BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007517
(600 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/600 (71%), Positives = 508/600 (84%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTAMV+GY++EGM+ EA +LFW+MPE+N VSWTVM GG I D RID AR+L+
Sbjct: 105 MPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
DMMP KDVVA TNM+ G C++GRVDE R IFDEM ++NV++WTTMI+GY NNR+DVARK
Sbjct: 165 DMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LFEVMPEK EVSWT+ML+GYT GRI+DA E F+ MPMK V+A N+MI+G G+ GE+ KA
Sbjct: 225 LFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M ++D+ATW GMIK YERKG+ELE +DLF MQK+GVR +FPSLIS+LSVCA+L
Sbjct: 285 RRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL +GRQVHA LVRCQFD DVYVASVL+TMY+KCGELVK KL+FD F+SKDI+MWNSII
Sbjct: 345 ASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
SGYA +GLGE++LK+FHEM SSG MP+ VTL+ +L+ACSY GK++EG EIFESM+SK+ V
Sbjct: 405 SGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCV 464
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHY+C VD+LGRAGQV+ AM+LIE+M +PDA +WG+LLGAC+TH +LDLAEVAAK
Sbjct: 465 TPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAEVAAK 524
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
KL + EP NAG Y+LLS+I AS+ ++ DVA +RKNMR NV K PGCSWIEV KKVHMFT
Sbjct: 525 KLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFT 584
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
+HPE MI+ MLEK GLLREAGY PD S VLHDVDEEEKV SL HSE+LAVAY
Sbjct: 585 RGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAY 644
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
GL+KLPEGVPIRVMKNLRVCGDCH+AIKLISKV REIILRDANRFHHF +G CSCRDYW
Sbjct: 645 GLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/451 (29%), Positives = 225/451 (49%), Gaps = 21/451 (4%)
Query: 20 GMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYC 79
G I EA F + K + SW ++ G+ + +AR+LFD M E++VV+ +V GY
Sbjct: 31 GKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYI 90
Query: 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG 139
++ + E R +F+ MP++NV+SWT M+ GY+ + A LF MPE+NEVSWT M G
Sbjct: 91 KNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGG 150
Query: 140 YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMI 199
GRI A +L+ MP+K VVAS +MI GL + G V +AR++FD+MRE++ TW+ MI
Sbjct: 151 LIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMI 210
Query: 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259
Y + LF +M E V++ S++ ++ + + +V
Sbjct: 211 TGYRQNNRVDVARKLFEVM-PEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM------- 262
Query: 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEM 319
V + +I + + GE+ K + +FD +D W +I Y + G ++L +F +M
Sbjct: 263 KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQM 322
Query: 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379
GV P +L+ +LS C+ ++ GR++ + + + + ++ + + G+
Sbjct: 323 QKQGVRPSFPSLISILSVCATLASLQYGRQVHAHL-VRCQFDDDVYVASVLMTMYVKCGE 381
Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP------Y 433
+ A KL+ D I+W S++ +H L E A K ++ P
Sbjct: 382 LVKA-KLVFDRFSSKDIIMWNSIISGYASH---GLGEEALKIFHEMPSSGTMPNKVTLIA 437
Query: 434 ILLSNIYASQGRFHDVAELRKNMRKRNVIKP 464
IL + YA G+ + E+ ++M + + P
Sbjct: 438 ILTACSYA--GKLEEGLEIFESMESKFCVTP 466
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 143/293 (48%), Gaps = 43/293 (14%)
Query: 141 TQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIK 200
++ G+I +A + F ++ K++ + NS++ G NG ++AR +FD+M E++ +W+G++
Sbjct: 28 SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87
Query: 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLI------SVLSVCASL-------------- 240
Y + +E ++F LM + V V++ +++ ++ SL
Sbjct: 88 GYIKNRMIVEARNVFELMPERNV-VSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTV 146
Query: 241 ---ASLDHGRQVHAQLVRCQFDV-DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
+D GR A+ + V DV ++ +I + G + + +LIFD +++V W
Sbjct: 147 MFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTW 206
Query: 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESM 354
++I+GY Q + + K+F VMP+ +V+ +L + +G++++ E FE M
Sbjct: 207 TTMITGYRQNNRVDVARKLFE------VMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVM 260
Query: 355 KSKYLVEPKTEHYAC--MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
K ++ AC M+ G G++ A ++ + M + D W ++ A
Sbjct: 261 PMKPVI-------ACNAMIVGFGEVGEISKARRVFDLME-DRDNATWRGMIKA 305
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 54/293 (18%)
Query: 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSL 230
L + G++ +AR FD ++ K +W+ ++ Y G E LF M + V V++ L
Sbjct: 27 LSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV-VSWNGL 85
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290
+S YIK +V+ + +F+
Sbjct: 86 VS--------------------------------------GYIKNRMIVEARNVFELMPE 107
Query: 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
+++V W +++ GY Q G+ ++ +F M + V G++ G++ + R++
Sbjct: 108 RNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLID----DGRIDKARKL 163
Query: 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHM 410
++ M K +V M+ L R G+V++A + + M E + + W +++ R +
Sbjct: 164 YDMMPVKDVVASTN-----MIGGLCREGRVDEARLIFDEMR-ERNVVTWTTMITGYRQNN 217
Query: 411 KLDLAEVAAKKLLQLEP-KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462
++D+ A+KL ++ P K + + Y GR D E + M + VI
Sbjct: 218 RVDV----ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVI 266
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 254 VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313
V C F+ I+ + G++ + + FD+ K I WNSI+SGY GL +++
Sbjct: 18 VNCSFE---------ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEAR 68
Query: 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373
++F EM V V+ G++S + E R +FE M + +V + MV
Sbjct: 69 QLFDEMSERNV----VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKG 119
Query: 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP-KNAGP 432
+ G V +A L MP E + + W + G ++D A+KL + P K+
Sbjct: 120 YMQEGMVGEAESLFWRMP-ERNEVSWTVMFGGLIDDGRID----KARKLYDMMPVKDVVA 174
Query: 433 YILLSNIYASQGRFHDVAELRKNMRKRNVI 462
+ +GR + + MR+RNV+
Sbjct: 175 STNMIGGLCREGRVDEARLIFDEMRERNVV 204
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/601 (68%), Positives = 506/601 (84%), Gaps = 1/601 (0%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERNVVSWTA+V+GYV G + A +LFW+MPEKN VSWTVML GF++D RIDDA +L+
Sbjct: 105 MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+M+P+KD +A+T+M+ G C++GRVDE REIFDEM +++VI+WTTM++GY NNR+D ARK
Sbjct: 165 EMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARK 224
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
+F+VMPEK EVSWT+MLMGY Q GRI+DA ELF+ MP+K V+A N+MI GLGQ GE+ KA
Sbjct: 225 IFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAMISGLGQKGEIAKA 284
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M+E++DA+W +IK++ER G+ELE +DLF LMQK+GVR FP+LIS+LSVCASL
Sbjct: 285 RRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCASL 344
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
ASL HG+QVHAQLVRCQFDVDVYVASVL+TMYIKCGELVK KLIFD F SKDI+MWNSII
Sbjct: 345 ASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSII 404
Query: 301 SGYAQYGLGEKSLKVFHEM-FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
SGYA +GLGE++LKVF EM S P++VT V LSACSY G V+EG +I+ESM+S +
Sbjct: 405 SGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFG 464
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419
V+P T HYACMVD+LGRAG+ +AM++I++M EPDA +WGSLLGACRTH +LD+AE A
Sbjct: 465 VKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCA 524
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479
KKL+++EP+N+G YILLSN+YASQGR+ DVAELRK M+ R V K PGCSW EVE KVH F
Sbjct: 525 KKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAF 584
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVA 539
T SHPE I+++L+++ GLLREAGY PD S+ LHDVDEEEKV+SL+YHSE+LAVA
Sbjct: 585 TRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVA 644
Query: 540 YGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
Y L+KL EG+PIRVMKNLRVC DCH+AIK+ISKV REIILRDANRFHHF++G CSC+DY
Sbjct: 645 YALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDY 704
Query: 600 W 600
W
Sbjct: 705 W 705
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 221/395 (55%), Gaps = 20/395 (5%)
Query: 20 GMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYC 79
G I EA LF K++ SW M+ G+ + DAR+LFD MP++++++ +V GY
Sbjct: 31 GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYM 90
Query: 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG 139
++G +DE R++FD MP++NV+SWT ++ GYV+N ++DVA LF MPEKN+VSWT ML+G
Sbjct: 91 KNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIG 150
Query: 140 YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMI 199
+ Q GRI DA +L++ +P K +A SMI GL + G V +AR +FD+M E+ TW+ M+
Sbjct: 151 FLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMV 210
Query: 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259
Y + + +F +M E V++ S++ + + +GR A+ + F+
Sbjct: 211 TGYGQNNRVDDARKIFDVM-PEKTEVSWTSML--------MGYVQNGRIEDAEEL---FE 258
Query: 260 V----DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKV 315
V V + +I+ + GE+ K + +FD+ ++ W ++I + + G ++L +
Sbjct: 259 VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDL 318
Query: 316 FHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM-KSKYLVEPKTEHYACMVDLL 374
F M GV P TL+ +LS C+ + G+++ + + ++ V+ + ++ +
Sbjct: 319 FILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA--SVLMTMY 376
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
+ G++ + + + P D I+W S++ +H
Sbjct: 377 IKCGELVKSKLIFDRFP-SKDIIMWNSIISGYASH 410
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 134/284 (47%), Gaps = 42/284 (14%)
Query: 141 TQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIK 200
++ G+I +A +LF + KS+ + NSM+ G N + AR +FD+M +++ +W+G++
Sbjct: 28 SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87
Query: 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLI------SVLSVCASL-------------- 240
Y + G E +F LM + V V++ +L+ + V SL
Sbjct: 88 GYMKNGEIDEARKVFDLMPERNV-VSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTV 146
Query: 241 ---ASLDHGRQVHA-QLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
L GR A +L D D + +I K G + + + IFD + + ++ W
Sbjct: 147 MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITW 206
Query: 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESM 354
++++GY Q + + K+F VMP+ +V+ +L G++++ E+FE M
Sbjct: 207 TTMVTGYGQNNRVDDARKIF------DVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM 260
Query: 355 KSKYLVEPKTEHYAC--MVDLLGRAGQVEDAMKLIEAMPFEPDA 396
K ++ AC M+ LG+ G++ A ++ ++M DA
Sbjct: 261 PVKPVI-------ACNAMISGLGQKGEIAKARRVFDSMKERNDA 297
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 163 ASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG 222
+N I L + G++ +AR +FD K ++W+ M+ Y + LF M
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDR- 77
Query: 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDV----DVYVASVLITMYIKCGEL 278
N S ++S +D R+V FD+ +V + L+ Y+ G++
Sbjct: 78 ---NIISWNGLVSGYMKNGEIDEARKV--------FDLMPERNVVSWTALVKGYVHNGKV 126
Query: 279 VKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
+ +F K+ V W ++ G+ Q G + + K++ EM D++ ++
Sbjct: 127 DVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY-EMIPD---KDNIARTSMIHGL 182
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398
G+V E REIF+ M + ++ + MV G+ +V+DA K+ + MP E +
Sbjct: 183 CKEGRVDEAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMP-EKTEVS 236
Query: 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRK---N 455
W S+L + +++ AE +L ++ P P I + + + G+ ++A+ R+ +
Sbjct: 237 WTSMLMGYVQNGRIEDAE----ELFEVMP--VKPVIACNAMISGLGQKGEIAKARRVFDS 290
Query: 456 MRKRN 460
M++RN
Sbjct: 291 MKERN 295
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323
A+V IT + G++ + + +FD+ SK I WNS+++GY + + K+F EM
Sbjct: 19 TANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRN 78
Query: 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383
+ ++ G++S G++ E R++F+ M + +V + +V G+V+ A
Sbjct: 79 I----ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS-----WTALVKGYVHNGKVDVA 129
Query: 384 MKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP-KNAGPYILLSNIYAS 442
L MP E + + W +L ++D A KL ++ P K+ + +
Sbjct: 130 ESLFWKMP-EKNKVSWTVMLIGFLQDGRID----DACKLYEMIPDKDNIARTSMIHGLCK 184
Query: 443 QGRFHDVAELRKNMRKRNVI 462
+GR + E+ M +R+VI
Sbjct: 185 EGRVDEAREIFDEMSERSVI 204
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/631 (47%), Positives = 422/631 (66%), Gaps = 32/631 (5%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKN------------------------ 36
MPER+V SW M+ GY + G + +A ++F +MPEKN
Sbjct: 152 MPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLF 211
Query: 37 -------VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGRE 89
+VSW +LGGF++ +I +AR+ FD M +DVV+ ++ GY Q G++DE R+
Sbjct: 212 KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQ 271
Query: 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDA 149
+FDE P ++V +WT M+SGY+ N ++ AR+LF+ MPE+NEVSW AML GY Q R++ A
Sbjct: 272 LFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMA 331
Query: 150 WELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209
ELF MP ++V N+MI G Q G++ +A+ +FD+M ++D +W+ MI Y + G+
Sbjct: 332 KELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSF 391
Query: 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269
E + LF M++EG R+N S S LS CA + +L+ G+Q+H +LV+ ++ +V + L+
Sbjct: 392 EALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALL 451
Query: 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329
MY KCG + + +F A KDIV WN++I+GY+++G GE +L+ F M G+ PDD
Sbjct: 452 LMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDA 511
Query: 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
T+V VLSACS+TG V +GR+ F +M Y V P ++HYACMVDLLGRAG +EDA L++
Sbjct: 512 TMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKN 571
Query: 390 MPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449
MPFEPDA IWG+LLGA R H +LAE AA K+ +EP+N+G Y+LLSN+YAS GR+ DV
Sbjct: 572 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDV 631
Query: 450 AELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGY 509
+LR MR + V K PG SWIE++ K H F+ D HPE I LE++ +++AGY
Sbjct: 632 GKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEF-HPEKDEIFAFLEELDLRMKKAGY 690
Query: 510 CPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKL 569
+S VLHDV+EEEK +RYHSE+LAVAYG++++ G PIRV+KNLRVC DCH+AIK
Sbjct: 691 VSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKY 750
Query: 570 ISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
++++ GR IILRD NRFHHFKDG CSC DYW
Sbjct: 751 MARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 145/501 (28%), Positives = 246/501 (49%), Gaps = 63/501 (12%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP + VS+ M+ GY+ G A LF +MPE+++VSW VM+ G++R+ + AR LF
Sbjct: 90 MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF 149
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
++MPE+DV + M+ GY Q+G VD+ R +FD MP+KN +SW ++S YV N++++ A
Sbjct: 150 EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACM 209
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
LF+ VSW +L G+ + +I +A + F +M ++ VV+ N++I G Q+G++ +A
Sbjct: 210 LFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEA 269
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R +FD+ +D TW+ M+ Y + E +LF M + + +S A L
Sbjct: 270 RQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER----------NEVSWNAML 319
Query: 241 ASLDHGRQVHAQLVRCQFDV----DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
A G ++ ++ + FDV +V + +IT Y +CG++ + K +FD +D V W
Sbjct: 320 AGYVQGERM--EMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSW 377
Query: 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS----------------- 339
++I+GY+Q G ++L++F +M G + + LS C+
Sbjct: 378 AAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVK 437
Query: 340 ------------------YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381
G ++E ++F+ M K +V T M+ R G E
Sbjct: 438 GGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT-----MIAGYSRHGFGE 492
Query: 382 DAMKLIEAMPFE---PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ---LEPKNAGPYIL 435
A++ E+M E PD ++L AC +D + Q + P N+ Y
Sbjct: 493 VALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMP-NSQHYAC 551
Query: 436 LSNIYASQGRFHDVAELRKNM 456
+ ++ G D L KNM
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNM 572
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/586 (46%), Positives = 377/586 (64%), Gaps = 3/586 (0%)
Query: 17 VEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRD-SRIDDARRLFDMMPEKDVVAQTNMV 75
V G I A +F M KN ++W +L G +D SR+ +A +LFD +PE D + M+
Sbjct: 72 VRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSYNIML 131
Query: 76 LGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTA 135
Y ++ ++ + FD MP K+ SW TMI+GY ++ AR+LF M EKNEVSW A
Sbjct: 132 SCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMMEKNEVSWNA 191
Query: 136 MLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMR-EKDDAT 194
M+ GY +CG ++ A FK P++ VVA +MI G + +V+ A +F M K+ T
Sbjct: 192 MISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVT 251
Query: 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254
W+ MI Y + + LF M +EG+R N L S L C+ L++L GRQ+H +
Sbjct: 252 WNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVS 311
Query: 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLK 314
+ DV + LI+MY KCGEL +F+ KD+V WN++ISGYAQ+G +K+L
Sbjct: 312 KSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALC 371
Query: 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374
+F EM + + PD +T V VL AC++ G V G FESM Y VEP+ +HY CMVDLL
Sbjct: 372 LFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 431
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
GRAG++E+A+KLI +MPF P A ++G+LLGACR H ++LAE AA+KLLQL +NA Y+
Sbjct: 432 GRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYV 491
Query: 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIM 494
L+NIYAS+ R+ DVA +RK M++ NV+K PG SWIE+ KVH F D + HPE I
Sbjct: 492 QLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI-HPELDSIH 550
Query: 495 RMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVM 554
+ L+++ ++ AGY P+ F LH+V+EE+K L +HSEKLAVA+G +KLP+G I+V
Sbjct: 551 KKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVF 610
Query: 555 KNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
KNLR+CGDCH AIK IS++ REII+RD RFHHFKDG CSC DYW
Sbjct: 611 KNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 40/295 (13%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
+PE + S+ M+ YV +A + F +MP K+ SW M+ G+ R ++ AR LF
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELF 178
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
M EK+ V+ M+ GY + G +++ F P + V++WT MI+GY+ ++++A
Sbjct: 179 YSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEA 238
Query: 121 LFEVMP-EKNEVSWTAMLMGYTQCGRIQDAWELFKAM------PMKS------------- 160
+F+ M KN V+W AM+ GY + R +D +LF+AM P S
Sbjct: 239 MFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELS 298
Query: 161 --------------------VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIK 200
V A S+I + GE+ A +F+ M++KD W+ MI
Sbjct: 299 ALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMIS 358
Query: 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
Y + G + + LF M +R ++ + ++VL C ++ G +VR
Sbjct: 359 GYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVR 413
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 158/323 (48%), Gaps = 14/323 (4%)
Query: 96 KKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQ-CGRIQDAWELFK 154
+ + +I+ V + ID A ++F M KN ++W ++L+G ++ R+ +A +LF
Sbjct: 58 QDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFD 117
Query: 155 AMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL 214
+P + N M+ +N +KA+ FD+M KD A+W+ MI Y R+G + +L
Sbjct: 118 EIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAREL 177
Query: 215 F-TLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273
F ++M+K V N ++IS C L H +V VR V + +IT Y+
Sbjct: 178 FYSMMEKNEVSWN--AMISGYIECGDLEKASHFFKVAP--VR-----GVVAWTAMITGYM 228
Query: 274 KCGELVKGKLIF-DNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV 332
K ++ + +F D +K++V WN++ISGY + E LK+F M G+ P+ L
Sbjct: 229 KAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLS 288
Query: 333 GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPF 392
L CS ++ GR+I + + L T ++ + + G++ DA KL E M
Sbjct: 289 SALLGCSELSALQLGRQIHQIVSKSTLCNDVTA-LTSLISMYCKCGELGDAWKLFEVMK- 346
Query: 393 EPDAIIWGSLLGACRTHMKLDLA 415
+ D + W +++ H D A
Sbjct: 347 KKDVVAWNAMISGYAQHGNADKA 369
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 44/175 (25%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVS--------------------- 39
M +++VV+W AM+ GY + G +A LF +M + +
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404
Query: 40 -------------------WTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQ 80
+T M+ R ++++A +L MP + A +LG C+
Sbjct: 405 MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACR 464
Query: 81 DGRVDEGREIFDE----MPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEV 131
+ E E E + +N + + + Y + NR + ++ + M E N V
Sbjct: 465 VHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVV 519
>sp|Q9FHF9|PP419_ARATH Pentatricopeptide repeat-containing protein At5g46460,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H49 PE=2
SV=1
Length = 697
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/640 (37%), Positives = 363/640 (56%), Gaps = 43/640 (6%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
+P +V +T M+ GY + +A LF +MP ++VVSW M+ G + ++ A +LF
Sbjct: 61 VPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLF 120
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
D MPE+ VV+ T MV G + G+VD+ +F +MP K+ +W +M+ GY+ ++D A K
Sbjct: 121 DEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALK 180
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------PMKSVVA------- 163
LF+ MP KN +SWT M+ G Q R +A +LFK M P V+
Sbjct: 181 LFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPA 240
Query: 164 ----------------------SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKV 201
S S+I + +R VFD+ + A W+ ++
Sbjct: 241 FHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSG 300
Query: 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261
Y + + +F+ M + + N + S L+ C++L +LD G+++H V+ + D
Sbjct: 301 YSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETD 360
Query: 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321
+V + L+ MY G + +F K IV WNSII G AQ+G G+ + +F +M
Sbjct: 361 AFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIR 420
Query: 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY-LVEPKTEHYACMVDLLGRAGQV 380
PD++T G+LSACS+ G +++GR++F M S ++ K +HY CMVD+LGR G++
Sbjct: 421 LNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKL 480
Query: 381 EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440
++A +LIE M +P+ ++W +LL ACR H +D E AA + L+ K++ Y+LLSNIY
Sbjct: 481 KEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIY 540
Query: 441 ASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKI 500
AS GR+ +V++LR M+K ++K PG SW+ + K H F D P I LE +
Sbjct: 541 ASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD---QPHCSRIYEKLEFL 597
Query: 501 GGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVC 560
L+E GY PD LHDV++E+K L YHSE+LA+A+GL+ EG + VMKNLRVC
Sbjct: 598 REKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVC 657
Query: 561 GDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
DCH+ IKLIS V+GREI+LRD RFHHFK+G CSC DYW
Sbjct: 658 EDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697
Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/418 (29%), Positives = 215/418 (51%), Gaps = 35/418 (8%)
Query: 22 ITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQD 81
I EA +F Q+P +V +T M+ G+ R +R+ DA LFD MP +DVV+ +M+ G +
Sbjct: 51 IDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVEC 110
Query: 82 GRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYT 141
G ++ ++FDEMP+++V+SWT M++G + ++D A +LF MP K+ +W +M+ GY
Sbjct: 111 GDMNTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYL 170
Query: 142 QCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKV 201
Q G++ DA +LFK MP K+V++ +MI GL QN
Sbjct: 171 QFGKVDDALKLFKQMPGKNVISWTTMICGLDQN--------------------------- 203
Query: 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261
ER G E +DLF M + ++ V++ CA+ + G QVH +++ F +
Sbjct: 204 -ERSG---EALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYE 259
Query: 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321
YV++ LIT Y C + + +FD + + +W +++SGY+ E +L +F M
Sbjct: 260 EYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLR 319
Query: 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381
+ ++P+ T L++CS G + G+E+ + K +E +V + +G V
Sbjct: 320 NSILPNQSTFASGLNSCSALGTLDWGKEM-HGVAVKLGLETDAFVGNSLVVMYSDSGNVN 378
Query: 382 DAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYILLS 437
DA+ + + F+ + W S++ C H + A V ++++L EP LLS
Sbjct: 379 DAVSVFIKI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLS 435
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/614 (37%), Positives = 360/614 (58%), Gaps = 15/614 (2%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV--VSWTVMLGGFIRDSRIDDAR- 57
MPE++ + W M+ GY + M E+ +F + ++ + T +L + + + R
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239
Query: 58 --RLFDMMPEKDVVAQTNMVLG----YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
++ + + + ++ G Y + G++ G +F E K +++++ MI GY +
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 112 NNRIDVARKLF-EVMPEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVASNS 166
N +++ LF E+M + + ++ G + + + K+ + S +
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359
Query: 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+ + E++ AR +FD+ EK +W+ MI Y + G + I LF MQK N
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Query: 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286
++ +LS CA L +L G+ VH + F+ +YV++ LI MY KCG + + + +FD
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479
Query: 287 NFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346
K+ V WN++ISGY +G G+++L +F+EM +SG+ P VT + VL ACS+ G VKE
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539
Query: 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406
G EIF SM +Y EP +HYACMVD+LGRAG ++ A++ IEAM EP + +W +LLGAC
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599
Query: 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466
R H +LA ++KL +L+P N G ++LLSNI+++ + A +R+ +KR + K PG
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659
Query: 467 CSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKV 526
+ IE+ + H+FT D SHP+ I LEK+ G +REAGY P++ LHDV+EEE+
Sbjct: 660 YTLIEIGETPHVFTSGD-QSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERE 718
Query: 527 HSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRF 586
++ HSE+LA+A+GL+ G IR++KNLRVC DCH+ KLISK+ R I++RDANRF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778
Query: 587 HHFKDGLCSCRDYW 600
HHFKDG+CSC DYW
Sbjct: 779 HHFKDGVCSCGDYW 792
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 91/386 (23%), Positives = 166/386 (43%), Gaps = 78/386 (20%)
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN------------ 112
+ +++ +N+V Y + RV++ R++FD MP+K+ I W TMISGY N
Sbjct: 151 DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 113 ------NRIDVARKLFEVMPEKNEVS-----------------------WTAMLMGYTQC 143
R+D L +++P E+ T + Y++C
Sbjct: 211 LINESCTRLDTT-TLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKC 269
Query: 144 GRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYE 203
G+I+ LF+ +VA N+MI G NGE + +
Sbjct: 270 GKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS----------------------- 306
Query: 204 RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVY 263
+ LF + G R+ +L+S++ V L + +H ++ F
Sbjct: 307 --------LSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YAIHGYCLKSNFLSHAS 355
Query: 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323
V++ L T+Y K E+ + +FD K + WN++ISGY Q GL E ++ +F EM S
Sbjct: 356 VSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSE 415
Query: 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383
P+ VT+ +LSAC+ G + G+ + + ++S E ++ + + G + +A
Sbjct: 416 FSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEA 474
Query: 384 MKLIEAMPFEPDAIIWGSLLGACRTH 409
+L + M + + + W +++ H
Sbjct: 475 RRLFDLMT-KKNEVTWNTMISGYGLH 499
Score = 62.8 bits (151), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 118/255 (46%), Gaps = 4/255 (1%)
Query: 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG-VRVNFPS 229
L G + AR +F ++ D ++ +++ + + +F ++K ++ N +
Sbjct: 62 LSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSST 121
Query: 230 LISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA 289
+S + GR +H Q V D ++ + S ++ MY K + + +FD
Sbjct: 122 YAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMP 181
Query: 290 SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS-SGVMPDDVTLVGVLSACSYTGKVKEGR 348
KD ++WN++ISGY + + +S++VF ++ + S D TL+ +L A + +++ G
Sbjct: 182 EKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGM 241
Query: 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT 408
+I S+ +K + L + G+++ L +PD + + +++ +
Sbjct: 242 QI-HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTS 299
Query: 409 HMKLDLAEVAAKKLL 423
+ + +L+ K+L+
Sbjct: 300 NGETELSLSLFKELM 314
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 13/173 (7%)
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
S+ H Q HAQ++ F D+ + + L G + + IF + D+ ++N ++
Sbjct: 31 TSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLM 90
Query: 301 SGYAQYGLGEKSLKVF-HEMFSSGVMPDDVTLVGVLSACS-----YTGKVKEGREIFESM 354
G++ SL VF H S+ + P+ T +SA S G+V G+ + +
Sbjct: 91 RGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGC 150
Query: 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407
S+ L+ +V + + +VEDA K+ + MP E D I+W +++ R
Sbjct: 151 DSELLLGSN------IVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISGYR 196
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 448 bits (1152), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/605 (37%), Positives = 356/605 (58%), Gaps = 48/605 (7%)
Query: 43 MLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP----KKN 98
M ++R R+ DAR++FD M +KDVV + ++ Y + G ++E I EM + N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216
Query: 99 VISWTTMISGYVNNNRIDVARKLFE----------------VMPE--------------- 127
++SW ++SG+ + A +F+ V+P
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHG 276
Query: 128 --------KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQK 179
K++ +AM+ Y + G + LF M N+ I GL +NG V K
Sbjct: 277 YVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDK 336
Query: 180 ARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235
A +F+ +E+ + +W+ +I + G ++E ++LF MQ GV+ N ++ S+L
Sbjct: 337 ALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLP 396
Query: 236 VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM 295
C ++A+L HGR H VR +V+V S LI MY KCG + +++F+ +K++V
Sbjct: 397 ACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVC 456
Query: 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355
WNS+++G++ +G ++ + +F + + + PD ++ +LSAC G EG + F+ M
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516
Query: 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLA 415
+Y ++P+ EHY+CMV+LLGRAG++++A LI+ MPFEPD+ +WG+LL +CR +DLA
Sbjct: 517 EEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLA 576
Query: 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKK 475
E+AA+KL LEP+N G Y+LLSNIYA++G + +V +R M + K PGCSWI+V+ +
Sbjct: 577 EIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNR 636
Query: 476 VHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEK 535
V+ D SHP+ I +++I +R++G+ P+ F LHDV+E+E+ L HSEK
Sbjct: 637 VYTLLAGD-KSHPQIDQITEKMDEISKEMRKSGHRPNLDFALHDVEEQEQEQMLWGHSEK 695
Query: 536 LAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCS 595
LAV +GL+ P+G P++V+KNLR+CGDCH+ IK IS GREI +RD NRFHHFKDG+CS
Sbjct: 696 LAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGICS 755
Query: 596 CRDYW 600
C D+W
Sbjct: 756 CGDFW 760
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 91/175 (52%)
Query: 180 ARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239
A +V + + ++S +I + + I +F+ M G+ + L ++ VCA
Sbjct: 69 ADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAE 128
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
L++ G+Q+H D+D +V + MY++CG + + +FD + KD+V +++
Sbjct: 129 LSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSAL 188
Query: 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354
+ YA+ G E+ +++ EM SSG+ + V+ G+LS + +G KE +F+ +
Sbjct: 189 LCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI 243
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/593 (39%), Positives = 352/593 (59%), Gaps = 26/593 (4%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV 69
+++ Y G + A +F + EK+VVSW M+ GF++ D A LF M +DV
Sbjct: 170 NSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVK 229
Query: 70 AQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKN 129
A ++G + K + + + Y+ NR++V L
Sbjct: 230 ASHVTMVG------------VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLA------- 270
Query: 130 EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189
AML YT+CG I+DA LF AM K V +M+ G + + + AR V + M +
Sbjct: 271 ----NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQ-KEGVRVNFPSLISVLSVCASLASLDHGRQ 248
KD W+ +I YE+ G E + +F +Q ++ +++N +L+S LS CA + +L+ GR
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGL 308
+H+ + + ++ +V S LI MY KCG+L K + +F++ +D+ +W+++I G A +G
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368
G +++ +F++M + V P+ VT V ACS+TG V E +F M+S Y + P+ +HYA
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 369 CMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428
C+VD+LGR+G +E A+K IEAMP P +WG+LLGAC+ H L+LAE+A +LL+LEP+
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 429 NAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHP 488
N G ++LLSNIYA G++ +V+ELRK+MR + K PGCS IE++ +H F D +HP
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGD-NAHP 625
Query: 489 EHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEE-KVHSLRYHSEKLAVAYGLVKLPE 547
+ L ++ L+ GY P+ S VL ++EEE K SL HSEKLA+ YGL+
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 548 GVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
IRV+KNLRVCGDCHS KLIS++ REII+RD RFHHF++G CSC D+W
Sbjct: 686 PKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738
Score = 142 bits (358), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 177/370 (47%), Gaps = 45/370 (12%)
Query: 82 GRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLF-----EVMPEKNEVSWTAM 136
++ R++FDE+PK N +W T+I Y + ++ F E N+ ++ +
Sbjct: 78 ASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFL 137
Query: 137 LMGYTQCGRIQDAWELFKAMPMKSVVAS-----NSMILGLGQNGEVQKARVVFDQMREKD 191
+ + + L M +KS V S NS+I G++ A VF ++EKD
Sbjct: 138 IKAAAEVSSLSLGQSL-HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196
Query: 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHA 251
+W+ MI + +KG + ++LF M+ E V+ + +++ VLS CA + +L+ GRQV +
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256
Query: 252 QLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD------------------------- 286
+ + +V++ +A+ ++ MY KCG + K +FD
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316
Query: 287 ------NFASKDIVMWNSIISGYAQYGLGEKSLKVFHEM-FSSGVMPDDVTLVGVLSACS 339
+ KDIV WN++IS Y Q G ++L VFHE+ + + +TLV LSAC+
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376
Query: 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIW 399
G ++ GR I +K K+ + + ++ + + G +E + ++ ++ + D +W
Sbjct: 377 QVGALELGRWIHSYIK-KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVW 434
Query: 400 GSLLGACRTH 409
+++G H
Sbjct: 435 SAMIGGLAMH 444
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 150/300 (50%), Gaps = 22/300 (7%)
Query: 170 GLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV----RV 225
L ++ AR VFD++ + + W+ +I+ Y + I F M E +
Sbjct: 73 ALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKY 132
Query: 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIF 285
FP LI A ++SL G+ +H V+ DV+VA+ LI Y CG+L +F
Sbjct: 133 TFPFLI---KAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 286 DNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK 345
KD+V WNS+I+G+ Q G +K+L++F +M S V VT+VGVLSAC+ ++
Sbjct: 190 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE 249
Query: 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
GR++ ++ + T A M+D+ + G +EDA +L +AM E D + W ++L
Sbjct: 250 FGRQVCSYIEENRVNVNLTLANA-MLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDG 307
Query: 406 CRTHMKLDLAEVAAKKLLQLEP-KNAGPYILLSNIYASQGR-------FHDVAELRKNMR 457
+ AA+++L P K+ + L + Y G+ FH++ +L+KNM+
Sbjct: 308 YAISEDYE----AAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHEL-QLQKNMK 362
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 13/228 (5%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
N+ AM+ Y + G I +A LF M EK+ V+WT ML G+ + AR + + MP
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMP-----KKNVISWTTMISGYVNNNRIDVAR 119
+KD+VA ++ Y Q+G+ +E +F E+ K N I+ + +S +++ R
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 120 KLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175
+ + + N +A++ Y++CG ++ + E+F ++ + V ++MI GL +G
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Query: 176 EVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQ 219
+A +F +M+E + T++ + G E LF M+
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 70/178 (39%), Gaps = 8/178 (4%)
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI--KCGELVKGKLIFDNF 288
IS++ C SL L +Q H ++R D Y AS L M L + +FD
Sbjct: 34 ISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI 90
Query: 289 ASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS-SGVMPDDVTLVGVLSACSYTGKVKEG 347
+ WN++I YA S+ F +M S S P+ T ++ A + + G
Sbjct: 91 PKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLG 150
Query: 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ + M K V ++ G ++ A K+ + E D + W S++
Sbjct: 151 QSL-HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK-EKDVVSWNSMING 206
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust.
Identities = 240/608 (39%), Positives = 373/608 (61%), Gaps = 13/608 (2%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
NV +++ Y + G A +F +M +++ SW M+ ++ ++D A F+ M
Sbjct: 180 NVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMA 239
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVIS-----WTTMISGYVNNNRIDVAR 119
E+D+V +M+ G+ Q G +IF +M + +++S +++S N ++ + +
Sbjct: 240 ERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGK 299
Query: 120 KLF-EVMPEKNEVS---WTAMLMGYTQCGRIQDAWELFKAMPMKS--VVASNSMILGLGQ 173
++ ++ ++S A++ Y++CG ++ A L + K + +++ G +
Sbjct: 300 QIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK 359
Query: 174 NGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISV 233
G++ +A+ +F ++++D W+ MI YE+ G E I+LF M G R N +L ++
Sbjct: 360 LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAM 419
Query: 234 LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF-ASKD 292
LSV +SLASL HG+Q+H V+ V V++ LITMY K G + FD +D
Sbjct: 420 LSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERD 479
Query: 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352
V W S+I AQ+G E++L++F M G+ PD +T VGV SAC++ G V +GR+ F+
Sbjct: 480 TVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFD 539
Query: 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKL 412
MK + P HYACMVDL GRAG +++A + IE MP EPD + WGSLL ACR H +
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599
Query: 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEV 472
DL +VAA++LL LEP+N+G Y L+N+Y++ G++ + A++RK+M+ V K G SWIEV
Sbjct: 600 DLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEV 659
Query: 473 EKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYH 532
+ KVH+F D +HPE I ++KI +++ GY PD++ VLHD++EE K LR+H
Sbjct: 660 KHKVHVFGVEDG-THPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHH 718
Query: 533 SEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDG 592
SEKLA+A+GL+ P+ +R+MKNLRVC DCH+AIK ISK++GREII+RD RFHHFKDG
Sbjct: 719 SEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDG 778
Query: 593 LCSCRDYW 600
CSCRDYW
Sbjct: 779 FCSCRDYW 786
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 111/437 (25%), Positives = 208/437 (47%), Gaps = 45/437 (10%)
Query: 16 YVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMV 75
Y + G A LF +MP + SW +L + + +D FD +P++D V+ T M+
Sbjct: 59 YSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMI 118
Query: 76 LGYCQDGRVDEGREIFDEMPKKNV----ISWTTMISGYVNNNRIDVARKLFEVMPE---K 128
+GY G+ + + +M K+ + + T +++ ++ +K+ + + +
Sbjct: 119 VGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLR 178
Query: 129 NEVSWTAMLMG-YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQM 187
VS + L+ Y +CG A +F M ++ + + N+MI Q G++ A F+QM
Sbjct: 179 GNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238
Query: 188 REKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG-VRVNFPSLISVLSVCASLASLDHG 246
E+D TW+ MI + ++GY+L +D+F+ M ++ + + +L SVLS CA+L L G
Sbjct: 239 AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIG 298
Query: 247 RQVHAQLVRCQFDVDVYVASVLITMYIKC------------------------------- 275
+Q+H+ +V FD+ V + LI+MY +C
Sbjct: 299 KQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYI 358
Query: 276 --GELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333
G++ + K IF + +D+V W ++I GY Q+G +++ +F M G P+ TL
Sbjct: 359 KLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAA 418
Query: 334 VLSACSYTGKVKEGREIFES-MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPF 392
+LS S + G++I S +KS + + ++ + +AG + A + + +
Sbjct: 419 MLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSN--ALITMYAKAGNITSASRAFDLIRC 476
Query: 393 EPDAIIWGSLLGACRTH 409
E D + W S++ A H
Sbjct: 477 ERDTVSWTSMIIALAQH 493
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 152/323 (47%), Gaps = 38/323 (11%)
Query: 103 TTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG-----YTQCGRIQDAWELFKAMP 157
T ++ VN + +L K+ + ++ LM Y++ G A +LF MP
Sbjct: 17 TNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMP 76
Query: 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTL 217
+++ + N+++ + G++ FDQ+ ++D +W+ MI Y+ G + I +
Sbjct: 77 LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136
Query: 218 MQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE 277
M KEG+ +L +VL+ A+ ++ G++VH+ +V+ +V V++ L+ MY KCG+
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196
Query: 278 LVKGKLIFD-------------------------------NFASKDIVMWNSIISGYAQY 306
+ K +FD A +DIV WNS+ISG+ Q
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 307 GLGEKSLKVFHEMFSSGVM-PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE 365
G ++L +F +M ++ PD TL VLSAC+ K+ G++I + + +
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGF-DISGI 315
Query: 366 HYACMVDLLGRAGQVEDAMKLIE 388
++ + R G VE A +LIE
Sbjct: 316 VLNALISMYSRCGGVETARRLIE 338
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV----VSWTVMLGGFIRDSRIDDARR 58
ER+ VSWT+M+ + G EA LF M + + +++ + ++ R+
Sbjct: 477 ERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQ 536
Query: 59 LFDMMPEKDVVAQT-----NMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISGYVNN 112
FDMM + D + T MV + + G + E +E ++MP + +V++W +++S +
Sbjct: 537 YFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVH 596
Query: 113 NRIDV----ARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM 156
ID+ A +L + PE N +++A+ Y+ CG+ ++A ++ K+M
Sbjct: 597 KNIDLGKVAAERLLLLEPE-NSGAYSALANLYSACGKWEEAAKIRKSM 643
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/679 (34%), Positives = 378/679 (55%), Gaps = 81/679 (11%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
+P+ N+ SW ++ Y + G+I+E + F ++P+++ V+W V++ G+ + A + +
Sbjct: 67 IPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAY 126
Query: 61 DMMP----------------------------------------EKDVVAQTNMVLGYCQ 80
+ M E ++ + ++ Y
Sbjct: 127 NTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYAN 186
Query: 81 DGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGY 140
G + + +++F + +N + + +++ G + I+ A +LF M EK+ VSW AM+ G
Sbjct: 187 VGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGL 245
Query: 141 TQCGRIQDAWELFKAM----------PMKSVVASNSMILGLGQNGEVQK----------- 179
Q G ++A E F+ M P SV+ + + + + ++
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305
Query: 180 ------------------ARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
A+ VFD+M++K+ +W+ M+ Y + G E + +F MQ+
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRS 365
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281
G+ + +L +S CA+++SL+ G Q H + + V V++ L+T+Y KCG++
Sbjct: 366 GIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341
+F+ +D V W +++S YAQ+G +++++F +M G+ PD VTL GV+SACS
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRA 485
Query: 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401
G V++G+ F+ M S+Y + P HY+CM+DL R+G++E+AM+ I MPF PDAI W +
Sbjct: 486 GLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTT 545
Query: 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461
LL ACR L++ + AA+ L++L+P + Y LLS+IYAS+G++ VA+LR+ MR++NV
Sbjct: 546 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNV 605
Query: 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVD 521
K PG SWI+ + K+H F+ D S P I LE++ + + GY PD+SFV HDV+
Sbjct: 606 KKEPGQSWIKWKGKLHSFSADD-ESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664
Query: 522 EEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILR 581
E KV L YHSE+LA+A+GL+ +P G PIRV KNLRVC DCH+A K IS V GREI++R
Sbjct: 665 EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVR 724
Query: 582 DANRFHHFKDGLCSCRDYW 600
DA RFH FKDG CSC D+W
Sbjct: 725 DAVRFHRFKDGTCSCGDFW 743
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 109/390 (27%), Positives = 190/390 (48%), Gaps = 43/390 (11%)
Query: 56 ARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRI 115
ARR+FD +P+ ++ + N++L Y + G + E F+++P ++ ++W +I GY + +
Sbjct: 60 ARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLV 119
Query: 116 DVARKLFEVMPEKNEVSWT----------------------------------------A 135
A K + M + T
Sbjct: 120 GAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 179
Query: 136 MLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATW 195
+L Y G I DA ++F + ++ V NS++ GL G ++ A +F M EKD +W
Sbjct: 180 LLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSW 238
Query: 196 SGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
+ MIK + G E I+ F M+ +G++++ SVL C L +++ G+Q+HA ++R
Sbjct: 239 AAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIR 298
Query: 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKV 315
F +YV S LI MY KC L K +FD K++V W +++ GY Q G E+++K+
Sbjct: 299 TNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKI 358
Query: 316 FHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375
F +M SG+ PD TL +SAC+ ++EG + + L+ T + +V L G
Sbjct: 359 FLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNS-LVTLYG 417
Query: 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ G ++D+ +L M DA+ W +++ A
Sbjct: 418 KCGDIDDSTRLFNEMNVR-DAVSWTAMVSA 446
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/447 (20%), Positives = 165/447 (36%), Gaps = 112/447 (25%)
Query: 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQD 148
I +P + ++ Y AR++F+ +P+ N SW +L+ Y++ G I +
Sbjct: 31 NIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISE 90
Query: 149 AWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYE 208
F+ +P ++D TW+ +I+ Y G
Sbjct: 91 MESTFEKLP-------------------------------DRDGVTWNVLIEGYSLSGLV 119
Query: 209 LEVIDLF-TLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV 267
+ + T+M+ + +L+++L + +S + G+Q+H Q+++ F+ + V S
Sbjct: 120 GAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSP 179
Query: 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSI---------------------------- 299
L+ MY G + K +F ++ VM+NS+
Sbjct: 180 LLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWA 239
Query: 300 --ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI------- 350
I G AQ GL +++++ F EM G+ D VL AC G + EG++I
Sbjct: 240 AMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT 299
Query: 351 ----------------------------FESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382
F+ MK K +V + MV G+ G+ E+
Sbjct: 300 NFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS-----WTAMVVGYGQTGRAEE 354
Query: 383 AMKLIEAMP---FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN- 438
A+K+ M +PD G + AC L+ K + Y+ +SN
Sbjct: 355 AVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAIT---SGLIHYVTVSNS 411
Query: 439 ---IYASQGRFHDVAELRKNMRKRNVI 462
+Y G D L M R+ +
Sbjct: 412 LVTLYGKCGDIDDSTRLFNEMNVRDAV 438
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/231 (18%), Positives = 86/231 (37%), Gaps = 13/231 (5%)
Query: 237 CASLASLDHGRQV---HAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI 293
C L + + R V H ++R + ++ + ++ Y + +FD ++
Sbjct: 13 CIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNL 72
Query: 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353
WN+++ Y++ GL + F ++ D VT ++ S +G V + + +
Sbjct: 73 FSWNNLLLAYSKAGLISEMESTFEKLPDR----DGVTWNVLIEGYSLSGLVGAAVKAYNT 128
Query: 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL---IEAMPFEPDAIIWGSLLGACRTHM 410
M + M+ L G V ++ + + FE ++ LL +
Sbjct: 129 MMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLL---YMYA 185
Query: 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461
+ A K L+ +N Y L + G D +L + M K +V
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSV 236
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/621 (36%), Positives = 362/621 (58%), Gaps = 26/621 (4%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIR------DSRID 54
+PE++ V++ ++ GY ++G+ TE+ LF +M + G ++ D +
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269
Query: 55 DARRLFDMMP--EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ +D ++ Y + RV E R +FDEMP+ + +S+ +IS Y
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 113 NRIDVARKLFEVMP----EKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMI 168
++ + + F M ++ + ML +Q + + + ++++A+ I
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQ----MGRQLHCQALLATADSI 385
Query: 169 LGLGQN--------GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220
L +G + ++A ++F + ++ +W+ +I Y +KG + LFT M+
Sbjct: 386 LHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG 445
Query: 221 EGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280
+R + + +VL AS ASL G+Q+HA ++R +V+ S L+ MY KCG +
Sbjct: 446 SNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKD 505
Query: 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340
+F+ ++ V WN++IS +A G GE ++ F +M SG+ PD V+++GVL+ACS+
Sbjct: 506 AVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSH 565
Query: 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWG 400
G V++G E F++M Y + PK +HYACM+DLLGR G+ +A KL++ MPFEPD I+W
Sbjct: 566 CGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWS 625
Query: 401 SLLGACRTHMKLDLAEVAAKKLLQLEP-KNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459
S+L ACR H LAE AA+KL +E ++A Y+ +SNIYA+ G + V +++K MR+R
Sbjct: 626 SVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRER 685
Query: 460 NVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHD 519
+ K P SW+EV K+H+F+ D +HP I+R + ++ + GY PD+S V+ D
Sbjct: 686 GIKKVPAYSWVEVNHKIHVFSSND-QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQD 744
Query: 520 VDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREII 579
VDE+ K+ SL+YHSE+LAVA+ L+ PEG PI VMKNLR C DCH+AIKLISK++ REI
Sbjct: 745 VDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREIT 804
Query: 580 LRDANRFHHFKDGLCSCRDYW 600
+RD +RFHHF +G+CSC DYW
Sbjct: 805 VRDTSRFHHFSEGVCSCGDYW 825
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/460 (28%), Positives = 218/460 (47%), Gaps = 61/460 (13%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP +N VS M+ G+V+ G ++ A LF MP++ VV+WT+++G + R+S D+A +LF
Sbjct: 74 MPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLF 133
Query: 61 DMMPEK------DVVAQTNMVLGYCQDGRVDEG---------REIFDEMPKKNVISWTTM 105
M D V T ++ G C D + FD P V + +
Sbjct: 134 RQMCRSSSCTLPDHVTFTTLLPG-CNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSN--VL 190
Query: 106 ISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP-------- 157
+ Y R+D+A LFE +PEK+ V++ ++ GY + G ++ LF M
Sbjct: 191 LKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSD 250
Query: 158 ------MKSVVASNSMILG-------------------------LGQNGEVQKARVVFDQ 186
+K+VV + LG ++ V + R++FD+
Sbjct: 251 FTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDE 310
Query: 187 MREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV-RVNFPSLISVLSVCASLASLDH 245
M E D +++ +I Y + + F MQ G R NFP ++LS+ A+L+SL
Sbjct: 311 MPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFP-FATMLSIAANLSSLQM 369
Query: 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQ 305
GRQ+H Q + D ++V + L+ MY KC + +LIF + + V W ++ISGY Q
Sbjct: 370 GRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQ 429
Query: 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE 365
GL LK+F +M S + D T VL A + + G+++ + +E
Sbjct: 430 KGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE-NVF 488
Query: 366 HYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ +VD+ + G ++DA+++ E MP + +A+ W +L+ A
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISA 527
Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/373 (26%), Positives = 177/373 (47%), Gaps = 20/373 (5%)
Query: 47 FIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMI 106
+R ++ AR+++D MP K+ V+ M+ G+ + G V R++FD MP + V++WT ++
Sbjct: 58 LLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILM 117
Query: 107 SGYVNNNRIDVARKLFEVMPEK------NEVSWTAMLMGYTQC------GRIQD-AWEL- 152
Y N+ D A KLF M + V++T +L G G++ A +L
Sbjct: 118 GWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLG 177
Query: 153 FKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVI 212
F P +V SN ++ + + A V+F+++ EKD T++ +I YE+ G E I
Sbjct: 178 FDTNPFLTV--SNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESI 235
Query: 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272
LF M++ G + + + VL L G+Q+HA V F D V + ++ Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295
Query: 273 IKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV 332
K +++ +++FD D V +N +IS Y+Q E SL F EM G +
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355
Query: 333 GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA-CMVDLLGRAGQVEDAMKLIEAMP 391
+LS + ++ GR++ ++ H +VD+ + E+A + +++P
Sbjct: 356 TMLSIAANLSSLQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP 413
Query: 392 FEPDAIIWGSLLG 404
+ + W +L+
Sbjct: 414 -QRTTVSWTALIS 425
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 45/173 (26%)
Query: 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNS 298
S A+ R+V A++++ FD D ++ ++ ++ G++ + ++D K+ V N+
Sbjct: 25 SPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNT 84
Query: 299 IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY 358
+ISG+ + TG V R++F++M +
Sbjct: 85 MISGHVK-----------------------------------TGDVSSARDLFDAMPDRT 109
Query: 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE-----PDAIIWGSLLGAC 406
+V + ++ R ++A KL M PD + + +LL C
Sbjct: 110 VVT-----WTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/589 (37%), Positives = 354/589 (60%), Gaps = 10/589 (1%)
Query: 21 MITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK-DVVAQTNMVLGYC 79
++ A +F ++ EK+ SWT M+ G++++ D L + M + +VA M+ GY
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYV 262
Query: 80 QDGRVDEGREIFDEMPKKNV----ISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW-- 133
G E E+ M + ++ ++I + + +++ + + + S+
Sbjct: 263 NRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHF 322
Query: 134 -TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192
+++ Y +CG+ +A +F+ MP K +V+ N+++ G +G + +A+++F +M+EK+
Sbjct: 323 DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI 382
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252
+W MI G+ E + LF+ M++EG + + CA L + +G+Q HAQ
Sbjct: 383 LSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQ 442
Query: 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKS 312
L++ FD + + LITMY KCG + + + +F D V WN++I+ Q+G G ++
Sbjct: 443 LLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEA 502
Query: 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372
+ V+ EM G+ PD +TL+ VL+ACS+ G V +GR+ F+SM++ Y + P +HYA ++D
Sbjct: 503 VDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLID 562
Query: 373 LLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432
LL R+G+ DA +IE++PF+P A IW +LL CR H ++L +AA KL L P++ G
Sbjct: 563 LLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGT 622
Query: 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPM 492
Y+LLSN++A+ G++ +VA +RK MR R V K CSWIE+E +VH F D SHPE
Sbjct: 623 YMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDD-TSHPEAEA 681
Query: 493 IMRMLEKIGGLLREAGYCPDSSFVLHDVDEE-EKVHSLRYHSEKLAVAYGLVKLPEGVPI 551
+ L+ +G +R GY PD+SFVLHDV+ + K L HSEK+AVA+GL+KLP G I
Sbjct: 682 VYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTI 741
Query: 552 RVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
R+ KNLR CGDCH+ + +S V+ R+IILRD RFHHF++G CSC ++W
Sbjct: 742 RIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/441 (24%), Positives = 196/441 (44%), Gaps = 81/441 (18%)
Query: 47 FIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP--KKNVISWTT 104
+ + S ++ AR+LFD + E D +A+T MV GYC G + R +F++ P ++ + +
Sbjct: 59 YCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNA 118
Query: 105 MISGYVNNNRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKS 160
MI+G+ +NN A LF M + + ++ ++L G + F A +KS
Sbjct: 119 MITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKS 178
Query: 161 -----VVASNSMILGLGQNGE----VQKARVVFDQMREKDDATWSGMIKVYERKGY---- 207
SN+++ + + AR VFD++ EKD+ +W+ M+ Y + GY
Sbjct: 179 GAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLG 238
Query: 208 -EL---------------------------EVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239
EL E +++ M G+ ++ + SV+ CA+
Sbjct: 239 EELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACAT 298
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
L G+QVHA ++R + D + + L+++Y KCG+ + + IF+ +KD+V WN++
Sbjct: 299 AGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNAL 357
Query: 300 ISGY-------------------------------AQYGLGEKSLKVFHEMFSSGVMPDD 328
+SGY A+ G GE+ LK+F M G P D
Sbjct: 358 LSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCD 417
Query: 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388
G + +C+ G G++ + + K + ++ + + G VE+A ++
Sbjct: 418 YAFSGAIKSCAVLGAYCNGQQ-YHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476
Query: 389 AMPFEPDAIIWGSLLGACRTH 409
MP D++ W +L+ A H
Sbjct: 477 TMPC-LDSVSWNALIAALGQH 496
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 101/438 (23%), Positives = 192/438 (43%), Gaps = 87/438 (19%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK-NVVSWTVMLGGFIRDSRIDDA----R 57
E++ SWT M+ GYV+ G L M + +V++ M+ G++ +A R
Sbjct: 216 EKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275
Query: 58 RLFDMMPEKDVVAQTNMV----------LG------------------------YCQDGR 83
R+ E D +++ LG Y + G+
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGK 335
Query: 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQC 143
DE R IF++MP K+++SW ++SGYV++ I A+ +F+ M EKN +SW M+ G +
Sbjct: 336 FDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAEN 395
Query: 144 GRIQDAWELFKAMPMK---------------------------------------SVVAS 164
G ++ +LF M + S+ A
Sbjct: 396 GFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAG 455
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
N++I + G V++AR VF M D +W+ +I + G+ E +D++ M K+G+R
Sbjct: 456 NALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIR 515
Query: 225 VNFPSLISVLSVCASLASLDHGRQVHAQL---VRCQFDVDVYVASVLITMYIKCGELVKG 281
+ +L++VL+ C+ +D GR+ + R D Y + LI + + G+
Sbjct: 516 PDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY--ARLIDLLCRSGKFSDA 573
Query: 282 KLIFDNFASKDIV-MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACS 339
+ + ++ K +W +++SG +G E + ++F G++P+ D T + + + +
Sbjct: 574 ESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--GLIPEHDGTYMLLSNMHA 631
Query: 340 YTGKVKEGREIFESMKSK 357
TG+ +E + + M+ +
Sbjct: 632 ATGQWEEVARVRKLMRDR 649
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 164/329 (49%), Gaps = 29/329 (8%)
Query: 91 FDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAW 150
F P+ ++++ +I Y ++ ++ AR+LF+ + E ++++ T M+ GY G I A
Sbjct: 43 FGFQPRAHILN--RLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLAR 100
Query: 151 ELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATW----SGMIK 200
+F+ P M+ V N+MI G N + A +F +M+ + D+ T+ +G+
Sbjct: 101 GVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLAL 160
Query: 201 VYERKGYELEVIDLFTLMQKEG---VRVNFPSLISVLSVCASLASLDH-GRQVHAQLVRC 256
V + E + + K G + +L+SV S CAS SL H R+V +++
Sbjct: 161 VADD---EKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEIL-- 215
Query: 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-DIVMWNSIISGYAQYGLGEKSLKV 315
+ D + ++T Y+K G G+ + + +V +N++ISGY G +++L++
Sbjct: 216 --EKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEM 273
Query: 316 FHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY-ACMVDLL 374
M SSG+ D+ T V+ AC+ G ++ G+++ + + E + H+ +V L
Sbjct: 274 VRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR---EDFSFHFDNSLVSLY 330
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
+ G+ ++A + E MP D + W +LL
Sbjct: 331 YKCGKFDEARAIFEKMP-AKDLVSWNALL 358
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 35/139 (25%)
Query: 234 LSVCASL--ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS- 290
L +C L SL R VH ++ F ++ + LI +Y K EL + +FD +
Sbjct: 19 LRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP 78
Query: 291 --------------------------------KDIVMWNSIISGYAQYGLGEKSLKVFHE 318
+D VM+N++I+G++ G ++ +F +
Sbjct: 79 DKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCK 138
Query: 319 MFSSGVMPDDVTLVGVLSA 337
M G PD+ T VL+
Sbjct: 139 MKHEGFKPDNFTFASVLAG 157
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/621 (38%), Positives = 365/621 (58%), Gaps = 26/621 (4%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFIRDSRIDDA 56
M ER+V+SW +++ GYV G+ + ++F QM E ++ + + G DSR+
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG-CADSRLISL 314
Query: 57 RRLFDMMPEKDVVAQ----TNMVLG-YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
R + K ++ N +L Y + G +D + +F EM ++V+S+T+MI+GY
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374
Query: 112 NNRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRI------QDAWELFKAMPMK-S 160
A KLFE M E+ + + TA+L C R + E K +
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVL---NCCARYRLLDEGKRVHEWIKENDLGFD 431
Query: 161 VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220
+ SN+++ + G +Q+A +VF +MR KD +W+ +I Y + Y E + LF L+ +
Sbjct: 432 IFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLE 491
Query: 221 EG-VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279
E + ++ VL CASL++ D GR++H ++R + D +VA+ L+ MY KCG L+
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551
Query: 280 KGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339
++FD+ ASKD+V W +I+GY +G G++++ +F++M +G+ D+++ V +L ACS
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611
Query: 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIW 399
++G V EG F M+ + +EP EHYAC+VD+L R G + A + IE MP PDA IW
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671
Query: 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459
G+LL CR H + LAE A+K+ +LEP+N G Y+L++NIYA ++ V LRK + +R
Sbjct: 672 GALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQR 731
Query: 460 NVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHD 519
+ K PGCSWIE++ +V++F D S+PE I L K+ + E GY P + + L D
Sbjct: 732 GLRKNPGCSWIEIKGRVNIFVAGDS-SNPETENIEAFLRKVRARMIEEGYSPLTKYALID 790
Query: 520 VDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREII 579
+E EK +L HSEKLA+A G++ G IRV KNLRVCGDCH K +SK+ REI+
Sbjct: 791 AEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIV 850
Query: 580 LRDANRFHHFKDGLCSCRDYW 600
LRD+NRFH FKDG CSCR +W
Sbjct: 851 LRDSNRFHQFKDGHCSCRGFW 871
Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/452 (23%), Positives = 203/452 (44%), Gaps = 34/452 (7%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLF-----WQMPEKNVVSWTVMLGGFIRDSR-IDDA 56
+R+V +R + E G + A L W + + + S + DS+ + D
Sbjct: 58 DRSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCA----DSKSLKDG 113
Query: 57 RRLFDMMPEKDVVAQTNM----VLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ + + + V +N+ L Y G + E +FDE+ + + W +++ +
Sbjct: 114 KEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKS 173
Query: 113 NRIDVARKLFEVM----PEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVAS 164
+ LF+ M E + +++ + ++ + +L K+ +
Sbjct: 174 GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG 233
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
NS++ +N V AR VFD+M E+D +W+ +I Y G + + +F M G+
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Query: 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284
++ +++SV + CA + GR VH+ V+ F + + L+ MY KCG+L K +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353
Query: 285 FDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344
F + + +V + S+I+GYA+ GL +++K+F EM G+ PD T+ VL+ C+ +
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
Query: 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404
EG+ + E +K L A M D+ + G +++A + M + D I W +++G
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALM-DMYAKCGSMQEAELVFSEMRVK-DIISWNTIIG 471
Query: 405 A----CRTHMKLDLAEVAAKKLLQLEPKNAGP 432
C + L L L LE K P
Sbjct: 472 GYSKNCYANEALSLFN------LLLEEKRFSP 497
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 232/617 (37%), Positives = 363/617 (58%), Gaps = 21/617 (3%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVML------GGFIRDSRID 54
MP R++ SW AM+ GY + G EA TL + + V+ +L G F R I
Sbjct: 211 MPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIH 270
Query: 55 DARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114
+ E ++ ++ Y + GR+ + +++FD M +++ISW ++I Y N +
Sbjct: 271 SYSIKHGL--ESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 328
Query: 115 IDVARKLFEVM------PE-KNEVSWTAML--MGYTQCGRIQDAWELFKAMPMKSVVASN 165
A LF+ M P+ +S ++L +G + R + L K ++ + N
Sbjct: 329 PLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGN 388
Query: 166 SMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG-VR 224
++++ + G V AR VF+ + D +W+ +I Y + G+ E I+++ +M++EG +
Sbjct: 389 AVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIA 448
Query: 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284
N + +SVL C+ +L G ++H +L++ +DV+V + L MY KCG L +
Sbjct: 449 ANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSL 508
Query: 285 FDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344
F + V WN++I+ + +G GEK++ +F EM GV PD +T V +LSACS++G V
Sbjct: 509 FYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLV 568
Query: 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404
EG+ FE M++ Y + P +HY CMVD+ GRAGQ+E A+K I++M +PDA IWG+LL
Sbjct: 569 DEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLS 628
Query: 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKP 464
ACR H +DL ++A++ L ++EP++ G ++LLSN+YAS G++ V E+R + + K
Sbjct: 629 ACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKT 688
Query: 465 PGCSWIEVEKKVHMF-TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEE 523
PG S +EV+ KV +F TG +HP + + R L + L+ GY PD FVL DV+++
Sbjct: 689 PGWSSMEVDNKVEVFYTGNQ--THPMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDD 746
Query: 524 EKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDA 583
EK H L HSE+LA+A+ L+ P IR+ KNLRVCGDCHS K ISK+ REII+RD+
Sbjct: 747 EKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDS 806
Query: 584 NRFHHFKDGLCSCRDYW 600
NRFHHFK+G+CSC DYW
Sbjct: 807 NRFHHFKNGVCSCGDYW 823
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 114/479 (23%), Positives = 211/479 (44%), Gaps = 47/479 (9%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM 63
+NV +V Y G + A F + ++V +W +M+ G+ R + R F +
Sbjct: 84 QNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 143
Query: 64 -------PEK------------------------------DVVAQTNMVLGYCQDGRVDE 86
P+ DV +++ Y + V
Sbjct: 144 MLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGN 203
Query: 87 GREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRI 146
R +FDEMP +++ SW MISGY + A L + + V+ ++L T+ G
Sbjct: 204 ARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDF 263
Query: 147 QDAWEL----FKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVY 202
+ K + SN +I + G ++ + VFD+M +D +W+ +IK Y
Sbjct: 264 NRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAY 323
Query: 203 ERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHA-QLVRCQFDVD 261
E L I LF M+ ++ + +LIS+ S+ + L + R V L + F D
Sbjct: 324 ELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLED 383
Query: 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321
+ + + ++ MY K G + + +F+ + D++ WN+IISGYAQ G +++++++ M
Sbjct: 384 ITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEE 443
Query: 322 SG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV 380
G + + T V VL ACS G +++G ++ + L + D+ G+ G++
Sbjct: 444 EGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLY-LDVFVVTSLADMYGKCGRL 502
Query: 381 EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ--LEPKNAGPYILLS 437
EDA+ L +P +++ W +L+ H + A + K++L ++P + LLS
Sbjct: 503 EDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 10/179 (5%)
Query: 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK 291
++ C +L S + +HA+LV + +V +++ L+ +Y G + + FD+ ++
Sbjct: 59 TLFRYCTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR 115
Query: 292 DIVMWNSIISGYAQYGLGEKSLKVFHE-MFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
D+ WN +ISGY + G + ++ F M SSG+ PD T VL AC V +G +I
Sbjct: 116 DVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKI 172
Query: 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL-GACRT 408
+ K+ A ++ L R V +A L + MP D W +++ G C++
Sbjct: 173 -HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQS 229
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 429 bits (1102), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/573 (38%), Positives = 338/573 (58%), Gaps = 10/573 (1%)
Query: 37 VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK 96
+V W +L + + + DAR++FD MP +D+ + MV GY + G ++E R++FDEM +
Sbjct: 120 IVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTE 179
Query: 97 KNVISWTTMISGYVNNNRIDVARKLFEVM-------PEKNEVSWTAMLMGYTQCGR--IQ 147
K+ SWT M++GYV ++ + A L+ +M P VS +C R +
Sbjct: 180 KDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKE 239
Query: 148 DAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGY 207
+ +A V +S++ G+ G + +AR +FD++ EKD +W+ MI Y +
Sbjct: 240 IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSR 299
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV 267
E LF+ + R N + VL+ CA L + + G+QVH + R FD + +S
Sbjct: 300 WREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSS 359
Query: 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327
L+ MY KCG + K + D D+V W S+I G AQ G +++LK F + SG PD
Sbjct: 360 LVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419
Query: 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387
VT V VLSAC++ G V++G E F S+ K+ + ++HY C+VDLL R+G+ E +I
Sbjct: 420 HVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVI 479
Query: 388 EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447
MP +P +W S+LG C T+ +DLAE AA++L ++EP+N Y+ ++NIYA+ G++
Sbjct: 480 SEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWE 539
Query: 448 DVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREA 507
+ ++RK M++ V K PG SW E+++K H+F D SHP + I+ L ++ ++E
Sbjct: 540 EEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAAD-TSHPMYNQIVEFLRELRKKMKEE 598
Query: 508 GYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAI 567
GY P +S VLHDV++E+K +L YHSEKLAVA+ ++ EG I+V KNLR C DCH AI
Sbjct: 599 GYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAI 658
Query: 568 KLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
K IS + R+I +RD+ RFH F++G CSC DYW
Sbjct: 659 KFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/399 (23%), Positives = 174/399 (43%), Gaps = 57/399 (14%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP R++ SW MV GY E G++ EA LF +M EK+ SWT M+ G+++ + ++A L+
Sbjct: 146 MPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLY 205
Query: 61 DMMP----------------------------------------EKDVVAQTNMVLGYCQ 80
+M + D V ++++ Y +
Sbjct: 206 SLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGK 265
Query: 81 DGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM----PEKNEVSWTAM 136
G +DE R IFD++ +K+V+SWT+MI Y ++R LF + NE ++ +
Sbjct: 266 CGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGV 325
Query: 137 LMGYTQCGRIQDAWELFKAMPMKSV----VASNSMILGLGQNGEVQKARVVFDQMREKDD 192
L + ++ M AS+S++ + G ++ A+ V D + D
Sbjct: 326 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDL 385
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252
+W+ +I + G E + F L+ K G + + + ++VLS C ++ G +
Sbjct: 386 VSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYS 445
Query: 253 LV---RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-DIVMWNSIISGYAQYGL 308
+ R D Y + L+ + + G + K + K +W S++ G + YG
Sbjct: 446 ITEKHRLSHTSDHY--TCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGN 503
Query: 309 GEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKE 346
+ + + E+F + P++ VT V + + + GK +E
Sbjct: 504 IDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEE 540
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 56/91 (61%)
Query: 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288
+ +++ VC+ +L+ G++VH + F + + + L+ MY KCG LV + +FD
Sbjct: 87 TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146
Query: 289 ASKDIVMWNSIISGYAQYGLGEKSLKVFHEM 319
++D+ WN +++GYA+ GL E++ K+F EM
Sbjct: 147 PNRDLCSWNVMVNGYAEVGLLEEARKLFDEM 177
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 5/135 (3%)
Query: 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368
G+K L+ ++ P T ++ CS T ++EG+++ E +++ V P +
Sbjct: 66 GQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFV-PGIVIWN 124
Query: 369 CMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428
++ + + G + DA K+ + MP D W ++ + ++ L E A K ++ K
Sbjct: 125 RLLRMYAKCGSLVDARKVFDEMP-NRDLCSWNVMVNG---YAEVGLLEEARKLFDEMTEK 180
Query: 429 NAGPYILLSNIYASQ 443
++ + + Y +
Sbjct: 181 DSYSWTAMVTGYVKK 195
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/647 (36%), Positives = 367/647 (56%), Gaps = 50/647 (7%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPE----KNVVSWTVMLGGFIRDSRIDDARR 58
E N++ W M RG+ A L+ M N ++ +L + + ++
Sbjct: 96 EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 155
Query: 59 L----FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114
+ + + D+ T+++ Y Q+GR+++ ++FD+ P ++V+S+T +I GY +
Sbjct: 156 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 215
Query: 115 IDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMIL----- 169
I+ A+KLF+ +P K+ VSW AM+ GY + G ++A ELFK M +V S ++
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 170 --------------------GLGQN--------------GEVQKARVVFDQMREKDDATW 195
G G N GE++ A +F+++ KD +W
Sbjct: 276 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 335
Query: 196 SGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
+ +I Y E + LF M + G N +++S+L CA L ++D GR +H + +
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK 395
Query: 256 CQFDVD--VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313
V + + LI MY KCG++ +F++ K + WN++I G+A +G + S
Sbjct: 396 RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASF 455
Query: 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373
+F M G+ PDD+T VG+LSACS++G + GR IF +M Y + PK EHY CM+DL
Sbjct: 456 DLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDL 515
Query: 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433
LG +G ++A ++I M EPD +IW SLL AC+ H ++L E A+ L+++EP+N G Y
Sbjct: 516 LGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSY 575
Query: 434 ILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMI 493
+LLSNIYAS GR+++VA+ R + + + K PGCS IE++ VH F D HP + I
Sbjct: 576 VLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF-HPRNREI 634
Query: 494 MRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRV 553
MLE++ LL +AG+ PD+S VL +++EE K +LR+HSEKLA+A+GL+ G + +
Sbjct: 635 YGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTI 694
Query: 554 MKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
+KNLRVC +CH A KLISK+ REII RD RFHHF+DG+CSC DYW
Sbjct: 695 VKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/364 (26%), Positives = 173/364 (47%), Gaps = 41/364 (11%)
Query: 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM------PEKNEVSW---------- 133
+F + + N++ W TM G+ ++ A KL+ M P +
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 134 -----------------------TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILG 170
T+++ Y Q GR++DA ++F P + VV+ ++I G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSL 230
G ++ A+ +FD++ KD +W+ MI Y G E ++LF M K VR + ++
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290
++V+S CA S++ GRQVH + F ++ + + LI +Y KCGEL +F+
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329
Query: 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
KD++ WN++I GY L +++L +F EM SG P+DVT++ +L AC++ G + GR I
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389
Query: 351 FESMKSKYL-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
+ + V + ++D+ + G +E A ++ ++ W +++ H
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSI-LHKSLSSWNAMIFGFAMH 448
Query: 410 MKLD 413
+ D
Sbjct: 449 GRAD 452
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 49/297 (16%)
Query: 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF- 60
P R+VVS+TA+++GY G I A LF ++P K+VVSW M+ G+ +A LF
Sbjct: 196 PHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFK 255
Query: 61 DMMPEK---DVVAQTNMVLGYCQDGRVDEGREI--------------------------- 90
DMM D +V Q G ++ GR++
Sbjct: 256 DMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315
Query: 91 --------FDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM----PEKNEVSWTAMLM 138
F+ +P K+VISW T+I GY + N A LF+ M N+V+ ++L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 139 GYTQCGRIQ-DAW-ELFKAMPMKSVVASNSMILGL----GQNGEVQKARVVFDQMREKDD 192
G I W ++ +K V ++S+ L + G+++ A VF+ + K
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQV 249
++W+ MI + G DLF+ M+K G++ + + + +LS C+ LD GR +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 229/614 (37%), Positives = 362/614 (58%), Gaps = 20/614 (3%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMP------EKNVVSWTVMLGGFIRDSRIDDAR 57
++VV+W +M+ GY G+ EA +F+ M ++ + + L +++ R +
Sbjct: 258 KSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQL 317
Query: 58 RL----FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISGYVNN 112
+ + ++++ +T +++ Y + + + +F E+ NV+SWT MISG++ N
Sbjct: 318 HCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQN 375
Query: 113 NRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMI 168
+ + A LF M K NE +++ +L + ++ K +S +++
Sbjct: 376 DGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALL 435
Query: 169 LGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP 228
+ G+V++A VF + +KD WS M+ Y + G I +F + K G++ N
Sbjct: 436 DAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEF 495
Query: 229 SLISVLSVCASL-ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN 287
+ S+L+VCA+ AS+ G+Q H ++ + D + V+S L+TMY K G + + +F
Sbjct: 496 TFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKR 555
Query: 288 FASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347
KD+V WNS+ISGYAQ+G K+L VF EM V D VT +GV +AC++ G V+EG
Sbjct: 556 QREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEG 615
Query: 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407
+ F+ M + P EH +CMVDL RAGQ+E AMK+IE MP + IW ++L ACR
Sbjct: 616 EKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACR 675
Query: 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGC 467
H K +L +AA+K++ ++P+++ Y+LLSN+YA G + + A++RK M +RNV K PG
Sbjct: 676 VHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGY 735
Query: 468 SWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVH 527
SWIEV+ K + F D SHP I LE + L++ GY PD+S+VL D+D+E K
Sbjct: 736 SWIEVKNKTYSFLAGD-RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEA 794
Query: 528 SLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFH 587
L HSE+LA+A+GL+ P+G P+ ++KNLRVCGDCH IKLI+K+ REI++RD+NRFH
Sbjct: 795 VLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFH 854
Query: 588 HF-KDGLCSCRDYW 600
HF DG+CSC D+W
Sbjct: 855 HFSSDGVCSCGDFW 868
Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 202/439 (46%), Gaps = 54/439 (12%)
Query: 15 GYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--------- 65
G V + A LF + P ++ S+ +L GF RD R +A+RLF +
Sbjct: 36 GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95
Query: 66 ------------------------------KDVVAQTNMVLGYCQDGRVDEGREIFDEMP 95
DV T++V Y + +GR++FDEM
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 96 KKNVISWTTMISGYVNNNRIDVARKLFEVM----PEKNEVSWTAMLMGYTQCG----RIQ 147
++NV++WTT+ISGY N+ D LF M + N ++ A L + G +Q
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 148 DAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGY 207
+ K K++ SNS+I + G V+KAR++FD+ K TW+ MI Y G
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV 267
+LE + +F M+ VR++ S SV+ +CA+L L Q+H +V+ F D + +
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335
Query: 268 LITMYIKCGELVKGKLIFDNFAS-KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326
L+ Y KC ++ +F ++V W ++ISG+ Q E+++ +F EM GV P
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP 395
Query: 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386
++ T +L+A + ++ +K+ Y E + ++D + G+VE+A K+
Sbjct: 396 NEFTYSVILTALPVISPSEVHAQV---VKTNY--ERSSTVGTALLDAYVKLGKVEEAAKV 450
Query: 387 IEAMPFEPDAIIWGSLLGA 405
+ + D + W ++L
Sbjct: 451 FSGID-DKDIVAWSAMLAG 468
Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/457 (23%), Positives = 202/457 (44%), Gaps = 84/457 (18%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFIRDSRIDDA 56
M ERNVV+WT ++ GY M E TLF +M + N ++ LG +
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213
Query: 57 RRLFDMMP----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
++ ++ +K + +++ Y + G V + R +FD+ K+V++W +MISGY N
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273
Query: 113 N------------RIDVAR-------KLFEVMPEKNEVSW-------------------- 133
R++ R + ++ E+ +
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333
Query: 134 TAMLMGYTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192
TA+++ Y++C + DA LFK + + +VV+ +MI G QN
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQN------------------ 375
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252
G E E +DLF+ M+++GVR N + +L+ ++ +VHAQ
Sbjct: 376 ------------DGKE-EAVDLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQ 418
Query: 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKS 312
+V+ ++ V + L+ Y+K G++ + +F KDIV W+++++GYAQ G E +
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAA 478
Query: 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372
+K+F E+ G+ P++ T +L+ C+ T + F K ++ + ++
Sbjct: 479 IKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLT 538
Query: 373 LLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
+ + G +E A ++ + E D + W S++ H
Sbjct: 539 MYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQH 574
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 10/344 (2%)
Query: 69 VAQTNM-VLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEV--- 124
VAQ + G R+ +FD+ P ++ S+ +++ G+ + R A++LF
Sbjct: 27 VAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR 86
Query: 125 --MPEKNEVSWTAMLMGYTQCGRI---QDAWELFKAMPMKSVVASNSMILGLGQNGEVQK 179
M + + + + T C + Q + K + V S++ + +
Sbjct: 87 LGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD 146
Query: 180 ARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239
R VFD+M+E++ TW+ +I Y R EV+ LF MQ EG + N + + L V A
Sbjct: 147 GRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAE 206
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
G QVH +V+ D + V++ LI +Y+KCG + K +++FD K +V WNS+
Sbjct: 207 EGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSM 266
Query: 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
ISGYA GL ++L +F+ M + V + + V+ C+ +++ ++ S+
Sbjct: 267 ISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGF 326
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
+ + A MV + + DA++L + + + + W +++
Sbjct: 327 LFDQNIRTALMV-AYSKCTAMLDALRLFKEIGCVGNVVSWTAMI 369
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 26/226 (11%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDM 62
ER+ TA++ YV+ G + EA +F + +K++V+W+ ML G+ + + A ++F
Sbjct: 425 ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGE 484
Query: 63 MPEK-------------DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGY 109
+ + +V A TN +G G+ G I + +S + +++ Y
Sbjct: 485 LTKGGIKPNEFTFSSILNVCAATNASMG---QGKQFHGFAIKSRLDSSLCVS-SALLTMY 540
Query: 110 VNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMIL 169
I+ A ++F+ EK+ VSW +M+ GY Q G+ A ++FK M + V +
Sbjct: 541 AKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFI 600
Query: 170 GL----GQNGEVQKARVVFDQM-REKDDATW----SGMIKVYERKG 206
G+ G V++ FD M R+ A S M+ +Y R G
Sbjct: 601 GVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAG 646
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 231/590 (39%), Positives = 348/590 (58%), Gaps = 25/590 (4%)
Query: 35 KNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEM 94
+N+ ++ + + +D+A +F M KDVV+ MV GY Q GR ++ +F++M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 95 P----KKNVISWTTMISGYVNNN----RIDVARKLFEVMPEKNEVSWTAMLMGYT----- 141
K +V++W+ ISGY + V R++ + NEV+ ++L G
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 142 ------QCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQM--REKDDA 193
C I+ +L K + N +I + +V AR +FD + +E+D
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEG--VRVNFPSLISVLSVCASLASLDHGRQVHA 251
TW+ MI Y + G + ++L + M +E R N ++ L CASLA+L G+Q+HA
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501
Query: 252 QLVRCQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGE 310
+R Q + V ++V++ LI MY KCG + +L+FDN +K+ V W S+++GY +G GE
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGE 561
Query: 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370
++L +F EM G D VTL+ VL ACS++G + +G E F MK+ + V P EHYAC+
Sbjct: 562 EALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACL 621
Query: 371 VDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430
VDLLGRAG++ A++LIE MP EP ++W + L CR H K++L E AA+K+ +L +
Sbjct: 622 VDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHD 681
Query: 431 GPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEH 490
G Y LLSN+YA+ GR+ DV +R MR + V K PGCSW+E K F D +HP
Sbjct: 682 GSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGD-KTHPHA 740
Query: 491 PMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVP 550
I ++L +++ GY P++ F LHDVD+EEK L HSEKLA+AYG++ P+G
Sbjct: 741 KEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAA 800
Query: 551 IRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
IR+ KNLRVCGDCH+A +S+++ +IILRD++RFHHFK+G CSC+ YW
Sbjct: 801 IRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 198/400 (49%), Gaps = 27/400 (6%)
Query: 35 KNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEM 94
NV ++ + R + DAR++FD M DVV+ +++ Y + G+ E+F M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219
Query: 95 P-----KKNVISWTTMISGYVNNNRIDVARKL--FEVMPE--KNEVSWTAMLMGYTQCGR 145
+ + I+ ++ + + ++L F V E +N ++ Y +CG
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGM 279
Query: 146 IQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKV 201
+ +A +F M +K VV+ N+M+ G Q G + A +F++M+E+ D TWS I
Sbjct: 280 MDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISG 339
Query: 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDV- 260
Y ++G E + + M G++ N +LISVLS CAS+ +L HG+++H ++ D+
Sbjct: 340 YAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLR 399
Query: 261 ------DVYVASVLITMYIKCGELVKGKLIFDNFASK--DIVMWNSIISGYAQYGLGEKS 312
+ V + LI MY KC ++ + +FD+ + K D+V W +I GY+Q+G K+
Sbjct: 400 KNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKA 459
Query: 313 LKVFHEMFSSGVM--PDDVTLVGVLSACSYTGKVKEGREIFE-SMKSKYLVEPKTEHYAC 369
L++ EMF P+ T+ L AC+ ++ G++I +++++ P C
Sbjct: 460 LELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS-NC 518
Query: 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
++D+ + G + DA + + M + + W SL+ H
Sbjct: 519 LIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMH 557
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 179/396 (45%), Gaps = 63/396 (15%)
Query: 72 TNMVLGYCQDGRVDEGREIFDEMPKKN--VISWTTMISGYVNNNRIDVARKLFEVMPEKN 129
++++ Y G + + P + V W ++I Y +N + LF +M +
Sbjct: 63 SHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLM---H 119
Query: 130 EVSWTAMLMGY------------TQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEV 177
+SWT + +CG A L + +V N+++ + +
Sbjct: 120 SLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGF-ISNVFVGNALVAMYSRCRSL 178
Query: 178 QKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE-GVRVNFPSLISVLSV 236
AR VFD+M D +W+ +I+ Y + G +++F+ M E G R + +L++VL
Sbjct: 179 SDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPP 238
Query: 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
CASL + G+Q+H V + +++V + L+ MY KCG + + +F N + KD+V W
Sbjct: 239 CASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSW 298
Query: 297 NSI-----------------------------------ISGYAQYGLGEKSLKVFHEMFS 321
N++ ISGYAQ GLG ++L V +M S
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358
Query: 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA-------CMVDLL 374
SG+ P++VTL+ VLS C+ G + G+EI KY ++ + + ++D+
Sbjct: 359 SGIKPNEVTLISVLSGCASVGALMHGKEI-HCYAIKYPIDLRKNGHGDENMVINQLIDMY 417
Query: 375 GRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTH 409
+ +V+ A + +++ P E D + W ++G H
Sbjct: 418 AKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQH 453
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 108/481 (22%), Positives = 183/481 (38%), Gaps = 129/481 (26%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM 63
+N+ +V Y + GM+ EA T+F M K+VVSW M+ G+ + R +DA RLF+ M
Sbjct: 262 QNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKM 321
Query: 64 PEK----DVVAQTNMVLGYCQDGRVDEG----REIFDEMPKKNVISWTTMISG------- 108
E+ DVV + + GY Q G E R++ K N ++ +++SG
Sbjct: 322 QEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL 381
Query: 109 -----------------------------------YVNNNRIDVARKLFEVMP--EKNEV 131
Y ++D AR +F+ + E++ V
Sbjct: 382 MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVV 441
Query: 132 SWTAMLMGYTQCGRIQDAWELFKAM--------PMKSVVA-------------------- 163
+WT M+ GY+Q G A EL M P ++
Sbjct: 442 TWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA 501
Query: 164 --------------SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209
SN +I + G + AR+VFD M K++ TW+ ++ Y GY
Sbjct: 502 YALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGE 561
Query: 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269
E + +F M++ G +++ +L+ VL C+ +D G + ++
Sbjct: 562 EALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM---------------- 605
Query: 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329
K +F S + ++ + G +L++ EM + P V
Sbjct: 606 ------------KTVFG--VSPGPEHYACLVDLLGRAGRLNAALRLIEEM---PMEPPPV 648
Query: 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
V LS C GKV+ G + + K L Y + +L AG+ +D ++
Sbjct: 649 VWVAFLSCCRIHGKVELGE--YAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSL 706
Query: 390 M 390
M
Sbjct: 707 M 707
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 63/281 (22%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPE---------------------------- 34
ER+VV+WT M+ GY + G +A L +M E
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIG 496
Query: 35 -----------KNVVSWTV---MLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQ 80
+N V V ++ + + I DAR +FD M K+ V T+++ GY
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 81 DGRVDEGREIFDEMPKKN---------VISWTTMISGYVNNN--RIDVARKLFEVMPEKN 129
G +E IFDEM + V+ + SG ++ + + +F V P
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616
Query: 130 EVSWTAMLMGYTQCGRIQDAWELFKAMPMKS------VVASNSMILGLGQNGEVQKARVV 183
+ L+G + GR+ A L + MPM+ S I G + GE ++
Sbjct: 617 HYACLVDLLG--RAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKIT 674
Query: 184 FDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
++ D +++ + +Y G +V + +LM+ +GV+
Sbjct: 675 --ELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/641 (34%), Positives = 357/641 (55%), Gaps = 53/641 (8%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV 69
T ++ G IT A +F +P + W ++ G+ R++ DA ++ M V
Sbjct: 57 TKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVS 116
Query: 70 AQTNMV---------LGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+ L + Q GR ++F +V +I+ Y R+ AR
Sbjct: 117 PDSFTFPHLLKACSGLSHLQMGRFVHA-QVFRLGFDADVFVQNGLIALYAKCRRLGSART 175
Query: 121 LFE--VMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------PMKSVVASNSMI 168
+FE +PE+ VSWTA++ Y Q G +A E+F M + SV+ + + +
Sbjct: 176 VFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCL 235
Query: 169 LGLGQN-----------------------------GEVQKARVVFDQMREKDDATWSGMI 199
L Q G+V A+++FD+M+ + W+ MI
Sbjct: 236 QDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMI 295
Query: 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259
Y + GY E ID+F M + VR + S+ S +S CA + SL+ R ++ + R +
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYR 355
Query: 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEM 319
DV+++S LI M+ KCG + +L+FD +D+V+W+++I GY +G +++ ++ M
Sbjct: 356 DDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM 415
Query: 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379
GV P+DVT +G+L AC+++G V+EG F M + + + P+ +HYAC++DLLGRAG
Sbjct: 416 ERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGH 474
Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439
++ A ++I+ MP +P +WG+LL AC+ H ++L E AA++L ++P N G Y+ LSN+
Sbjct: 475 LDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNL 534
Query: 440 YASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEK 499
YA+ + VAE+R M+++ + K GCSW+EV ++ F D SHP + I R +E
Sbjct: 535 YAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGD-KSHPRYEEIERQVEW 593
Query: 500 IGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRV 559
I L+E G+ + LHD+++EE +L HSE++A+AYGL+ P+G P+R+ KNLR
Sbjct: 594 IESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRA 653
Query: 560 CGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
C +CH+A KLISK++ REI++RD NRFHHFKDG+CSC DYW
Sbjct: 654 CVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306
+Q+HA+L+ ++ + LI G++ + +FD+ I WN+II GY++
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR----EIFE-SMKSKYLVE 361
+ +L ++ M + V PD T +L ACS ++ GR ++F + V+
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157
Query: 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII-WGSLLGA 405
++ L + ++ A + E +P I+ W +++ A
Sbjct: 158 NG------LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/592 (36%), Positives = 345/592 (58%), Gaps = 48/592 (8%)
Query: 48 IRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMIS 107
+ S I RR ++ + +K V + + GR+ I + + +++ T+++
Sbjct: 51 LEGSYIPADRRFYNTLLKKCTVFKLLI------QGRIVHA-HILQSIFRHDIVMGNTLLN 103
Query: 108 GYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------P 157
Y ++ ARK+FE MP+++ V+WT ++ GY+Q R DA F M
Sbjct: 104 MYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFT 163
Query: 158 MKSVVAS----------------------------NSMILGL-GQNGEVQKARVVFDQMR 188
+ SV+ + S +L L + G + A++VFD +
Sbjct: 164 LSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALE 223
Query: 189 EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ 248
++D +W+ +I + R+ + ++LF M ++G R + S S+ C+S L+ G+
Sbjct: 224 SRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283
Query: 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGL 308
VHA +++ + + + L+ MY K G + + IFD A +D+V WNS+++ YAQ+G
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGF 343
Query: 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368
G++++ F EM G+ P++++ + VL+ACS++G + EG +E MK +V P+ HY
Sbjct: 344 GKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV-PEAWHYV 402
Query: 369 CMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428
+VDLLGRAG + A++ IE MP EP A IW +LL ACR H +L AA+ + +L+P
Sbjct: 403 TVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPD 462
Query: 429 NAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHP 488
+ GP+++L NIYAS GR++D A +RK M++ V K P CSW+E+E +HMF D HP
Sbjct: 463 DPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVAND-ERHP 521
Query: 489 EHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEG 548
+ I R E++ ++E GY PD+S V+ VD++E+ +L+YHSEK+A+A+ L+ P G
Sbjct: 522 QREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPG 581
Query: 549 VPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
I + KN+RVCGDCH+AIKL SKV+GREII+RD NRFHHFKDG CSC+DYW
Sbjct: 582 STIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 134/289 (46%), Gaps = 47/289 (16%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM- 63
++V ++ Y + G + EA +F +MP+++ V+WT ++ G+ + R DA F+ M
Sbjct: 94 DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153
Query: 64 -----PEKDVVAQ---------------------------TNMVLG------YCQDGRVD 85
P + ++ +N+ +G Y + G +D
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213
Query: 86 EGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEK----NEVSWTAMLMGYT 141
+ + +FD + +N +SW +I+G+ + + A +LF+ M + S+ ++ +
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273
Query: 142 QCGRI-QDAW---ELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSG 197
G + Q W + K+ A N+++ ++G + AR +FD++ ++D +W+
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 333
Query: 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246
++ Y + G+ E + F M++ G+R N S +SVL+ C+ LD G
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 17/218 (7%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV----VSWTVMLGGFIRDSRIDDA 56
+ RN VSW A++ G+ +A LF M S+ + G ++
Sbjct: 222 LESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQG 281
Query: 57 RRLFDMM---PEKDVVAQTNMVLG-YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ + M EK V N +L Y + G + + R+IFD + K++V+SW ++++ Y +
Sbjct: 282 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 341
Query: 113 NRIDVARKLFEVMP----EKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASN--- 165
A FE M NE+S+ ++L + G + + W ++ M +V
Sbjct: 342 GFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHY 401
Query: 166 -SMILGLGQNGEVQKARVVFDQMR-EKDDATWSGMIKV 201
+++ LG+ G++ +A ++M E A W ++
Sbjct: 402 VTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 439
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDA 56
+ +R+VVSW +++ Y + G EA F +M N +S+ +L +D+
Sbjct: 323 LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382
Query: 57 RRLFDMMPEKDVVAQT----NMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISGYVN 111
+++M + +V + +V + G ++ +EMP + W +++
Sbjct: 383 WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRM 442
Query: 112 NNRIDV----ARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV 161
+ ++ A +FE+ P+ + + Y GR DA + K M V
Sbjct: 443 HKNTELGAYAAEHVFELDPD-DPGPHVILYNIYASGGRWNDAARVRKKMKESGV 495
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 243/649 (37%), Positives = 357/649 (55%), Gaps = 50/649 (7%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK-----NVVSWTVMLGG--------- 46
M ERNVVSWT+M+ GY +A LF++M N V+ ++
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254
Query: 47 ------FIRDS--------------------RIDDARRLFDMMPEKDVVAQTNMVLGYCQ 80
FIR+S ID A+RLFD ++ M Y +
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 81 DGRVDEGREIFDEMPKKNV----ISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW--- 133
G E +F+ M V IS + IS I + + SW
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374
Query: 134 -TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192
A++ Y +C R A+ +F M K+VV NS++ G +NGEV A F+ M EK+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434
Query: 193 ATWSGMIKVYERKGYELEVIDLFTLMQ-KEGVRVNFPSLISVLSVCASLASLDHGRQVHA 251
+W+ +I + E I++F MQ +EGV + +++S+ S C L +LD + ++
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494
Query: 252 QLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEK 311
+ + +DV + + L+ M+ +CG+ IF++ ++D+ W + I A G E+
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554
Query: 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371
++++F +M G+ PD V VG L+ACS+ G V++G+EIF SM + V P+ HY CMV
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614
Query: 372 DLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431
DLLGRAG +E+A++LIE MP EP+ +IW SLL ACR +++A AA+K+ L P+ G
Sbjct: 615 DLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTG 674
Query: 432 PYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHP 491
Y+LLSN+YAS GR++D+A++R +M+++ + KPPG S I++ K H FT D SHPE P
Sbjct: 675 SYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGD-ESHPEMP 733
Query: 492 MIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPI 551
I ML+++ G+ PD S VL DVDE+EK+ L HSEKLA+AYGL+ +G I
Sbjct: 734 NIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793
Query: 552 RVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
R++KNLRVC DCHS K SKV REIILRD NRFH+ + G CSC D+W
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 180/381 (47%), Gaps = 33/381 (8%)
Query: 57 RRLFDMMPEKDVVAQTNMVLGYCQDGRVDE---GREIFDEMPK-KNVISWTTMISGYVNN 112
R L + DV T +V C+ G + +E+F+ + ++I GY ++
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 113 NRIDVARKLFEVM------PEKNEVSWTAMLMGYTQCGR-------IQDAWELFKAMPMK 159
+ A LF M P+K + G + C + IQ + K K
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPF-----GLSACAKSRAKGNGIQIHGLIVKMGYAK 167
Query: 160 SVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLF-TLM 218
+ NS++ + GE+ AR VFD+M E++ +W+ MI Y R+ + + +DLF ++
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227
Query: 219 QKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL 278
+ E V N +++ V+S CA L L+ G +V+A + +V+ + S L+ MY+KC +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287
Query: 279 VKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
K +FD + + ++ + N++ S Y + GL ++L VF+ M SGV PD ++++ +S+C
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHY----ACMVDLLGRAGQVEDAMKLIEAMPFEP 394
S + G+ Y++ E + ++D+ + + + A ++ + M
Sbjct: 348 SQLRNILWGKSCH-----GYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMS-NK 401
Query: 395 DAIIWGSLLGACRTHMKLDLA 415
+ W S++ + ++D A
Sbjct: 402 TVVTWNSIVAGYVENGEVDAA 422
>sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950
OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1
Length = 995
Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust.
Identities = 240/644 (37%), Positives = 361/644 (56%), Gaps = 54/644 (8%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV 69
+V Y + G I +A +F+ M +K+ VSW M+ G ++ +A + M D++
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412
Query: 70 AQTNMV---LGYCQDGR-VDEGREIFDEMPKK----NVISWTTMISGYVNNNRIDVARKL 121
+ + L C + G++I E K NV +++ Y ++ RK+
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472
Query: 122 FEVMPEKNEVSWTAMLMGYTQCGR-IQDAWELF--------------------------- 153
F MPE ++VSW +++ + R + +A F
Sbjct: 473 FSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSF 532
Query: 154 -------KAMPMKSVVAS-----NSMILGLGQNGEVQKARVVFDQMREK-DDATWSGMIK 200
+ +K+ +A N++I G+ GE+ +F +M E+ D+ TW+ MI
Sbjct: 533 GELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592
Query: 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDV 260
Y + +DL M + G R++ +VLS AS+A+L+ G +VHA VR +
Sbjct: 593 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 652
Query: 261 DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320
DV V S L+ MY KCG L F+ ++ WNS+ISGYA++G GE++LK+F M
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712
Query: 321 SSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379
G PD VT VGVLSACS+ G ++EG + FESM Y + P+ EH++CM D+LGRAG+
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772
Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGAC--RTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437
++ IE MP +P+ +IW ++LGAC K +L + AA+ L QLEP+NA Y+LL
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 832
Query: 438 NIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRML 497
N+YA+ GR+ D+ + RK M+ +V K G SW+ ++ VHMF D SHP+ +I + L
Sbjct: 833 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGD-KSHPDADVIYKKL 891
Query: 498 EKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGL-VKLPEGVPIRVMKN 556
+++ +R+AGY P + F L+D+++E K L YHSEKLAVA+ L + +PIR+MKN
Sbjct: 892 KELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKN 951
Query: 557 LRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
LRVCGDCHSA K ISK+ GR+IILRD+NRFHHF+DG CSC D+W
Sbjct: 952 LRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 199/462 (43%), Gaps = 63/462 (13%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDAR-RLFD 61
+++V ++ Y+E G A +F +MP +N VSW ++ G+ R+ +A L D
Sbjct: 33 DKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRD 92
Query: 62 MMPEKDVVAQTNM--VLGYCQD-GRVD--EGREIFDEMPK----KNVISWTTMISGYVNN 112
M+ E Q VL CQ+ G V GR+I M K + + +IS Y
Sbjct: 93 MVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKC 152
Query: 113 -NRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP-------------- 157
+ A F + KN VSW +++ Y+Q G + A+ +F +M
Sbjct: 153 IGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSL 212
Query: 158 ---------------------------MKSVVASNSMILGLGQNGEVQKARVVFDQMREK 190
+ + + ++ ++G + AR VF+QM +
Sbjct: 213 VTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETR 272
Query: 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS-----VCASLASLDH 245
+ T +G++ R+ + E LF M + V+ S + +LS A L
Sbjct: 273 NAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSSFPEYSLAEEVGLKK 331
Query: 246 GRQVHAQLVRCQF-DVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304
GR+VH ++ D V + + L+ MY KCG + + +F KD V WNS+I+G
Sbjct: 332 GREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLD 391
Query: 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF-ESMKSKYLVEPK 363
Q G ++++ + M ++P TL+ LS+C+ K G++I ES+K ++
Sbjct: 392 QNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLG--IDLN 449
Query: 364 TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
++ L G + + K+ +MP E D + W S++GA
Sbjct: 450 VSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 168/363 (46%), Gaps = 18/363 (4%)
Query: 58 RLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDV 117
RL+ +KDV N++ Y + G R++FDEMP +N +SW ++SGY N
Sbjct: 26 RLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKE 85
Query: 118 ARKLFEVMPEK----NEVSWTAMLMGYTQCGRI------QDAWELFKAMPMKSVVASNSM 167
A M ++ N+ ++ ++L + G + Q +FK V SN +
Sbjct: 86 ALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVL 145
Query: 168 ILGLGQN-GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
I + G V A F + K+ +W+ +I VY + G + +F+ MQ +G R
Sbjct: 146 ISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPT 205
Query: 227 FPSLISVLSVCASLASLDHG--RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284
+ S+++ SL D Q+ + + D++V S L++ + K G L + +
Sbjct: 206 EYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKV 265
Query: 285 FDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS-GVMPDD-VTLVGVLSACSYTG 342
F+ +++ V N ++ G + GE++ K+F +M S V P+ V L+ S
Sbjct: 266 FNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAE 325
Query: 343 KV--KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWG 400
+V K+GRE+ + + LV+ +V++ + G + DA ++ M + D++ W
Sbjct: 326 EVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWN 384
Query: 401 SLL 403
S++
Sbjct: 385 SMI 387
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 104/429 (24%), Positives = 193/429 (44%), Gaps = 35/429 (8%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDS---RIDDARRLF 60
+N VSW +++ Y + G A +F M G + + D R L
Sbjct: 169 KNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLE 228
Query: 61 DMMPE-------KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNN 113
+M D+ + +V + + G + R++F++M +N ++ ++ G V
Sbjct: 229 QIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQK 288
Query: 114 RIDVARKLFEVMPEKNEVS---WTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMI-- 168
+ A KLF M +VS + +L + + ++ L K + V + ++
Sbjct: 289 WGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEV-GLKKGREVHGHVITTGLVDF 347
Query: 169 -LGLGQN--------GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219
+G+G G + AR VF M +KD +W+ MI ++ G +E ++ + M+
Sbjct: 348 MVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMR 407
Query: 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279
+ + +LIS LS CASL G+Q+H + ++ D++V V++ L+T+Y + G L
Sbjct: 408 RHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLN 467
Query: 280 KGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLK----VFHEMFSSGVMPDDVTLVGVL 335
+ + IF + D V WNSII A+ E+SL F +G + +T VL
Sbjct: 468 ECRKIFSSMPEHDQVSWNSIIGALAR---SERSLPEAVVCFLNAQRAGQKLNRITFSSVL 524
Query: 336 SACSYTGKVKEGREIFE-SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394
SA S + G++I ++K+ E TE+ ++ G+ G+++ K+ M
Sbjct: 525 SAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGKCGEMDGCEKIFSRMAERR 582
Query: 395 DAIIWGSLL 403
D + W S++
Sbjct: 583 DNVTWNSMI 591
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQ 305
R H++L + + D DVY+ + LI Y++ G+ V + +FD ++ V W I+SGY++
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK--EGREIFESM-KSKYLVEP 362
G +++L +M G+ + V VL AC G V GR+I M K Y V+
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/620 (37%), Positives = 339/620 (54%), Gaps = 48/620 (7%)
Query: 28 LFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQT---NMVLGYCQDGR- 83
LF N+ + ++ GF+ + + LF + + + +VL C
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 84 ----VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG 139
+D + +V + T+++S Y + R++ A KLF+ +P+++ V+WTA+ G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 140 YTQCGRIQDAWELFKAMP---------------------------------------MKS 160
YT GR ++A +LFK M K+
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246
Query: 161 VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220
+++ + G+++KAR VFD M EKD TWS MI+ Y + E I+LF M +
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306
Query: 221 EGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280
E ++ + S++ LS CASL +LD G + + R +F ++++A+ LI MY KCG + +
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMAR 366
Query: 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340
G +F KDIV+ N+ ISG A+ G + S VF + G+ PD T +G+L C +
Sbjct: 367 GFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVH 426
Query: 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWG 400
G +++G F ++ Y ++ EHY CMVDL GRAG ++DA +LI MP P+AI+WG
Sbjct: 427 AGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWG 486
Query: 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460
+LL CR LAE K+L+ LEP NAG Y+ LSNIY+ GR+ + AE+R M K+
Sbjct: 487 ALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKG 546
Query: 461 VIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDV 520
+ K PG SWIE+E KVH F D SHP I LE +G +R G+ P + FV DV
Sbjct: 547 MKKIPGYSWIELEGKVHEFLADD-KSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDV 605
Query: 521 DEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIIL 580
+EEEK L YHSEKLAVA GL+ G IRV+KNLRVCGDCH +KLISK+ REI++
Sbjct: 606 EEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVV 665
Query: 581 RDANRFHHFKDGLCSCRDYW 600
RD NRFH F +G CSC DYW
Sbjct: 666 RDNNRFHCFTNGSCSCNDYW 685
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 116/250 (46%), Gaps = 51/250 (20%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVV--SWTV--MLGGFIRDSRIDDA 56
+P+R+VV+WTA+ GY G EA LF +M E V S+ + +L + +D
Sbjct: 172 IPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSG 231
Query: 57 RRLFDMMPE----KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ M E K+ +T +V Y + G++++ R +FD M +K++++W+TMI GY +N
Sbjct: 232 EWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASN 291
Query: 113 NRIDVARKLFEVMPEKNE--------------VSWTAMLMG------------------- 139
+ +LF M ++N S A+ +G
Sbjct: 292 SFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMA 351
Query: 140 ------YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMRE---- 189
Y +CG + +E+FK M K +V N+ I GL +NG V+ + VF Q +
Sbjct: 352 NALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGIS 411
Query: 190 KDDATWSGMI 199
D +T+ G++
Sbjct: 412 PDGSTFLGLL 421
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 111/277 (40%), Gaps = 40/277 (14%)
Query: 225 VNFPSLISVLSVCASLASL----DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280
V PS S + +L S+ +H +Q+H L+ D ++ ++L+ + +
Sbjct: 4 VTVPSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKY 63
Query: 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340
L+F + +I ++NS+I+G+ L ++L +F + G+ T VL AC+
Sbjct: 64 SYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTR 123
Query: 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP--------- 391
K G ++ S+ K ++ + +G++ DA KL + +P
Sbjct: 124 ASSRKLGIDL-HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTA 182
Query: 392 -------------------------FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426
+PD+ +L AC LD E K + ++E
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 427 -PKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462
KN+ L N+YA G+ + +M +++++
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIV 279
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/626 (36%), Positives = 355/626 (56%), Gaps = 30/626 (4%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDA 56
M E NVV+WT M+ ++ G EA F M E + + + + +
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288
Query: 57 RRLFDMMPEKDVV--AQTNMVLGYCQ---DGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
++L +V + ++V Y + DG VD+ R++FD M +V+SWT +I+GY+
Sbjct: 289 KQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMK 348
Query: 112 N-NRIDVARKLFEVM-----PEKNEVSWTAMLMGYTQCGRIQDA-------WELFKAMPM 158
N N A LF M E N ++++ + CG + D + FK
Sbjct: 349 NCNLATEAINLFSEMITQGHVEPNHFTFSS---AFKACGNLSDPRVGKQVLGQAFKRGLA 405
Query: 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLM 218
+ +NS+I ++ ++ A+ F+ + EK+ +++ + R + L + +
Sbjct: 406 SNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI 465
Query: 219 QKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL 278
+ + V+ + S+LS A++ S+ G Q+H+Q+V+ + V + LI+MY KCG +
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525
Query: 279 VKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
+F+ +++++ W S+I+G+A++G + L+ F++M GV P++VT V +LSAC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398
S+ G V EG F SM + ++PK EHYACMVDLL RAG + DA + I MPF+ D ++
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645
Query: 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458
W + LGACR H +L ++AA+K+L+L+P YI LSNIYA G++ + E+R+ M++
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705
Query: 459 RNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLH 518
RN++K GCSWIEV K+H F D +HP I L+++ ++ GY PD+ VLH
Sbjct: 706 RNLVKEGGCSWIEVGDKIHKFYVGD-TAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLH 764
Query: 519 DVDEEEKVHS----LRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVM 574
++EE L HSEK+AVA+GL+ + P+RV KNLRVCGDCH+A+K IS V
Sbjct: 765 KLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVS 824
Query: 575 GREIILRDANRFHHFKDGLCSCRDYW 600
GREI+LRD NRFHHFKDG CSC DYW
Sbjct: 825 GREIVLRDLNRFHHFKDGKCSCNDYW 850
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/371 (25%), Positives = 174/371 (46%), Gaps = 25/371 (6%)
Query: 58 RLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEM---PKKNVISWTTMISGYVNNNR 114
RL + E D V +++ Y + G + ++F+ M K++V+SW+ M++ Y NN R
Sbjct: 87 RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGR 146
Query: 115 ----IDVARKLFEVMPEKNEVSWTAMLMG-----YTQCGRIQDAWELFKAMPMKSVVASN 165
I V + E+ N+ +TA++ + GR+ + L K +S V
Sbjct: 147 ELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF-LMKTGHFESDVCVG 205
Query: 166 SMILGLGQNGE--VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
++ + GE + A VFD+M E + TW+ MI + G+ E I F M G
Sbjct: 206 CSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGF 265
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC---GELVK 280
+ +L SV S CA L +L G+Q+H+ +R DV + L+ MY KC G +
Sbjct: 266 ESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDD 323
Query: 281 GKLIFDNFASKDIVMWNSIISGYAQY-GLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSAC 338
+ +FD ++ W ++I+GY + L +++ +F EM + G V P+ T AC
Sbjct: 324 CRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398
+ G+++ + L + + ++ + ++ ++EDA + E++ E + +
Sbjct: 384 GNLSDPRVGKQVLGQAFKRGLASNSSVANS-VISMFVKSDRMEDAQRAFESLS-EKNLVS 441
Query: 399 WGSLL-GACRT 408
+ + L G CR
Sbjct: 442 YNTFLDGTCRN 452
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/431 (20%), Positives = 184/431 (42%), Gaps = 29/431 (6%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDD----ARR 58
+R+VVSW+AM+ Y G +A +F + E +V IR D R
Sbjct: 128 KRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRV 187
Query: 59 LFDMMP-----EKDVVAQTNMVLGYCQ-DGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ E DV +++ + + + + ++FD+M + NV++WT MI+ +
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247
Query: 113 NRIDVARKLFEVMP----EKNEVSWTAMLMGYTQCGRIQD--------AWELFKAMPMKS 160
A + F M E ++ + +++ ++ C +++ +W + +
Sbjct: 248 GFPREAIRFFLDMVLSGFESDKFTLSSV---FSACAELENLSLGKQLHSWAIRSGLVDDV 304
Query: 161 VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERK-GYELEVIDLFTLMQ 219
+ M +G V R VFD+M + +W+ +I Y + E I+LF+ M
Sbjct: 305 ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMI 364
Query: 220 KEG-VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL 278
+G V N + S C +L+ G+QV Q + + VA+ +I+M++K +
Sbjct: 365 TQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRM 424
Query: 279 VKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338
+ F++ + K++V +N+ + G + E++ K+ E+ + T +LS
Sbjct: 425 EDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGV 484
Query: 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398
+ G +++G +I S K + ++ + + G ++ A ++ M + I
Sbjct: 485 ANVGSIRKGEQI-HSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFME-NRNVIS 542
Query: 399 WGSLLGACRTH 409
W S++ H
Sbjct: 543 WTSMITGFAKH 553
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 6/200 (3%)
Query: 212 IDLFTLMQKEGVR-VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270
+ LM ++G+R ++ + S+L C G+ VHA+L+ + D + + LI+
Sbjct: 46 VSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLIS 105
Query: 271 MYIKCGELVKGKLIFDN---FASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327
+Y K G+ K + +F+ F +D+V W+++++ Y G ++KVF E G++P+
Sbjct: 106 LYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPN 165
Query: 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA-GQVEDAMKL 386
D V+ ACS + V GR + E ++D+ + E+A K+
Sbjct: 166 DYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKV 225
Query: 387 IEAMPFEPDAIIWGSLLGAC 406
+ M E + + W ++ C
Sbjct: 226 FDKMS-ELNVVTWTLMITRC 244
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 415 bits (1066), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/467 (43%), Positives = 299/467 (64%), Gaps = 1/467 (0%)
Query: 134 TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193
T ++ Y + G + ++F ++P V +M+ + G+V AR +F+ M E+D
Sbjct: 147 TGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPI 206
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253
W+ MI Y + G E +++F LMQ EGV+VN ++ISVLS C L +LD GR H+ +
Sbjct: 207 AWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYI 266
Query: 254 VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313
R + + V +A+ L+ +Y KCG++ K +F K++ W+S ++G A G GEK L
Sbjct: 267 ERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326
Query: 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373
++F M GV P+ VT V VL CS G V EG+ F+SM++++ +EP+ EHY C+VDL
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDL 386
Query: 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433
RAG++EDA+ +I+ MP +P A +W SLL A R + L+L +A+KK+L+LE N G Y
Sbjct: 387 YARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAY 446
Query: 434 ILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMI 493
+LLSNIYA + +V+ +R++M+ + V K PGCS +EV +VH F D SHP++ I
Sbjct: 447 VLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGD-KSHPKYTQI 505
Query: 494 MRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRV 553
+ + I LR AGY D++ V+ D+DEEEK +L HSEK A+A+G++ L E VPIR+
Sbjct: 506 DAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRI 565
Query: 554 MKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
+KNLRVCGDCH +ISK+ REII+RD NRFHHFKDG CSC +W
Sbjct: 566 VKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 47/292 (16%)
Query: 57 RRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116
RR FD P QT ++ Y + G +D ++F+ +P + + T M++ +
Sbjct: 136 RRGFDNDPH----VQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVV 191
Query: 117 VARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------PMKSVVASNS 166
ARKLFE MPE++ ++W AM+ GY Q G ++A +F M M SV+++ +
Sbjct: 192 FARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACT 251
Query: 167 MILGLGQN-----------------------------GEVQKARVVFDQMREKDDATWSG 197
+ L Q G+++KA VF M EK+ TWS
Sbjct: 252 QLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSS 311
Query: 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQ 257
+ G+ + ++LF+LM+++GV N + +SVL C+ + +D G Q H +R +
Sbjct: 312 ALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEG-QRHFDSMRNE 370
Query: 258 FDVDVYVA--SVLITMYIKCGELVKGKLIFDNFASK-DIVMWNSIISGYAQY 306
F ++ + L+ +Y + G L I K +W+S++ Y
Sbjct: 371 FGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMY 422
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDV- 68
T +V Y + G + +A +FW M EKNV +W+ L G + + LF +M + V
Sbjct: 279 TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVT 338
Query: 69 ---VAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM 125
V +++ G G VDEG+ FD M R F +
Sbjct: 339 PNAVTFVSVLRGCSVVGFVDEGQRHFDSM------------------------RNEFGIE 374
Query: 126 PEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMIL 169
P+ + ++ Y + GR++DA + + MPMK A S +L
Sbjct: 375 PQLEH--YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL 416
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 32/188 (17%)
Query: 239 SLASLDHG------RQVHAQLVRCQFDVDVYVASVL-----ITMYIKCGELVKGKL---- 283
++A LD G RQ+HA+L YV L + ++K L K
Sbjct: 9 AIALLDSGITFKEVRQIHAKL---------YVDGTLKDDHLVGHFVKAVALSDHKYLDYA 59
Query: 284 --IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG--VMPDDVTLVGVLSACS 339
I D + NS+I + + + EKS + + SSG + PD+ T+ ++ AC+
Sbjct: 60 NQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACT 119
Query: 340 YTGKVKEGREIFE-SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398
+ G ++ +++ + +P + ++ L G ++ K+ ++P PD +
Sbjct: 120 GLRMRETGLQVHGMTIRRGFDNDPHVQ--TGLISLYAELGCLDSCHKVFNSIPC-PDFVC 176
Query: 399 WGSLLGAC 406
+++ AC
Sbjct: 177 RTAMVTAC 184
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 217/589 (36%), Positives = 338/589 (57%), Gaps = 30/589 (5%)
Query: 14 RGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTN 73
R Y G I + LF Q + ++ +T + + D A L+ + ++
Sbjct: 72 RAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEF 131
Query: 74 MVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW 133
+ G+ I +V+ + I YV +DV
Sbjct: 132 TFSSLLKSCSTKSGKLI-----HTHVLKFGLGIDPYVATGLVDV---------------- 170
Query: 134 TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193
Y + G + A ++F MP +S+V+S +MI + G V+ AR +FD M E+D
Sbjct: 171 ------YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIV 224
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEG-VRVNFPSLISVLSVCASLASLDHGRQVHAQ 252
+W+ MI Y + G+ + + LF + EG + + ++++ LS C+ + +L+ GR +H
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVF 284
Query: 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKS 312
+ + ++V V + LI MY KCG L + L+F++ KDIV WN++I+GYA +G + +
Sbjct: 285 VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDA 344
Query: 313 LKVFHEMFS-SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371
L++F+EM +G+ P D+T +G L AC++ G V EG IFESM +Y ++PK EHY C+V
Sbjct: 345 LRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLV 404
Query: 372 DLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431
LLGRAGQ++ A + I+ M + D+++W S+LG+C+ H L + A+ L+ L KN+G
Sbjct: 405 SLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSG 464
Query: 432 PYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHP 491
Y+LLSNIYAS G + VA++R M+++ ++K PG S IE+E KVH F D H +
Sbjct: 465 IYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGD-REHSKSK 523
Query: 492 MIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPI 551
I ML KI ++ GY P+++ VL D++E EK SL+ HSE+LA+AYGL+ G P+
Sbjct: 524 EIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPL 583
Query: 552 RVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
++ KNLRVC DCH+ KLISK+ GR+I++RD NRFHHF DG CSC D+W
Sbjct: 584 KIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 31/341 (9%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV 69
T +V Y + G + A +F +MPE+++VS T M+ + + ++ AR LFD M E+D+V
Sbjct: 165 TGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIV 224
Query: 70 AQTNMVLGYCQDGRVDEGREIFDEM-----PKKNVISWTTMISGYVNNNRIDVARKLFEV 124
+ M+ GY Q G ++ +F ++ PK + I+ +S ++ R +
Sbjct: 225 SWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVF 284
Query: 125 MPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKA 180
+ N T ++ Y++CG +++A +F P K +VA N+MI G +G Q A
Sbjct: 285 VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDA 344
Query: 181 RVVFDQMR-----EKDDATWSGMIKVYERKGYELEVIDLFTLMQKE-GVRV---NFPSLI 231
+F++M+ + D T+ G ++ G E I +F M +E G++ ++ L+
Sbjct: 345 LRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLV 404
Query: 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK-----LIFD 286
S+L L ++ + + D D + S ++ G+ V GK LI
Sbjct: 405 SLLGRAGQL------KRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGL 458
Query: 287 NFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327
N + I + S I YA G E KV + M G++ +
Sbjct: 459 NIKNSGIYVLLSNI--YASVGDYEGVAKVRNLMKEKGIVKE 497
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/534 (40%), Positives = 317/534 (59%), Gaps = 39/534 (7%)
Query: 103 TTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM------ 156
+I+ YV N ++ A +LF+ MP++N +SWT M+ Y++C Q A EL M
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159
Query: 157 ----PMKSVVAS--------------------------NSMILGLGQNGEVQKARVVFDQ 186
SV+ S +++I + GE + A VFD+
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219
Query: 187 MREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246
M D W+ +I + + ++LF M++ G +L SVL C LA L+ G
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279
Query: 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306
Q H +V+ +D D+ + + L+ MY KCG L +F+ +D++ W+++ISG AQ
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337
Query: 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH 366
G +++LK+F M SSG P+ +T+VGVL ACS+ G +++G F SMK Y ++P EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397
Query: 367 YACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426
Y CM+DLLG+AG+++DA+KL+ M EPDA+ W +LLGACR + LAE AAKK++ L+
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457
Query: 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVS 486
P++AG Y LLSNIYA+ ++ V E+R MR R + K PGCSWIEV K++H F D S
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGD-NS 516
Query: 487 HPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLP 546
HP+ + + L ++ L GY P+++FVL D++ E+ SLR+HSEKLA+A+GL+ LP
Sbjct: 517 HPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLP 576
Query: 547 EGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
IR+ KNLR+CGDCH KL SK+ R I++RD R+HHF+DG CSC DYW
Sbjct: 577 IEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630
Score = 106 bits (264), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 11/257 (4%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSR-IDDARRL 59
MP+RNV+SWT M+ Y + + +A L M NV +R + D R L
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRML 181
Query: 60 FDMMP----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRI 115
+ E DV ++ ++ + + G ++ +FDEM + I W ++I G+ N+R
Sbjct: 182 HCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRS 241
Query: 116 DVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWELFKAMPM--KSVVASNSMIL 169
DVA +LF+ M + + T++L T ++ + + + ++ +N+++
Sbjct: 242 DVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVD 301
Query: 170 GLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS 229
+ G ++ A VF+QM+E+D TWS MI + GY E + LF M+ G + N+ +
Sbjct: 302 MYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYIT 361
Query: 230 LISVLSVCASLASLDHG 246
++ VL C+ L+ G
Sbjct: 362 IVGVLFACSHAGLLEDG 378
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDM 62
E +V +A++ + + G +A ++F +M + + W ++GGF ++SR D A LF
Sbjct: 191 ESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKR 250
Query: 63 MP-------------------------------------EKDVVAQTNMVLGYCQDGRVD 85
M ++D++ +V YC+ G ++
Sbjct: 251 MKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLE 310
Query: 86 EGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM----PEKNEVSWTAMLMGYT 141
+ +F++M +++VI+W+TMISG N A KLFE M + N ++ +L +
Sbjct: 311 DALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370
Query: 142 QCGRIQDAWELFKAM-------PMKSVVASNSMILGLGQNGEVQKARVVFDQMR-EKDDA 193
G ++D W F++M P++ MI LG+ G++ A + ++M E D
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVRE--HYGCMIDLLGKAGKLDDAVKLLNEMECEPDAV 428
Query: 194 TWSGMI 199
TW ++
Sbjct: 429 TWRTLL 434
Score = 73.6 bits (179), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 97/206 (47%), Gaps = 21/206 (10%)
Query: 218 MQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE 277
+Q G+ + + ++ C S ++ G + L +++ +VLI MY+K
Sbjct: 52 LQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNL 111
Query: 278 LVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337
L +FD ++++ W ++IS Y++ + +K+L++ M V P+ T VL +
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171
Query: 338 CS--------YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
C+ + G +KEG E S V + ++D+ + G+ EDA+ + +
Sbjct: 172 CNGMSDVRMLHCGIIKEGLE------SDVFVR------SALIDVFAKLGEPEDALSVFDE 219
Query: 390 MPFEPDAIIWGSLLGACRTHMKLDLA 415
M DAI+W S++G + + D+A
Sbjct: 220 M-VTGDAIVWNSIIGGFAQNSRSDVA 244
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/565 (39%), Positives = 336/565 (59%), Gaps = 19/565 (3%)
Query: 52 RIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVIS----WTTMIS 107
RI+ AR +FD M +DVV M+ YC+ G VDE ++F+EM NV+ ++S
Sbjct: 161 RINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVS 220
Query: 108 GYVNNNRIDVARKLFEVMPEKNEVS-----WTAMLMGYTQCGRIQDAWELFKAMPMKSVV 162
+ R ++E + E N+V TA++ Y G + A E F+ M ++++
Sbjct: 221 ACGRTGNMRYNRAIYEFLIE-NDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLF 279
Query: 163 ASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG 222
S +M+ G + G + A+V+FDQ +KD W+ MI Y Y E + +F M G
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282
++ + S+ SV+S CA+L LD + VH+ + + ++ + + LI MY KCG L +
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATR 399
Query: 283 LIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG 342
+F+ +++V W+S+I+ + +G +L +F M V P++VT VGVL CS++G
Sbjct: 400 DVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSG 459
Query: 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402
V+EG++IF SM +Y + PK EHY CMVDL GRA + +A+++IE+MP + +IWGSL
Sbjct: 460 LVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSL 519
Query: 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462
+ ACR H +L+L + AAK++L+LEP + G +L+SNIYA + R+ DV +R+ M ++NV
Sbjct: 520 MSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVF 579
Query: 463 KPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDE 522
K G S I+ K H F D H + I L+++ L+ AGY PD VL DV+E
Sbjct: 580 KEKGLSRIDQNGKSHEFLIGD-KRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEE 638
Query: 523 EEKVHSLRYHSEKLAVAYGLV-------KLPEGVPIRVMKNLRVCGDCHSAIKLISKVMG 575
EEK + +HSEKLA+ +GL+ K GV IR++KNLRVC DCH KL+SKV
Sbjct: 639 EEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV-IRIVKNLRVCEDCHLFFKLVSKVYE 697
Query: 576 REIILRDANRFHHFKDGLCSCRDYW 600
REII+RD RFH +K+GLCSCRDYW
Sbjct: 698 REIIVRDRTRFHCYKNGLCSCRDYW 722
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 123/266 (46%), Gaps = 33/266 (12%)
Query: 175 GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVL 234
G + AR VFD+M +D TW+ MI+ Y R G E LF M+ V + L +++
Sbjct: 160 GRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV 219
Query: 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI--------------------- 273
S C ++ + R ++ L+ +D ++ + L+TMY
Sbjct: 220 SACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLF 279
Query: 274 ----------KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323
KCG L ++IFD KD+V W ++IS Y + +++L+VF EM SG
Sbjct: 280 VSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSG 339
Query: 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383
+ PD V++ V+SAC+ G + + + + + L E + ++++ + G ++
Sbjct: 340 IKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGL-ESELSINNALINMYAKCGGLDAT 398
Query: 384 MKLIEAMPFEPDAIIWGSLLGACRTH 409
+ E MP + + W S++ A H
Sbjct: 399 RDVFEKMP-RRNVVSWSSMINALSMH 423
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 162/357 (45%), Gaps = 51/357 (14%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFI----RDSRIDDA 56
M R+VV+W M+ Y G++ EA LF +M + NV+ ++L + R +
Sbjct: 172 MSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYN 231
Query: 57 RRLFDMMPEKDVVAQTNMVLG----YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
R +++ + E DV T+++ Y G +D RE F +M +N+ T M+SGY
Sbjct: 232 RAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKC 291
Query: 113 NRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM----------PMKSVV 162
R+D A+ +F+ +K+ V WT M+ Y + Q+A +F+ M M SV+
Sbjct: 292 GRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVI 351
Query: 163 AS-----------------------------NSMILGLGQNGEVQKARVVFDQMREKDDA 193
++ N++I + G + R VF++M ++
Sbjct: 352 SACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVV 411
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253
+WS MI G + + LF M++E V N + + VL C+ ++ G+++ A +
Sbjct: 412 SWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASM 471
Query: 254 VRCQFDVDVYVA--SVLITMYIKCGELVKGKLIFDNF-ASKDIVMWNSIISGYAQYG 307
++++ + ++ ++ + L + + ++ + ++V+W S++S +G
Sbjct: 472 TD-EYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHG 527
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 95/184 (51%), Gaps = 9/184 (4%)
Query: 211 VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270
I + ++ G R++ S + +L + +++L G ++H + D +V + +
Sbjct: 95 TILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMD 154
Query: 271 MYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330
MY CG + + +FD + +D+V WN++I Y ++GL +++ K+F EM S VMPD++
Sbjct: 155 MYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMI 214
Query: 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKL 386
L ++SAC TG ++ R I+E +L+E T +V + AG ++ A +
Sbjct: 215 LCNIVSACGRTGNMRYNRAIYE-----FLIENDVRMDTHLLTALVTMYAGAGCMDMAREF 269
Query: 387 IEAM 390
M
Sbjct: 270 FRKM 273
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 129/278 (46%), Gaps = 20/278 (7%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
M RN+ TAMV GY + G + +A +F Q +K++V WT M+ ++ +A R+F
Sbjct: 273 MSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVF 332
Query: 61 DMMP----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISW----TTMISGYVNN 112
+ M + DVV+ +++ G +D+ + + + + S +I+ Y
Sbjct: 333 EEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKC 392
Query: 113 NRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV----VASNSMI 168
+D R +FE MP +N VSW++M+ + G DA LF M ++V V ++
Sbjct: 393 GGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVL 452
Query: 169 LGLGQNGEVQKARVVFDQMREKDDAT-----WSGMIKVYERKGYELEVIDLFTLMQKEGV 223
G +G V++ + +F M ++ + T + M+ ++ R E +++ M V
Sbjct: 453 YGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMP---V 509
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261
N S++S C L+ G+ +++ + D D
Sbjct: 510 ASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHD 547
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 42/220 (19%), Positives = 95/220 (43%), Gaps = 12/220 (5%)
Query: 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288
+++ LS C SL +H +Q+HA ++R + + +++ L +F +
Sbjct: 14 TILEKLSFCKSL---NHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSI 70
Query: 289 AS-KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347
S + +++N + ++ ++ + + G D + + +L A S + EG
Sbjct: 71 PSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEG 130
Query: 348 REIFE-SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406
E+ + K L +P E +D+ G++ A + + M D + W +++
Sbjct: 131 MELHGVAFKIATLCDPFVE--TGFMDMYASCGRINYARNVFDEMSHR-DVVTWNTMI--- 184
Query: 407 RTHMKLDLAEVAAKKLLQLEPKNAGP-YILLSNIYASQGR 445
+ + L + A K +++ N P ++L NI ++ GR
Sbjct: 185 ERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGR 224
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 237/644 (36%), Positives = 350/644 (54%), Gaps = 72/644 (11%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
+V SW +++ G EA F M + +S F I LFD+
Sbjct: 40 DVFSWNSVIADLARSGDSAEALLAFSSMRK---LSLYPTRSSF--PCAIKACSSLFDIFS 94
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEV 124
K Q V GY D + + +I Y +++ ARK+F+
Sbjct: 95 GKQT-HQQAFVFGYQSD-----------------IFVSSALIVMYSTCGKLEDARKVFDE 136
Query: 125 MPEKNEVSWTAMLMGYTQCGRIQDAWELFK----------------AMPMKSVVAS---- 164
+P++N VSWT+M+ GY G DA LFK +M + SV+++
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 165 -------------------------NSMILGLGQNGE--VQKARVVFDQMREKDDATWSG 197
N+++ + GE V AR +FDQ+ +KD +++
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 198 MIKVYERKGYELEVIDLFT-LMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC 256
++ VY + G E ++F L++ + V N +L +VL + +L G+ +H Q++R
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVF 316
+ DV V + +I MY KCG + + FD +K++ W ++I+GY +G K+L++F
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376
Query: 317 HEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR 376
M SGV P+ +T V VL+ACS+ G EG F +MK ++ VEP EHY CMVDLLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436
Query: 377 AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436
AG ++ A LI+ M +PD+IIW SLL ACR H ++LAE++ +L +L+ N G Y+LL
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496
Query: 437 SNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRM 496
S+IYA GR+ DV +R M+ R ++KPPG S +E+ +VH+F D HP+ I
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGD-EEHPQREKIYEF 555
Query: 497 LEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKN 556
L ++ L EAGY ++S V HDVDEEEK +LR HSEKLA+A+G++ G + V+KN
Sbjct: 556 LAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKN 615
Query: 557 LRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
LRVC DCH+ IKLISK++ RE ++RDA RFHHFKDG CSC DYW
Sbjct: 616 LRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 124/294 (42%), Gaps = 87/294 (29%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLF----------------------------WQM 32
+P+RN+VSWT+M+RGY G +A +LF ++
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196
Query: 33 PEKNV---VSWTVMLGGFIRDSRIDD----------------ARRLFDMMPEKDVVAQTN 73
P K + + V+ GF R + + AR++FD + +KD V+ +
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256
Query: 74 MVLGYCQDGRVDEGREIFDEMPKK-----NVISWTTMISGYVNNNRIDVAR----KLFEV 124
++ Y Q G +E E+F + K N I+ +T++ ++ + + + ++ +
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316
Query: 125 MPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVF 184
E + + T+++ Y +CGR++ A + F M K+V + +MI G G +G KA
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA---- 372
Query: 185 DQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA 238
++LF M GVR N+ + +SVL+ C+
Sbjct: 373 ---------------------------LELFPAMIDSGVRPNYITFVSVLAACS 399
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 16/192 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK----NVVSWTVMLGGFIRDSRIDDA 56
M +NV SWTAM+ GY G +A LF M + N +++ +L +
Sbjct: 348 MKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEG 407
Query: 57 RRLFDMMP-----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISGYV 110
R F+ M E + MV + G + + ++ M K + I W+++++
Sbjct: 408 WRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACR 467
Query: 111 NNNRIDVAR----KLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNS 166
+ +++A +LFE + N + + Y GR +D + M + +V
Sbjct: 468 IHKNVELAEISVARLFE-LDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPG 526
Query: 167 MILGLGQNGEVQ 178
L L NGEV
Sbjct: 527 FSL-LELNGEVH 537
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 411 bits (1056), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/618 (36%), Positives = 348/618 (56%), Gaps = 21/618 (3%)
Query: 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIR---DSRIDDARR 58
P RNVVSWT+++ G + G + A F++M + VV + R+ +
Sbjct: 69 PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 128
Query: 59 LFDMMPEK-----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNN 113
+ K DV + YC+ D+ R++FDE+P++N+ +W IS V +
Sbjct: 129 QIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDG 188
Query: 114 RIDVARKLF----EVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKS-----VVAS 164
R A + F + N +++ A L + + +L + ++S V
Sbjct: 189 RPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQL-HGLVLRSGFDTDVSVC 247
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
N +I G+ +++ + ++F +M K+ +W ++ Y + + + L+ +K+ V
Sbjct: 248 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVE 307
Query: 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284
+ + SVLS CA +A L+ GR +HA V+ + ++V S L+ MY KCG + +
Sbjct: 308 TSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQA 367
Query: 285 FDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV--MPDDVTLVGVLSACSYTG 342
FD K++V NS+I GYA G + +L +F EM G P+ +T V +LSACS G
Sbjct: 368 FDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAG 427
Query: 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402
V+ G +IF+SM+S Y +EP EHY+C+VD+LGRAG VE A + I+ MP +P +WG+L
Sbjct: 428 AVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGAL 487
Query: 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462
ACR H K L +AA+ L +L+PK++G ++LLSN +A+ GR+ + +R+ ++ +
Sbjct: 488 QNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIK 547
Query: 463 KPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDE 522
K G SWI V+ +VH F +D SH + I L K+ + AGY PD L+D++E
Sbjct: 548 KGAGYSWITVKNQVHAFQAKD-RSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEE 606
Query: 523 EEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRD 582
EEK + +HSEKLA+A+GL+ LP VPIR+ KNLR+CGDCHS K +S + REII+RD
Sbjct: 607 EEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRD 666
Query: 583 ANRFHHFKDGLCSCRDYW 600
NRFH FKDG+CSC+DYW
Sbjct: 667 NNRFHRFKDGICSCKDYW 684
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 44/312 (14%)
Query: 97 KNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM 156
KN IS ++M G V + RI K + P ++ ++ Y++ + A + +
Sbjct: 14 KNAISASSMRLGRVVHARI---VKTLDSPPPPFLANY--LINMYSKLDHPESARLVLRLT 68
Query: 157 PMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFT 216
P ++VV+ S+I GL QNG A V F +MR
Sbjct: 69 PARNVVSWTSLISGLAQNGHFSTALVEFFEMR---------------------------- 100
Query: 217 LMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276
+EGV N + ASL G+Q+HA V+C +DV+V MY K
Sbjct: 101 ---REGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTR 157
Query: 277 ELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336
+ +FD +++ WN+ IS G ++++ F E P+ +T L+
Sbjct: 158 LRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLN 217
Query: 337 ACSYTGKVKEGREIFE-SMKSKYLVEPKTEHYAC--MVDLLGRAGQVEDAMKLIEAMPFE 393
ACS + G ++ ++S + T+ C ++D G+ Q+ + + M +
Sbjct: 218 ACSDWLHLNLGMQLHGLVLRSGF----DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTK 273
Query: 394 PDAIIWGSLLGA 405
+A+ W SL+ A
Sbjct: 274 -NAVSWCSLVAA 284
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 124/268 (46%), Gaps = 20/268 (7%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFIRDSRIDDA 56
+PERN+ +W A + V +G EA F + N +++ L ++
Sbjct: 169 IPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLG 228
Query: 57 RRLFDMMP----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+L ++ + DV ++ Y + ++ IF EM KN +SW ++++ YV N
Sbjct: 229 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 288
Query: 113 NRIDVARKLF----EVMPEKNEVSWTAML-----MGYTQCGRIQDAWELFKAMPMKSVVA 163
+ + A L+ + + E ++ +++L M + GR A + KA +++
Sbjct: 289 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAV-KACVERTIFV 347
Query: 164 SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
++++ G+ G ++ + FD+M EK+ T + +I Y +G + LF M G
Sbjct: 348 GSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC 407
Query: 224 --RVNFPSLISVLSVCASLASLDHGRQV 249
N+ + +S+LS C+ ++++G ++
Sbjct: 408 GPTPNYMTFVSLLSACSRAGAVENGMKI 435
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 86/170 (50%), Gaps = 14/170 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRD----SRIDDA 56
M +N VSW ++V YV+ +A L+ + + V + M+ + + ++
Sbjct: 270 MGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELG 329
Query: 57 RRL----FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
R + E+ + + +V Y + G +++ + FDEMP+KN+++ ++I GY +
Sbjct: 330 RSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQ 389
Query: 113 NRIDVARKLFEVM------PEKNEVSWTAMLMGYTQCGRIQDAWELFKAM 156
++D+A LFE M P N +++ ++L ++ G +++ ++F +M
Sbjct: 390 GQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSM 439
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/526 (40%), Positives = 326/526 (61%), Gaps = 14/526 (2%)
Query: 87 GREIFDEMPKK-NVISWTTMISGYVNNNRIDVARKLFEVMP-----EKNEVSWTAMLMGY 140
++F ++ K NV W T+I GY A L+ M E + ++ ++
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 141 TQCGRIQDAWELFKAMPMKS-----VVASNSMILGLGQNGEVQKARVVFDQMREKDDATW 195
T ++ E ++ ++S + NS++ G+V A VFD+M EKD W
Sbjct: 132 TTMADVRLG-ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190
Query: 196 SGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
+ +I + G E + L+T M +G++ + +++S+LS CA + +L G++VH +++
Sbjct: 191 NSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIK 250
Query: 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKV 315
+++ ++VL+ +Y +CG + + K +FD K+ V W S+I G A G G++++++
Sbjct: 251 VGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIEL 310
Query: 316 FHEMFSS-GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374
F M S+ G++P ++T VG+L ACS+ G VKEG E F M+ +Y +EP+ EH+ CMVDLL
Sbjct: 311 FKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLL 370
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
RAGQV+ A + I++MP +P+ +IW +LLGAC H DLAE A ++LQLEP ++G Y+
Sbjct: 371 ARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYV 430
Query: 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIM 494
LLSN+YAS+ R+ DV ++RK M + V K PG S +EV +VH F D SHP+ I
Sbjct: 431 LLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGD-KSHPQSDAIY 489
Query: 495 RMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVM 554
L+++ G LR GY P S V DV+EEEK +++ YHSEK+A+A+ L+ PE PI V+
Sbjct: 490 AKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVV 549
Query: 555 KNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
KNLRVC DCH AIKL+SKV REI++RD +RFHHFK+G CSC+DYW
Sbjct: 550 KNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 152/328 (46%), Gaps = 30/328 (9%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQM-------PEKNVVSWTVMLGGFIRDSRIDDA- 56
NV W ++RGY E G A +L+ +M P+ + + + + D R+ +
Sbjct: 84 NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143
Query: 57 -----RRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
R F + + Q +++ Y G V ++FD+MP+K++++W ++I+G+
Sbjct: 144 HSVVIRSGFGSL----IYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 199
Query: 112 NNRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWE----LFKAMPMKSVVA 163
N + + A L+ M K + + ++L + G + + K +++ +
Sbjct: 200 NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 259
Query: 164 SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK-EG 222
SN ++ + G V++A+ +FD+M +K+ +W+ +I G+ E I+LF M+ EG
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEG 319
Query: 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA--SVLITMYIKCGELVK 280
+ + + +L C+ + G + ++ R ++ ++ + ++ + + G++ K
Sbjct: 320 LLPCEITFVGILYACSHCGMVKEGFEYFRRM-REEYKIEPRIEHFGCMVDLLARAGQVKK 378
Query: 281 GKLIFDNFASK-DIVMWNSIISGYAQYG 307
+ + ++V+W +++ +G
Sbjct: 379 AYEYIKSMPMQPNVVIWRTLLGACTVHG 406
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 100/198 (50%), Gaps = 18/198 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV----VSWTVMLGGFIRDSRIDDA 56
MPE+++V+W +++ G+ E G EA L+ +M K + + +L + +
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241
Query: 57 RRLFDMMPEKDV---VAQTNMVLG-YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+R+ M + + + +N++L Y + GRV+E + +FDEM KN +SWT++I G N
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301
Query: 113 NRIDVARKLFEVMPEKN-----EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS--- 164
A +LF+ M E+++ +L + CG +++ +E F+ M + +
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361
Query: 165 --NSMILGLGQNGEVQKA 180
M+ L + G+V+KA
Sbjct: 362 HFGCMVDLLARAGQVKKA 379
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/619 (36%), Positives = 349/619 (56%), Gaps = 49/619 (7%)
Query: 29 FWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGR-VDEG 87
F P V+ + + + R+ +A M+ + + +L C D R + +G
Sbjct: 12 FSSSPTNYVLQTILPISQLCSNGRLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDG 71
Query: 88 REIFDEMPKKNVISWT----TMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQC 143
+ + M K + T ++ Y + ++ ARK+ + MPEKN VSWTAM+ Y+Q
Sbjct: 72 QRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQT 131
Query: 144 GRIQDAWELFKAMPMKSVVASNSMI-------------LGLGQN---------------- 174
G +A +F M M+S N LGLG+
Sbjct: 132 GHSSEALTVFAEM-MRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFV 190
Query: 175 -----------GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
G++++AR +F+ + E+D + + +I Y + G + E +++F + EG+
Sbjct: 191 GSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGM 250
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283
N+ + S+L+ + LA LDHG+Q H ++R + + + LI MY KCG L +
Sbjct: 251 SPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARR 310
Query: 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTG 342
+FDN + + WN+++ GY+++GLG + L++F M V PD VTL+ VLS CS+
Sbjct: 311 LFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGR 370
Query: 343 KVKEGREIFESM-KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401
G IF+ M +Y +P TEHY C+VD+LGRAG++++A + I+ MP +P A + GS
Sbjct: 371 MEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGS 430
Query: 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461
LLGACR H+ +D+ E ++L+++EP+NAG Y++LSN+YAS GR+ DV +R M ++ V
Sbjct: 431 LLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAV 490
Query: 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVD 521
K PG SWI+ E+ +H F D +HP ++ +++I +++AGY PD S VL+DVD
Sbjct: 491 TKEPGRSWIQHEQTLHYFHAND-RTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVD 549
Query: 522 EEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILR 581
EE+K L HSEKLA+ +GL+ EG+PIRV KNLR+C DCH+ K+ SKV RE+ LR
Sbjct: 550 EEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLR 609
Query: 582 DANRFHHFKDGLCSCRDYW 600
D NRFH DG+CSC DYW
Sbjct: 610 DKNRFHQIVDGICSCGDYW 628
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 142/265 (53%), Gaps = 25/265 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFIRDSRIDDA 56
MPE+NVVSWTAM+ Y + G +EA T+F +M + N ++ +L IR S +
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG 172
Query: 57 RRLFDMMP----EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+++ ++ + + ++++ Y + G++ E REIF+ +P+++V+S T +I+GY
Sbjct: 173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQL 232
Query: 113 NRIDVARKLFEVMPEK----NEVSWTAMLMGYTQC-----GRIQDAWELFKAMPMKSVVA 163
+ A ++F + + N V++ ++L + G+ L + +P +V+
Sbjct: 233 GLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVL- 291
Query: 164 SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG- 222
NS+I + G + AR +FD M E+ +W+ M+ Y + G EV++LF LM+ E
Sbjct: 292 QNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKR 351
Query: 223 VRVNFPSLISVLSVCASLASLDHGR 247
V+ + +L++VLS C+ HGR
Sbjct: 352 VKPDAVTLLAVLSGCS------HGR 370
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/461 (43%), Positives = 297/461 (64%)
Query: 140 YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMI 199
Y CG I A +F M + VV+ SM+ G + G V+ AR +FD+M ++ TWS MI
Sbjct: 162 YANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMI 221
Query: 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259
Y + + IDLF M++EGV N ++SV+S CA L +L+ G + + +V+
Sbjct: 222 NGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMT 281
Query: 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEM 319
V++ + + L+ M+ +CG++ K +F+ D + W+SII G A +G K++ F +M
Sbjct: 282 VNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQM 341
Query: 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379
S G +P DVT VLSACS+ G V++G EI+E+MK + +EP+ EHY C+VD+LGRAG+
Sbjct: 342 ISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGK 401
Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439
+ +A I M +P+A I G+LLGAC+ + ++AE L++++P+++G Y+LLSNI
Sbjct: 402 LAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNI 461
Query: 440 YASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEK 499
YA G++ + LR M+++ V KPPG S IE++ K++ FT D HPE I R E+
Sbjct: 462 YACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEE 521
Query: 500 IGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRV 559
I G +R GY ++ DVDEEEK S+ HSEKLA+AYG++K G IR++KNLRV
Sbjct: 522 ILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRV 581
Query: 560 CGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
C DCH+ KLIS+V GRE+I+RD NRFHHF++G+CSCRDYW
Sbjct: 582 CEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 8/209 (3%)
Query: 53 IDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
I A R+F M +DVV+ T+MV GYC+ G V+ RE+FDEMP +N+ +W+ MI+GY N
Sbjct: 168 IAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKN 227
Query: 113 NRIDVARKLFEVMPEKNEVS-WTAMLMGYTQCGRI------QDAWE-LFKAMPMKSVVAS 164
N + A LFE M + V+ T M+ + C + + A+E + K+ +++
Sbjct: 228 NCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG 287
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
+++ + G+++KA VF+ + E D +WS +IK G+ + + F+ M G
Sbjct: 288 TALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI 347
Query: 225 VNFPSLISVLSVCASLASLDHGRQVHAQL 253
+ +VLS C+ ++ G +++ +
Sbjct: 348 PRDVTFTAVLSACSHGGLVEKGLEIYENM 376
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 143/318 (44%), Gaps = 42/318 (13%)
Query: 183 VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV---RVNFPSLISVLSVCAS 239
+F Q++ + ++ +I+ + + +T M K + + FP LI S
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASS---E 129
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
+ + G Q H+Q+VR F DVYV + L+ MY CG + IF +D+V W S+
Sbjct: 130 MECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSM 189
Query: 300 ISGYAQYGLGEKSLKVFHEM-----FS--------------------------SGVMPDD 328
++GY + G+ E + ++F EM F+ GV+ ++
Sbjct: 190 VAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANE 249
Query: 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388
+V V+S+C++ G ++ G +E + ++ A +VD+ R G +E A+ + E
Sbjct: 250 TVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTA-LVDMFWRCGDIEKAIHVFE 308
Query: 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE--PKNAGPYILLSNIYASQGRF 446
+P E D++ W S++ H A +++ L P++ +LS + G
Sbjct: 309 GLP-ETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSAC-SHGGLV 366
Query: 447 HDVAELRKNMRKRNVIKP 464
E+ +NM+K + I+P
Sbjct: 367 EKGLEIYENMKKDHGIEP 384
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDM 62
+ +V ++V Y G I AG +F QM ++VVSWT M+ G+ + +++AR +FD
Sbjct: 149 QNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDE 208
Query: 63 MPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTT----MISGYVNNNRIDVA 118
MP +++ + M+ GY ++ ++ ++F+ M ++ V++ T +IS + ++
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 119 RKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQN 174
+ +E + + N + TA++ + +CG I+ A +F+ +P ++ +S+I GL +
Sbjct: 269 ERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVH 328
Query: 175 GEVQKARVVFDQMRE----KDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
G KA F QM D T++ ++ G + ++++ M+K+
Sbjct: 329 GHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKD 379
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/261 (20%), Positives = 114/261 (43%), Gaps = 27/261 (10%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRD----SRIDDA 56
MP RN+ +W+ M+ GY + +A LF M + VV+ ++ I ++
Sbjct: 209 MPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFG 268
Query: 57 RRLFDMMPEKDVVAQTNMVLG------YCQDGRVDEGREIFDEMPKKNVISWTTMISGYV 110
R ++ + + + N++LG + + G +++ +F+ +P+ + +SW+++I G
Sbjct: 269 ERAYEYVVKSHMT--VNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLA 326
Query: 111 NNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNS 166
+ A F M +V++TA+L + G ++ E+++ M +
Sbjct: 327 VHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRL 386
Query: 167 MILG-----LGQNGEVQKARVVFDQMREKDDATWSGMI----KVYERKGYELEVIDLFTL 217
G LG+ G++ +A +M K +A G + K+Y+ V ++
Sbjct: 387 EHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIK 446
Query: 218 MQKEGVRVNFPSLISVLSVCA 238
++ E + L+S + CA
Sbjct: 447 VKPE--HSGYYVLLSNIYACA 465
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 105/247 (42%), Gaps = 16/247 (6%)
Query: 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK-- 280
+R P L ++L C+S + L + +H L+R DV+VAS L+ + + K
Sbjct: 9 LRFKHPKL-ALLQSCSSFSDL---KIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPT 64
Query: 281 -----GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL 335
IF + ++ ++N +I ++ K+ + +M S + PD++T ++
Sbjct: 65 NLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLI 124
Query: 336 SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD 395
A S V G + S ++ + +V + G + A ++ M F D
Sbjct: 125 KASSEMECVLVGEQT-HSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFR-D 182
Query: 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455
+ W S++ + K + E A + ++ +N + ++ N YA F +L +
Sbjct: 183 VVSWTSMVAG---YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEF 239
Query: 456 MRKRNVI 462
M++ V+
Sbjct: 240 MKREGVV 246
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/608 (36%), Positives = 344/608 (56%), Gaps = 20/608 (3%)
Query: 12 MVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQ 71
++R Y + A +F ++PE+NV+ VM+ ++ + + ++F M +V
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 72 TNM---VLGYCQ-DGRVDEGREIFDEMPKKNVISW----TTMISGYVNNNRIDVARKLFE 123
VL C G + GR+I K + S ++S Y + AR + +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 124 VMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV---VASNSMILGLGQNGEVQKA 180
M ++ VSW ++++GY Q R DA E+ + M + + + +L N +
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 259
Query: 181 RVV---FDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC 237
V F +M +K +W+ MI VY + +E ++L++ M+ +G + S+ SVL C
Sbjct: 260 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPAC 319
Query: 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWN 297
++L G+++H + R + ++ + + LI MY KCG L K + +F+N S+D+V W
Sbjct: 320 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWT 379
Query: 298 SIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357
++IS Y G G ++ +F ++ SG++PD + V L+ACS+ G ++EGR F+ M
Sbjct: 380 AMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 439
Query: 358 YLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEV 417
Y + P+ EH ACMVDLLGRAG+V++A + I+ M EP+ +WG+LLGACR H D+ +
Sbjct: 440 YKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLL 499
Query: 418 AAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVH 477
AA KL QL P+ +G Y+LLSNIYA GR+ +V +R M+ + + K PG S +EV + +H
Sbjct: 500 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 559
Query: 478 MFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLA 537
F D SHP+ I R L+ + ++E GY PDS LHDV+EE+K L HSEKLA
Sbjct: 560 TFLVGD-RSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLA 618
Query: 538 VAYGLVKLPE-----GVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDG 592
+ + L+ E IR+ KNLR+CGDCH A KLIS++ REII+RD NRFH F+ G
Sbjct: 619 IVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFG 678
Query: 593 LCSCRDYW 600
+CSC DYW
Sbjct: 679 VCSCGDYW 686
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 2/169 (1%)
Query: 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306
R VH++++ + + L+ Y ++ + +FD +++++ N +I Y
Sbjct: 59 RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNN 118
Query: 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH 366
G + +KVF M V PD T VL ACS +G + GR+I S +K +
Sbjct: 119 GFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGS-ATKVGLSSTLFV 177
Query: 367 YACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLA 415
+V + G+ G + +A +++ M D + W SL+ + + D A
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMS-RRDVVSWNSLVVGYAQNQRFDDA 225
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 34/230 (14%)
Query: 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64
N++ A++ Y + G + +A +F M ++VVSWT M+ + R DA LF +
Sbjct: 343 NLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQ 402
Query: 65 EK----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+ D +A + G ++EGR F M
Sbjct: 403 DSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH----------------------- 439
Query: 121 LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQ-NGEVQK 179
+++ P ++ L+G + G++++A+ + M M+ +LG + + +
Sbjct: 440 -YKITPRLEHLACMVDLLG--RAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDI 496
Query: 180 ARVVFD---QMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+ D Q+ + + + +Y + G EV ++ +M+ +G++ N
Sbjct: 497 GLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKN 546
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVV----SWTVMLGGFIRDSRIDDA 56
M R+VVSWTAM+ Y G +A LF ++ + +V ++ L +++
Sbjct: 370 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429
Query: 57 RRLFDMM-------PEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISG 108
R F +M P + +A +LG + G+V E +M + N W ++
Sbjct: 430 RSCFKLMTDHYKITPRLEHLACMVDLLG--RAGKVKEAYRFIQDMSMEPNERVWGALLGA 487
Query: 109 YVNNNRIDV----ARKLFEVMPEKNEVSWTAMLMG-YTQCGRIQDAWELFKAMPMKSV 161
++ D+ A KLF++ PE++ + +L Y + GR ++ + M K +
Sbjct: 488 CRVHSDTDIGLLAADKLFQLAPEQS--GYYVLLSNIYAKAGRWEEVTNIRNIMKSKGL 543
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 220/548 (40%), Positives = 333/548 (60%), Gaps = 17/548 (3%)
Query: 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLF-E 123
E DV ++ Y + G V+ R++FD M +++++SW TMI Y N A +F E
Sbjct: 93 EGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLE 152
Query: 124 VMPEKNEVSWTAMLMGYTQCGRIQDAWELFK--AMPMKSVVASN----SMILGL-GQNGE 176
+ E + S + + CG DA E K + +K+ + N + +L L + G
Sbjct: 153 MRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGM 212
Query: 177 VQKARVVFDQMREKDDATWSGMIKVY-ERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235
++ A VF+ M++K TWS M+ Y + K YE E + L+ Q+ + N +L SV+
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE-EALLLYRRAQRMSLEQNQFTLSSVIC 271
Query: 236 VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM 295
C++LA+L G+Q+HA + + F +V+VAS + MY KCG L + +IF K++ +
Sbjct: 272 ACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLEL 331
Query: 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355
WN+IISG+A++ ++ + +F +M G+ P++VT +LS C +TG V+EGR F+ M+
Sbjct: 332 WNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMR 391
Query: 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLA 415
+ Y + P HY+CMVD+LGRAG + +A +LI+++PF+P A IWGSLL +CR + L+LA
Sbjct: 392 TTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELA 451
Query: 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKK 475
EVAA+KL +LEP+NAG ++LLSNIYA+ ++ ++A+ RK +R +V K G SWI+++ K
Sbjct: 452 EVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDK 511
Query: 476 VHMFTGRDCVSHPEHPMIMRMLEKIGGL---LREAGYCPDSSFVLHDVDEEEKVHSLRYH 532
VH F+ V HP I + + L R+ GY P LHDV+ +K L H
Sbjct: 512 VHTFS----VGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQH 567
Query: 533 SEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDG 592
SEKLA+ +GL+ LPE P+R+MKNLR+C DCH +K S R II+RD NRFHHF DG
Sbjct: 568 SEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDG 627
Query: 593 LCSCRDYW 600
CSC D+W
Sbjct: 628 HCSCGDFW 635
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 134/320 (41%), Gaps = 64/320 (20%)
Query: 120 KLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQK 179
K+ + E + ++ Y++CG ++ A ++F M +S+V+
Sbjct: 86 KIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVS---------------- 129
Query: 180 ARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239
W+ MI +Y R E E +D+F M+ EG + + ++ SVLS C
Sbjct: 130 ---------------WNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGV 174
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
+++H V+ D+++YV + L+ +Y KCG + +F++ K V W+S+
Sbjct: 175 NCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSM 234
Query: 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE------- 352
++GY Q E++L ++ + + TL V+ ACS + EG+++
Sbjct: 235 VAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGF 294
Query: 353 ------------------SMKSKYLV-----EPKTEHYACMVDLLGRAGQVEDAMKLIEA 389
S++ Y++ E E + ++ + + ++ M L E
Sbjct: 295 GSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEK 354
Query: 390 MP---FEPDAIIWGSLLGAC 406
M P+ + + SLL C
Sbjct: 355 MQQDGMHPNEVTFSSLLSVC 374
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 160/331 (48%), Gaps = 32/331 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRID----DA 56
M ER++VSW M+ Y M +EA +F +M + + + ++ +
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181
Query: 57 RRLFDMMPEK----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
++L + + ++ T ++ Y + G + + ++F+ M K+ ++W++M++GYV N
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241
Query: 113 NRIDVA----RKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMI 168
+ A R+ + E+N+ + ++++ + + + ++ A+ KS SN +
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQM-HAVICKSGFGSNVFV 300
Query: 169 LG-----LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
+ G ++++ ++F +++EK+ W+ +I + + EV+ LF MQ++G+
Sbjct: 301 ASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGM 360
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDV--DVYVASVLITMYIKCG----- 276
N + S+LSVC ++ GR+ +L+R + + +V S ++ + + G
Sbjct: 361 HPNEVTFSSLLSVCGHTGLVEEGRRFF-KLMRTTYGLSPNVVHYSCMVDILGRAGLLSEA 419
Query: 277 -ELVKGKLIFDNFASKDIVMWNSIISGYAQY 306
EL+K + FD AS +W S+++ Y
Sbjct: 420 YELIKS-IPFDPTAS----IWGSLLASCRVY 445
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 89/173 (51%), Gaps = 2/173 (1%)
Query: 233 VLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292
+L +CA ++ + H +++R + DV + +VLI Y KCG + + +FD +
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352
+V WN++I Y + + ++L +F EM + G + T+ VLSAC E +++
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKL-H 185
Query: 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ K ++ ++DL + G ++DA+++ E+M + ++ W S++
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAG 237
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust.
Identities = 233/637 (36%), Positives = 359/637 (56%), Gaps = 59/637 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFIR------- 49
M +VV+W ++++GYV+ M EA F M + + VS T ++ R
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 405
Query: 50 ------------DSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKK 97
DS + L DM + ++ C GR F M K
Sbjct: 406 MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLT---------CYMGRA------FLRMHDK 450
Query: 98 NVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM- 156
++ISWTT+I+GY N+ A +LF + +K M + G I A + K+M
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAKKR------MEIDEMILGSILRASSVLKSML 504
Query: 157 ------------PMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYER 204
+ V N ++ G+ + A VF+ ++ KD +W+ MI
Sbjct: 505 IVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSAL 564
Query: 205 KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYV 264
G E E ++LF M + G+ + +L+ +LS ASL++L+ GR++H L+R F ++ +
Sbjct: 565 NGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSI 624
Query: 265 ASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324
A ++ MY CG+L K +FD K ++ + S+I+ Y +G G+ ++++F +M V
Sbjct: 625 AVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENV 684
Query: 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384
PD ++ + +L ACS+ G + EGR + M+ +Y +EP EHY C+VD+LGRA V +A
Sbjct: 685 SPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAF 744
Query: 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444
+ ++ M EP A +W +LL ACR+H + ++ E+AA++LL+LEPKN G +L+SN++A QG
Sbjct: 745 EFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQG 804
Query: 445 RFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIG-GL 503
R++DV ++R M+ + K PGCSWIE++ KVH FT RD SHPE I L ++ L
Sbjct: 805 RWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARD-KSHPESKEIYEKLSEVTRKL 863
Query: 504 LREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDC 563
RE GY D+ FVLH+VDE EKV L HSE++A+AYGL++ P+ +R+ KNLRVC DC
Sbjct: 864 EREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDC 923
Query: 564 HSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
H+ KL+SK+ R+I++RDANRFHHF+ GLCSC D W
Sbjct: 924 HTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 155/305 (50%), Gaps = 13/305 (4%)
Query: 58 RLFDMMP--EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRI 115
R+F P E D +A +V Y + G +D+ ++FDEMP + +W TMI YV+N
Sbjct: 105 RIFKTFPSFELDFLA-GKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEP 163
Query: 116 DVARKLFEVMPEKNE----VSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS----NSM 167
A L+ M + S+ A+L + I+ EL + ++ N++
Sbjct: 164 ASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNAL 223
Query: 168 ILGLGQNGEVQKARVVFDQMREKDDAT-WSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+ +N ++ AR +FD +EK DA W+ ++ Y G LE ++LF M G N
Sbjct: 224 VSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPN 283
Query: 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQ-FDVDVYVASVLITMYIKCGELVKGKLIF 285
+++S L+ C + G+++HA +++ ++YV + LI MY +CG++ + + I
Sbjct: 284 SYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERIL 343
Query: 286 DNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK 345
+ D+V WNS+I GY Q + +++L+ F +M ++G D+V++ +++A +
Sbjct: 344 RQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 403
Query: 346 EGREI 350
G E+
Sbjct: 404 AGMEL 408
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 9/257 (3%)
Query: 152 LFKAMPMKSV-VASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELE 210
+FK P + + ++ G+ G + A VFD+M ++ W+ MI Y G
Sbjct: 106 IFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPAS 165
Query: 211 VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270
+ L+ M+ EGV + S ++L CA L + G ++H+ LV+ + ++ + L++
Sbjct: 166 ALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVS 225
Query: 271 MYIKCGELVKGKLIFDNFASK-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329
MY K +L + +FD F K D V+WNSI+S Y+ G ++L++F EM +G P+
Sbjct: 226 MYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSY 285
Query: 330 TLVGVLSACSYTGKVKEGREIFES-MKSKYLVEPKTEHYAC--MVDLLGRAGQVEDAMKL 386
T+V L+AC K G+EI S +KS +E Y C ++ + R G++ A ++
Sbjct: 286 TIVSALTACDGFSYAKLGKEIHASVLKSS---THSSELYVCNALIAMYTRCGKMPQAERI 342
Query: 387 IEAMPFEPDAIIWGSLL 403
+ M D + W SL+
Sbjct: 343 LRQMN-NADVVTWNSLI 358
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 102/443 (23%), Positives = 202/443 (45%), Gaps = 52/443 (11%)
Query: 12 MVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDV--- 68
+V Y + G + +A +F +MP++ +W M+G ++ + A L+ M + V
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 181
Query: 69 VAQTNMVLGYCQDGR-VDEGREIFDEMPKKNVISW----TTMISGYVNNNRIDVARKLFE 123
++ +L C R + G E+ + K S ++S Y N+ + AR+LF+
Sbjct: 182 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 241
Query: 124 VMPEKNE-VSWTAMLMGYTQCGRIQDAWELFKAMPM------------------------ 158
EK + V W ++L Y+ G+ + ELF+ M M
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAK 301
Query: 159 --KSVVAS--------------NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVY 202
K + AS N++I + G++ +A + QM D TW+ +IK Y
Sbjct: 302 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGY 361
Query: 203 ERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDV 262
+ E ++ F+ M G + + S+ S+++ L++L G ++HA +++ +D ++
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421
Query: 263 YVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS 322
V + LI MY KC F KD++ W ++I+GYAQ ++L++F ++
Sbjct: 422 QVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKK 481
Query: 323 GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382
+ D++ L +L A S + +EI + K L++ ++ +VD+ G+ +
Sbjct: 482 RMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNE--LVDVYGKCRNMGY 539
Query: 383 AMKLIEAMPFEPDAIIWGSLLGA 405
A ++ E++ + D + W S++ +
Sbjct: 540 ATRVFESIKGK-DVVSWTSMISS 561
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 5/214 (2%)
Query: 233 VLSVCASLASLDHGRQVHAQLVRC--QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290
VL +C ++ GRQ+H+++ + F++D ++A L+ MY KCG L + +FD
Sbjct: 86 VLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPD 144
Query: 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
+ WN++I Y G +L ++ M GV + +L AC+ ++ G E+
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204
Query: 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHM 410
S+ K +V + + + A +L + + DA++W S+L + T
Sbjct: 205 -HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSG 263
Query: 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444
K L + + + + Y ++S + A G
Sbjct: 264 K-SLETLELFREMHMTGPAPNSYTIVSALTACDG 296
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/540 (38%), Positives = 325/540 (60%), Gaps = 42/540 (7%)
Query: 103 TTMISGYVNNNRIDVARKLFEVMPEKN---EVSWTAMLMGYTQCGRIQDAWELFKAM--- 156
+ +I+ + R+D+ARK+F+ + + + E W AM +GY++ G +DA ++ M
Sbjct: 171 SKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCS 230
Query: 157 -----------PMKSVVASNSMILGLGQNGEVQK-------------------------A 180
+K+ V + +G G + ++ K A
Sbjct: 231 FIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDA 290
Query: 181 RVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240
R VFD M E++ TW+ +I V +K E+ +LF MQ+E + ++ +L ++L C+ +
Sbjct: 291 RKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRV 350
Query: 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSII 300
A+L G+++HAQ+++ + DV + + L+ MY KCGE+ + +FD +KD+ WN ++
Sbjct: 351 AALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIML 410
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+ YA G E+ + +F M SGV PD +T V +LS CS TG + G +FE MK+++ V
Sbjct: 411 NCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRV 470
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
P EHYAC+VD+LGRAG++++A+K+IE MPF+P A IWGSLL +CR H + + E+AAK
Sbjct: 471 SPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAK 530
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
+L LEP N G Y+++SNIYA + +V ++R+ M++R V K GCSW++V+ K+ +F
Sbjct: 531 ELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 590
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAY 540
++ ++ + ++GY P++S VLHDVDEE K + + HSE+LA Y
Sbjct: 591 AGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTY 650
Query: 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
L+ EGVPIR+ KNLRVC DCHS +K++S+V R I+LRD RFHHF DG+CSC+DYW
Sbjct: 651 SLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 144/318 (45%), Gaps = 20/318 (6%)
Query: 9 WTAMVRGYVEEGMITEAGTLFWQM----PEKNVVSWTVMLGGFI--RDSRIDDA--RRLF 60
W AM GY G +A ++ M E S +V L + +D R+ ++
Sbjct: 204 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 263
Query: 61 DMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARK 120
+ D V ++ Y + G D+ R++FD M ++NV++W ++IS R+
Sbjct: 264 KRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFN 323
Query: 121 LFEVMPEKN-EVSWTAMLMGYTQCGRIQDAW-------ELFKAMPMKSVVASNSMILGLG 172
LF M E+ SW + C R+ ++ K+ V NS++ G
Sbjct: 324 LFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYG 383
Query: 173 QNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLIS 232
+ GEV+ +R VFD M KD A+W+ M+ Y G EVI+LF M + GV + + ++
Sbjct: 384 KCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVA 443
Query: 233 VLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA--SVLITMYIKCGELVKGKLIFDNFAS 290
+LS C+ ++G + ++ + +F V + + L+ + + G++ + + +
Sbjct: 444 LLSGCSDTGLTEYGLSLFERM-KTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPF 502
Query: 291 K-DIVMWNSIISGYAQYG 307
K +W S+++ +G
Sbjct: 503 KPSASIWGSLLNSCRLHG 520
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 22/239 (9%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV-VSWTVMLGGFIRDSRI------ 53
M ERNVV+W +++ ++ + E LF +M E+ + SW + SR+
Sbjct: 297 MSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTG 356
Query: 54 -DDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ ++ + DV +++ Y + G V+ R +FD M K++ SW M++ Y N
Sbjct: 357 KEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAIN 416
Query: 113 NRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS---- 164
I+ LFE M E + +++ A+L G + G + LF+ M + V+
Sbjct: 417 GNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEH 476
Query: 165 -NSMILGLGQNGEVQKARVVFDQMREKDDAT-WSGMIKVYERKGY----ELEVIDLFTL 217
++ LG+ G++++A V + M K A+ W ++ G E+ +LF L
Sbjct: 477 YACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVL 535
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 233 VLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK 291
+L C S SL HG ++ + ++ + + S LIT++ C L + IFD+
Sbjct: 137 LLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDS 196
Query: 292 DIV---MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348
++ +W ++ GY++ G +L V+ +M S + P + ++ L AC ++ GR
Sbjct: 197 SLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGR 256
Query: 349 EIFESM-KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404
I + K K V+ Y ++ L +G +DA K+ + M E + + W SL+
Sbjct: 257 GIHAQIVKRKEKVDQVV--YNVLLKLYMESGLFDDARKVFDGMS-ERNVVTWNSLIS 310
>sp|O64766|PP185_ARATH Pentatricopeptide repeat-containing protein At2g35030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2
SV=1
Length = 627
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 194/506 (38%), Positives = 315/506 (62%), Gaps = 4/506 (0%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM 63
+NVV+WTAMV GY+ ++ A LF +MPE+NVVSW M+ G+ + RID A LFD M
Sbjct: 107 KNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEM 166
Query: 64 PEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFE 123
PE+++V+ +MV Q GR+DE +F+ MP+++V+SWT M+ G N ++D AR+LF+
Sbjct: 167 PERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFD 226
Query: 124 VMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVV 183
MPE+N +SW AM+ GY Q RI +A +LF+ MP + + N+MI G +N E+ KA +
Sbjct: 227 CMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKACGL 286
Query: 184 FDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG-VRVNFPSLISVLSVCASLAS 242
FD+M EK+ +W+ MI Y E +++F+ M ++G V+ N + +S+LS C+ LA
Sbjct: 287 FDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAG 346
Query: 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN--FASKDIVMWNSII 300
L G+Q+H + + + V S L+ MY K GEL+ + +FDN +D++ WNS+I
Sbjct: 347 LVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMI 406
Query: 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+ YA +G G+++++++++M G P VT + +L ACS+ G V++G E F+ + +
Sbjct: 407 AVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESL 466
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAK 420
+ EHY C+VDL GRAG+++D I +G++L AC H ++ +A+ K
Sbjct: 467 PLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVK 526
Query: 421 KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFT 480
K+L+ +AG Y+L+SNIYA+ G+ + AE+R M+++ + K PGCSW++V K+ H+F
Sbjct: 527 KVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFV 586
Query: 481 GRDCVSHPEHPMIMRMLEKIGGLLRE 506
D SHP+ + +L + +R+
Sbjct: 587 VGD-KSHPQFEALDSILSDLRNKMRK 611
Score = 205 bits (521), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 210/370 (56%), Gaps = 12/370 (3%)
Query: 43 MLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEM-PKKNVIS 101
++G + +I +AR+LFD +PE+DVV T+++ GY + G + E RE+FD + +KNV++
Sbjct: 52 LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111
Query: 102 WTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV 161
WT M+SGY+ + ++ +A LF+ MPE+N VSW M+ GY Q GRI A ELF MP +++
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 171
Query: 162 VASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
V+ NSM+ L Q G + +A +F++M +D +W+ M+ + G E LF M +
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPER 231
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281
+ +++ ++I+ + + D QL + + D + +IT +I+ E+ K
Sbjct: 232 NI-ISWNAMITGYAQNNRIDEAD-------QLFQVMPERDFASWNTMITGFIRNREMNKA 283
Query: 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSY 340
+FD K+++ W ++I+GY + E++L VF +M G V P+ T V +LSACS
Sbjct: 284 CGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSD 343
Query: 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE-AMPFEPDAIIW 399
+ EG++I + + SK + + + ++++ ++G++ A K+ + + + D I W
Sbjct: 344 LAGLVEGQQIHQ-LISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISW 402
Query: 400 GSLLGACRTH 409
S++ H
Sbjct: 403 NSMIAVYAHH 412
>sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580
OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1
Length = 882
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/618 (35%), Positives = 364/618 (58%), Gaps = 21/618 (3%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQ-----MPEKNVVSWTVMLGGFIRDSRIDD 55
M R+ VS+ M+ GY++ M+ E+ +F + P+ VS + G +RD +
Sbjct: 268 MDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSL-- 325
Query: 56 ARRLFDMMPEKDVVAQTN----MVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVN 111
A+ +++ M + V ++ ++ Y + G + R++F+ M K+ +SW ++ISGY+
Sbjct: 326 AKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQ 385
Query: 112 NNRIDVARKLFEVM----PEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVA 163
+ + A KLF++M + + +++ ++ T+ ++ L K+ +
Sbjct: 386 SGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSV 445
Query: 164 SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
SN++I + GEV + +F M D TW+ +I R G + + T M+K V
Sbjct: 446 SNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEV 505
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283
+ + + L +CASLA+ G+++H L+R ++ ++ + + LI MY KCG L
Sbjct: 506 VPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSR 565
Query: 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343
+F+ + +D+V W +I Y YG GEK+L+ F +M SG++PD V + ++ ACS++G
Sbjct: 566 VFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGL 625
Query: 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
V EG FE MK+ Y ++P EHYAC+VDLL R+ ++ A + I+AMP +PDA IW S+L
Sbjct: 626 VDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVL 685
Query: 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIK 463
ACRT ++ AE ++++++L P + G IL SN YA+ ++ V+ +RK+++ +++ K
Sbjct: 686 RACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITK 745
Query: 464 PPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDV-DE 522
PG SWIEV K VH+F+ D S P+ I + LE + L+ + GY PD V ++ +E
Sbjct: 746 NPGYSWIEVGKNVHVFSSGD-DSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEE 804
Query: 523 EEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRD 582
EEK + HSE+LA+A+GL+ G P++VMKNLRVCGDCH KLISK++GREI++RD
Sbjct: 805 EEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRD 864
Query: 583 ANRFHHFKDGLCSCRDYW 600
ANRFH FKDG CSC+D W
Sbjct: 865 ANRFHLFKDGTCSCKDRW 882
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/424 (24%), Positives = 211/424 (49%), Gaps = 25/424 (5%)
Query: 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQM------PEKNVVSWTVMLGGFIRDSRIDD 55
P +NV W +++R + + G+ EA + ++ P+K + + D+ + D
Sbjct: 67 PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126
Query: 56 A--RRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNN 113
++ DM E D+ +V Y + G + R++FDEMP ++++SW ++ISGY ++
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG 186
Query: 114 RIDVARKLFE------VMPEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVA 163
+ A +++ ++P+ VS ++L + ++ L K+ VV
Sbjct: 187 YYEEALEIYHELKNSWIVPDSFTVS--SVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVV 244
Query: 164 SNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
+N ++ + AR VFD+M +D +++ MI Y + E + +F L +
Sbjct: 245 NNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-LENLDQF 303
Query: 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283
+ + ++ SVL C L L + ++ +++ F ++ V ++LI +Y KCG+++ +
Sbjct: 304 KPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARD 363
Query: 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343
+F++ KD V WNSIISGY Q G +++K+F M D +T + ++S +
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLAD 423
Query: 344 VKEGREIFES-MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402
+K G+ + + +KS ++ + ++D+ + G+V D++K+ +M D + W ++
Sbjct: 424 LKFGKGLHSNGIKSGICIDLSVSN--ALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTV 480
Query: 403 LGAC 406
+ AC
Sbjct: 481 ISAC 484
Score = 102 bits (254), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 134/256 (52%), Gaps = 5/256 (1%)
Query: 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254
W+ +I+ + + G E ++ + +++ V + + SV+ CA L + G V+ Q++
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133
Query: 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLK 314
F+ D++V + L+ MY + G L + + +FD +D+V WNS+ISGY+ +G E++L+
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193
Query: 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374
++HE+ +S ++PD T+ VL A VK+G+ + K V +V +
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGL-HGFALKSGVNSVVVVNNGLVAMY 252
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
+ + DA ++ + M D++ + +++ ++KL++ E + + L+ + +
Sbjct: 253 LKFRRPTDARRVFDEMDVR-DSVSYNTMICG---YLKLEMVEESVRMFLENLDQFKPDLL 308
Query: 435 LLSNIYASQGRFHDVA 450
+S++ + G D++
Sbjct: 309 TVSSVLRACGHLRDLS 324
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 216/619 (34%), Positives = 349/619 (56%), Gaps = 24/619 (3%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPER++VSW +V GY + GM A + M E+N+ + + + A RL
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAV---SALRLI 252
Query: 61 DMMPEKDVVA-----------QTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGY 109
+ E A T +V Y + G ++ R++FD M ++NV+SW +MI Y
Sbjct: 253 SVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAY 312
Query: 110 VNNNRIDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPM----KSV 161
V N A +F+ M ++ +VS L G ++ + K ++V
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 162 VASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
NS+I + EV A +F +++ + +W+ MI + + G ++ ++ F+ M+
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSR 432
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281
V+ + + +SV++ A L+ H + +H ++R D +V+V + L+ MY KCG ++
Sbjct: 433 TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIA 492
Query: 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341
+LIFD + + + WN++I GY +G G+ +L++F EM + P+ VT + V+SACS++
Sbjct: 493 RLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552
Query: 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401
G V+ G + F MK Y +E +HY MVDLLGRAG++ +A I MP +P ++G+
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612
Query: 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461
+LGAC+ H ++ AE AA++L +L P + G ++LL+NIY + + V ++R +M ++ +
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVD 521
K PGCS +E++ +VH F +HP+ I LEK+ ++EAGY PD++ VL V+
Sbjct: 673 RKTPGCSMVEIKNEVHSFFS-GSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL-GVE 730
Query: 522 EEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILR 581
+ K L HSEKLA+++GL+ G I V KNLRVC DCH+A K IS V GREI++R
Sbjct: 731 NDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVR 790
Query: 582 DANRFHHFKDGLCSCRDYW 600
D RFHHFK+G CSC DYW
Sbjct: 791 DMQRFHHFKNGACSCGDYW 809
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 200/448 (44%), Gaps = 51/448 (11%)
Query: 10 TAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF------DMM 63
T +V + G + EA +F + K V + ML GF + S +D A + F D+
Sbjct: 73 TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132
Query: 64 P---------------------------------EKDVVAQTNMVLGYCQDGRVDEGREI 90
P D+ A T + Y + +V+E R++
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKV 192
Query: 91 FDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNE----VSWTAMLMGYTQCGRI 146
FD MP+++++SW T+++GY N +A ++ + M E+N ++ ++L + I
Sbjct: 193 FDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLI 252
Query: 147 QDAWELFKAMPMKS-----VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKV 201
E+ M+S V S +++ + G ++ AR +FD M E++ +W+ MI
Sbjct: 253 SVGKEI-HGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDA 311
Query: 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261
Y + E + +F M EGV+ S++ L CA L L+ GR +H V D +
Sbjct: 312 YVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN 371
Query: 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321
V V + LI+MY KC E+ +F S+ +V WN++I G+AQ G +L F +M S
Sbjct: 372 VSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRS 431
Query: 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381
V PD T V V++A + + I + + ++ +VD+ + G +
Sbjct: 432 RTVKPDTFTYVSVITAIAELSITHHAKWI-HGVVMRSCLDKNVFVTTALVDMYAKCGAIM 490
Query: 382 DAMKLIEAMPFEPDAIIWGSLLGACRTH 409
A +LI M E W +++ TH
Sbjct: 491 IA-RLIFDMMSERHVTTWNAMIDGYGTH 517
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 152/294 (51%), Gaps = 20/294 (6%)
Query: 71 QTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMP---- 126
QT +V +C+ G VDE +F+ + K + + TM+ G+ + +D A + F M
Sbjct: 72 QTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDV 131
Query: 127 EKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGL----------GQNGE 176
E ++T +L CG D EL + ++ + L L + +
Sbjct: 132 EPVVYNFTYLL---KVCG---DEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQ 185
Query: 177 VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236
V +AR VFD+M E+D +W+ ++ Y + G +++ M +E ++ +F +++SVL
Sbjct: 186 VNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPA 245
Query: 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296
++L + G+++H +R FD V +++ L+ MY KCG L + +FD +++V W
Sbjct: 246 VSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSW 305
Query: 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
NS+I Y Q ++++ +F +M GV P DV+++G L AC+ G ++ GR I
Sbjct: 306 NSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFI 359
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 233 VLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292
+L C+SL L RQ+ + + + + + L++++ + G + + +F+ SK
Sbjct: 43 LLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKL 99
Query: 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352
V++++++ G+A+ +K+L+ F M V P +L C +++ G+EI
Sbjct: 100 NVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159
Query: 353 SM-KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ KS + ++ + ++ + QV +A K+ + MP E D + W +++
Sbjct: 160 LLVKSGFSLDLFA--MTGLENMYAKCRQVNEARKVFDRMP-ERDLVSWNTIVAG 210
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis
thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 400 bits (1027), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/642 (34%), Positives = 348/642 (54%), Gaps = 58/642 (9%)
Query: 11 AMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVA 70
A++ Y + I A F + +NVV W VML + + ++ R+F M +++V
Sbjct: 429 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 488
Query: 71 -----------------------------QTNMVLG----------YCQDGRVDEGREIF 91
+TN L Y + G++D +I
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548
Query: 92 DEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEK----------NEVSWTAMLMGYT 141
K+V+SWTTMI+GY N D A F M ++ N VS A L
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608
Query: 142 QCGRI--QDAWELFKA-MPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM 198
+ +I Q F + +P + N+++ + G+++++ + F+Q D+ W+ +
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQ-----NALVTLYSRCGKIEESYLAFEQTEAGDNIAWNAL 663
Query: 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQF 258
+ +++ G E + +F M +EG+ N + S + + A++ G+QVHA + + +
Sbjct: 664 VSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGY 723
Query: 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHE 318
D + V + LI+MY KCG + + F ++K+ V WN+II+ Y+++G G ++L F +
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783
Query: 319 MFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378
M S V P+ VTLVGVLSACS+ G V +G FESM S+Y + PK EHY C+VD+L RAG
Sbjct: 784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843
Query: 379 QVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438
+ A + I+ MP +PDA++W +LL AC H +++ E AA LL+LEP+++ Y+LLSN
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSN 903
Query: 439 IYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLE 498
+YA ++ R+ M+++ V K PG SWIEV+ +H F D +HP I +
Sbjct: 904 LYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGD-QNHPLADEIHEYFQ 962
Query: 499 KIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLR 558
+ E GY D +L+++ E+K + HSEKLA+++GL+ LP VPI VMKNLR
Sbjct: 963 DLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLR 1022
Query: 559 VCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
VC DCH+ IK +SKV REII+RDA RFHHF+ G CSC+DYW
Sbjct: 1023 VCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/386 (26%), Positives = 176/386 (45%), Gaps = 16/386 (4%)
Query: 33 PEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQTNMVLGYCQDGRVDEGR 88
P + W ++ G + +D+ R+L + + + + Y G +
Sbjct: 82 PNHQTLKW-LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140
Query: 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGR--- 145
++FDEMP++ + +W MI + N I LF M +N G + R
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200
Query: 146 -IQDAWELFKAMPM-----KSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMI 199
D E A + S V N +I +NG V AR VFD +R KD ++W MI
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260
Query: 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259
+ E E I LF M G+ + SVLS C + SL+ G Q+H +++ F
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320
Query: 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEM 319
D YV + L+++Y G L+ + IF N + +D V +N++I+G +Q G GEK++++F M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380
Query: 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379
G+ PD TL ++ ACS G + G+++ + +K + +++L +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQL-HAYTTKLGFASNNKIEGALLNLYAKCAD 439
Query: 380 VEDAMKLIEAMPFEPDAIIWGSLLGA 405
+E A+ E + ++W +L A
Sbjct: 440 IETALDYFLETEVE-NVVLWNVMLVA 464
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 100/449 (22%), Positives = 200/449 (44%), Gaps = 37/449 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDD----- 55
MPER + +W M++ +I E LF +M +NV G + R
Sbjct: 146 MPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDV 205
Query: 56 -----ARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYV 110
AR L+ + + VV + L Y ++G VD R +FD + K+ SW MISG
Sbjct: 206 VEQIHARILYQGLRDSTVVCNPLIDL-YSRNGFVDLARRVFDGLRLKDHSSWVAMISGLS 264
Query: 111 NNNRIDVARKLF------EVMPEKNEVSWTAMLMGYTQCGRIQ--DAWELFKAMPMKSVV 162
N A +LF +MP +++++L + C +I+ + E + +K
Sbjct: 265 KNECEAEAIRLFCDMYVLGIMP--TPYAFSSVL---SACKKIESLEIGEQLHGLVLKLGF 319
Query: 163 AS-----NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTL 217
+S N+++ G + A +F M ++D T++ +I + GY + ++LF
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379
Query: 218 MQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE 277
M +G+ + +L S++ C++ +L G+Q+HA + F + + L+ +Y KC +
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439
Query: 278 LVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337
+ F +++V+WN ++ Y S ++F +M ++P+ T +L
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499
Query: 338 CSYTGKVKEGREIFES-MKSKYLVEPKTEHYAC--MVDLLGRAGQVEDAMKLIEAMPFEP 394
C G ++ G +I +K+ + + Y C ++D+ + G+++ A ++
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAWDILIRFA-GK 554
Query: 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLL 423
D + W +++ + D A +++L
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 120/260 (46%), Gaps = 18/260 (6%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM 63
++VVSWT M+ GY + +A T F QM ++ + S V L + A + +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 64 PEKDVVA--------QTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRI 115
+ V+ Q +V Y + G+++E F++ + I+W ++SG+ +
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 116 DVARKLFEVMP----EKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS-----NS 166
+ A ++F M + N ++ + + ++ ++ ++ A+ K+ S N+
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITKTGYDSETEVCNA 732
Query: 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226
+I + G + A F ++ K++ +W+ +I Y + G+ E +D F M VR N
Sbjct: 733 LISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPN 792
Query: 227 FPSLISVLSVCASLASLDHG 246
+L+ VLS C+ + +D G
Sbjct: 793 HVTLVGVLSACSHIGLVDKG 812
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 14/240 (5%)
Query: 156 MPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM-IKVYERKGYELEVIDL 214
M ++SV +S I G+ + K R VF + A+++ + + + E + ++ + ID
Sbjct: 18 MFLRSVSSSFIFIHGVPRK---LKTRTVFPTLCGTRRASFAAISVYISEDESFQEKRIDS 74
Query: 215 FTLMQKEGVRVNFPSLISVLSVC-ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273
++ G+R N +L +L C + SLD GR++H+Q+++ D + ++ L Y+
Sbjct: 75 ---VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYL 131
Query: 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333
G+L +FD + I WN +I A L + +F M S V P++ T G
Sbjct: 132 FKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG 191
Query: 334 VLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYAC--MVDLLGRAGQVEDAMKLIEAM 390
VL AC G V ++ E + ++ L + + C ++DL R G V+ A ++ + +
Sbjct: 192 VLEACR-GGSV--AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGL 248
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/627 (35%), Positives = 346/627 (55%), Gaps = 31/627 (4%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQM------PEKNVVSWTVMLGG---FIRDSRID 54
R++V+W ++ + + EA +M P++ +S + +R +
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Query: 55 DARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114
A L + +++ + +V YC +V GR +FD M + + W MI+GY N
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384
Query: 115 IDVARKLFEVMPEK-----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV----VASN 165
A LF M E N + ++ + G + + + + N
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQN 444
Query: 166 SMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ------ 219
+++ + G++ A +F +M ++D TW+ MI Y + + + L MQ
Sbjct: 445 TLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKV 504
Query: 220 -----KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274
+ ++ N +L+++L CA+L++L G+++HA ++ DV V S L+ MY K
Sbjct: 505 SKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAK 564
Query: 275 CGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334
CG L + +FD K+++ WN II Y +G G++++ + M GV P++VT + V
Sbjct: 565 CGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISV 624
Query: 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394
+ACS++G V EG IF MK Y VEP ++HYAC+VDLLGRAG++++A +L+ MP +
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDF 684
Query: 395 D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELR 453
+ A W SLLGA R H L++ E+AA+ L+QLEP A Y+LL+NIY+S G + E+R
Sbjct: 685 NKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVR 744
Query: 454 KNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDS 513
+NM+++ V K PGCSWIE +VH F D SHP+ + LE + +R+ GY PD+
Sbjct: 745 RNMKEQGVRKEPGCSWIEHGDEVHKFVAGDS-SHPQSEKLSGYLETLWERMRKEGYVPDT 803
Query: 514 SFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKV 573
S VLH+V+E+EK L HSEKLA+A+G++ G IRV KNLRVC DCH A K ISK+
Sbjct: 804 SCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKI 863
Query: 574 MGREIILRDANRFHHFKDGLCSCRDYW 600
+ REIILRD RFH FK+G CSC DYW
Sbjct: 864 VDREIILRDVRRFHRFKNGTCSCGDYW 890
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 170/350 (48%), Gaps = 18/350 (5%)
Query: 68 VVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE 127
V +V Y + G ++FD + ++N +SW ++IS + + ++A + F M +
Sbjct: 133 VTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD 192
Query: 128 KN-EVSWTAMLMGYTQC-----------GRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175
+N E S ++ T C G+ A+ L K ++ N+++ G+ G
Sbjct: 193 ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII--NTLVAMYGKLG 250
Query: 176 EVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235
++ ++V+ +D TW+ ++ + LE ++ M EGV + ++ SVL
Sbjct: 251 KLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLP 310
Query: 236 VCASLASLDHGRQVHA-QLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIV 294
C+ L L G+++HA L D + +V S L+ MY C +++ G+ +FD + I
Sbjct: 311 ACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIG 370
Query: 295 MWNSIISGYAQYGLGEKSLKVFHEM-FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353
+WN++I+GY+Q +++L +F M S+G++ + T+ GV+ AC +G I
Sbjct: 371 LWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGF 430
Query: 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
+ + L + M D+ R G+++ AM++ M + D + W +++
Sbjct: 431 VVKRGLDRDRFVQNTLM-DMYSRLGKIDIAMRIFGKME-DRDLVTWNTMI 478
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 130/252 (51%), Gaps = 11/252 (4%)
Query: 160 SVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKV---YERKGYELEVIDLFT 216
SV +N+++ + G+ VFD++ E++ +W+ +I +E+ LE F
Sbjct: 132 SVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEA---FR 188
Query: 217 LMQKEGVRVNFPSLISVLSVCASLA---SLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273
M E V + +L+SV++ C++L L G+QVHA +R + +++ ++ + L+ MY
Sbjct: 189 CMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYG 247
Query: 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333
K G+L K++ +F +D+V WN+++S Q ++L+ EM GV PD+ T+
Sbjct: 248 KLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISS 307
Query: 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE 393
VL ACS+ ++ G+E+ ++ + + +VD+ QV ++ + M F+
Sbjct: 308 VLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FD 366
Query: 394 PDAIIWGSLLGA 405
+W +++
Sbjct: 367 RKIGLWNAMIAG 378
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 124/282 (43%), Gaps = 38/282 (13%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK-----------NVVSWTVMLGGFIR 49
M +R + W AM+ GY + EA LF M E VV V G F R
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 50 DSRIDD--ARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMIS 107
I +R D +D Q ++ Y + G++D IF +M +++++W TMI+
Sbjct: 424 KEAIHGFVVKRGLD----RDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479
Query: 108 GYV---------------NNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWEL 152
GYV N V++ V + N ++ +L + E+
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539
Query: 153 FKAMPMKSVVASN-----SMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGY 207
A +K+ +A++ +++ + G +Q +R VFDQ+ +K+ TW+ +I Y G
Sbjct: 540 -HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGN 598
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQV 249
E IDL +M +GV+ N + ISV + C+ +D G ++
Sbjct: 599 GQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 117/238 (49%), Gaps = 7/238 (2%)
Query: 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254
W +++ R E + + M G++ + + ++L A L ++ G+Q+HA +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 255 RCQFDVD-VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313
+ + VD V VA+ L+ +Y KCG+ +FD + ++ V WNS+IS + E +L
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY--ACMV 371
+ F M V P TLV V++ACS + EG + + + + L + + + +V
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNL-PMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243
Query: 372 DLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA-CRTHMKLDLAEVAAKKLLQ-LEP 427
+ G+ G++ + L+ + D + W ++L + C+ L+ E + +L+ +EP
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEP 300
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/612 (35%), Positives = 348/612 (56%), Gaps = 19/612 (3%)
Query: 7 VSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDA----RRLFDM 62
+S +++ +EG + +A + Q + ++ +++ S + DA R + D
Sbjct: 47 ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDN 106
Query: 63 MPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYV----NNNRIDVA 118
++D T ++ Y G VD R++FD+ K+ + W + + +
Sbjct: 107 GSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLY 166
Query: 119 RKLFEVMPEKNEVSWTAMLMG--YTQC--GRIQDAWELFKAMPMKS----VVASNSMILG 170
K+ + E + ++T +L ++C + E+ + + V +++
Sbjct: 167 WKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDM 226
Query: 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG--VRVNFP 228
+ G V A VF M ++ +WS MI Y + G E + F M +E N
Sbjct: 227 YARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288
+++SVL CASLA+L+ G+ +H ++R D + V S L+TMY +CG+L G+ +FD
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRM 346
Query: 289 ASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348
+D+V WNS+IS Y +G G+K++++F EM ++G P VT V VL ACS+ G V+EG+
Sbjct: 347 HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGK 406
Query: 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT 408
+FE+M + ++P+ EHYACMVDLLGRA ++++A K+++ M EP +WGSLLG+CR
Sbjct: 407 RLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRI 466
Query: 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCS 468
H ++LAE A+++L LEPKNAG Y+LL++IYA + +V ++K + R + K PG
Sbjct: 467 HGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRC 526
Query: 469 WIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHS 528
W+EV +K++ F D + P I L K+ ++E GY P + VL++++ EEK
Sbjct: 527 WMEVRRKMYSFVSVDEFN-PLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585
Query: 529 LRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHH 588
+ HSEKLA+A+GL+ +G PIR+ KNLR+C DCH K ISK M +EI++RD NRFH
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645
Query: 589 FKDGLCSCRDYW 600
FK+G+CSC DYW
Sbjct: 646 FKNGVCSCGDYW 657
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 24/276 (8%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRD----SRID 54
+R + W A+ R G E L+W+M E + ++T +L + + +
Sbjct: 140 KRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLM 199
Query: 55 DARRLFDMMPEK----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYV 110
+ + + + V T +V Y + G VD +F MP +NV+SW+ MI+ Y
Sbjct: 200 KGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYA 259
Query: 111 NNNR-IDVARKLFEVMPEK-----NEVSWTAML-----MGYTQCGRIQDAWELFKAMPMK 159
N + + R E+M E N V+ ++L + + G++ + L + +
Sbjct: 260 KNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSI 319
Query: 160 SVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219
V S +++ G+ G+++ + VFD+M ++D +W+ +I Y GY + I +F M
Sbjct: 320 LPVIS-ALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEML 378
Query: 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
G + +SVL C+ ++ G+++ + R
Sbjct: 379 ANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWR 414
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM------PEKNVVSWTVMLGGFIRDSRID 54
MP RNVVSW+AM+ Y + G EA F +M N V+ +L + ++
Sbjct: 243 MPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALE 302
Query: 55 DA---------RRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTM 105
R L ++P V++ + G C G+++ G+ +FD M ++V+SW ++
Sbjct: 303 QGKLIHGYILRRGLDSILP---VISALVTMYGRC--GKLEVGQRVFDRMHDRDVVSWNSL 357
Query: 106 ISGYVNNNRIDVARKLFEVM----PEKNEVSWTAMLMGYTQCGRIQDAWELFKAM 156
IS Y + A ++FE M V++ ++L + G +++ LF+ M
Sbjct: 358 ISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM 412
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 225/647 (34%), Positives = 340/647 (52%), Gaps = 53/647 (8%)
Query: 6 VVSWTAMVRGYVEEGMITEAGTLFWQM------PEKNVVSWTVMLGGFIRDSRIDDARRL 59
V++W +++R + ++ + ++A F +M P+ NV + + D R ++
Sbjct: 70 VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129
Query: 60 FDMMPEKDVVAQT-----NMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGY--VNN 112
F + D T NM G +FDEMP++ S + +
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMP 189
Query: 113 NRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAM---------------- 156
ID R++FEVMP K+ VS+ ++ GY Q G +DA + + M
Sbjct: 190 FGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVL 249
Query: 157 PMKS-----------------------VVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193
P+ S V +S++ ++ ++ + VF ++ +D
Sbjct: 250 PIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGI 309
Query: 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253
+W+ ++ Y + G E + LF M V+ + SV+ CA LA+L G+Q+H +
Sbjct: 310 SWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYV 369
Query: 254 VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313
+R F ++++AS L+ MY KCG + + IFD D V W +II G+A +G G +++
Sbjct: 370 LRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAV 429
Query: 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373
+F EM GV P+ V V VL+ACS+ G V E F SM Y + + EHYA + DL
Sbjct: 430 SLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADL 489
Query: 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433
LGRAG++E+A I M EP +W +LL +C H L+LAE A+K+ ++ +N G Y
Sbjct: 490 LGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAY 549
Query: 434 ILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMI 493
+L+ N+YAS GR+ ++A+LR MRK+ + K P CSWIE++ K H F D SHP I
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGD-RSHPSMDKI 608
Query: 494 MRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRV 553
L+ + + + GY D+S VLHDVDEE K L HSE+LAVA+G++ G IRV
Sbjct: 609 NEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRV 668
Query: 554 MKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
KN+R+C DCH AIK ISK+ REII+RD +RFHHF G CSC DYW
Sbjct: 669 TKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 130/260 (50%), Gaps = 16/260 (6%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNV----VSWTVMLGGFIRDSRIDDA 56
MP ++VVS+ ++ GY + GM +A + +M ++ + + +L F +
Sbjct: 202 MPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKG 261
Query: 57 RRLFDMMPEK----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ + + K DV +++V Y + R+++ +F + ++ ISW ++++GYV N
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321
Query: 113 NRIDVARKLFEVM----PEKNEVSWTAMLMGYTQCGRIQDAWEL----FKAMPMKSVVAS 164
R + A +LF M + V++++++ + +L + ++ +
Sbjct: 322 GRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIA 381
Query: 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224
++++ + G ++ AR +FD+M D+ +W+ +I + G+ E + LF M+++GV+
Sbjct: 382 SALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 441
Query: 225 VNFPSLISVLSVCASLASLD 244
N + ++VL+ C+ + +D
Sbjct: 442 PNQVAFVAVLTACSHVGLVD 461
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 110/258 (42%), Gaps = 38/258 (14%)
Query: 184 FDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASL 243
F ++ W +I+ + + + + F M+ G + SVL C + L
Sbjct: 62 FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121
Query: 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYIKC------------------------GELV 279
G VH +VR D D+Y + L+ MY K E V
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181
Query: 280 KG------------KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327
K + +F+ KD+V +N+II+GYAQ G+ E +L++ EM ++ + PD
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241
Query: 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387
TL VL S V +G+EI + K ++ + +VD+ ++ ++ED+ ++
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG-IDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 388 EAMPFEPDAIIWGSLLGA 405
+ + D I W SL+
Sbjct: 301 SRL-YCRDGISWNSLVAG 317
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI 299
+ S +Q+HAQ +R Q + AS++I++Y L + L+F S ++ W S+
Sbjct: 18 IKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSV 76
Query: 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350
I + L K+L F EM +SG PD VL +C+ ++ G +
Sbjct: 77 IRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 393 bits (1010), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/481 (41%), Positives = 301/481 (62%), Gaps = 8/481 (1%)
Query: 127 EKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQ 186
+K+ T++L Y+ CG ++ A +F K + A NS++ + G + AR +FD+
Sbjct: 94 DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDE 153
Query: 187 MREKDDATWSGMIKVYERKGYELEVIDLFTLMQ-----KEGVRVNFPSLISVLSVCASLA 241
M E++ +WS +I Y G E +DLF MQ + VR N ++ +VLS C L
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-DIVMWNSII 300
+L+ G+ VHA + + ++D+ + + LI MY KCG L + K +F+ SK D+ ++++I
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 301 SGYAQYGLGEKSLKVFHEMFSS-GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359
A YGL ++ ++F EM +S + P+ VT VG+L AC + G + EG+ F+ M ++
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419
+ P +HY CMVDL GR+G +++A I +MP EPD +IWGSLL R + E A
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 420 KKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479
K+L++L+P N+G Y+LLSN+YA GR+ +V +R M + + K PGCS++EVE VH F
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEF 453
Query: 480 TGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVA 539
D S E I ML++I LREAGY D+ VL D++E++K +L YHSEKLA+A
Sbjct: 454 VVGD-ESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIA 512
Query: 540 YGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDY 599
+ L+K G P+R++KNLR+CGDCH +K+ISK+ REI++RD NRFHHF+DG CSCRD+
Sbjct: 513 FCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRDF 572
Query: 600 W 600
W
Sbjct: 573 W 573
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 142/306 (46%), Gaps = 20/306 (6%)
Query: 20 GMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYC 79
G T A L + + +K+ T +L + + A+R+FD KD+ A ++V Y
Sbjct: 81 GQRTHAQILLFGL-DKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYA 139
Query: 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVM--PEKNEV----SW 133
+ G +D+ R++FDEMP++NVISW+ +I+GYV + A LF M P+ NE +
Sbjct: 140 KAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNE 199
Query: 134 TAMLMGYTQCGRI----QDAW---ELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQ 186
M + CGR+ Q W + K +V ++I + G +++A+ VF+
Sbjct: 200 FTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNA 259
Query: 187 MREKDDA-TWSGMIKVYERKGYELEVIDLFTLM-QKEGVRVNFPSLISVLSVCASLASLD 244
+ K D +S MI G E LF+ M + + N + + +L C ++
Sbjct: 260 LGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLIN 319
Query: 245 HGRQVHAQLVRCQFDVDVYVA--SVLITMYIKCGELVKGKLIFDNFA-SKDIVMWNSIIS 301
G+ ++ +F + + ++ +Y + G + + + + D+++W S++S
Sbjct: 320 EGKSYFKMMIE-EFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLS 378
Query: 302 GYAQYG 307
G G
Sbjct: 379 GSRMLG 384
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 104/228 (45%), Gaps = 37/228 (16%)
Query: 212 IDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271
I ++ M+ V +F + +L + L G++ HAQ++ D D +V + L+ M
Sbjct: 47 ISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 106
Query: 272 YIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM------ 325
Y CG+L + +FD+ SKD+ WNS+++ YA+ GL + + K+F EM V+
Sbjct: 107 YSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLI 166
Query: 326 ------------------------------PDDVTLVGVLSACSYTGKVKEGREIFESMK 355
P++ T+ VLSAC G +++G+ + +
Sbjct: 167 NGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWV-HAYI 225
Query: 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
KY VE ++D+ + G +E A ++ A+ + D + +++
Sbjct: 226 DKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 119/253 (47%), Gaps = 24/253 (9%)
Query: 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM 63
+++ +W ++V Y + G+I +A LF +MPE+NV+SW+ ++ G++ + +A LF M
Sbjct: 126 KDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM 185
Query: 64 ----PEKDVVAQT----NMVLGYC-QDGRVDEGREIFDEMPKKNV----ISWTTMISGYV 110
P + V + VL C + G +++G+ + + K +V + T +I Y
Sbjct: 186 QLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYA 245
Query: 111 NNNRIDVARKLFEVMPEKNEV-SWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM-- 167
++ A+++F + K +V +++AM+ G + ++LF M + NS+
Sbjct: 246 KCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTF 305
Query: 168 --ILGLG-QNGEVQKARVVFDQMREKDDAT-----WSGMIKVYERKGYELEVIDLFTLMQ 219
ILG G + + + F M E+ T + M+ +Y R G E M
Sbjct: 306 VGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMP 365
Query: 220 KEGVRVNFPSLIS 232
E + + SL+S
Sbjct: 366 MEPDVLIWGSLLS 378
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 59/282 (20%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLF--WQMPEKN---------------------- 36
MPERNV+SW+ ++ GYV G EA LF Q+P+ N
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213
Query: 37 --------------------VVSWTVMLGGFIRDSRIDDARRLFDMM-PEKDVVAQTNMV 75
+V T ++ + + ++ A+R+F+ + +KDV A + M+
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273
Query: 76 LGYCQDGRVDEGREIFDEMPKK-----NVISWTTMISGYVNNNRIDVARKLFEVMPEKNE 130
G DE ++F EM N +++ ++ V+ I+ + F++M E+
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333
Query: 131 VS-----WTAMLMGYTQCGRIQDAWELFKAMPMK-SVVASNSMILGLGQNGEVQKARVVF 184
++ + M+ Y + G I++A +MPM+ V+ S++ G G+++
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393
Query: 185 DQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223
++ E D + + VY + G +EV + M+ +G+
Sbjct: 394 KRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGI 435
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/618 (35%), Positives = 353/618 (57%), Gaps = 21/618 (3%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQM------PEKNVVSWTVMLGGFIRDSRID 54
M ER+++SW +++ G + G+ EA LF Q+ P++ ++ +V+ +
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMT-SVLKAASSLPEGLS 434
Query: 55 DARRL----FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYV 110
++++ + D T ++ Y ++ + E EI E ++++W M++GY
Sbjct: 435 LSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEA-EILFERHNFDLVAWNAMMAGYT 493
Query: 111 NNNRIDVARKLFEVMPEKNEVSWTAMLMG-YTQCGRI--QDAWELFKAMPMKS-----VV 162
++ KLF +M ++ E S L + CG + + + A +KS +
Sbjct: 494 QSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLW 553
Query: 163 ASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEG 222
S+ ++ + G++ A+ FD + DD W+ MI G E +F+ M+ G
Sbjct: 554 VSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613
Query: 223 VRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282
V + ++ ++ + L +L+ GRQ+HA ++ D +V + L+ MY KCG +
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673
Query: 283 LIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG 342
+F +I WN+++ G AQ+G G+++L++F +M S G+ PD VT +GVLSACS++G
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733
Query: 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402
V E + SM Y ++P+ EHY+C+ D LGRAG V+ A LIE+M E A ++ +L
Sbjct: 734 LVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793
Query: 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462
L ACR + + A KLL+LEP ++ Y+LLSN+YA+ ++ ++ R M+ V
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVK 853
Query: 463 KPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDE 522
K PG SWIEV+ K+H+F D S+ + +I R ++ + +++ GY P++ F L DV+E
Sbjct: 854 KDPGFSWIEVKNKIHIFVVDD-RSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEE 912
Query: 523 EEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRD 582
EEK +L YHSEKLAVA+GL+ P PIRV+KNLRVCGDCH+A+K I+KV REI+LRD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972
Query: 583 ANRFHHFKDGLCSCRDYW 600
ANRFH FKDG+CSC DYW
Sbjct: 973 ANRFHRFKDGICSCGDYW 990
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 108/434 (24%), Positives = 200/434 (46%), Gaps = 35/434 (8%)
Query: 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDS-----RIDDA 56
PER +++ ++ Y + G +T A +F +MP++++VSW +L + + S I A
Sbjct: 72 PERFLIN--NLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQA 129
Query: 57 RRLFDMMPEKDVVAQTNMVLG----YCQDGRVDEGREIFDEMPKKNVISWTTMISG---- 108
LF ++ +DVV + M L C E F K + ++G
Sbjct: 130 FLLFRIL-RQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVN 188
Query: 109 -YVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM 167
Y+ ++ + LFE MP ++ V W ML Y + G ++A +L A S + N +
Sbjct: 189 IYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH-SSGLNPNEI 247
Query: 168 ILGLGQ--NGEVQKARVVFDQMREKDDATWSGMI------KVYERKGYELEVIDLFTLMQ 219
L L +G+ A V D ++ S +I Y G ++ F M
Sbjct: 248 TLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMV 307
Query: 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279
+ V + + I +L+ + SL G+QVH ++ D+ + V++ LI MY K +
Sbjct: 308 ESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFG 367
Query: 280 KGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339
+ +FDN + +D++ WNS+I+G AQ GL +++ +F ++ G+ PD T+ VL A S
Sbjct: 368 FARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427
Query: 340 YTGKVKEGREIFESMKSKYL-VEPKTEHY--ACMVDLLGRAGQVEDAMKLIEAMPFEPDA 396
+ EG + + + + + ++ + ++D R +++A L E F D
Sbjct: 428 ---SLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF--DL 482
Query: 397 IIWGSLL-GACRTH 409
+ W +++ G ++H
Sbjct: 483 VAWNAMMAGYTQSH 496
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 83/165 (50%), Gaps = 7/165 (4%)
Query: 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQ 305
G+ HA+++ + + + ++ + LI+MY KCG L + +FD +D+V WNSI++ YAQ
Sbjct: 58 GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117
Query: 306 YGLG-----EKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360
+++ +F + V +TL +L C ++G V E F K +
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACKIGL 176
Query: 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405
+ +V++ + G+V++ L E MP+ D ++W +L A
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/573 (37%), Positives = 334/573 (58%), Gaps = 57/573 (9%)
Query: 84 VDEGREIFDEMPKKNVISWTTMISGYV--NNNRIDVARKLF-EVMP----EKNEVSWTAM 136
+D +IF++MP++N SW T+I G+ + ++ +A LF E+M E N ++ ++
Sbjct: 75 LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134
Query: 137 LMG-----------------------------------YTQCGRIQDAWELF------KA 155
L Y CG ++DA LF K
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194
Query: 156 MPMKS--------VVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGY 207
M + + +V N MI G + G+ + AR++FD+MR++ +W+ MI Y G+
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254
Query: 208 ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV 267
+ +++F M+K +R N+ +L+SVL + L SL+ G +H +D + S
Sbjct: 255 FKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSA 314
Query: 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327
LI MY KCG + K +F+ ++++ W+++I+G+A +G ++ F +M +GV P
Sbjct: 315 LIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPS 374
Query: 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387
DV + +L+ACS+ G V+EGR F M S +EP+ EHY CMVDLLGR+G +++A + I
Sbjct: 375 DVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI 434
Query: 388 EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447
MP +PD +IW +LLGACR +++ + A L+ + P ++G Y+ LSN+YASQG +
Sbjct: 435 LNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWS 494
Query: 448 DVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREA 507
+V+E+R M+++++ K PGCS I+++ +H F D SHP+ I ML +I LR A
Sbjct: 495 EVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVED-DSHPKAKEINSMLVEISDKLRLA 553
Query: 508 GYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAI 567
GY P ++ VL +++EE+K + L YHSEK+A A+GL+ G PIR++KNLR+C DCHS+I
Sbjct: 554 GYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613
Query: 568 KLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
KLISKV R+I +RD RFHHF+DG CSC DYW
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/426 (22%), Positives = 180/426 (42%), Gaps = 73/426 (17%)
Query: 1 MPERNVVSWTAMVRGYVE--EGMITEAGTLFWQM-----PEKNVVSWTVMLGGFIRDSRI 53
MP+RN SW ++RG+ E E A TLF++M E N ++ +L + +I
Sbjct: 85 MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144
Query: 54 DDARRLFDMMPE----KDVVAQTNMVLGYCQDGRVDEGREIF------------DEMPKK 97
+ +++ + + D +N+V Y G + + R +F + K+
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204
Query: 98 N--VISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKA 155
+ ++ W MI GY+ AR LF+ M +++ VSW M+ GY+ G +DA E+F+
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264
Query: 156 MPMKSV---------------------------------------VASNSMILGLGQNGE 176
M + V +++I + G
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324
Query: 177 VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236
++KA VF+++ ++ TWS MI + G + ID F M++ GVR + + I++L+
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384
Query: 237 CASLASLDHGRQVHAQLVRCQ-FDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-DIV 294
C+ ++ GR+ +Q+V + + ++ + + G L + + N K D V
Sbjct: 385 CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDV 444
Query: 295 MWNSIISGYAQYG---LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF 351
+W +++ G +G++ + +M V D V + + + G E E+
Sbjct: 445 IWKALLGACRMQGNVEMGKRVANILMDM----VPHDSGAYVALSNMYASQGNWSEVSEMR 500
Query: 352 ESMKSK 357
MK K
Sbjct: 501 LRMKEK 506
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 391 bits (1005), Expect = e-108, Method: Compositional matrix adjust.
Identities = 229/674 (33%), Positives = 357/674 (52%), Gaps = 86/674 (12%)
Query: 12 MVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQ 71
V Y + G ++ A F+ E NV S+ V++ + +DS+I AR+LFD +P+ D V+
Sbjct: 49 FVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSY 108
Query: 72 TNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN--NRIDVARKL-------- 121
++ GY +F M K +SG + +R+D+ ++L
Sbjct: 109 NTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGG 168
Query: 122 ---------------------------FEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELF 153
F M E ++EVSW +M++ Y Q A L+
Sbjct: 169 FDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALY 228
Query: 154 KAMPMK--------------SVVASNSMI-----------LGLGQNGEVQKARV------ 182
K M K ++ + + +I G QN V +
Sbjct: 229 KEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKC 288
Query: 183 -----------VFDQMREKDDATWSGMIKVYE-RKGYELEVIDLFTLMQKEGVRVNFPSL 230
VF ++ D W+ MI Y + E + F MQ+ G R + S
Sbjct: 289 GGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSF 348
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVD-VYVASVLITMYIKCGELVKGKLIFDNFA 289
+ V S C++L+S +Q+H ++ + + V + LI++Y K G L + +FD
Sbjct: 349 VCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408
Query: 290 SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGRE 349
+ V +N +I GYAQ+G G ++L ++ M SG+ P+ +T V VLSAC++ GKV EG+E
Sbjct: 409 ELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE 468
Query: 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
F +MK + +EP+ EHY+CM+DLLGRAG++E+A + I+AMP++P ++ W +LLGACR H
Sbjct: 469 YFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKH 528
Query: 410 MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469
+ LAE AA +L+ ++P A PY++L+N+YA ++ ++A +RK+MR + + K PGCSW
Sbjct: 529 KNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSW 588
Query: 470 IEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVL---HDVDEEEKV 526
IEV+KK H+F D SHP + LE++ +++ GY D + + + E ++
Sbjct: 589 IEVKKKKHVFVAEDW-SHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEE 647
Query: 527 HSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRF 586
L +HSEKLAVA+GL+ +G + V+KNLR+CGDCH+AIK +S V GREII+RD RF
Sbjct: 648 MRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRF 707
Query: 587 HHFKDGLCSCRDYW 600
H FKDG CSC DYW
Sbjct: 708 HCFKDGKCSCGDYW 721
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 5 NVVSWTAMVRGY-VEEGMITEAGTLFWQMPE----KNVVSWTVMLGGFIRDSRIDDARRL 59
++V W M+ GY + E + EA F QM + S+ + S +++
Sbjct: 308 DLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQI 367
Query: 60 FDM-----MPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114
+ +P + ++ Y + G + + R +FD MP+ N +S+ MI GY +
Sbjct: 368 HGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGH 427
Query: 115 IDVARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNS---- 166
A L++ M + N++++ A+L CG++ + E F M + +
Sbjct: 428 GTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYS 487
Query: 167 -MILGLGQNGEVQKARVVFDQMREKDDA-TWSGMI 199
MI LG+ G++++A D M K + W+ ++
Sbjct: 488 CMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK----NVVSWTVMLGGFIRDSRIDDA 56
MPE N VS+ M++GY + G TEA L+ +M + N +++ +L ++D+
Sbjct: 407 MPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEG 466
Query: 57 RRLFDMM-------PEKDVVAQTNMVLGYCQDGRVDEGREIFDEMP-KKNVISWTTMISG 108
+ F+ M PE + + +LG + G+++E D MP K ++W ++
Sbjct: 467 QEYFNTMKETFKIEPEAEHYSCMIDLLG--RAGKLEEAERFIDAMPYKPGSVAWAALLGA 524
Query: 109 YVNNNRIDVARK 120
+ + +A +
Sbjct: 525 CRKHKNMALAER 536
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 52/204 (25%)
Query: 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL---------------------- 283
G+ +HA V+ Y+++ + +Y KCG L +
Sbjct: 27 GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86
Query: 284 ---------IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334
+FD D V +N++ISGYA ++ +F M G D TL G+
Sbjct: 87 DSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGL 146
Query: 335 LSACS---------YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMK 385
++AC + V G + + S+ + + V + G + +A+
Sbjct: 147 IAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAF------------VTYYSKGGLLREAVS 194
Query: 386 LIEAMPFEPDAIIWGSLLGACRTH 409
+ M D + W S++ A H
Sbjct: 195 VFYGMDELRDEVSWNSMIVAYGQH 218
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/647 (34%), Positives = 353/647 (54%), Gaps = 51/647 (7%)
Query: 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFD- 61
+ N A++ Y G + A T+F + K++V W ++ ++ + +D+ +L
Sbjct: 178 DSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSC 237
Query: 62 -----MMPEK---DVVAQTNMVLG------------------------------YCQDGR 83
MP D + ++ LG Y Q G
Sbjct: 238 MRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGD 297
Query: 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEK----NEVSWTAMLMG 139
+ + ++F+EMPK +V+ W+ MI+ + N + A LF M E NE + +++L G
Sbjct: 298 MSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNG 357
Query: 140 YTQCGRIQDAWELFKAMPMK-----SVVASNSMILGLGQNGEVQKARVVFDQMREKDDAT 194
G+ E + +K + SN++I + ++ A +F ++ K++ +
Sbjct: 358 -CAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVS 416
Query: 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254
W+ +I YE G + +F + V V + S L CASLAS+D G QVH +
Sbjct: 417 WNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAI 476
Query: 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLK 314
+ V V++ LI MY KCG++ + +F+ + D+ WN++ISGY+ +GLG ++L+
Sbjct: 477 KTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALR 536
Query: 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374
+ M P+ +T +GVLS CS G + +G+E FESM + +EP EHY CMV LL
Sbjct: 537 ILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLL 596
Query: 375 GRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434
GR+GQ++ AMKLIE +P+EP +IW ++L A + A +A+++L++ PK+ Y+
Sbjct: 597 GRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYV 656
Query: 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIM 494
L+SN+YA ++ +VA +RK+M++ V K PG SWIE + VH F+ HP+ +I
Sbjct: 657 LVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFS-VGLSDHPDMKLIN 715
Query: 495 RMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLPEGVP-IRV 553
MLE + AGY PD + VL D+D+EEK L HSE+LA+AYGLV++P I +
Sbjct: 716 GMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILI 775
Query: 554 MKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600
MKNLR+C DCHSA+K+IS ++ R++++RD NRFHHF G+CSC D+W
Sbjct: 776 MKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 109/421 (25%), Positives = 186/421 (44%), Gaps = 14/421 (3%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MPERN VS+ + +GY + I L + E N +T L F+ + + L
Sbjct: 110 MPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLH 169
Query: 61 D----MMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116
+ + + ++ Y G VD R +F+ + K+++ W ++S YV N +
Sbjct: 170 SPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFE 229
Query: 117 VARKLFEVMPEK----NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGL- 171
+ KL M N ++ L G A + + V + +GL
Sbjct: 230 DSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLL 289
Query: 172 ---GQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP 228
Q G++ A VF++M + D WS MI + + G+ E +DLF M++ V N
Sbjct: 290 QLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEF 349
Query: 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288
+L S+L+ CA G Q+H +V+ FD+D+YV++ LI +Y KC ++ +F
Sbjct: 350 TLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAEL 409
Query: 289 ASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348
+SK+ V WN++I GY G G K+ +F E + V +VT L AC+ + G
Sbjct: 410 SSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV 469
Query: 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT 408
++ + K K ++D+ + G ++ A + M D W +L+ T
Sbjct: 470 QV-HGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYST 527
Query: 409 H 409
H
Sbjct: 528 H 528
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 155/341 (45%), Gaps = 6/341 (1%)
Query: 67 DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMP 126
D+ A ++ Y + G + +FDEMP++N +S+ T+ GY + I + +L
Sbjct: 83 DLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGH 142
Query: 127 EKNEVSWTAMLMGYTQCGRIQDA-W---ELFKAMPMKSVVASNSMILGLGQNGEVQKARV 182
E N +T+ L + + + W + K + ++I G V AR
Sbjct: 143 ELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSART 202
Query: 183 VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242
VF+ + KD W+G++ Y GY + + L + M+ G N + + L L +
Sbjct: 203 VFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGA 262
Query: 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISG 302
D + VH Q+++ + +D V L+ +Y + G++ +F+ D+V W+ +I+
Sbjct: 263 FDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322
Query: 303 YAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP 362
+ Q G +++ +F M + V+P++ TL +L+ C+ GK E + K +
Sbjct: 323 FCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDL 381
Query: 363 KTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLL 403
++D+ + +++ A+KL + + + W +++
Sbjct: 382 DIYVSNALIDVYAKCEKMDTAVKLFAELS-SKNEVSWNTVI 421
Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 122/274 (44%), Gaps = 22/274 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLF 60
MP+ +VV W+ M+ + + G EA LF +M E VV L + I L
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367
Query: 61 DMMP--------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNN 112
+ + + D+ ++ Y + ++D ++F E+ KN +SW T+I GY N
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYEN- 426
Query: 113 NRIDVARKLFEVMPE--KNEVSWTAMLMGYT--QCGR-------IQDAWELFKAMPMKSV 161
+ K F + E +N+VS T + C +Q K K V
Sbjct: 427 --LGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKV 484
Query: 162 VASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE 221
SNS+I + G+++ A+ VF++M D A+W+ +I Y G + + + +M+
Sbjct: 485 AVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDR 544
Query: 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255
+ N + + VLS C++ +D G++ ++R
Sbjct: 545 DCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIR 578
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 104/255 (40%), Gaps = 46/255 (18%)
Query: 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA- 304
+ +H +++ +D++ ++L+ Y+K G +FD ++ V + ++ GYA
Sbjct: 68 AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC 127
Query: 305 QYGLGEKS-----------------LKVFHEMFSSGVMP-----------DDVTLVG--V 334
Q +G S LK+F + + + P D VG +
Sbjct: 128 QDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAAL 187
Query: 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---P 391
++A S G V R +FE + K +V +A +V G ED++KL+ M
Sbjct: 188 INAYSVCGSVDSARTVFEGILCKDIVV-----WAGIVSCYVENGYFEDSLKLLSCMRMAG 242
Query: 392 FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ----LEPKNAGPYILLSNIYASQGRFH 447
F P+ + + L A D A+ ++L+ L+P+ + L +Y G
Sbjct: 243 FMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG---VGLLQLYTQLGDMS 299
Query: 448 DVAELRKNMRKRNVI 462
D ++ M K +V+
Sbjct: 300 DAFKVFNEMPKNDVV 314
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/617 (35%), Positives = 344/617 (55%), Gaps = 55/617 (8%)
Query: 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRL- 59
PE + + +VRGY E + +F +M K V F+ + +++ R L
Sbjct: 65 FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKA-VENFRSLR 123
Query: 60 --FDMMP-------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYV 110
F M E + T ++ Y G V+ R++FDEM + N+++W +I+
Sbjct: 124 TGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACF 183
Query: 111 NNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILG 170
N + AR++F+ M +N SW ML GY + G ++ A +F MP + V+ ++MI+G
Sbjct: 184 RGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVG 243
Query: 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSL 230
+ NG ++ + F + +Q+ G+ N SL
Sbjct: 244 IAHNGSFNESFLYFRE-------------------------------LQRAGMSPNEVSL 272
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290
VLS C+ S + G+ +H + + + V V + LI MY +CG + +L+F+
Sbjct: 273 TGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 332
Query: 291 KD-IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGRE 349
K IV W S+I+G A +G GE+++++F+EM + GV PD ++ + +L ACS+ G ++EG +
Sbjct: 333 KRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGED 392
Query: 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH 409
F MK Y +EP+ EHY CMVDL GR+G+++ A I MP P AI+W +LLGAC +H
Sbjct: 393 YFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSH 452
Query: 410 MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469
++LAE ++L +L+P N+G +LLSN YA+ G++ DVA +RK+M + + K S
Sbjct: 453 GNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSL 512
Query: 470 IEVEKKVHMFT------GRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEE 523
+EV K ++ FT G D +H ++ E I L EAGY P+ + L+DV+EE
Sbjct: 513 VEVGKTMYKFTAGEKKKGIDIEAHE------KLKEIILRLKDEAGYTPEVASALYDVEEE 566
Query: 524 EKVHSLRYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDA 583
EK + HSEKLA+A+ L +L +G IR++KNLR+C DCH+ +KL SKV G EI++RD
Sbjct: 567 EKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDR 626
Query: 584 NRFHHFKDGLCSCRDYW 600
NRFH FKDG CSCRDYW
Sbjct: 627 NRFHSFKDGSCSCRDYW 643
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 14/182 (7%)
Query: 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN--- 287
+S+L+ C +L +L Q+H ++ D D Y LI + C + L +
Sbjct: 9 LSLLNSCKNLRALT---QIHGLFIKYGVDTDSYFTGKLI---LHCAISISDALPYARRLL 62
Query: 288 --FASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKV 344
F D M+N+++ GY++ S+ VF EM G V PD + V+ A +
Sbjct: 63 LCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSL 122
Query: 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404
+ G ++ K+ +E ++ + G G VE A K+ + M +P+ + W +++
Sbjct: 123 RTGFQM-HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEM-HQPNLVAWNAVIT 180
Query: 405 AC 406
AC
Sbjct: 181 AC 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 226,731,819
Number of Sequences: 539616
Number of extensions: 9566079
Number of successful extensions: 32616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 23133
Number of HSP's gapped (non-prelim): 2454
length of query: 600
length of database: 191,569,459
effective HSP length: 123
effective length of query: 477
effective length of database: 125,196,691
effective search space: 59718821607
effective search space used: 59718821607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)