BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007517
         (600 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OKX|A Chain A, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
           Sp. Gl1 At 1.9 A
 pdb|2OKX|B Chain B, Crystal Structure Of Gh78 Family Rhamnosidase Of Bacillus
           Sp. Gl1 At 1.9 A
          Length = 956

 Score = 32.7 bits (73), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 53  IDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
           +DD RR +  M   D      M   +       E R   D + + +  +W+     ++ +
Sbjct: 821 LDDIRRNYGQMLRYDATTCWEMYPNFA------ENRSNPDMLTRSHCHAWSAAPGYFLGS 874

Query: 113 NRIDVAR-----KLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASN-- 165
           + + V R     +  ++ P+  +++W   ++   Q G I  +WE   A  +K  + +   
Sbjct: 875 SILGVKRGADGWRTVDIAPQPCDLTWAEGVVPLPQGGHIAVSWEFVSAGKLKLRIEAPED 934

Query: 166 ---SMILGLGQNGEVQKAR 181
              ++ L  G  GEV + +
Sbjct: 935 IEVNVTLPEGIEGEVTQVK 953


>pdb|1Z0X|A Chain A, Crystal Structure Of Transcriptional Regulator, Tetr
           Family From Enterococcus Faecalis V583
 pdb|1Z0X|B Chain B, Crystal Structure Of Transcriptional Regulator, Tetr
           Family From Enterococcus Faecalis V583
          Length = 220

 Score = 32.0 bits (71), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 488 PEHPMIMRMLEKIGGLLREAGYCPDSS 514
           P +P  +R L +  G+LREAG+ P+ +
Sbjct: 104 PAYPQRLRHLNQXXGILREAGFSPEXT 130


>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
 pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
           Tpr Motif
          Length = 125

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 376 RAGQVEDAMKLIE-AMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433
           + G  ++A++  + A+  +P+ A  W +L  A       D A    +K L+L+P NA  +
Sbjct: 21  KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 80

Query: 434 ILLSNIYASQGRFHDVAE 451
             L N Y  QG + +  E
Sbjct: 81  YNLGNAYYKQGDYDEAIE 98


>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
          Length = 125

 Score = 29.3 bits (64), Expect = 7.3,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439
           +E   K +E  P   +A  W +L  A       D A    +K L+L P NA  +  L N 
Sbjct: 29  IEYYQKALELYPNNAEA--WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNA 86

Query: 440 YASQGRFHDVAE 451
           Y  QG + +  E
Sbjct: 87  YYKQGDYDEAIE 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,937,817
Number of Sequences: 62578
Number of extensions: 730757
Number of successful extensions: 1614
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 10
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)