCCCCChHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAML--ILPALRKLKHLEVLSVAGIETVTDEFV 517 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~--i~~~l~~l~~Le~L~Ls~c~~ltd~~l 517 (600)
.+..+++|+.|+|++|. ++......+. .++ +|+.|+|++|. ++... +...+..+++|+.|+|+++. ++....
T Consensus 107 -~~~~l~~L~~L~L~~N~-i~~~~~~~~~-~l~-~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~ 180 (361)
T 2xot_A 107 -LFSDLQALEVLLLYNNH-IVVVDRNAFE-DMA-QLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPL 180 (361)
T ss_dssp -TTTTCTTCCEEECCSSC-CCEECTTTTT-TCT-TCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCH
T ss_pred -HhCCCcCCCEEECCCCc-ccEECHHHhC-Ccc-cCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCH
Confidence 22357888888888874 4443222222 333 58888888875 32210 11112567788888887775 443222
Q ss_pred HHHHHhcCCC--ccEEEecCCCCCChHHH
Q 007516 518 RGFVYACGHN--MKELILTDCVKLTDFSL 544 (600)
Q Consensus 518 ~~Ll~~~~~s--Lk~L~Ls~C~~LtD~~L 544 (600)
..+. . ++. |+.|+|++++-.-|-.+
T Consensus 181 ~~~~-~-l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 181 TDLQ-K-LPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HHHH-H-SCHHHHTTEECCSSCEECCHHH
T ss_pred HHhh-h-ccHhhcceEEecCCCccCCcCc
Confidence 2221 1 133 46788877543334333
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.03 E-value=2.2e-06 Score=96.00 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=107.0
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
.+|+.|+|+++.. .. ++. .-+++|+.|+|++ +.++... ..+++|+.|+|++|. ++... .+
T Consensus 59 ~~L~~L~Ls~n~L--~~------lp~--~l~~~L~~L~Ls~-N~l~~ip-----~~l~~L~~L~Ls~N~-l~~ip--~l- 118 (571)
T 3cvr_A 59 NQFSELQLNRLNL--SS------LPD--NLPPQITVLEITQ-NALISLP-----ELPASLEYLDACDNR-LSTLP--EL- 118 (571)
T ss_dssp TTCSEEECCSSCC--SC------CCS--CCCTTCSEEECCS-SCCSCCC-----CCCTTCCEEECCSSC-CSCCC--CC-
T ss_pred CCccEEEeCCCCC--Cc------cCH--hHcCCCCEEECcC-CCCcccc-----cccCCCCEEEccCCC-CCCcc--hh-
Confidence 5999999999873 21 111 1247899999998 4566433 457999999999984 54421 12
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIA 548 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~ 548 (600)
+.+|++|+|++|. ++. +.. .+++|+.|+|+++. ++. +.. .+++|+.|+|++| .++. +..+
T Consensus 119 ---~~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp~----~l~~L~~L~Ls~N-~L~~--lp~l- 178 (571)
T 3cvr_A 119 ---PASLKHLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTM--LPE----LPTSLEVLSVRNN-QLTF--LPEL- 178 (571)
T ss_dssp ---CTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSC--CCC----CCTTCCEEECCSS-CCSC--CCCC-
T ss_pred ---hcCCCEEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCc--CCC----cCCCcCEEECCCC-CCCC--cchh-
Confidence 2369999999995 433 222 68999999999987 543 111 3589999999997 5654 2222
Q ss_pred hcCCCccEEeecCCCCCChHHH--HHHHhcCCCccEEEeeCCCCCh
Q 007516 549 ETCPRLCTLDLSNLYKLTDFGI--GYLANGCQAIQTLKLCRNAFRF 592 (600)
Q Consensus 549 ~~cp~L~~LdLs~C~~lTd~~l--~~L~~~c~~Lk~L~Ls~c~isD 592 (600)
.++|+.|+|++| .|+.... ..|...++.|+.|+|++|.|+.
T Consensus 179 --~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 179 --PESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp --CTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSSCCCC
T ss_pred --hCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCCccee
Confidence 289999999996 5663111 0111122334999999998874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.02 E-value=7.9e-07 Score=85.03 Aligned_cols=133 Identities=15% Similarity=0.093 Sum_probs=73.4
Q ss_pred cCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHh
Q 007516 444 SAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA 523 (600)
Q Consensus 444 ~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~ 523 (600)
.+++|+.|+|++|. ++... .+. .++ +|+.|++++|. ++. +...+..+++|+.|+++++. ++. +..+ ..
T Consensus 46 ~l~~L~~L~ls~n~-l~~l~--~~~-~l~-~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~-l~~--l~~~-~~ 113 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEKIS--SLS-GME-NLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQ-IAS--LSGI-EK 113 (198)
T ss_dssp HTTTCSEEECSEEE-ESCCC--CHH-HHT-TCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEE-CCC--HHHH-HH
T ss_pred cCCCCCEEECCCCC-Ccccc--ccc-cCC-CCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCc-CCc--CCcc-cc
Confidence 46777777777763 33321 222 333 47777777774 332 22344455677777777775 443 2222 12
Q ss_pred cCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChH---------HHHHHHhcCCCccEEEeeCCCCChh
Q 007516 524 CGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDF---------GIGYLANGCQAIQTLKLCRNAFRFV 593 (600)
Q Consensus 524 ~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~---------~l~~L~~~c~~Lk~L~Ls~c~isD~ 593 (600)
+++|++|+|++| .+++.........+++|+.|++++| .++.. ....+...+++|+.|+ ++++++.
T Consensus 114 -l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 114 -LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp -HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred -CCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 267777777775 4555332222336777788887775 33322 1122344577788776 5655543
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.96 E-value=1.9e-06 Score=84.04 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=92.4
Q ss_pred cEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHh
Q 007516 364 TEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVT 443 (600)
Q Consensus 364 ~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~ 443 (600)
+.|++++.. ++. +.... .+.++.|+|+++.. ..... ...+..+++|+.|+|++ +.++...... +.
T Consensus 14 ~~l~~s~n~-l~~-----iP~~~-~~~~~~L~L~~N~l--~~~~~----~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~ 78 (220)
T 2v70_A 14 TTVDCSNQK-LNK-----IPEHI-PQYTAELRLNNNEF--TVLEA----TGIFKKLPQLRKINFSN-NKITDIEEGA-FE 78 (220)
T ss_dssp TEEECCSSC-CSS-----CCSCC-CTTCSEEECCSSCC--CEECC----CCCGGGCTTCCEEECCS-SCCCEECTTT-TT
T ss_pred CEeEeCCCC-ccc-----CccCC-CCCCCEEEcCCCcC--CccCc----hhhhccCCCCCEEECCC-CcCCEECHHH-hC
Confidence 357776654 332 22221 25788999998863 21100 01245788999999998 4565433222 23
Q ss_pred cCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHh
Q 007516 444 SAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYA 523 (600)
Q Consensus 444 ~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~ 523 (600)
.+++|+.|+|++|. ++......+ ..++ +|++|+|++|. +... ....+..+++|+.|+|+++. ++.... ..+ .
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~-~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~-~ 150 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQHKMF-KGLE-SLKTLMLRSNR-ITCV-GNDSFIGLSSVRLLSLYDNQ-ITTVAP-GAF-D 150 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCCGGGG-TTCS-SCCEEECTTSC-CCCB-CTTSSTTCTTCSEEECTTSC-CCCBCT-TTT-T
T ss_pred CCCCCCEEECCCCc-cCccCHhHh-cCCc-CCCEEECCCCc-CCeE-CHhHcCCCccCCEEECCCCc-CCEECH-HHh-c
Confidence 57899999999884 444332222 2444 59999999885 3221 12346688899999998876 443211 111 2
Q ss_pred cCCCccEEEecCCCCCCh
Q 007516 524 CGHNMKELILTDCVKLTD 541 (600)
Q Consensus 524 ~~~sLk~L~Ls~C~~LtD 541 (600)
.+++|+.|+|+++.-..+
T Consensus 151 ~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCTTCCEEECCSCCEECS
T ss_pred CCCCCCEEEecCcCCcCC
Confidence 347899999988643333
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.94 E-value=2.5e-06 Score=83.67 Aligned_cols=130 Identities=17% Similarity=0.219 Sum_probs=58.9
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|+|+++.. .. .....+..+++|+.|+|++ +.++..... .+..+++|+.|+|++|. ++...-..+
T Consensus 40 ~~L~~L~Ls~n~i--~~-----~~~~~~~~l~~L~~L~L~~-N~l~~i~~~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~- 108 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TK-----LEPGVFDSLINLKELYLGS-NQLGALPVG-VFDSLTQLTVLDLGTNQ-LTVLPSAVF- 108 (229)
T ss_dssp TTCSEEECCSSCC--CC-----CCTTTTTTCTTCCEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-
T ss_pred CCCCEEEcCCCcc--Cc-----cCHHHhhCccCCcEEECCC-CCCCCcChh-hcccCCCcCEEECCCCc-CCccChhHh-
Confidence 4566666666542 11 0011234556666666665 333322111 12335666666666652 332211111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCC
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDC 536 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C 536 (600)
..++ +|+.|+|++|. ++. +...+..+++|+.|+|+++. ++.... ..+ ..+++|+.|+|+++
T Consensus 109 ~~l~-~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 109 DRLV-HLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQNQ-LKSIPH-GAF-DRLSSLTHAYLFGN 169 (229)
T ss_dssp TTCT-TCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSSC-CCCCCT-TTT-TTCTTCCEEECTTS
T ss_pred Ccch-hhCeEeccCCc-ccc--cCcccccCCCCCEEECCCCc-CCccCH-HHH-hCCCCCCEEEeeCC
Confidence 1233 36666666663 221 22334566666666666654 332110 111 12356666666664
No 134
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.88 E-value=3.3e-06 Score=82.43 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=88.8
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILA 468 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~ 468 (600)
++|+.|+|+++.. .. + ....+..+++|+.|+|++ +.++......+ ..+++|+.|+|++|. ++...-..+
T Consensus 32 ~~l~~L~l~~n~i--~~-i----~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~f- 100 (220)
T 2v9t_B 32 ETITEIRLEQNTI--KV-I----PPGAFSPYKKLRRIDLSN-NQISELAPDAF-QGLRSLNSLVLYGNK-ITELPKSLF- 100 (220)
T ss_dssp TTCCEEECCSSCC--CE-E----CTTSSTTCTTCCEEECCS-SCCCEECTTTT-TTCSSCCEEECCSSC-CCCCCTTTT-
T ss_pred cCCCEEECCCCcC--CC-c----CHhHhhCCCCCCEEECCC-CcCCCcCHHHh-hCCcCCCEEECCCCc-CCccCHhHc-
Confidence 6899999998863 21 1 112346788999999998 45654332222 357899999999984 443221111
Q ss_pred hhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHH
Q 007516 469 DKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVI 547 (600)
Q Consensus 469 ~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L 547 (600)
..++ +|+.|+|++|. ++.. ....+..+++|+.|+|+++. ++.... ..+ ..+++|+.|+|+++.-..|-.+..+
T Consensus 101 ~~l~-~L~~L~L~~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~-~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 101 EGLF-SLQLLLLNANK-INCL-RVDAFQDLHNLNLLSLYDNK-LQTIAK-GTF-SPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp TTCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CSCCCT-TTT-TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred cCCC-CCCEEECCCCC-CCEe-CHHHcCCCCCCCEEECCCCc-CCEECH-HHH-hCCCCCCEEEeCCCCcCCCCccHHH
Confidence 2344 59999999985 3321 12456788999999999886 432211 111 2247899999998654344333333
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.85 E-value=2.8e-07 Score=96.24 Aligned_cols=204 Identities=16% Similarity=0.161 Sum_probs=120.3
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
..++++|+|+++. |+.-. ...+.. +++|++|+|++|... ..+. ...+.++++|.++.+.+++.++.....
T Consensus 29 ~~~l~~L~Ls~N~-i~~i~-~~~f~~--l~~L~~L~Ls~N~i~--~~i~----~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 29 PRNAIELRFVLTK-LRVIQ-KGAFSG--FGDLEKIEISQNDVL--EVIE----ADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp CTTCSEEEEESCC-CSEEC-TTSSTT--CTTCCEEEEECCTTC--CEEC----TTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCCCEEEccCCc-CCCcC-HHHHcC--CCCCCEEECcCCCCC--CccC----hhHhhcchhhhhhhcccCCcccccCch
Confidence 3578999999985 55210 011233 489999999998631 1010 113457788887666655666543322
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcC-CCCCEEEccCCCCCChHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKL-KHLEVLSVAGIETVTDEFVR 518 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l-~~Le~L~Ls~c~~ltd~~l~ 518 (600)
.+..+++|+.|++++|. ++...-.... ... .+..|++.++..+..... ..+..+ ..|+.|+++++. ++.-.-
T Consensus 99 -~f~~l~~L~~L~l~~n~-l~~~~~~~~~-~~~-~l~~l~l~~~~~i~~l~~-~~f~~~~~~l~~L~L~~N~-i~~i~~- 171 (350)
T 4ay9_X 99 -AFQNLPNLQYLLISNTG-IKHLPDVHKI-HSL-QKVLLDIQDNINIHTIER-NSFVGLSFESVILWLNKNG-IQEIHN- 171 (350)
T ss_dssp -SBCCCTTCCEEEEEEEC-CSSCCCCTTC-CBS-SCEEEEEESCTTCCEECT-TSSTTSBSSCEEEECCSSC-CCEECT-
T ss_pred -hhhhccccccccccccc-cccCCchhhc-ccc-hhhhhhhccccccccccc-cchhhcchhhhhhcccccc-ccCCCh-
Confidence 23458999999999884 3322111111 112 478888887765543211 122333 468899998876 442111
Q ss_pred HHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC
Q 007516 519 GFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c 588 (600)
-+ ..+.+|++|++.++..++...-. ....+++|+.|+|+++ .|+.-. ...+.+|+.|.+.+|
T Consensus 172 -~~-f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 172 -SA-FNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHSLP----SYGLENLKKLRARST 233 (350)
T ss_dssp -TS-STTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTC
T ss_pred -hh-ccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCccC----hhhhccchHhhhccC
Confidence 01 12367999999887777643221 2347889999999985 566321 123567888877665
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=2.5e-06 Score=88.13 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=55.6
Q ss_pred hcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCcc-EEeecCCCCCChHHHHHHH
Q 007516 496 RKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLC-TLDLSNLYKLTDFGIGYLA 574 (600)
Q Consensus 496 ~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~-~LdLs~C~~lTd~~l~~L~ 574 (600)
..|++|+.|+|.++. ++.-. ..+...+++|++|+|.+. ++.-+-.+ +..|++|+ .|+|.+ .++.-+- ...
T Consensus 223 ~~~~~L~~l~L~~n~-i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~-~aF 293 (329)
T 3sb4_A 223 DYMPNLVSLDISKTN-ATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRV-FSNCGRLAGTLELPA--SVTAIEF-GAF 293 (329)
T ss_dssp HHCTTCCEEECTTBC-CCEEC--TTTTTTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEEECT--TCCEECT-TTT
T ss_pred HhcCCCeEEECCCCC-cceec--HhhhhCCCCCCEEECCcc--cceehHHH-hhCChhccEEEEEcc--cceEEch-hhh
Confidence 358889999988753 32211 111233478999988763 44322222 34788898 999986 4543332 233
Q ss_pred hcCCCccEEEeeCCCCChhh
Q 007516 575 NGCQAIQTLKLCRNAFRFVF 594 (600)
Q Consensus 575 ~~c~~Lk~L~Ls~c~isD~~ 594 (600)
.+|++|+.|+++++.++.-.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TTCTTEEEEEECSSCCCEEC
T ss_pred hCCccCCEEEeCCCccCccc
Confidence 46999999999888765433
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.80 E-value=1.9e-06 Score=82.27 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=68.2
Q ss_pred CEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCC
Q 007516 423 TTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLE 502 (600)
Q Consensus 423 ~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le 502 (600)
+.|++++ ..++.... ...++|+.|+|++|. ++......+...++ +|++|+|++|. ++.. ....+..+++|+
T Consensus 11 ~~l~~s~-~~l~~ip~----~~~~~l~~L~l~~n~-i~~~~~~~~~~~l~-~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPR----DIPLHTTELLLNDNE-LGRISSDGLFGRLP-HLVKLELKRNQ-LTGI-EPNAFEGASHIQ 81 (192)
T ss_dssp TEEECTT-SCCSSCCS----CCCTTCSEEECCSCC-CCSBCCSCSGGGCT-TCCEEECCSSC-CCCB-CTTTTTTCTTCC
T ss_pred CEEEcCC-CCcCcCcc----CCCCCCCEEECCCCc-CCccCCccccccCC-CCCEEECCCCC-CCCc-CHhHcCCcccCC
Confidence 6777776 34433211 112478888888873 44332211122344 48888888874 3221 123466777888
Q ss_pred EEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 503 VLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 503 ~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
.|+|+++. ++...... + ..+++|++|+|+++ .++...... ...+++|+.|+|++++
T Consensus 82 ~L~Ls~N~-l~~~~~~~-~-~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 82 ELQLGENK-IKEISNKM-F-LGLHQLKTLNLYDN-QISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp EEECCSCC-CCEECSSS-S-TTCTTCCEEECCSS-CCCEECTTS-STTCTTCCEEECTTCC
T ss_pred EEECCCCc-CCccCHHH-h-cCCCCCCEEECCCC-cCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 88887775 44321100 1 12367777777774 454321111 2256677777777643
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.78 E-value=4.7e-07 Score=94.56 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=115.7
Q ss_pred CCCCcEEEecCCCCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 360 SGSPTEIRLRDCSWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 360 ~~~L~~L~L~~C~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
.+.+++|+|+++..++.-. ...+.. +++|+++.+..+.++ .. + ....+..+++|+.|+++++ .++.....
T Consensus 53 l~~L~~L~Ls~N~i~~~i~-~~~f~~--L~~l~~~l~~~~N~l-~~-l----~~~~f~~l~~L~~L~l~~n-~l~~~~~~ 122 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIE-ADVFSN--LPKLHEIRIEKANNL-LY-I----NPEAFQNLPNLQYLLISNT-GIKHLPDV 122 (350)
T ss_dssp CTTCCEEEEECCTTCCEEC-TTSBCS--CTTCCEEEEEEETTC-CE-E----CTTSBCCCTTCCEEEEEEE-CCSSCCCC
T ss_pred CCCCCEEECcCCCCCCccC-hhHhhc--chhhhhhhcccCCcc-cc-c----Cchhhhhcccccccccccc-ccccCCch
Confidence 4678999999986332100 011222 256666554444331 11 0 1123467899999999884 44332211
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHH
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRG 519 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~ 519 (600)
.. ....++..|++..+..++......+. .++..|+.|+|++|. ++. +...+....+|+.|++.++..++.-.- .
T Consensus 123 ~~-~~~~~l~~l~l~~~~~i~~l~~~~f~-~~~~~l~~L~L~~N~-i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~-~ 196 (350)
T 4ay9_X 123 HK-IHSLQKVLLDIQDNINIHTIERNSFV-GLSFESVILWLNKNG-IQE--IHNSAFNGTQLDELNLSDNNNLEELPN-D 196 (350)
T ss_dssp TT-CCBSSCEEEEEESCTTCCEECTTSST-TSBSSCEEEECCSSC-CCE--ECTTSSTTEEEEEEECTTCTTCCCCCT-T
T ss_pred hh-cccchhhhhhhccccccccccccchh-hcchhhhhhcccccc-ccC--CChhhccccchhHHhhccCCcccCCCH-H
Confidence 11 12456788888877666554333332 223358899999885 332 222333556789999987655543211 1
Q ss_pred HHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeC
Q 007516 520 FVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCR 587 (600)
Q Consensus 520 Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~ 587 (600)
.+ ..+++|+.|+|+++ .|+... ...+.+|+.|.+.+|.+++.- .. ...+++|+.+++.+
T Consensus 197 ~f-~~l~~L~~LdLs~N-~l~~lp----~~~~~~L~~L~~l~~~~l~~l--P~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 197 VF-HGASGPVILDISRT-RIHSLP----SYGLENLKKLRARSTYNLKKL--PT-LEKLVALMEASLTY 255 (350)
T ss_dssp TT-TTEECCSEEECTTS-CCCCCC----SSSCTTCCEEECTTCTTCCCC--CC-TTTCCSCCEEECSC
T ss_pred Hh-ccCcccchhhcCCC-CcCccC----hhhhccchHhhhccCCCcCcC--CC-chhCcChhhCcCCC
Confidence 11 22378999999986 565321 123567888888887766532 22 23578899998854
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=1.6e-06 Score=99.74 Aligned_cols=10 Identities=0% Similarity=0.132 Sum_probs=0.5
Q ss_pred CccEEEeeCC
Q 007516 579 AIQTLKLCRN 588 (600)
Q Consensus 579 ~Lk~L~Ls~c 588 (600)
.|+.|++++|
T Consensus 360 ~l~~l~l~~n 369 (727)
T 4b8c_D 360 ERRFIEINTD 369 (727)
T ss_dssp C---------
T ss_pred ccceeEeecc
Confidence 5777777766
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.70 E-value=8.2e-06 Score=78.01 Aligned_cols=125 Identities=9% Similarity=0.045 Sum_probs=61.9
Q ss_pred CEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCC
Q 007516 423 TTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLE 502 (600)
Q Consensus 423 ~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le 502 (600)
+.+++++ ..++...- ...++|+.|+|++|. ++... ..+ ..++ +|+.|+|++|. ++.. ....+..+++|+
T Consensus 13 ~~l~~~~-~~l~~ip~----~~~~~l~~L~L~~n~-i~~ip-~~~-~~l~-~L~~L~Ls~N~-i~~i-~~~~f~~l~~L~ 81 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPK----GIPRDVTELYLDGNQ-FTLVP-KEL-SNYK-HLTLIDLSNNR-ISTL-SNQSFSNMTQLL 81 (193)
T ss_dssp TEEECTT-SCCSSCCS----CCCTTCCEEECCSSC-CCSCC-GGG-GGCT-TCCEEECCSSC-CCCC-CTTTTTTCTTCC
T ss_pred CEEEcCC-CCCCcCCC----CCCCCCCEEECCCCc-CchhH-HHh-hccc-CCCEEECCCCc-CCEe-CHhHccCCCCCC
Confidence 4566665 33432210 113567778877763 44322 122 2333 47777777774 3221 112356677777
Q ss_pred EEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 503 VLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 503 ~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
.|+|+++. ++......+ ..+++|+.|+|+++ .++.... .....+++|+.|+|++.+
T Consensus 82 ~L~Ls~N~-l~~i~~~~f--~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 82 TLILSYNR-LRCIPPRTF--DGLKSLRLLSLHGN-DISVVPE-GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSC-CCBCCTTTT--TTCTTCCEEECCSS-CCCBCCT-TTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-cCEeCHHHh--CCCCCCCEEECCCC-CCCeeCh-hhhhcCccccEEEeCCCC
Confidence 77777665 332111011 12366777777764 4442111 112245666777766643
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.67 E-value=8.1e-06 Score=76.27 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=66.2
Q ss_pred CCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCC
Q 007516 422 LTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHL 501 (600)
Q Consensus 422 L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~L 501 (600)
.+.+++++ ..++.... ...++|+.|+|++|. ++......+ ..++ +|++|+|++|. ++.. ....+..+++|
T Consensus 9 ~~~l~~~~-~~l~~~p~----~~~~~l~~L~l~~n~-l~~~~~~~~-~~l~-~L~~L~l~~n~-l~~~-~~~~~~~l~~L 78 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPT----GIPSSATRLELESNK-LQSLPHGVF-DKLT-QLTKLSLSQNQ-IQSL-PDGVFDKLTKL 78 (177)
T ss_dssp TTEEECCS-SCCSSCCT----TCCTTCSEEECCSSC-CCCCCTTTT-TTCT-TCSEEECCSSC-CCCC-CTTTTTTCTTC
T ss_pred CCEEEecC-CCCccCCC----CCCCCCcEEEeCCCc-ccEeCHHHh-cCcc-cccEEECCCCc-ceEe-ChhHccCCCcc
Confidence 46677766 34443221 123678888888774 443221111 2333 48888888774 3321 11234567777
Q ss_pred CEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCC
Q 007516 502 EVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLY 563 (600)
Q Consensus 502 e~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~ 563 (600)
+.|+|+++. ++.... ..+ ..+++|+.|+|+++ .++... ..+...+++|+.|+|++++
T Consensus 79 ~~L~l~~N~-l~~~~~-~~~-~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 79 TILYLHENK-LQSLPN-GVF-DKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CEEECCSSC-CCCCCT-TTT-TTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCC-ccccCH-HHh-hCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence 777777765 432110 111 22367777777775 444211 1122356677777777653
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.49 E-value=7.3e-06 Score=94.34 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=85.9
Q ss_pred HhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHH
Q 007516 442 VTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFV 521 (600)
Q Consensus 442 ~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll 521 (600)
+..++.|+.|+|++|. +....- .+. .++ +|++|+|++|. ++ .+...+..+++|+.|+|+++. ++. +...+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~-~~~-~l~-~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~ 289 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISA-NIF-KYD-FLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAEL 289 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCG-GGG-GCC-SCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSG
T ss_pred hccCCCCcEEECCCCC-CCCCCh-hhc-CCC-CCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhh
Confidence 4457899999999985 433211 111 444 59999999985 44 244557889999999999987 552 22222
Q ss_pred HhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCChhhh
Q 007516 522 YACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFRFVFH 595 (600)
Q Consensus 522 ~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~isD~~i 595 (600)
. .+++|++|+|++| .++. +..-...+++|+.|+|+++ .++......+......+..|+|++|.++....
T Consensus 290 ~-~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 290 G-SCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGN-PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp G-GGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTS-CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred c-CCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCC-ccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 2 3488999999986 5553 2222347889999999985 56654333332211122345677776665443
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.22 E-value=0.00018 Score=68.55 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=16.0
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
..+++|+.|+|++ +.|+...... +..+++|+.|+|++|
T Consensus 51 ~~l~~L~~L~Ls~-N~i~~i~~~~-f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 51 SNYKHLTLIDLSN-NRISTLSNQS-FSNMTQLLTLILSYN 88 (193)
T ss_dssp GGCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSS
T ss_pred hcccCCCEEECCC-CcCCEeCHhH-ccCCCCCCEEECCCC
Confidence 3445555555554 2333221111 123455555555554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=5.6e-05 Score=77.89 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=70.1
Q ss_pred chhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCC-CCCChHHHHHHHHhcCCCcc-EEEecCCCC
Q 007516 461 STSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGI-ETVTDEFVRGFVYACGHNMK-ELILTDCVK 538 (600)
Q Consensus 461 d~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c-~~ltd~~l~~Ll~~~~~sLk-~L~Ls~C~~ 538 (600)
...+..+...|+ +|+.|+|.++. ++... ...+..|++|+.|+|... ..|.+. +...+++|+ .|+|.+ .
T Consensus 215 ~~~~~~l~~~~~-~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~ni~~I~~~-----aF~~~~~L~~~l~l~~--~ 284 (329)
T 3sb4_A 215 NADFKLIRDYMP-NLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHNLKTIGQR-----VFSNCGRLAGTLELPA--S 284 (329)
T ss_dssp HHHHHHHHHHCT-TCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTTCCEECTT-----TTTTCTTCCEEEEECT--T
T ss_pred HHHHHHHHHhcC-CCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcccceehHH-----HhhCChhccEEEEEcc--c
Confidence 334444444565 59999999864 32211 135789999999999764 222222 123358899 999987 4
Q ss_pred CChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEe
Q 007516 539 LTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKL 585 (600)
Q Consensus 539 LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~L 585 (600)
++.-+-.+ +..|++|+.|++.+ ..++.-+-. ...+|++|+.|..
T Consensus 285 l~~I~~~a-F~~c~~L~~l~l~~-n~i~~I~~~-aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 285 VTAIEFGA-FMGCDNLRYVLATG-DKITTLGDE-LFGNGVPSKLIYK 328 (329)
T ss_dssp CCEECTTT-TTTCTTEEEEEECS-SCCCEECTT-TTCTTCCCCEEEC
T ss_pred ceEEchhh-hhCCccCCEEEeCC-CccCccchh-hhcCCcchhhhcc
Confidence 44322222 34899999999976 356543322 3446999998863
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.15 E-value=0.00018 Score=66.92 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=15.9
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
..+++|+.|+|++ +.++..... .+..+++|+.|+|++|
T Consensus 49 ~~l~~L~~L~l~~-n~l~~~~~~-~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 49 DKLTQLTKLSLSQ-NQIQSLPDG-VFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTCTTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred cCcccccEEECCC-CcceEeChh-HccCCCccCEEECCCC
Confidence 3445555555554 233321111 1123455555555554
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.13 E-value=0.00011 Score=69.71 Aligned_cols=37 Identities=19% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 418 SLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 418 ~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
.+++|+.|+|++ +.++......+ ..+++|+.|+|++|
T Consensus 52 ~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 52 RLPHLVKLELKR-NQLTGIEPNAF-EGASHIQELQLGEN 88 (192)
T ss_dssp GCTTCCEEECCS-SCCCCBCTTTT-TTCTTCCEEECCSC
T ss_pred cCCCCCEEECCC-CCCCCcCHhHc-CCcccCCEEECCCC
Confidence 445555555554 23332211111 22445555555554
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.65 E-value=0.00026 Score=75.63 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=104.8
Q ss_pred CCCcEEEecCC-CCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHH
Q 007516 361 GSPTEIRLRDC-SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFK 439 (600)
Q Consensus 361 ~~L~~L~L~~C-~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~ 439 (600)
..++++.|.+. ..|.+ ..+..| ++|+.++|..+.. .. +... .-.+.+|+.+.|... ++..+-.
T Consensus 157 ~~L~~i~lp~~l~~I~~----~aF~~c--~~L~~l~l~~n~l--~~-I~~~-----aF~~~~L~~l~lp~~--l~~I~~~ 220 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKE----DIFYYC--YNLKKADLSKTKI--TK-LPAS-----TFVYAGIEEVLLPVT--LKEIGSQ 220 (401)
T ss_dssp CCCCEEECCTTCCEECS----STTTTC--TTCCEEECTTSCC--SE-ECTT-----TTTTCCCSEEECCTT--CCEECTT
T ss_pred CCceEEEeCCCccEehH----HHhhCc--ccCCeeecCCCcc--eE-echh-----hEeecccCEEEeCCc--hheehhh
Confidence 34666666641 11222 124556 7888888876542 10 1111 112578888888642 3322222
Q ss_pred HHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc-CchhhhHHHHHhcCCCCCEEEccCCCC-------
Q 007516 440 ALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ-SLNAMLILPALRKLKHLEVLSVAGIET------- 511 (600)
Q Consensus 440 ~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~-~l~d~~i~~~l~~l~~Le~L~Ls~c~~------- 511 (600)
+ +.+|++|+.|.|..+ ++..+-..+.. .+|+.+.|.+.- .+.. ..+..|++|+.+.+.+...
T Consensus 221 a-F~~~~~L~~l~l~~~--l~~I~~~aF~~---~~L~~i~lp~~i~~I~~----~aF~~c~~L~~l~l~~~~~~~~~~~~ 290 (401)
T 4fdw_A 221 A-FLKTSQLKTIEIPEN--VSTIGQEAFRE---SGITTVKLPNGVTNIAS----RAFYYCPELAEVTTYGSTFNDDPEAM 290 (401)
T ss_dssp T-TTTCTTCCCEECCTT--CCEECTTTTTT---CCCSEEEEETTCCEECT----TTTTTCTTCCEEEEESSCCCCCTTCE
T ss_pred H-hhCCCCCCEEecCCC--ccCcccccccc---CCccEEEeCCCccEECh----hHhhCCCCCCEEEeCCccccCCcccE
Confidence 2 235788888888763 44433333332 258888885432 1222 3567888888888866542
Q ss_pred CChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCCC
Q 007516 512 VTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAFR 591 (600)
Q Consensus 512 ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~is 591 (600)
+.+. ....|++|+.|.|.. .++.-+-.+ ...|++|+.|.|.. .++.-+-.. ..+| +|+.|.+.+|.+.
T Consensus 291 I~~~-----aF~~c~~L~~l~l~~--~i~~I~~~a-F~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 291 IHPY-----CLEGCPKLARFEIPE--SIRILGQGL-LGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECTT-----TTTTCTTCCEECCCT--TCCEECTTT-TTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCSSCC
T ss_pred ECHH-----HhhCCccCCeEEeCC--ceEEEhhhh-hcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCCCCc
Confidence 2222 122347888888864 243322222 23678888888864 344332222 3357 8888888877543
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.56 E-value=0.005 Score=62.16 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCCCEEEcCCcccCChh-hHHHHHhcCCCCcEEecCCCCCCCch-hHHHHHhhccccceEEEccCccCc
Q 007516 409 LSTLASSLNSLPSLTTLSICGACRISDV-GFKALVTSAPALRSINLSQCSLLSST-SVDILADKLGSFIQELYINDCQSL 486 (600)
Q Consensus 409 ~~~L~~~~~~l~~L~~L~Ls~c~~LtD~-~l~~L~~~~p~L~~L~Ls~C~~Itd~-~L~~L~~~~~s~L~~L~Ls~c~~l 486 (600)
...+.....++++|+.|+|++ +.|+.. ++..+...+++|+.|+|++|. ++.. .+..+. .+ +|++|+|++|+-.
T Consensus 159 ~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~l--~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 159 AATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIK-GL--KLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGT-TS--CCSEEECTTSTTG
T ss_pred HHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcc-cC--CcceEEccCCcCc
Confidence 334444446678888888887 455542 233344567888888888774 4442 333332 12 4777777777532
Q ss_pred hh-----hhHHHHHhcCCCCCEEE
Q 007516 487 NA-----MLILPALRKLKHLEVLS 505 (600)
Q Consensus 487 ~d-----~~i~~~l~~l~~Le~L~ 505 (600)
.. .-....+..+|+|+.|+
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCcchhHHHHHHHHCcccCeEC
Confidence 20 11123455666666665
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.34 E-value=0.00073 Score=62.88 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=36.5
Q ss_pred CCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCC
Q 007516 422 LTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHL 501 (600)
Q Consensus 422 L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~L 501 (600)
.+.|++++ ..++.... ...++|+.|+|++|. ++...-..+. .++ +|+.|+|++|. ++.. ....+..+++|
T Consensus 11 ~~~l~~s~-n~l~~ip~----~~~~~l~~L~L~~N~-i~~~~~~~~~-~l~-~L~~L~Ls~N~-l~~l-~~~~f~~l~~L 80 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPT----GIPTTTQVLYLYDNQ-ITKLEPGVFD-RLT-QLTRLDLDNNQ-LTVL-PAGVFDKLTQL 80 (170)
T ss_dssp TTEEECTT-SCCSSCCS----CCCTTCSEEECCSSC-CCCCCTTTTT-TCT-TCSEEECCSSC-CCCC-CTTTTTTCTTC
T ss_pred CCEEEeCC-CCcCccCc----cCCCCCcEEEcCCCc-CCccChhhhc-Ccc-cCCEEECCCCC-cCcc-ChhhccCCCCC
Confidence 46666666 33432110 012566777776663 3322111111 222 46666666663 2211 11223556666
Q ss_pred CEEEccCCC
Q 007516 502 EVLSVAGIE 510 (600)
Q Consensus 502 e~L~Ls~c~ 510 (600)
+.|+|+++.
T Consensus 81 ~~L~L~~N~ 89 (170)
T 3g39_A 81 TQLSLNDNQ 89 (170)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 666666554
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.25 E-value=0.0092 Score=60.19 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=57.5
Q ss_pred HHHHHhcCCCCcEEecCCCCCCCc-hhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCCh--
Q 007516 438 FKALVTSAPALRSINLSQCSLLSS-TSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTD-- 514 (600)
Q Consensus 438 l~~L~~~~p~L~~L~Ls~C~~Itd-~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd-- 514 (600)
+..+...+|+|+.|+|++|. ++. .++..+...++ +|+.|+|++|. +....-...+..+ +|+.|+|.++. ++.
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~-~L~~L~Ls~N~-i~~~~~l~~l~~l-~L~~L~L~~Np-l~~~~ 236 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNR-LYRLDDMSSIVQKAP-NLKILNLSGNE-LKSERELDKIKGL-KLEELWLDGNS-LCDTF 236 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSC-CCCCGGGTTHHHHST-TCCEEECTTSC-CCSGGGGGGGTTS-CCSEEECTTST-TGGGC
T ss_pred HHHHHhhCCCCCEEECCCCC-CCCCccchhHHhhCC-CCCEEECCCCc-cCCchhhhhcccC-CcceEEccCCc-Ccccc
Confidence 34444678999999999985 444 34544555666 49999999885 3332112233444 89999998887 543
Q ss_pred ---HHHHHHHHhcCCCccEEEec
Q 007516 515 ---EFVRGFVYACGHNMKELILT 534 (600)
Q Consensus 515 ---~~l~~Ll~~~~~sLk~L~Ls 534 (600)
......+...+|+|+.||-.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 12222233445899988643
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.85 E-value=0.0035 Score=66.75 Aligned_cols=188 Identities=12% Similarity=0.233 Sum_probs=110.8
Q ss_pred CCcEEEecCC-CCCCHHHHHHHHhhCCCCCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCcccCChhhHHH
Q 007516 362 SPTEIRLRDC-SWLTEQEFTKAFVSCDTKNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGACRISDVGFKA 440 (600)
Q Consensus 362 ~L~~L~L~~C-~~Ltd~~L~~L~~~c~l~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c~~LtD~~l~~ 440 (600)
.++.+.|... ..|.+. .+..| +|+.+.|...-..+.+ .....|++|+.++|.+ +.++..+-..
T Consensus 136 ~L~~i~l~~~i~~I~~~----aF~~~---~L~~i~lp~~l~~I~~--------~aF~~c~~L~~l~l~~-n~l~~I~~~a 199 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDM----AFFNS---TVQEIVFPSTLEQLKE--------DIFYYCYNLKKADLSK-TKITKLPAST 199 (401)
T ss_dssp CCSEEECCTTCCEECTT----TTTTC---CCCEEECCTTCCEECS--------STTTTCTTCCEEECTT-SCCSEECTTT
T ss_pred CccEEEeCCCccEECHH----hcCCC---CceEEEeCCCccEehH--------HHhhCcccCCeeecCC-CcceEechhh
Confidence 4566776642 223332 23345 6999998763221111 1346799999999986 3344333222
Q ss_pred HHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc-CchhhhHHHHHhcCCCCCEEEccCC-CCCChHHHH
Q 007516 441 LVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ-SLNAMLILPALRKLKHLEVLSVAGI-ETVTDEFVR 518 (600)
Q Consensus 441 L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~-~l~d~~i~~~l~~l~~Le~L~Ls~c-~~ltd~~l~ 518 (600)
+. +.+|+.|.|..+ ++..+-..+. .|+ +|+.|.|..+- .+... .+.. .+|+.+.|... ..|.+.
T Consensus 200 F~--~~~L~~l~lp~~--l~~I~~~aF~-~~~-~L~~l~l~~~l~~I~~~----aF~~-~~L~~i~lp~~i~~I~~~--- 265 (401)
T 4fdw_A 200 FV--YAGIEEVLLPVT--LKEIGSQAFL-KTS-QLKTIEIPENVSTIGQE----AFRE-SGITTVKLPNGVTNIASR--- 265 (401)
T ss_dssp TT--TCCCSEEECCTT--CCEECTTTTT-TCT-TCCCEECCTTCCEECTT----TTTT-CCCSEEEEETTCCEECTT---
T ss_pred Ee--ecccCEEEeCCc--hheehhhHhh-CCC-CCCEEecCCCccCcccc----cccc-CCccEEEeCCCccEEChh---
Confidence 22 689999999754 4443333333 455 59999997642 22322 2333 68999998542 223222
Q ss_pred HHHHhcCCCccEEEecCCCC-------CChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCC
Q 007516 519 GFVYACGHNMKELILTDCVK-------LTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRN 588 (600)
Q Consensus 519 ~Ll~~~~~sLk~L~Ls~C~~-------LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c 588 (600)
+...|++|+.|.|.+... +.+ .....|++|+.|+|.. .++.-+-. ...+|++|+.|.|..+
T Consensus 266 --aF~~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~~--~i~~I~~~-aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 266 --AFYYCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIPE--SIRILGQG-LLGGNRKVTQLTIPAN 333 (401)
T ss_dssp --TTTTCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCCT--TCCEECTT-TTTTCCSCCEEEECTT
T ss_pred --HhhCCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeCC--ceEEEhhh-hhcCCCCccEEEECcc
Confidence 123458999999987432 222 1234799999999985 35543322 3346999999999654
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.45 E-value=0.0057 Score=56.71 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
++|+.|+|++ +.|+...... +..+++|+.|+|++|. ++...-..+ ..++ +|++|+|++|. ++.. ....+..++
T Consensus 30 ~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~f-~~l~-~L~~L~L~~N~-l~~~-~~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQ-LTVLPAGVF-DKLT-QLTQLSLNDNQ-LKSI-PRGAFDNLK 102 (170)
T ss_dssp TTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTCT
T ss_pred CCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCC-cCccChhhc-cCCC-CCCEEECCCCc-cCEe-CHHHhcCCC
Confidence 4556666655 3333221111 1235566666666653 332211111 1233 36666666663 2211 012355666
Q ss_pred CCCEEEccCCC
Q 007516 500 HLEVLSVAGIE 510 (600)
Q Consensus 500 ~Le~L~Ls~c~ 510 (600)
+|+.|+|+++.
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 77777776665
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.42 E-value=0.0055 Score=57.17 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=39.5
Q ss_pred CCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccCchhhhHHHHHhcCC
Q 007516 420 PSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQSLNAMLILPALRKLK 499 (600)
Q Consensus 420 ~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~ 499 (600)
++|+.|+|++ +.++..... .+..+++|+.|+|++|. ++...-..+ ..++ +|+.|+|++|. ++.. ....+..++
T Consensus 33 ~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~i~~~~~-~~l~-~L~~L~L~~N~-l~~l-~~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNN-NQITKLEPG-VFDHLVNLQQLYFNSNK-LTAIPTGVF-DKLT-QLTQLDLNDNH-LKSI-PRGAFDNLK 105 (174)
T ss_dssp TTCSEEECCS-SCCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT-TCCEEECCSSC-CCCC-CTTTTTTCT
T ss_pred CCCcEEEeCC-CCccccCHH-HhcCCcCCCEEECCCCC-CCccChhHh-CCcc-hhhEEECCCCc-ccee-CHHHhcccc
Confidence 4556666655 333322111 12235666666666652 333211111 1233 46666666663 2211 012355667
Q ss_pred CCCEEEccCCC
Q 007516 500 HLEVLSVAGIE 510 (600)
Q Consensus 500 ~Le~L~Ls~c~ 510 (600)
+|+.|+|+++.
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 77777777665
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.28 E-value=0.0091 Score=55.64 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=16.2
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
..+++|+.|+|++ +.++.... .++..+++|+.|+|++|
T Consensus 54 ~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 54 DHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred cCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEEECCCC
Confidence 3455555555554 23332111 11123455555555554
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.28 E-value=0.0041 Score=63.97 Aligned_cols=83 Identities=24% Similarity=0.189 Sum_probs=45.2
Q ss_pred cceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCC
Q 007516 474 FIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPR 553 (600)
Q Consensus 474 ~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~ 553 (600)
+|+.|+|+++..++.. ....+..+++|+.|+|+++. ++...- .. ...+++|++|+|+++ .++... ..+...++
T Consensus 32 ~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~-~~-~~~l~~L~~L~l~~N-~l~~~~-~~~~~~~~- 104 (347)
T 2ifg_A 32 NLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAP-DA-FHFTPRLSRLNLSFN-ALESLS-WKTVQGLS- 104 (347)
T ss_dssp CCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECT-TG-GGSCSCCCEEECCSS-CCSCCC-STTTCSCC-
T ss_pred CeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCH-HH-hcCCcCCCEEeCCCC-ccceeC-HHHcccCC-
Confidence 4888888762234322 11346678888888887775 543211 11 123477888888774 454311 11122233
Q ss_pred ccEEeecCCC
Q 007516 554 LCTLDLSNLY 563 (600)
Q Consensus 554 L~~LdLs~C~ 563 (600)
|+.|+|.++.
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 7777777643
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.61 E-value=0.019 Score=58.89 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=20.6
Q ss_pred hcCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCC
Q 007516 416 LNSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQC 456 (600)
Q Consensus 416 ~~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C 456 (600)
+..+++|+.|+|++ +.|+..... .+..+++|+.|+|++|
T Consensus 52 ~~~l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 52 LRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCSS
T ss_pred hccccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCCC
Confidence 34566666666666 344432211 1234566666666665
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.65 E-value=0.54 Score=49.07 Aligned_cols=126 Identities=13% Similarity=0.216 Sum_probs=64.8
Q ss_pred hcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc-CchhhhHHHHHhcCCCCCEEEccC-CCCCChHHHHHH
Q 007516 443 TSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ-SLNAMLILPALRKLKHLEVLSVAG-IETVTDEFVRGF 520 (600)
Q Consensus 443 ~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~-~l~d~~i~~~l~~l~~Le~L~Ls~-c~~ltd~~l~~L 520 (600)
..|..|+.+.|... +...+-..+. .|. .|+.+.+...- .+.+ ..+..|.+|+.+.|.. ...|.+..
T Consensus 262 ~~c~~L~~i~lp~~--~~~I~~~aF~-~c~-~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~a---- 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDS--VVSIGTGAFM-NCP-ALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDA---- 329 (394)
T ss_dssp TTCSSCCEEECCTT--CCEECTTTTT-TCT-TCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTT----
T ss_pred eecccccEEecccc--cceecCcccc-ccc-ccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhH----
Confidence 35778888887653 2222222222 344 48888875432 2222 3467888888888853 23343332
Q ss_pred HHhcCCCccEEEecCC-CCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHHHHhcCCCccEEEeeCCCC
Q 007516 521 VYACGHNMKELILTDC-VKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGYLANGCQAIQTLKLCRNAF 590 (600)
Q Consensus 521 l~~~~~sLk~L~Ls~C-~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~L~~~c~~Lk~L~Ls~c~i 590 (600)
...|.+|+.+.|... ..|.+. + ..+|.+|+.+++.+. . .... -...|.+|+.|.+..+.+
T Consensus 330 -F~~C~~L~~i~ip~sv~~I~~~---a-F~~C~~L~~i~~~~~--~--~~~~-~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 -FAGCEQLERIAIPSSVTKIPES---A-FSNCTALNNIEYSGS--R--SQWN-AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp -TTTCTTCCEEEECTTCCBCCGG---G-GTTCTTCCEEEESSC--H--HHHH-TCBCCCCC----------
T ss_pred -hhCCCCCCEEEECcccCEEhHh---H-hhCCCCCCEEEECCc--e--eehh-hhhccCCCCEEEeCCCCE
Confidence 123478999988542 233332 2 347889999988873 1 1122 234578888888766543
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.35 E-value=0.29 Score=51.19 Aligned_cols=84 Identities=12% Similarity=0.263 Sum_probs=50.3
Q ss_pred HHhcCCCCCEEEccCC-CCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecCCCCCChHHHHH
Q 007516 494 ALRKLKHLEVLSVAGI-ETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSNLYKLTDFGIGY 572 (600)
Q Consensus 494 ~l~~l~~Le~L~Ls~c-~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~C~~lTd~~l~~ 572 (600)
.+..|.+|+.+.+... ..|.+.. ...|.+|+.++|.. .++.-+-.+ ..+|.+|+.++|... ++.-+-.
T Consensus 292 ~F~~~~~L~~i~l~~~i~~I~~~a-----F~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~~--l~~I~~~- 360 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDSVKFIGEEA-----FESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPLS--LRKIGAN- 360 (394)
T ss_dssp TTTTCTTCCEEEECTTCCEECTTT-----TTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCTT--CCEECTT-
T ss_pred cccccccccccccccccceechhh-----hcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECcc--ccEehHH-
Confidence 3567788888887532 2233321 22347899998854 233222122 237899999999752 4433222
Q ss_pred HHhcCCCccEEEeeCC
Q 007516 573 LANGCQAIQTLKLCRN 588 (600)
Q Consensus 573 L~~~c~~Lk~L~Ls~c 588 (600)
...+|++|++++|..+
T Consensus 361 aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR 376 (394)
T ss_dssp TBTTCTTCCEEEEEGG
T ss_pred HhhCCCCCCEEEECCC
Confidence 2346999999999765
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=73.73 E-value=3.4 Score=42.83 Aligned_cols=123 Identities=14% Similarity=0.219 Sum_probs=57.3
Q ss_pred cCCCCCCEEEcCCc-ccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCc-cCchhhhHHHH
Q 007516 417 NSLPSLTTLSICGA-CRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDC-QSLNAMLILPA 494 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c-~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c-~~l~d~~i~~~ 494 (600)
..|..|+.+.+... ..+.+.. +..|++|+.+.+... ++..+-..+. .|. +|+.+.|... ..+.+ ..
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~~~--i~~I~~~aF~-~c~-~L~~i~lp~~v~~I~~----~a 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFSSR--ITELPESVFA-GCI-SLKSIDIPEGITQILD----DA 329 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTT-TCT-TCCEEECCTTCCEECT----TT
T ss_pred eecccccEEecccccceecCcc----cccccccccccCCCc--ccccCceeec-CCC-CcCEEEeCCcccEehH----hH
Confidence 45666777766431 1122211 234667777777542 3332222222 343 4777777543 22222 34
Q ss_pred HhcCCCCCEEEccC-CCCCChHHHHHHHHhcCCCccEEEecCCCCCChHHHHHHHhcCCCccEEeecC
Q 007516 495 LRKLKHLEVLSVAG-IETVTDEFVRGFVYACGHNMKELILTDCVKLTDFSLKVIAETCPRLCTLDLSN 561 (600)
Q Consensus 495 l~~l~~Le~L~Ls~-c~~ltd~~l~~Ll~~~~~sLk~L~Ls~C~~LtD~~L~~L~~~cp~L~~LdLs~ 561 (600)
+..|.+|+.+.|.. ...|.+.. ...|.+|+.+++.+.. ..+..+ ..|..|+.|.+..
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~a-----F~~C~~L~~i~~~~~~----~~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESA-----FSNCTALNNIEYSGSR----SQWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGG-----GTTCTTCCEEEESSCH----HHHHTC-BCCCCC-------
T ss_pred hhCCCCCCEEEECcccCEEhHhH-----hhCCCCCCEEEECCce----eehhhh-hccCCCCEEEeCC
Confidence 56777788877743 23343332 1234778888877631 112222 3566777776653
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=63.10 E-value=2 Score=44.16 Aligned_cols=124 Identities=14% Similarity=0.167 Sum_probs=54.8
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCccC-chhhhHHHHH
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQS-LNAMLILPAL 495 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~~-l~d~~i~~~l 495 (600)
..+.+|+.+.+... +...+... +..|..|+.+.+..+ ++..+-..+. .|. +|+.+.+...-. +.. ..+
T Consensus 214 ~~~~~l~~i~~~~~--~~~i~~~~-f~~~~~L~~i~lp~~--v~~I~~~aF~-~~~-~l~~i~l~~~i~~i~~----~aF 282 (379)
T 4h09_A 214 SYGKNLKKITITSG--VTTLGDGA-FYGMKALDEIAIPKN--VTSIGSFLLQ-NCT-ALKTLNFYAKVKTVPY----LLC 282 (379)
T ss_dssp TTCSSCSEEECCTT--CCEECTTT-TTTCSSCCEEEECTT--CCEECTTTTT-TCT-TCCEEEECCCCSEECT----TTT
T ss_pred ccccccceeeeccc--eeEEcccc-ccCCccceEEEcCCC--ccEeCccccc-eee-hhccccccccceeccc----ccc
Confidence 34566666666431 22111111 223666776666543 3322222221 233 366666643311 111 234
Q ss_pred hcCCCCCEEEccCC--CCCChHHHHHHHHhcCCCccEEEecC-CCCCChHHHHHHHhcCCCccEEeec
Q 007516 496 RKLKHLEVLSVAGI--ETVTDEFVRGFVYACGHNMKELILTD-CVKLTDFSLKVIAETCPRLCTLDLS 560 (600)
Q Consensus 496 ~~l~~Le~L~Ls~c--~~ltd~~l~~Ll~~~~~sLk~L~Ls~-C~~LtD~~L~~L~~~cp~L~~LdLs 560 (600)
..|++|+.+.+.+. ..|.+..+ ..|.+|+.+.|.. ...|.+. ++ .+|.+|+.+.|.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF-----~~c~~L~~i~lp~~l~~I~~~---aF-~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVF-----MDCVKLSSVTLPTALKTIQVY---AF-KNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTT-----TTCTTCCEEECCTTCCEECTT---TT-TTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhh-----cCCCCCCEEEcCccccEEHHH---Hh-hCCCCCCEEEEC
Confidence 56667777766543 22332211 2236677776643 1222221 12 256666666664
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=57.60 E-value=5.2 Score=41.45 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCceeecCCCCCCCCchhhHHHHHHHhcCCCCCCEEEcCCc-ccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHH
Q 007516 389 KNLTVLQLDRCGRCMPDYILLSTLASSLNSLPSLTTLSICGA-CRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDIL 467 (600)
Q Consensus 389 ~~L~~L~Ls~c~~~~~D~~~~~~L~~~~~~l~~L~~L~Ls~c-~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L 467 (600)
..|+.+.+.... +.+ .....|.+|+.+.+... ..|.+.+ +..|.+|+.++|... ++..+-..+
T Consensus 276 ~~l~~~~~~~~~--i~~--------~~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF 339 (394)
T 4fs7_A 276 SGLKKVIYGSVI--VPE--------KTFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSF 339 (394)
T ss_dssp TTCCEEEECSSE--ECT--------TTTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTT
T ss_pred cccceeccCcee--ecc--------ccccccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhc
Confidence 567766654432 111 13457888999888642 2233322 345889999998653 444333333
Q ss_pred HhhccccceEEEccCc-cCchhhhHHHHHhcCCCCCEEEccCC
Q 007516 468 ADKLGSFIQELYINDC-QSLNAMLILPALRKLKHLEVLSVAGI 509 (600)
Q Consensus 468 ~~~~~s~L~~L~Ls~c-~~l~d~~i~~~l~~l~~Le~L~Ls~c 509 (600)
. .|. +|+.+.|..+ ..+.+ .++..|++|+.+.|...
T Consensus 340 ~-~c~-~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 R-GCT-SLSNINFPLSLRKIGA----NAFQGCINLKKVELPKR 376 (394)
T ss_dssp T-TCT-TCCEECCCTTCCEECT----TTBTTCTTCCEEEEEGG
T ss_pred c-CCC-CCCEEEECccccEehH----HHhhCCCCCCEEEECCC
Confidence 2 454 5899888654 22333 35678999999988653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=49.79 E-value=7.8 Score=39.61 Aligned_cols=103 Identities=10% Similarity=0.214 Sum_probs=52.9
Q ss_pred cCCCCCCEEEcCCcccCChhhHHHHHhcCCCCcEEecCCCCCCCchhHHHHHhhccccceEEEccCcc--CchhhhHHHH
Q 007516 417 NSLPSLTTLSICGACRISDVGFKALVTSAPALRSINLSQCSLLSSTSVDILADKLGSFIQELYINDCQ--SLNAMLILPA 494 (600)
Q Consensus 417 ~~l~~L~~L~Ls~c~~LtD~~l~~L~~~~p~L~~L~Ls~C~~Itd~~L~~L~~~~~s~L~~L~Ls~c~--~l~d~~i~~~ 494 (600)
..|..|+.+.+... ++..+-. .+..|.+|+.+.+... ++..+-..+ ..|. +|+.+.+.++. .+.+ ..
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~--i~~i~~~aF-~~c~-~L~~i~l~~~~i~~I~~----~a 305 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAK--VKTVPYLLC-SGCS-NLTKVVMDNSAIETLEP----RV 305 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCC--CSEECTTTT-TTCT-TCCEEEECCTTCCEECT----TT
T ss_pred cCCccceEEEcCCC--ccEeCcc-ccceeehhcccccccc--ceecccccc-cccc-ccccccccccccceehh----hh
Confidence 45677777777542 2222211 1234677777777542 333222222 2344 47777776542 2333 34
Q ss_pred HhcCCCCCEEEccC-CCCCChHHHHHHHHhcCCCccEEEecC
Q 007516 495 LRKLKHLEVLSVAG-IETVTDEFVRGFVYACGHNMKELILTD 535 (600)
Q Consensus 495 l~~l~~Le~L~Ls~-c~~ltd~~l~~Ll~~~~~sLk~L~Ls~ 535 (600)
+..|.+|+.+.|.. ...|.+.. ...|.+|+.+.|..
T Consensus 306 F~~c~~L~~i~lp~~l~~I~~~a-----F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 306 FMDCVKLSSVTLPTALKTIQVYA-----FKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCEEECCTTCCEECTTT-----TTTCTTCCCCCCCT
T ss_pred hcCCCCCCEEEcCccccEEHHHH-----hhCCCCCCEEEECC
Confidence 56777888887743 33333321 12346777777743
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.09 E-value=10 Score=33.17 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=16.4
Q ss_pred ccccceEEEccCccCchhhhHHHHHhcCCCCCEEEccCCC
Q 007516 471 LGSFIQELYINDCQSLNAMLILPALRKLKHLEVLSVAGIE 510 (600)
Q Consensus 471 ~~s~L~~L~Ls~c~~l~d~~i~~~l~~l~~Le~L~Ls~c~ 510 (600)
+|.+|+.|+|++|. ++... ...+..+++|+.|+|.++.
T Consensus 29 lp~~l~~L~Ls~N~-l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 29 FPVDTTELVLTGNN-LTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CCTTCSEEECTTSC-CSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred CCcCCCEEECCCCc-CCccC-hhhhhhccccCEEEecCCC
Confidence 33445555555553 21110 1223445555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=32.36 E-value=30 Score=30.05 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=5.9
Q ss_pred CCCCcEEecCCCC
Q 007516 445 APALRSINLSQCS 457 (600)
Q Consensus 445 ~p~L~~L~Ls~C~ 457 (600)
+++|+.|+|.+|+
T Consensus 54 l~~L~~L~L~~NP 66 (130)
T 3rfe_A 54 LPALRTAHLGANP 66 (130)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEEecCCC
Confidence 3444444444443
Done!