Query 007517
Match_columns 600
No_of_seqs 761 out of 4514
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 11:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 9E-123 2E-127 1006.5 64.3 596 4-600 85-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-120 4E-125 1011.1 64.1 594 1-598 248-857 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 4.1E-73 8.9E-78 631.8 44.4 573 1-595 147-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.6E-63 5.7E-68 542.9 51.8 460 4-466 404-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1E-61 2.2E-66 530.3 48.0 495 3-514 367-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.2E-58 1.3E-62 498.3 37.7 477 97-595 85-583 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-29 1.3E-33 282.7 46.5 449 5-460 396-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-28 3.9E-33 278.7 47.4 449 4-459 361-832 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3.1E-32 6.6E-37 219.1 8.4 106 466-590 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 5.8E-20 1.3E-24 210.5 47.2 445 5-458 61-665 (1157)
11 PRK11447 cellulose synthase su 99.9 1E-19 2.2E-24 208.6 46.5 375 77-461 278-743 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 6.4E-21 1.4E-25 185.9 30.8 432 11-450 53-510 (966)
13 TIGR00990 3a0801s09 mitochondr 99.9 1E-18 2.2E-23 188.1 38.8 411 42-459 132-571 (615)
14 KOG4626 O-linked N-acetylgluco 99.9 1E-19 2.2E-24 177.6 25.9 412 40-459 51-485 (966)
15 PRK09782 bacteriophage N4 rece 99.9 1.2E-17 2.5E-22 183.4 43.6 210 244-460 493-707 (987)
16 PRK11788 tetratricopeptide rep 99.9 4E-19 8.7E-24 181.6 29.8 290 170-466 44-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 2.7E-18 5.9E-23 175.5 30.8 284 107-424 43-346 (389)
18 TIGR00990 3a0801s09 mitochondr 99.8 6.9E-17 1.5E-21 174.1 39.5 411 9-429 130-575 (615)
19 PRK09782 bacteriophage N4 rece 99.8 2.3E-16 5.1E-21 173.2 43.6 447 4-460 179-741 (987)
20 PRK15174 Vi polysaccharide exp 99.8 4.5E-17 9.8E-22 174.9 37.2 322 102-429 45-385 (656)
21 PRK10049 pgaA outer membrane p 99.8 5.5E-17 1.2E-21 178.0 38.0 384 43-430 21-461 (765)
22 PRK10049 pgaA outer membrane p 99.8 4.5E-17 9.8E-22 178.7 35.3 382 72-459 19-456 (765)
23 PRK15174 Vi polysaccharide exp 99.8 2.3E-16 4.9E-21 169.5 36.3 324 129-459 41-381 (656)
24 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.9E-20 164.0 41.8 414 15-430 43-518 (822)
25 PRK14574 hmsH outer membrane p 99.8 1.8E-15 3.9E-20 163.0 42.0 408 46-459 43-513 (822)
26 KOG2002 TPR-containing nuclear 99.7 6E-14 1.3E-18 144.9 36.6 437 17-461 175-677 (1018)
27 KOG2002 TPR-containing nuclear 99.7 2.8E-14 6E-19 147.4 30.1 414 35-459 268-745 (1018)
28 KOG2003 TPR repeat-containing 99.7 1.6E-14 3.4E-19 136.7 23.9 433 9-446 204-710 (840)
29 PF13429 TPR_15: Tetratricopep 99.6 4.5E-15 9.9E-20 143.8 10.7 256 198-457 14-275 (280)
30 KOG0495 HAT repeat protein [RN 99.6 4E-11 8.6E-16 119.0 36.6 447 17-474 387-893 (913)
31 KOG2003 TPR repeat-containing 99.6 9.8E-13 2.1E-17 124.7 24.5 449 40-500 204-722 (840)
32 KOG1915 Cell cycle control pro 99.6 4.1E-11 9E-16 114.6 34.3 444 8-458 75-584 (677)
33 KOG4422 Uncharacterized conser 99.6 4.4E-11 9.6E-16 113.1 34.0 233 90-326 198-466 (625)
34 KOG1155 Anaphase-promoting com 99.6 4.6E-11 1E-15 114.2 33.9 192 262-456 330-533 (559)
35 KOG2076 RNA polymerase III tra 99.5 9.6E-12 2.1E-16 128.1 29.7 323 144-469 153-522 (895)
36 PRK10747 putative protoheme IX 99.5 1.6E-11 3.5E-16 124.6 28.8 274 174-457 97-388 (398)
37 KOG4422 Uncharacterized conser 99.5 7.4E-10 1.6E-14 104.9 35.9 409 36-461 115-592 (625)
38 KOG0547 Translocase of outer m 99.5 3.4E-11 7.3E-16 115.8 27.1 213 240-458 339-565 (606)
39 PRK10747 putative protoheme IX 99.5 1.3E-10 2.8E-15 118.0 31.5 281 112-426 97-391 (398)
40 KOG1915 Cell cycle control pro 99.5 5.2E-10 1.1E-14 107.2 33.0 452 3-457 104-623 (677)
41 KOG4318 Bicoid mRNA stability 99.5 9.4E-11 2E-15 120.3 29.6 444 3-469 22-603 (1088)
42 TIGR00540 hemY_coli hemY prote 99.5 1.4E-10 3.1E-15 118.3 31.5 142 279-424 246-398 (409)
43 KOG1126 DNA-binding cell divis 99.5 1.1E-11 2.4E-16 123.9 21.5 275 176-459 334-620 (638)
44 KOG1126 DNA-binding cell divis 99.4 1.6E-11 3.5E-16 122.7 22.4 246 206-459 333-586 (638)
45 KOG2076 RNA polymerase III tra 99.4 7.2E-10 1.6E-14 114.6 34.5 428 17-445 150-720 (895)
46 TIGR00540 hemY_coli hemY prote 99.4 2.6E-10 5.6E-15 116.5 29.8 279 173-458 96-398 (409)
47 PF13429 TPR_15: Tetratricopep 99.4 1.4E-12 3E-17 126.4 10.7 250 167-424 14-276 (280)
48 KOG0495 HAT repeat protein [RN 99.4 1.1E-08 2.5E-13 102.0 36.4 360 69-438 517-893 (913)
49 KOG1155 Anaphase-promoting com 99.4 3.1E-09 6.7E-14 102.0 31.0 156 228-388 331-490 (559)
50 KOG1173 Anaphase-promoting com 99.4 3.4E-09 7.4E-14 104.2 31.7 262 191-457 243-516 (611)
51 TIGR02521 type_IV_pilW type IV 99.4 1.6E-10 3.4E-15 108.7 22.3 198 260-458 29-231 (234)
52 COG2956 Predicted N-acetylgluc 99.3 1.4E-09 3.1E-14 99.6 25.6 278 112-424 48-346 (389)
53 KOG0547 Translocase of outer m 99.3 4.2E-09 9.1E-14 101.7 29.4 394 9-426 118-567 (606)
54 KOG4318 Bicoid mRNA stability 99.3 7.3E-11 1.6E-15 121.1 18.0 263 213-516 11-274 (1088)
55 PF13041 PPR_2: PPR repeat fam 99.3 7.3E-12 1.6E-16 85.4 6.9 50 291-340 1-50 (50)
56 COG3071 HemY Uncharacterized e 99.2 2.4E-08 5.2E-13 94.5 29.1 286 105-424 88-389 (400)
57 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 89.7 33.5 294 130-429 194-504 (564)
58 KOG2376 Signal recognition par 99.2 6.5E-08 1.4E-12 95.9 32.8 432 12-455 18-516 (652)
59 PF13041 PPR_2: PPR repeat fam 99.2 2.3E-11 5E-16 82.9 5.9 50 190-239 1-50 (50)
60 COG3071 HemY Uncharacterized e 99.2 1.7E-08 3.6E-13 95.6 26.7 275 174-458 97-389 (400)
61 PRK12370 invasion protein regu 99.2 5.1E-09 1.1E-13 111.1 25.5 260 191-460 255-536 (553)
62 KOG2047 mRNA splicing factor [ 99.2 1.7E-07 3.7E-12 93.7 33.6 195 264-460 479-688 (835)
63 COG2956 Predicted N-acetylgluc 99.2 1.2E-08 2.7E-13 93.6 22.8 285 144-467 49-355 (389)
64 KOG1840 Kinesin light chain [C 99.2 4.8E-09 1E-13 106.3 22.0 229 229-457 201-477 (508)
65 TIGR02521 type_IV_pilW type IV 99.1 1.4E-08 3.1E-13 95.3 23.0 197 192-426 31-233 (234)
66 KOG1173 Anaphase-promoting com 99.1 1.1E-07 2.3E-12 94.0 27.7 272 98-404 243-530 (611)
67 KOG2047 mRNA splicing factor [ 99.1 1.2E-06 2.5E-11 87.9 34.0 170 68-239 102-293 (835)
68 PRK12370 invasion protein regu 99.1 2E-08 4.4E-13 106.6 23.6 211 241-459 275-502 (553)
69 PRK11189 lipoprotein NlpI; Pro 99.0 3E-08 6.6E-13 96.3 21.2 211 241-460 40-266 (296)
70 KOG4162 Predicted calmodulin-b 99.0 2E-07 4.4E-12 95.3 27.2 384 66-459 321-783 (799)
71 KOG3785 Uncharacterized conser 99.0 6.1E-07 1.3E-11 83.5 28.0 434 13-460 29-491 (557)
72 KOG1174 Anaphase-promoting com 99.0 4.8E-06 1E-10 79.4 32.8 380 71-459 100-500 (564)
73 KOG4162 Predicted calmodulin-b 99.0 1.9E-06 4E-11 88.5 31.3 391 34-431 320-789 (799)
74 PRK11189 lipoprotein NlpI; Pro 99.0 1.9E-07 4E-12 90.8 23.4 215 207-429 41-269 (296)
75 COG3063 PilF Tfp pilus assembl 99.0 7.1E-08 1.5E-12 84.8 17.3 163 295-461 37-204 (250)
76 KOG3616 Selective LIM binding 98.9 1.6E-06 3.6E-11 87.9 28.6 52 105-156 621-674 (1636)
77 KOG1840 Kinesin light chain [C 98.9 1.4E-07 3.1E-12 95.7 21.7 162 263-424 284-478 (508)
78 KOG1129 TPR repeat-containing 98.9 5.5E-08 1.2E-12 89.4 16.7 227 165-429 227-462 (478)
79 KOG1129 TPR repeat-containing 98.9 6.4E-08 1.4E-12 89.0 17.1 219 237-460 233-459 (478)
80 PF04733 Coatomer_E: Coatomer 98.9 1.6E-07 3.4E-12 90.0 17.4 248 171-430 11-270 (290)
81 PF12569 NARP1: NMDA receptor- 98.9 1.5E-05 3.1E-10 82.3 32.7 254 195-455 197-516 (517)
82 KOG1125 TPR repeat-containing 98.8 1.2E-07 2.6E-12 94.1 15.6 218 238-458 296-526 (579)
83 KOG3785 Uncharacterized conser 98.8 5.8E-06 1.3E-10 77.2 25.0 396 45-456 30-454 (557)
84 KOG0624 dsRNA-activated protei 98.8 6.4E-06 1.4E-10 76.6 25.0 304 103-429 42-374 (504)
85 KOG3616 Selective LIM binding 98.8 2.4E-05 5.2E-10 79.7 31.0 402 11-460 594-1025(1636)
86 PF04733 Coatomer_E: Coatomer 98.8 1.1E-07 2.4E-12 91.1 13.9 246 200-459 9-265 (290)
87 COG3063 PilF Tfp pilus assembl 98.8 2.7E-06 5.9E-11 75.0 20.4 193 235-430 43-241 (250)
88 cd05804 StaR_like StaR_like; a 98.8 1.2E-05 2.5E-10 81.1 28.5 293 164-460 9-337 (355)
89 PRK04841 transcriptional regul 98.7 2.3E-05 4.9E-10 89.6 33.7 353 108-460 350-761 (903)
90 KOG4340 Uncharacterized conser 98.7 1.1E-05 2.4E-10 73.6 23.4 405 40-458 13-442 (459)
91 KOG1156 N-terminal acetyltrans 98.7 7.7E-05 1.7E-09 75.5 31.2 377 38-423 76-509 (700)
92 KOG2376 Signal recognition par 98.7 8.6E-05 1.9E-09 74.3 31.2 406 44-459 19-487 (652)
93 PF12569 NARP1: NMDA receptor- 98.7 3.6E-06 7.8E-11 86.7 22.9 123 266-390 198-331 (517)
94 KOG0548 Molecular co-chaperone 98.7 1.5E-05 3.4E-10 78.7 25.9 215 231-459 228-455 (539)
95 KOG0985 Vesicle coat protein c 98.7 9.5E-05 2.1E-09 78.2 32.0 240 191-456 983-1246(1666)
96 KOG3617 WD40 and TPR repeat-co 98.7 3.4E-05 7.3E-10 79.7 27.8 364 6-414 757-1189(1416)
97 KOG3617 WD40 and TPR repeat-co 98.7 4.8E-05 1E-09 78.7 28.4 389 16-454 738-1169(1416)
98 KOG1127 TPR repeat-containing 98.6 9.2E-06 2E-10 85.6 23.4 174 279-456 800-993 (1238)
99 KOG1156 N-terminal acetyltrans 98.6 7E-05 1.5E-09 75.7 27.6 415 39-461 10-470 (700)
100 TIGR03302 OM_YfiO outer membra 98.6 5.1E-06 1.1E-10 78.2 19.2 178 262-459 33-232 (235)
101 cd05804 StaR_like StaR_like; a 98.6 4.1E-05 8.8E-10 77.2 26.8 19 406-424 317-335 (355)
102 PRK04841 transcriptional regul 98.6 0.00016 3.5E-09 82.6 33.4 351 78-428 351-763 (903)
103 PRK10370 formate-dependent nit 98.5 7.5E-06 1.6E-10 74.1 17.7 147 300-460 23-174 (198)
104 KOG1070 rRNA processing protei 98.5 1E-05 2.2E-10 88.1 20.5 200 259-462 1455-1666(1710)
105 KOG1914 mRNA cleavage and poly 98.5 0.00016 3.5E-09 71.7 26.7 404 4-413 18-527 (656)
106 KOG0548 Molecular co-chaperone 98.5 4.2E-05 9E-10 75.8 22.8 183 266-459 228-421 (539)
107 KOG0624 dsRNA-activated protei 98.5 0.00011 2.4E-09 68.6 23.3 301 72-390 42-367 (504)
108 PF12854 PPR_1: PPR repeat 98.5 2.3E-07 4.9E-12 56.7 4.1 33 257-289 2-34 (34)
109 KOG1914 mRNA cleavage and poly 98.5 0.0012 2.7E-08 65.6 31.6 419 34-456 17-536 (656)
110 KOG4340 Uncharacterized conser 98.5 3E-05 6.5E-10 70.9 19.2 300 133-455 13-335 (459)
111 PRK15359 type III secretion sy 98.5 5.9E-06 1.3E-10 70.7 14.1 122 314-441 14-137 (144)
112 KOG1070 rRNA processing protei 98.5 2.5E-05 5.3E-10 85.2 21.5 226 194-424 1460-1699(1710)
113 KOG1127 TPR repeat-containing 98.5 2.7E-05 5.9E-10 82.2 21.1 168 53-220 474-658 (1238)
114 KOG0985 Vesicle coat protein c 98.5 0.0024 5.3E-08 68.1 35.0 87 297-386 1283-1376(1666)
115 PF12854 PPR_1: PPR repeat 98.4 3.5E-07 7.6E-12 55.8 4.3 32 359-390 2-33 (34)
116 PRK15363 pathogenicity island 98.4 6.2E-06 1.3E-10 69.4 12.3 118 364-505 35-154 (157)
117 PRK15359 type III secretion sy 98.4 1.8E-05 3.8E-10 67.8 15.4 107 349-460 14-122 (144)
118 PLN02789 farnesyltranstransfer 98.4 0.00011 2.3E-09 71.6 21.7 177 278-457 88-300 (320)
119 KOG1125 TPR repeat-containing 98.3 2.9E-05 6.3E-10 77.5 17.3 212 140-355 295-525 (579)
120 COG5010 TadD Flp pilus assembl 98.3 2.1E-05 4.6E-10 71.1 14.3 133 325-459 63-197 (257)
121 PRK15179 Vi polysaccharide bio 98.3 6.6E-05 1.4E-09 80.5 20.5 140 292-435 85-227 (694)
122 TIGR03302 OM_YfiO outer membra 98.3 6.3E-05 1.4E-09 70.8 17.9 181 226-427 32-234 (235)
123 PRK10370 formate-dependent nit 98.3 0.00012 2.5E-09 66.3 18.6 156 268-434 22-182 (198)
124 KOG1128 Uncharacterized conser 98.3 3.3E-05 7.2E-10 79.1 16.3 189 257-460 393-583 (777)
125 TIGR00756 PPR pentatricopeptid 98.2 1.9E-06 4.1E-11 53.4 4.2 35 294-328 1-35 (35)
126 PRK14720 transcript cleavage f 98.2 0.00034 7.3E-09 76.0 23.4 234 159-441 29-268 (906)
127 COG5010 TadD Flp pilus assembl 98.2 0.0002 4.2E-09 64.9 18.1 152 298-452 71-224 (257)
128 KOG3081 Vesicle coat complex C 98.2 0.0011 2.4E-08 60.1 22.5 155 268-429 114-275 (299)
129 KOG1128 Uncharacterized conser 98.2 8.4E-05 1.8E-09 76.3 17.1 210 233-460 404-617 (777)
130 TIGR02552 LcrH_SycD type III s 98.1 3.1E-05 6.7E-10 65.7 11.5 97 363-459 16-114 (135)
131 TIGR00756 PPR pentatricopeptid 98.1 3.9E-06 8.5E-11 52.0 4.5 35 193-227 1-35 (35)
132 COG4783 Putative Zn-dependent 98.1 0.00028 6.1E-09 69.5 19.1 118 338-457 316-435 (484)
133 PRK15179 Vi polysaccharide bio 98.1 0.00051 1.1E-08 73.9 22.0 143 258-404 82-230 (694)
134 PLN02789 farnesyltranstransfer 98.1 0.0018 3.9E-08 63.1 24.0 225 198-428 43-305 (320)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.1E-05 1.3E-09 74.8 13.8 122 331-457 172-295 (395)
136 PF13812 PPR_3: Pentatricopept 98.1 6.5E-06 1.4E-10 50.6 4.0 33 294-326 2-34 (34)
137 COG4783 Putative Zn-dependent 98.0 0.0013 2.8E-08 65.0 21.3 147 292-460 305-455 (484)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00018 4E-09 71.4 15.3 127 264-394 171-298 (395)
139 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.4E-10 49.5 4.3 34 192-225 1-34 (34)
140 TIGR02552 LcrH_SycD type III s 98.0 0.00021 4.6E-09 60.5 13.8 113 315-431 5-120 (135)
141 PF04840 Vps16_C: Vps16, C-ter 97.9 0.024 5.3E-07 55.1 27.0 123 265-407 180-302 (319)
142 PRK14720 transcript cleavage f 97.9 0.0036 7.8E-08 68.3 23.2 149 228-407 117-268 (906)
143 KOG2053 Mitochondrial inherita 97.9 0.058 1.3E-06 57.5 34.5 124 17-141 20-155 (932)
144 PF09976 TPR_21: Tetratricopep 97.8 0.00057 1.2E-08 58.6 13.7 114 341-455 24-143 (145)
145 KOG3060 Uncharacterized conser 97.8 0.005 1.1E-07 55.6 19.5 161 269-434 59-229 (289)
146 PF01535 PPR: PPR repeat; Int 97.8 2.2E-05 4.8E-10 47.0 3.3 31 294-324 1-31 (31)
147 cd00189 TPR Tetratricopeptide 97.8 0.00019 4.1E-09 55.9 9.7 92 367-458 3-96 (100)
148 KOG3081 Vesicle coat complex C 97.8 0.0047 1E-07 56.2 18.6 243 199-457 15-269 (299)
149 PF12895 Apc3: Anaphase-promot 97.8 3.1E-05 6.7E-10 59.4 4.0 78 377-455 2-83 (84)
150 KOG2041 WD40 repeat protein [G 97.7 0.056 1.2E-06 55.9 27.4 208 21-250 678-901 (1189)
151 PLN03088 SGT1, suppressor of 97.7 0.00044 9.6E-09 69.0 13.0 97 337-435 11-109 (356)
152 KOG3060 Uncharacterized conser 97.7 0.0034 7.3E-08 56.7 16.8 162 295-460 54-221 (289)
153 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00043 9.2E-09 57.0 10.8 93 367-459 5-105 (119)
154 PF09976 TPR_21: Tetratricopep 97.7 0.0025 5.4E-08 54.6 15.8 123 296-422 15-144 (145)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00071 1.5E-08 55.6 11.9 103 331-433 5-113 (119)
156 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 45.5 3.4 31 193-223 1-31 (31)
157 PF13414 TPR_11: TPR repeat; P 97.7 0.0001 2.2E-09 54.0 5.7 64 395-458 2-66 (69)
158 PRK10153 DNA-binding transcrip 97.6 0.0024 5.3E-08 66.6 17.0 139 290-430 334-487 (517)
159 KOG0553 TPR repeat-containing 97.6 0.00033 7.1E-09 64.8 9.3 92 337-430 90-183 (304)
160 PRK02603 photosystem I assembl 97.6 0.00077 1.7E-08 59.8 11.1 82 364-445 35-121 (172)
161 PF05843 Suf: Suppressor of fo 97.6 0.0028 6E-08 61.0 15.5 143 294-440 2-150 (280)
162 KOG0553 TPR repeat-containing 97.6 0.00064 1.4E-08 62.9 10.1 96 301-401 89-187 (304)
163 PF04840 Vps16_C: Vps16, C-ter 97.5 0.069 1.5E-06 52.1 24.6 112 328-456 177-288 (319)
164 PF13432 TPR_16: Tetratricopep 97.5 0.00023 5E-09 51.3 5.8 57 402-458 3-59 (65)
165 CHL00033 ycf3 photosystem I as 97.5 0.0009 1.9E-08 59.1 10.7 94 363-456 34-139 (168)
166 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.11 2.3E-06 51.2 27.2 132 294-429 398-535 (660)
167 COG3898 Uncharacterized membra 97.5 0.044 9.5E-07 52.8 21.4 274 173-458 96-391 (531)
168 cd00189 TPR Tetratricopeptide 97.5 0.0016 3.4E-08 50.5 10.4 62 366-427 36-99 (100)
169 PRK02603 photosystem I assembl 97.4 0.0049 1.1E-07 54.6 14.1 131 292-445 34-166 (172)
170 PRK15331 chaperone protein Sic 97.4 0.0045 9.8E-08 52.6 12.8 89 370-458 43-133 (165)
171 PF13432 TPR_16: Tetratricopep 97.4 0.00059 1.3E-08 49.2 6.5 61 370-430 3-65 (65)
172 PLN03088 SGT1, suppressor of 97.4 0.003 6.6E-08 63.0 13.5 103 300-405 9-112 (356)
173 PF14559 TPR_19: Tetratricopep 97.4 0.00037 8E-09 50.8 5.3 52 407-458 2-53 (68)
174 COG4235 Cytochrome c biogenesi 97.4 0.0014 3.1E-08 61.0 10.1 101 361-461 153-258 (287)
175 CHL00033 ycf3 photosystem I as 97.3 0.016 3.5E-07 51.0 15.9 81 293-375 35-117 (168)
176 PF14938 SNAP: Soluble NSF att 97.3 0.14 3E-06 49.5 23.0 107 295-402 157-274 (282)
177 PF13371 TPR_9: Tetratricopept 97.2 0.00096 2.1E-08 49.4 5.9 57 404-460 3-59 (73)
178 PF14938 SNAP: Soluble NSF att 97.2 0.054 1.2E-06 52.3 19.5 116 300-430 101-230 (282)
179 PF07079 DUF1347: Protein of u 97.2 0.28 6E-06 48.6 30.4 114 340-456 391-521 (549)
180 COG3898 Uncharacterized membra 97.2 0.25 5.5E-06 47.8 26.8 249 194-451 84-350 (531)
181 KOG2280 Vacuolar assembly/sort 97.2 0.42 9.2E-06 50.3 26.9 322 102-454 440-794 (829)
182 PF12895 Apc3: Anaphase-promot 97.2 0.0012 2.6E-08 50.4 6.3 81 306-389 2-83 (84)
183 KOG0550 Molecular chaperone (D 97.1 0.017 3.7E-07 56.0 14.8 264 169-460 57-351 (486)
184 KOG2796 Uncharacterized conser 97.1 0.018 3.9E-07 52.4 13.3 230 100-332 70-323 (366)
185 PF13414 TPR_11: TPR repeat; P 97.1 0.0014 3.1E-08 47.8 5.6 65 363-427 2-69 (69)
186 COG4700 Uncharacterized protei 97.1 0.079 1.7E-06 45.7 16.3 133 324-458 85-221 (251)
187 PRK10153 DNA-binding transcrip 97.1 0.021 4.5E-07 59.8 15.9 134 323-460 332-483 (517)
188 PF14559 TPR_19: Tetratricopep 97.1 0.00087 1.9E-08 48.8 4.3 61 340-402 3-64 (68)
189 PF10037 MRP-S27: Mitochondria 97.0 0.011 2.4E-07 59.3 13.2 120 222-341 61-186 (429)
190 PF13431 TPR_17: Tetratricopep 97.0 0.00036 7.7E-09 42.5 1.6 33 419-451 2-34 (34)
191 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.45 9.6E-06 47.1 23.1 141 262-407 397-546 (660)
192 PF12688 TPR_5: Tetratrico pep 97.0 0.01 2.2E-07 48.4 10.1 86 370-455 7-100 (120)
193 COG4700 Uncharacterized protei 96.9 0.025 5.4E-07 48.7 12.4 102 358-459 83-189 (251)
194 KOG1130 Predicted G-alpha GTPa 96.9 0.0067 1.5E-07 58.5 9.9 256 202-458 27-343 (639)
195 KOG2280 Vacuolar assembly/sort 96.9 0.73 1.6E-05 48.6 28.4 322 41-388 441-794 (829)
196 PF08579 RPM2: Mitochondrial r 96.9 0.016 3.4E-07 45.6 10.0 81 295-376 27-116 (120)
197 PF08579 RPM2: Mitochondrial r 96.9 0.015 3.3E-07 45.7 9.7 81 194-274 27-116 (120)
198 PF12688 TPR_5: Tetratrico pep 96.9 0.028 6.1E-07 45.8 11.8 106 198-303 7-116 (120)
199 PF13281 DUF4071: Domain of un 96.8 0.19 4E-06 49.6 19.2 159 268-429 147-338 (374)
200 PRK10803 tol-pal system protei 96.8 0.011 2.3E-07 56.0 10.1 95 365-459 144-246 (263)
201 PF06239 ECSIT: Evolutionarily 96.8 0.02 4.3E-07 51.0 10.8 97 282-379 34-153 (228)
202 PF05843 Suf: Suppressor of fo 96.7 0.015 3.2E-07 56.0 11.0 129 329-459 2-136 (280)
203 PRK15363 pathogenicity island 96.7 0.048 1E-06 46.3 12.5 90 267-357 40-132 (157)
204 PRK10866 outer membrane biogen 96.7 0.21 4.5E-06 46.9 18.2 173 268-457 38-239 (243)
205 KOG2796 Uncharacterized conser 96.7 0.15 3.3E-06 46.6 16.1 167 265-431 139-321 (366)
206 PF10037 MRP-S27: Mitochondria 96.7 0.017 3.7E-07 58.0 11.1 109 167-275 72-186 (429)
207 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.0086 1.9E-07 59.5 8.4 63 363-425 74-141 (453)
208 PF13371 TPR_9: Tetratricopept 96.6 0.0075 1.6E-07 44.5 6.1 63 371-433 2-66 (73)
209 KOG2053 Mitochondrial inherita 96.5 1.5 3.3E-05 47.3 36.2 181 8-189 43-254 (932)
210 KOG1538 Uncharacterized conser 96.5 0.32 7E-06 50.1 18.8 125 268-424 709-845 (1081)
211 KOG1538 Uncharacterized conser 96.5 0.1 2.3E-06 53.5 15.3 57 6-64 556-612 (1081)
212 PF13428 TPR_14: Tetratricopep 96.5 0.0043 9.3E-08 40.4 3.9 42 397-438 2-43 (44)
213 PRK10866 outer membrane biogen 96.5 0.75 1.6E-05 43.1 20.5 56 199-256 39-98 (243)
214 KOG0550 Molecular chaperone (D 96.4 0.49 1.1E-05 46.3 18.7 147 238-390 180-347 (486)
215 KOG0543 FKBP-type peptidyl-pro 96.4 0.044 9.5E-07 53.4 11.6 88 372-459 216-320 (397)
216 PRK10803 tol-pal system protei 96.3 0.062 1.3E-06 50.8 12.2 101 330-430 145-251 (263)
217 KOG2066 Vacuolar assembly/sort 96.3 2 4.2E-05 45.8 26.3 99 44-142 363-467 (846)
218 PF06239 ECSIT: Evolutionarily 96.3 0.034 7.4E-07 49.5 9.3 96 181-276 34-152 (228)
219 KOG1130 Predicted G-alpha GTPa 96.2 0.018 3.9E-07 55.6 7.9 127 229-355 197-342 (639)
220 KOG1258 mRNA processing protei 96.2 1.9 4.1E-05 44.6 25.1 181 260-445 295-490 (577)
221 PF12921 ATP13: Mitochondrial 96.2 0.058 1.2E-06 44.5 9.6 47 359-405 47-97 (126)
222 PF13424 TPR_12: Tetratricopep 96.1 0.009 1.9E-07 44.8 4.5 24 366-389 7-30 (78)
223 PF07079 DUF1347: Protein of u 96.1 1.7 3.6E-05 43.3 25.3 377 9-401 80-530 (549)
224 PF12921 ATP13: Mitochondrial 96.0 0.093 2E-06 43.3 10.2 52 323-374 47-98 (126)
225 PF09205 DUF1955: Domain of un 96.0 0.56 1.2E-05 38.2 13.8 139 305-462 14-152 (161)
226 PF13424 TPR_12: Tetratricopep 96.0 0.01 2.2E-07 44.4 4.1 63 396-458 5-74 (78)
227 PF13525 YfiO: Outer membrane 95.9 1.4 2.9E-05 40.2 18.6 48 335-382 148-196 (203)
228 COG0457 NrfG FOG: TPR repeat [ 95.7 1.6 3.5E-05 39.8 26.6 195 262-458 59-264 (291)
229 PF03704 BTAD: Bacterial trans 95.7 0.044 9.5E-07 46.9 7.3 61 398-458 64-124 (146)
230 PF13525 YfiO: Outer membrane 95.6 1.1 2.4E-05 40.7 16.9 144 296-459 8-170 (203)
231 KOG4555 TPR repeat-containing 95.5 0.13 2.7E-06 41.7 8.6 89 372-460 51-145 (175)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.094 2E-06 52.4 9.6 60 328-390 75-138 (453)
233 KOG2041 WD40 repeat protein [G 95.5 4.1 8.9E-05 42.9 26.9 241 53-321 679-951 (1189)
234 PRK11906 transcriptional regul 95.4 0.8 1.7E-05 46.1 15.8 158 294-454 252-431 (458)
235 PF13512 TPR_18: Tetratricopep 95.3 0.39 8.4E-06 40.1 11.3 59 373-431 19-82 (142)
236 PRK11906 transcriptional regul 95.2 0.35 7.6E-06 48.5 12.7 117 343-459 273-401 (458)
237 COG4235 Cytochrome c biogenesi 95.1 1.2 2.6E-05 42.0 15.0 101 327-429 155-260 (287)
238 KOG0543 FKBP-type peptidyl-pro 95.0 0.23 4.9E-06 48.6 10.4 138 300-459 215-355 (397)
239 COG1729 Uncharacterized protei 94.9 0.17 3.7E-06 46.9 8.9 91 366-459 144-244 (262)
240 COG0457 NrfG FOG: TPR repeat [ 94.9 3 6.5E-05 38.0 23.2 197 228-428 60-268 (291)
241 KOG3941 Intermediate in Toll s 94.7 0.34 7.4E-06 44.8 10.1 99 281-380 53-174 (406)
242 PF10300 DUF3808: Protein of u 94.7 4.8 0.0001 42.0 20.0 78 144-221 247-334 (468)
243 PF03704 BTAD: Bacterial trans 94.7 0.28 6.1E-06 41.9 9.4 69 297-366 66-138 (146)
244 PF04184 ST7: ST7 protein; In 94.6 1.5 3.2E-05 44.4 15.0 152 305-468 180-333 (539)
245 smart00299 CLH Clathrin heavy 94.5 2.1 4.5E-05 36.1 14.3 67 328-407 69-136 (140)
246 PF10300 DUF3808: Protein of u 94.5 1.9 4.1E-05 44.9 16.5 157 299-458 194-375 (468)
247 PF00515 TPR_1: Tetratricopept 94.4 0.076 1.6E-06 32.1 3.8 32 397-428 2-33 (34)
248 PF04053 Coatomer_WDAD: Coatom 94.4 0.5 1.1E-05 48.4 11.8 133 302-460 270-403 (443)
249 PRK09687 putative lyase; Provi 94.2 5.4 0.00012 38.3 22.8 236 28-272 28-277 (280)
250 PF07719 TPR_2: Tetratricopept 94.2 0.12 2.6E-06 31.0 4.5 33 397-429 2-34 (34)
251 PF13512 TPR_18: Tetratricopep 93.8 2 4.4E-05 35.9 12.2 89 340-429 22-132 (142)
252 KOG2610 Uncharacterized conser 93.8 0.59 1.3E-05 44.4 9.9 159 305-466 115-283 (491)
253 KOG1941 Acetylcholine receptor 93.7 1.7 3.8E-05 41.9 12.7 119 336-454 130-270 (518)
254 KOG1920 IkappaB kinase complex 93.5 13 0.00029 41.9 20.6 95 169-292 960-1056(1265)
255 PF04184 ST7: ST7 protein; In 93.5 6.8 0.00015 39.9 17.1 17 414-430 364-380 (539)
256 KOG1585 Protein required for f 93.4 6.3 0.00014 36.1 15.6 143 295-454 93-251 (308)
257 COG3118 Thioredoxin domain-con 93.3 1.6 3.4E-05 41.2 11.7 29 192-220 236-264 (304)
258 PF13281 DUF4071: Domain of un 93.3 5 0.00011 39.8 15.9 32 205-236 195-226 (374)
259 smart00299 CLH Clathrin heavy 93.2 4.5 9.7E-05 34.1 14.5 126 296-441 10-136 (140)
260 KOG2610 Uncharacterized conser 93.2 2.7 5.8E-05 40.2 13.1 179 273-455 114-311 (491)
261 PF04053 Coatomer_WDAD: Coatom 93.1 2.6 5.6E-05 43.3 14.3 105 269-391 325-429 (443)
262 PRK11619 lytic murein transgly 92.8 17 0.00036 39.6 32.2 116 306-424 254-374 (644)
263 PRK09687 putative lyase; Provi 92.8 9.5 0.00021 36.6 25.8 119 297-427 146-265 (280)
264 KOG1585 Protein required for f 92.8 4.3 9.4E-05 37.1 13.2 100 102-219 34-137 (308)
265 KOG2114 Vacuolar assembly/sort 92.7 18 0.00038 39.4 28.5 75 370-445 711-786 (933)
266 KOG4555 TPR repeat-containing 92.6 0.88 1.9E-05 37.0 7.9 90 337-428 52-147 (175)
267 COG1729 Uncharacterized protei 92.6 1.2 2.6E-05 41.5 10.0 88 342-429 155-248 (262)
268 COG4105 ComL DNA uptake lipopr 92.5 8.5 0.00018 35.7 15.2 167 172-356 45-232 (254)
269 COG4785 NlpI Lipoprotein NlpI, 92.5 7.2 0.00016 35.1 13.9 160 293-460 99-267 (297)
270 KOG3941 Intermediate in Toll s 92.4 0.95 2.1E-05 42.0 8.9 97 181-277 54-173 (406)
271 PRK15331 chaperone protein Sic 92.2 3.2 7E-05 35.6 11.2 84 304-390 48-131 (165)
272 COG4105 ComL DNA uptake lipopr 92.1 10 0.00022 35.2 20.4 57 402-458 173-232 (254)
273 KOG1258 mRNA processing protei 92.0 18 0.00038 37.8 24.0 365 7-379 46-490 (577)
274 KOG4234 TPR repeat-containing 91.7 1.1 2.3E-05 39.5 7.9 88 372-459 103-197 (271)
275 COG3118 Thioredoxin domain-con 91.5 13 0.00028 35.3 16.4 141 302-444 143-286 (304)
276 PF08631 SPO22: Meiosis protei 91.2 15 0.00032 35.3 21.5 19 405-423 255-273 (278)
277 PF13181 TPR_8: Tetratricopept 91.1 0.37 8E-06 28.9 3.5 31 398-428 3-33 (34)
278 PF02259 FAT: FAT domain; Int 90.7 19 0.00041 35.8 20.1 149 291-441 144-303 (352)
279 KOG2114 Vacuolar assembly/sort 90.7 12 0.00026 40.6 15.7 52 300-352 404-455 (933)
280 PRK13800 putative oxidoreducta 90.4 38 0.00083 38.8 24.0 252 89-356 625-880 (897)
281 COG3629 DnrI DNA-binding trans 90.3 2 4.4E-05 40.6 9.1 76 262-337 153-236 (280)
282 PF13170 DUF4003: Protein of u 90.2 19 0.0004 34.9 16.7 134 209-373 79-226 (297)
283 PF09205 DUF1955: Domain of un 89.5 11 0.00023 31.1 14.7 62 295-357 88-149 (161)
284 KOG2396 HAT (Half-A-TPR) repea 89.4 27 0.00059 35.7 23.5 103 324-429 455-564 (568)
285 KOG1941 Acetylcholine receptor 89.3 15 0.00032 35.9 13.8 126 299-424 128-274 (518)
286 PF09613 HrpB1_HrpK: Bacterial 89.3 13 0.00028 31.9 12.9 90 336-428 18-109 (160)
287 PF13176 TPR_7: Tetratricopept 89.3 0.9 2E-05 27.8 4.1 26 295-320 1-26 (36)
288 PF13428 TPR_14: Tetratricopep 89.2 0.97 2.1E-05 29.1 4.5 25 366-390 3-27 (44)
289 KOG0890 Protein kinase of the 89.1 66 0.0014 39.7 22.5 308 136-461 1389-1733(2382)
290 PF13176 TPR_7: Tetratricopept 89.1 0.65 1.4E-05 28.4 3.4 25 399-423 2-26 (36)
291 COG3629 DnrI DNA-binding trans 89.1 2 4.4E-05 40.6 8.1 61 398-458 155-215 (280)
292 PF09613 HrpB1_HrpK: Bacterial 88.8 1.6 3.6E-05 37.2 6.6 38 407-444 55-92 (160)
293 PF10602 RPN7: 26S proteasome 88.8 10 0.00022 33.5 12.1 94 295-390 38-139 (177)
294 COG4649 Uncharacterized protei 88.6 6.1 0.00013 34.1 9.7 54 274-327 144-201 (221)
295 PF10345 Cohesin_load: Cohesin 88.4 42 0.00091 36.5 23.5 57 401-457 539-604 (608)
296 TIGR02561 HrpB1_HrpK type III 88.2 1.8 4E-05 36.3 6.4 53 408-460 22-74 (153)
297 TIGR02270 conserved hypothetic 87.8 34 0.00074 34.9 21.0 194 87-291 88-281 (410)
298 KOG1586 Protein required for f 87.8 17 0.00038 33.2 12.5 61 369-429 118-187 (288)
299 PF02259 FAT: FAT domain; Int 87.4 27 0.00059 34.7 16.0 68 394-461 144-215 (352)
300 KOG1464 COP9 signalosome, subu 87.4 17 0.00036 33.9 12.4 139 82-220 41-219 (440)
301 PF00637 Clathrin: Region in C 87.0 0.023 5E-07 48.5 -5.7 55 232-286 12-66 (143)
302 PF14853 Fis1_TPR_C: Fis1 C-te 87.0 3.8 8.1E-05 27.8 6.2 50 433-509 4-53 (53)
303 PRK15180 Vi polysaccharide bio 86.8 5.5 0.00012 40.0 9.7 85 374-458 333-419 (831)
304 PF04097 Nic96: Nup93/Nic96; 86.8 21 0.00045 38.8 15.2 43 100-143 113-158 (613)
305 PF07035 Mic1: Colon cancer-as 86.0 22 0.00048 30.9 15.0 85 295-390 31-115 (167)
306 PF00515 TPR_1: Tetratricopept 85.8 2 4.3E-05 25.6 4.2 28 294-321 2-29 (34)
307 PF07035 Mic1: Colon cancer-as 85.7 23 0.0005 30.8 14.0 136 312-460 13-150 (167)
308 PF06552 TOM20_plant: Plant sp 85.5 8.7 0.00019 33.5 9.2 44 412-462 96-139 (186)
309 KOG1920 IkappaB kinase complex 84.7 80 0.0017 36.2 19.0 107 273-390 919-1025(1265)
310 PF14853 Fis1_TPR_C: Fis1 C-te 84.7 3.4 7.3E-05 28.0 5.1 30 401-430 6-35 (53)
311 PF10602 RPN7: 26S proteasome 84.6 13 0.00028 32.8 10.4 95 263-357 37-142 (177)
312 PRK10941 hypothetical protein; 83.9 8.4 0.00018 36.6 9.4 62 398-459 183-244 (269)
313 PF13374 TPR_10: Tetratricopep 83.7 2.6 5.6E-05 26.4 4.3 27 398-424 4-30 (42)
314 KOG0276 Vesicle coat complex C 83.6 23 0.00049 37.1 12.5 149 274-456 598-747 (794)
315 KOG4648 Uncharacterized conser 83.6 2 4.2E-05 41.1 4.9 111 335-452 104-217 (536)
316 KOG3364 Membrane protein invol 83.5 11 0.00025 31.0 8.4 47 412-458 51-99 (149)
317 KOG4570 Uncharacterized conser 83.4 10 0.00022 36.1 9.3 97 257-357 59-164 (418)
318 KOG2066 Vacuolar assembly/sort 82.7 78 0.0017 34.5 23.1 99 13-111 363-467 (846)
319 COG1747 Uncharacterized N-term 82.7 62 0.0014 33.3 19.2 159 225-390 64-231 (711)
320 TIGR02561 HrpB1_HrpK type III 81.5 21 0.00045 30.2 9.5 26 194-219 95-120 (153)
321 PF07721 TPR_4: Tetratricopept 81.5 1.7 3.8E-05 24.2 2.4 24 431-454 2-25 (26)
322 PF07719 TPR_2: Tetratricopept 80.7 2.2 4.9E-05 25.2 2.9 29 431-459 2-30 (34)
323 TIGR02508 type_III_yscG type I 80.7 25 0.00054 27.4 9.6 62 269-333 46-107 (115)
324 PF13431 TPR_17: Tetratricopep 80.7 3.1 6.6E-05 25.1 3.4 24 259-282 10-33 (34)
325 PF13170 DUF4003: Protein of u 80.5 53 0.0011 31.8 13.6 115 309-425 78-211 (297)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 80.0 13 0.00029 28.6 7.2 62 309-372 23-84 (103)
327 PF00637 Clathrin: Region in C 80.0 0.89 1.9E-05 38.6 1.3 124 268-411 13-140 (143)
328 PF02284 COX5A: Cytochrome c o 79.8 12 0.00025 29.2 7.0 60 311-372 28-87 (108)
329 PF08631 SPO22: Meiosis protei 79.7 59 0.0013 31.2 22.6 61 295-357 86-150 (278)
330 PF13374 TPR_10: Tetratricopep 79.7 4.8 0.0001 25.1 4.4 28 294-321 3-30 (42)
331 PF13174 TPR_6: Tetratricopept 79.7 3.1 6.8E-05 24.3 3.3 26 403-428 7-32 (33)
332 smart00028 TPR Tetratricopepti 79.6 4.2 9.2E-05 22.9 4.0 31 398-428 3-33 (34)
333 PF07721 TPR_4: Tetratricopept 79.1 3.8 8.2E-05 22.8 3.3 22 367-388 4-25 (26)
334 COG2976 Uncharacterized protei 78.3 49 0.0011 29.4 14.3 114 311-429 70-192 (207)
335 PF06552 TOM20_plant: Plant sp 78.2 7.2 0.00016 34.0 6.1 46 412-457 51-100 (186)
336 PF04097 Nic96: Nup93/Nic96; 77.9 35 0.00076 37.0 12.8 42 164-205 114-158 (613)
337 KOG4648 Uncharacterized conser 77.5 11 0.00025 36.2 7.7 93 300-396 104-198 (536)
338 PF11207 DUF2989: Protein of u 77.3 12 0.00026 33.4 7.4 74 375-450 118-198 (203)
339 KOG0376 Serine-threonine phosp 77.1 5.2 0.00011 40.4 5.6 85 374-458 14-100 (476)
340 PRK09169 hypothetical protein; 76.8 2.1E+02 0.0045 35.8 37.0 449 8-456 124-692 (2316)
341 PF04910 Tcf25: Transcriptiona 76.5 81 0.0018 31.6 14.0 64 395-458 99-167 (360)
342 cd00923 Cyt_c_Oxidase_Va Cytoc 76.0 17 0.00036 28.1 6.7 58 210-269 25-83 (103)
343 PRK15180 Vi polysaccharide bio 75.3 24 0.00051 35.8 9.5 120 305-428 301-423 (831)
344 PF13181 TPR_8: Tetratricopept 74.8 5.7 0.00012 23.5 3.5 28 431-458 2-29 (34)
345 KOG4570 Uncharacterized conser 74.3 20 0.00044 34.2 8.3 95 162-257 65-165 (418)
346 PF02284 COX5A: Cytochrome c o 73.2 23 0.00049 27.7 6.9 48 389-436 38-85 (108)
347 PF13174 TPR_6: Tetratricopept 73.1 4 8.7E-05 23.8 2.5 28 432-459 2-29 (33)
348 TIGR02508 type_III_yscG type I 73.0 42 0.00092 26.2 8.4 49 77-127 48-96 (115)
349 KOG1550 Extracellular protein 73.0 1.2E+02 0.0026 32.5 15.2 155 303-464 259-431 (552)
350 PF11207 DUF2989: Protein of u 72.8 33 0.00072 30.7 9.0 72 311-383 124-197 (203)
351 KOG4279 Serine/threonine prote 72.1 78 0.0017 34.3 12.6 183 194-430 203-400 (1226)
352 COG4785 NlpI Lipoprotein NlpI, 71.8 79 0.0017 28.7 14.5 64 158-221 96-162 (297)
353 COG3947 Response regulator con 70.6 16 0.00034 34.6 6.7 60 399-458 282-341 (361)
354 TIGR02270 conserved hypothetic 69.6 1.4E+02 0.003 30.6 22.6 120 261-391 160-279 (410)
355 KOG0292 Vesicle coat complex C 69.0 7.8 0.00017 42.1 4.9 115 306-452 606-720 (1202)
356 KOG1464 COP9 signalosome, subu 67.9 1.1E+02 0.0024 28.8 17.3 239 174-419 40-326 (440)
357 TIGR03504 FimV_Cterm FimV C-te 67.8 8.5 0.00018 24.9 3.2 27 434-460 3-29 (44)
358 COG4455 ImpE Protein of avirul 67.4 23 0.00049 32.1 6.7 62 368-429 5-68 (273)
359 PRK13800 putative oxidoreducta 66.7 2.4E+02 0.0053 32.4 25.9 50 362-411 787-836 (897)
360 KOG1550 Extracellular protein 66.5 1.9E+02 0.0041 31.0 22.2 272 177-458 228-537 (552)
361 KOG1308 Hsp70-interacting prot 65.4 4.3 9.3E-05 39.1 2.1 59 403-461 155-213 (377)
362 KOG4642 Chaperone-dependent E3 65.4 16 0.00036 33.4 5.6 81 379-459 25-107 (284)
363 KOG0276 Vesicle coat complex C 64.6 65 0.0014 33.9 10.1 99 171-286 647-745 (794)
364 COG4649 Uncharacterized protei 64.0 1E+02 0.0022 27.0 16.0 121 303-424 68-195 (221)
365 PF09477 Type_III_YscG: Bacter 62.2 78 0.0017 25.1 8.9 86 242-331 21-106 (116)
366 PF14561 TPR_20: Tetratricopep 61.2 16 0.00034 28.1 4.2 43 417-459 9-51 (90)
367 PRK12798 chemotaxis protein; R 61.2 1.9E+02 0.0041 29.3 20.4 179 275-456 125-321 (421)
368 PF10366 Vps39_1: Vacuolar sor 61.0 76 0.0016 25.3 8.2 27 295-321 41-67 (108)
369 PF09986 DUF2225: Uncharacteri 60.9 52 0.0011 30.1 8.2 64 397-460 119-195 (214)
370 KOG4234 TPR repeat-containing 60.6 1E+02 0.0022 27.7 9.3 88 340-429 107-201 (271)
371 COG2909 MalT ATP-dependent tra 60.0 2.9E+02 0.0062 30.9 22.2 215 238-455 426-684 (894)
372 cd08819 CARD_MDA5_2 Caspase ac 58.7 34 0.00073 25.9 5.3 35 81-116 49-83 (88)
373 PF07163 Pex26: Pex26 protein; 58.7 1.1E+02 0.0025 29.0 9.8 87 300-389 90-183 (309)
374 PF10366 Vps39_1: Vacuolar sor 58.7 77 0.0017 25.3 7.9 28 193-220 40-67 (108)
375 KOG3364 Membrane protein invol 58.0 95 0.0021 25.9 8.1 69 362-430 30-105 (149)
376 KOG3807 Predicted membrane pro 57.6 1.3E+02 0.0028 29.2 10.1 19 414-432 380-398 (556)
377 PF09670 Cas_Cas02710: CRISPR- 57.0 1.8E+02 0.0038 29.5 12.0 122 302-424 140-269 (379)
378 TIGR03504 FimV_Cterm FimV C-te 56.7 27 0.00058 22.6 4.0 23 299-321 5-27 (44)
379 KOG1586 Protein required for f 56.4 1.7E+02 0.0036 27.1 17.0 61 372-432 162-231 (288)
380 KOG2063 Vacuolar assembly/sort 56.0 3.5E+02 0.0076 30.7 21.9 128 194-339 506-637 (877)
381 KOG0545 Aryl-hydrocarbon recep 55.9 64 0.0014 29.9 7.6 89 371-459 185-293 (329)
382 KOG4507 Uncharacterized conser 55.0 59 0.0013 34.1 8.0 67 370-436 648-716 (886)
383 PF11846 DUF3366: Domain of un 55.0 42 0.00092 30.0 6.7 35 393-427 141-175 (193)
384 KOG0890 Protein kinase of the 54.5 5.5E+02 0.012 32.5 26.1 151 42-198 1388-1552(2382)
385 COG4455 ImpE Protein of avirul 54.5 1.7E+02 0.0038 26.7 12.6 54 297-352 5-59 (273)
386 KOG0403 Neoplastic transformat 53.9 2.6E+02 0.0056 28.5 16.9 57 267-323 514-573 (645)
387 PF10579 Rapsyn_N: Rapsyn N-te 53.8 22 0.00048 26.3 3.6 45 408-452 18-65 (80)
388 PF04190 DUF410: Protein of un 53.4 2E+02 0.0044 27.2 16.9 83 260-357 88-170 (260)
389 COG4976 Predicted methyltransf 52.9 22 0.00049 32.4 4.2 56 374-429 5-62 (287)
390 PRK10941 hypothetical protein; 52.9 60 0.0013 30.9 7.5 66 367-432 184-251 (269)
391 smart00386 HAT HAT (Half-A-TPR 52.8 22 0.00048 20.3 3.1 28 410-437 1-28 (33)
392 PF11838 ERAP1_C: ERAP1-like C 52.7 2.3E+02 0.005 27.6 18.0 83 343-425 145-230 (324)
393 PF04190 DUF410: Protein of un 51.1 2.2E+02 0.0048 26.9 14.2 82 362-459 88-170 (260)
394 PF14863 Alkyl_sulf_dimr: Alky 50.0 64 0.0014 27.2 6.4 63 380-445 57-119 (141)
395 COG2976 Uncharacterized protei 49.7 1.9E+02 0.0042 25.9 14.0 53 270-322 134-188 (207)
396 PF11846 DUF3366: Domain of un 49.7 66 0.0014 28.8 7.1 51 340-390 120-170 (193)
397 KOG4077 Cytochrome c oxidase, 49.6 95 0.0021 25.5 6.8 70 311-391 67-136 (149)
398 PF10579 Rapsyn_N: Rapsyn N-te 49.4 49 0.0011 24.5 4.8 46 305-350 18-65 (80)
399 KOG2300 Uncharacterized conser 49.4 3.2E+02 0.007 28.3 23.7 175 278-454 298-509 (629)
400 KOG2422 Uncharacterized conser 49.3 2.8E+02 0.0061 29.3 11.7 62 404-465 350-414 (665)
401 PF06957 COPI_C: Coatomer (COP 48.4 86 0.0019 31.9 8.0 39 391-429 293-333 (422)
402 cd08819 CARD_MDA5_2 Caspase ac 48.1 80 0.0017 24.0 5.8 34 175-209 50-83 (88)
403 KOG3824 Huntingtin interacting 47.2 33 0.00071 32.7 4.5 60 374-433 126-187 (472)
404 PF00244 14-3-3: 14-3-3 protei 46.9 2.1E+02 0.0046 26.6 10.0 162 299-461 7-200 (236)
405 COG1747 Uncharacterized N-term 46.8 3.6E+02 0.0079 28.2 21.2 172 259-437 63-246 (711)
406 PF14689 SPOB_a: Sensor_kinase 46.1 36 0.00077 23.9 3.7 23 298-320 28-50 (62)
407 PF07720 TPR_3: Tetratricopept 45.9 52 0.0011 20.1 3.9 30 399-428 4-35 (36)
408 KOG0551 Hsp90 co-chaperone CNS 45.6 1.1E+02 0.0023 29.9 7.7 91 365-455 82-178 (390)
409 cd08326 CARD_CASP9 Caspase act 45.6 46 0.001 25.1 4.4 58 59-116 21-78 (84)
410 KOG0686 COP9 signalosome, subu 44.9 3.1E+02 0.0068 27.7 10.8 158 39-200 152-352 (466)
411 PF07163 Pex26: Pex26 protein; 44.8 2.2E+02 0.0047 27.1 9.3 20 419-438 267-286 (309)
412 PF13762 MNE1: Mitochondrial s 44.6 1.3E+02 0.0027 25.6 7.2 50 191-240 78-128 (145)
413 PF11768 DUF3312: Protein of u 44.6 3.7E+02 0.008 28.4 11.9 23 267-289 413-435 (545)
414 PF14689 SPOB_a: Sensor_kinase 44.4 39 0.00084 23.7 3.7 44 177-220 6-51 (62)
415 cd08326 CARD_CASP9 Caspase act 44.2 70 0.0015 24.2 5.2 60 152-211 21-80 (84)
416 PRK13342 recombination factor 44.1 3.7E+02 0.0081 27.5 14.7 44 296-339 230-276 (413)
417 KOG1498 26S proteasome regulat 44.1 3.5E+02 0.0075 27.2 15.4 108 368-479 135-261 (439)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 43.6 1.3E+02 0.0028 24.7 7.3 42 414-455 81-124 (126)
419 KOG0687 26S proteasome regulat 43.3 3.3E+02 0.0071 26.6 12.0 10 533-542 320-329 (393)
420 PRK10564 maltose regulon perip 42.9 48 0.001 31.8 5.0 42 294-335 258-299 (303)
421 KOG4521 Nuclear pore complex, 42.5 6.1E+02 0.013 29.6 14.6 120 331-452 986-1124(1480)
422 PF11848 DUF3368: Domain of un 42.5 97 0.0021 20.3 5.2 33 304-336 13-45 (48)
423 PF11525 CopK: Copper resistan 42.5 11 0.00023 26.7 0.5 20 576-595 8-27 (73)
424 PF07575 Nucleopor_Nup85: Nup8 42.4 4.7E+02 0.01 28.2 13.9 94 191-288 371-464 (566)
425 PF14561 TPR_20: Tetratricopep 41.1 1.6E+02 0.0035 22.5 8.5 62 395-456 21-85 (90)
426 PF12862 Apc5: Anaphase-promot 41.0 1.1E+02 0.0023 23.6 6.1 24 402-425 47-70 (94)
427 PF13934 ELYS: Nuclear pore co 40.9 3E+02 0.0064 25.5 12.4 71 334-408 114-184 (226)
428 PF10345 Cohesin_load: Cohesin 40.6 5.2E+02 0.011 28.2 26.4 49 340-388 373-428 (608)
429 cd00280 TRFH Telomeric Repeat 40.4 2.3E+02 0.0049 25.2 8.2 27 403-430 118-144 (200)
430 PF12862 Apc5: Anaphase-promot 40.0 85 0.0018 24.1 5.4 53 406-458 8-69 (94)
431 PF13762 MNE1: Mitochondrial s 39.6 2.4E+02 0.0051 24.0 9.3 49 292-340 78-127 (145)
432 PF11663 Toxin_YhaV: Toxin wit 39.6 35 0.00075 28.3 3.1 32 305-338 107-138 (140)
433 PF11848 DUF3368: Domain of un 39.3 89 0.0019 20.5 4.5 33 202-234 12-44 (48)
434 PF11663 Toxin_YhaV: Toxin wit 39.2 33 0.00072 28.4 2.9 32 203-236 106-137 (140)
435 PRK10564 maltose regulon perip 39.1 48 0.001 31.8 4.4 38 194-231 259-296 (303)
436 PF04910 Tcf25: Transcriptiona 38.7 4.2E+02 0.0091 26.6 17.4 53 335-390 110-165 (360)
437 KOG2300 Uncharacterized conser 38.5 4.8E+02 0.01 27.1 26.3 72 22-93 70-152 (629)
438 COG5159 RPN6 26S proteasome re 37.9 3.7E+02 0.008 25.7 13.7 55 196-250 129-188 (421)
439 COG3947 Response regulator con 37.9 1.4E+02 0.0029 28.6 7.0 43 335-379 286-328 (361)
440 COG5108 RPO41 Mitochondrial DN 37.2 1.5E+02 0.0032 31.8 7.7 47 298-344 33-81 (1117)
441 PF15161 Neuropep_like: Neurop 36.0 21 0.00045 23.9 1.1 16 557-573 13-28 (65)
442 KOG0508 Ankyrin repeat protein 35.7 2.6E+02 0.0057 28.7 8.9 107 138-250 89-203 (615)
443 PF12968 DUF3856: Domain of Un 35.2 2.5E+02 0.0054 22.9 7.9 62 395-456 54-126 (144)
444 COG0735 Fur Fe2+/Zn2+ uptake r 35.1 1.7E+02 0.0037 24.8 6.8 47 195-241 23-69 (145)
445 KOG2422 Uncharacterized conser 35.1 5.8E+02 0.013 27.2 14.2 56 199-254 349-405 (665)
446 KOG3824 Huntingtin interacting 34.4 65 0.0014 30.8 4.4 53 339-394 127-181 (472)
447 PF11768 DUF3312: Protein of u 34.3 3.3E+02 0.0071 28.8 9.7 58 164-221 411-473 (545)
448 PRK11619 lytic murein transgly 34.2 6.7E+02 0.014 27.6 40.7 184 264-463 314-509 (644)
449 KOG4507 Uncharacterized conser 34.0 1.5E+02 0.0033 31.3 7.2 132 325-459 568-705 (886)
450 PF10255 Paf67: RNA polymerase 33.2 2.4E+02 0.0053 28.6 8.5 56 265-320 125-191 (404)
451 cd08332 CARD_CASP2 Caspase act 33.2 99 0.0021 23.7 4.6 55 60-114 26-80 (90)
452 PRK11639 zinc uptake transcrip 33.1 1.8E+02 0.0039 25.4 6.9 47 195-241 28-74 (169)
453 PF13934 ELYS: Nuclear pore co 32.9 4E+02 0.0086 24.6 10.7 125 266-398 80-206 (226)
454 cd08332 CARD_CASP2 Caspase act 32.8 1.3E+02 0.0029 23.0 5.3 49 160-208 33-81 (90)
455 cd00280 TRFH Telomeric Repeat 32.7 2.4E+02 0.0051 25.1 7.1 56 344-399 85-146 (200)
456 KOG2396 HAT (Half-A-TPR) repea 32.6 6E+02 0.013 26.6 26.6 239 210-457 300-557 (568)
457 PRK14700 recombination factor 32.3 3.5E+02 0.0075 26.2 8.9 68 191-258 122-197 (300)
458 KOG4077 Cytochrome c oxidase, 32.3 2.3E+02 0.0049 23.4 6.5 40 389-428 77-116 (149)
459 KOG1498 26S proteasome regulat 31.9 5.5E+02 0.012 25.9 15.9 100 265-390 134-238 (439)
460 PF10255 Paf67: RNA polymerase 31.9 1.7E+02 0.0036 29.8 7.2 26 132-157 124-149 (404)
461 KOG0991 Replication factor C, 31.7 4.3E+02 0.0093 24.6 10.1 55 282-338 228-282 (333)
462 KOG2659 LisH motif-containing 31.5 4E+02 0.0086 24.6 8.7 54 335-389 71-128 (228)
463 COG5108 RPO41 Mitochondrial DN 30.8 3E+02 0.0064 29.7 8.7 23 135-157 33-55 (1117)
464 COG2909 MalT ATP-dependent tra 30.8 8.2E+02 0.018 27.6 25.6 218 171-389 425-684 (894)
465 KOG0403 Neoplastic transformat 30.8 6.1E+02 0.013 26.1 16.4 56 367-422 512-569 (645)
466 smart00777 Mad3_BUB1_I Mad3/BU 30.7 3.1E+02 0.0066 22.6 7.5 40 415-454 82-123 (125)
467 COG5187 RPN7 26S proteasome re 30.6 2.3E+02 0.0051 27.0 7.2 39 352-390 103-141 (412)
468 COG5191 Uncharacterized conser 30.6 1.2E+02 0.0025 29.3 5.3 76 360-435 103-181 (435)
469 COG2912 Uncharacterized conser 30.2 1.7E+02 0.0037 27.7 6.5 60 400-459 185-244 (269)
470 PF11123 DNA_Packaging_2: DNA 30.2 87 0.0019 22.7 3.4 29 53-81 13-44 (82)
471 PF09477 Type_III_YscG: Bacter 30.0 2.9E+02 0.0062 22.1 9.1 48 78-127 50-97 (116)
472 PHA02875 ankyrin repeat protei 29.9 6E+02 0.013 25.8 17.1 205 42-251 4-223 (413)
473 PF02847 MA3: MA3 domain; Int 29.5 1.7E+02 0.0037 23.2 5.8 20 168-187 9-28 (113)
474 KOG4814 Uncharacterized conser 29.3 5.5E+02 0.012 27.7 10.3 85 375-459 365-457 (872)
475 PRK13342 recombination factor 29.2 6.4E+02 0.014 25.8 11.4 44 194-237 229-275 (413)
476 PRK09169 hypothetical protein; 29.1 1.3E+03 0.029 29.5 37.8 422 36-457 245-777 (2316)
477 KOG4642 Chaperone-dependent E3 28.9 4.9E+02 0.011 24.3 9.5 80 273-354 21-104 (284)
478 PF08311 Mad3_BUB1_I: Mad3/BUB 28.8 3.3E+02 0.0071 22.4 8.2 24 365-388 100-123 (126)
479 KOG4567 GTPase-activating prot 28.5 5.6E+02 0.012 24.9 10.1 74 312-391 262-345 (370)
480 PF10475 DUF2450: Protein of u 28.1 5.5E+02 0.012 24.7 11.0 53 166-220 103-155 (291)
481 PRK13184 pknD serine/threonine 27.7 1E+03 0.022 27.6 20.4 129 329-457 689-831 (932)
482 KOG1524 WD40 repeat-containing 27.2 3.1E+02 0.0067 28.7 7.9 89 363-454 572-668 (737)
483 PF11817 Foie-gras_1: Foie gra 27.2 3.6E+02 0.0077 25.3 8.3 79 278-356 161-246 (247)
484 PF14669 Asp_Glu_race_2: Putat 26.8 4.7E+02 0.01 23.5 12.0 160 220-389 1-206 (233)
485 KOG2034 Vacuolar sorting prote 25.7 1E+03 0.022 27.0 20.8 87 138-229 366-452 (911)
486 PF02847 MA3: MA3 domain; Int 24.7 3.5E+02 0.0076 21.3 7.1 22 136-157 8-29 (113)
487 COG4941 Predicted RNA polymera 24.6 6.9E+02 0.015 24.7 11.1 126 291-429 262-398 (415)
488 cd08323 CARD_APAF1 Caspase act 24.4 2.1E+02 0.0046 21.7 5.0 57 60-116 20-76 (86)
489 PF11838 ERAP1_C: ERAP1-like C 24.4 6.6E+02 0.014 24.3 19.5 25 177-201 56-82 (324)
490 PF14595 Thioredoxin_9: Thiore 24.0 31 0.00068 28.5 0.5 27 556-582 49-81 (129)
491 KOG2581 26S proteasome regulat 23.8 7.8E+02 0.017 25.0 14.6 91 337-428 178-279 (493)
492 PF02607 B12-binding_2: B12 bi 23.8 1.4E+02 0.0031 21.7 4.1 38 304-341 12-49 (79)
493 smart00544 MA3 Domain in DAP-5 23.6 3.7E+02 0.0081 21.2 7.3 22 167-188 8-29 (113)
494 PF08424 NRDE-2: NRDE-2, neces 23.4 7.1E+02 0.015 24.4 13.4 115 309-426 47-184 (321)
495 PF12069 DUF3549: Protein of u 23.4 7.3E+02 0.016 24.6 13.0 86 268-356 172-258 (340)
496 PF08225 Antimicrobial19: Pseu 23.2 51 0.0011 17.1 1.0 11 562-572 11-21 (23)
497 KOG0292 Vesicle coat complex C 23.2 1.1E+03 0.025 26.7 12.3 130 271-424 652-781 (1202)
498 PF15015 NYD-SP12_N: Spermatog 23.0 1.7E+02 0.0036 29.6 5.1 17 370-386 234-250 (569)
499 cd07153 Fur_like Ferric uptake 23.0 1.6E+02 0.0035 23.5 4.6 46 198-243 6-51 (116)
500 PRK11639 zinc uptake transcrip 22.9 2.9E+02 0.0062 24.1 6.3 61 319-381 17-77 (169)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.9e-123 Score=1006.50 Aligned_cols=596 Identities=35% Similarity=0.644 Sum_probs=585.4
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCC-----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMP-----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQTNM 74 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~l 74 (600)
++.++|+++|.+|.+.|++++|+++|+.|. .||..+|+.++.+|++.++++.|.+++..|. .||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456799999999999999999999999996 4688999999999999999999999999997 6899999999
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHH
Q 007517 75 VLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAW 150 (600)
Q Consensus 75 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~ 150 (600)
+.+|++.|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|+..|+.+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999977 99999999999999999999999
Q ss_pred HHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 007517 151 ELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 151 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 226 (600)
++|..+. .+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999887 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhc
Q 007517 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQY 306 (600)
Q Consensus 227 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 306 (600)
..||++++.+|++.|+++.|.++|..+.+.|++||..++++||++|+++|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 007517 387 IEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 387 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
+++|++.|+..+|++|+.+|+.+|+.+.|..+++++.+++|+++.+|..|+++|++.|+|++|.++++.|+++|+.+.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCC
Q 007517 467 CSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVKLP 546 (600)
Q Consensus 467 ~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~ 546 (600)
+||+++++.+|.|.+||.+ ||+.++||..++++...|++.||.||+.+++||+++++++..+.+||||||+||||+++|
T Consensus 565 ~s~i~~~~~~~~f~~~d~~-h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRL-HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred eeEEEECCeEEEEccCCCC-CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 9999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEccccccccchhhHHHHhhhhCceEEEecCCcccccCCCccCCCCCC
Q 007517 547 EGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRDYW 600 (600)
Q Consensus 547 ~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 600 (600)
+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-120 Score=1011.15 Aligned_cols=594 Identities=36% Similarity=0.665 Sum_probs=569.8
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHH
Q 007517 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQT 72 (600)
Q Consensus 1 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~ 72 (600)
||.||+++||++|.+|++.|++++|+++|.+|. .||.+||+.++.+|++.|+++.|.+++..|. .||..+||
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 567777778888888888888888888777775 5777788888888888888888888777776 57899999
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHH
Q 007517 73 NMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQD 148 (600)
Q Consensus 73 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~ 148 (600)
+||.+|++.|++++|.++|++|.+||+++||+||.+|.+.|++++|+++|++|.+ ||..||++++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 9999999999999999999999999999999999999999999999999999976 999999999999999999999
Q ss_pred HHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 149 AWELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 149 a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
|.++|+.+. .++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|.++|+.++|+.+|++|.. +++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999999998 788899999999999999999999999999999999999999999999999999999999986 699
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 304 (600)
||..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+||++|+++|++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
++|+.++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999977899999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKP 464 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 464 (600)
+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|+.|+
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcC
Q 007517 465 PGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLAVAYGLVK 544 (600)
Q Consensus 465 ~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~ 544 (600)
||+|||++++++|.|.+||.+ ||+.++||..|+++..+|++.||.||+..++ ++++++|+..+++||||||+||||++
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~-h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDES-HPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCccEEEECCEEEEEecCCCC-CcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 999999999999999999999 9999999999999999999999999999888 44788899999999999999999999
Q ss_pred CCCCCcEEEEccccccccchhhHHHHhhhhCceEEEecCCcccccCCCccCCCC
Q 007517 545 LPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCSCRD 598 (600)
Q Consensus 545 ~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 598 (600)
||+|+||||+||||+|+|||+++|+||++++|||||||.+|||||+||+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.1e-73 Score=631.84 Aligned_cols=573 Identities=25% Similarity=0.350 Sum_probs=479.7
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHH
Q 007517 1 MPERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQT 72 (600)
Q Consensus 1 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~ 72 (600)
|++||+++||++|.+|++.|++++|+++|++|. .||.+||++++++|++.+++..+.+++..|. .+|+.++|
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 455666666666666666666666666666654 4566666666666666666666666665554 46778889
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHH
Q 007517 73 NMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQD 148 (600)
Q Consensus 73 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~ 148 (600)
+||.+|++.|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|++.|+++.
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 9999999999999999999999999999999999999999999999999999977 999999999999999999999
Q ss_pred HHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 149 AWELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 149 a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
|.++|..+. .+|..+||+|+++|+++|++++|.++|++|..+|+++||+||.+|.+.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999998 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA 304 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 304 (600)
||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
++|+.++|+++|++|.. +++||..||+.+|.+|++.|.++.+.+++..+.+. |+.++..++++|+++|.++|++++|.
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHH
Confidence 99999999999999986 69999999999999999999999999999999885 89999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCC
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMR-KRNV 461 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~ 461 (600)
++|+++ .||..+|++|+.+|.++|+.++|.++|++|.+ ..|+. .+|..++.+|++.|++++|.++|+.|. +.|+
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 999998 79999999999999999999999999999987 45665 899999999999999999999999999 6787
Q ss_pred ccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHH-HHH
Q 007517 462 IKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSLRYHSEKLA-VAY 540 (600)
Q Consensus 462 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~e~la-~~~ 540 (600)
.|+... ..+..|.. .+ .+.++++.+.+++++..||...|..-+..+...+.+ .-.|+.+ ..+
T Consensus 622 ~P~~~~----------y~~lv~~l--~r----~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~ 684 (857)
T PLN03077 622 TPNLKH----------YACVVDLL--GR----AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV-ELGELAAQHIF 684 (857)
T ss_pred CCchHH----------HHHHHHHH--Hh----CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Confidence 654421 00010100 00 012456667777788999988774444333221111 1112222 233
Q ss_pred hhcCCCCCCcEEEEccccccccchhhHHHHhhhhCceEEE-------ecCCcccccCCCccC
Q 007517 541 GLVKLPEGVPIRVMKNLRVCGDCHSAIKLISKVMGREIIL-------RDANRFHHFKDGLCS 595 (600)
Q Consensus 541 ~~~~~~~~~~~~~~~~l~~c~~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 595 (600)
.+.+...+..+.+..-....|+-.++.+....|..+.+-. --.+..|-|..|--|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 4555544444444444567899999999998887773221 113567888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.6e-63 Score=542.86 Aligned_cols=460 Identities=15% Similarity=0.236 Sum_probs=426.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC----CCCcchHHHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP----EKDVVAQTNMVLGYC 79 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~ 79 (600)
|+...++.++.+|.+.|.+++|+++|+.|..||..+|+.++.+|++.|++++|.++|+.|. .||..+|++||.+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~ 483 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA 483 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555677788889999999999999999999999999999999999999999999999997 589999999999999
Q ss_pred hcCChHHHHHHHhhCC----CCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHH
Q 007517 80 QDGRVDEGREIFDEMP----KKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
+.|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+ ||..||+.++.+|++.|++++|.+
T Consensus 484 k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~ 563 (1060)
T PLN03218 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998 48999999999999999999999999999976 999999999999999999999999
Q ss_pred HHhhCC------CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 007517 152 LFKAMP------MKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 152 ~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 221 (600)
+|++|. .+|..+|++||.+|+++|++++|.++|++|.+. +..+||.+|.+|++.|++++|+++|++|.+.
T Consensus 564 lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 999995 578899999999999999999999999999854 6799999999999999999999999999999
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC----CCCHHHHH
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA----SKDIVMWN 297 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~ 297 (600)
|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++||.+|+++|++++|.++|++|. .||+++||
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN 723 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999995 58999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh--
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG-- 375 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-- 375 (600)
+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.||..+|++++.++.
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~ 802 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRR 802 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999885 89999999999998743
Q ss_pred --hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCC
Q 007517 376 --RAG-------------------QVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKNA 430 (600)
Q Consensus 376 --~~g-------------------~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~ 430 (600)
+++ ..++|..+|++| ++.||..+|+.++.++...+..+.+..+++.+.. -.+.+.
T Consensus 803 y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 803 FEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred HHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 332 246799999999 8999999999999888888888888888877653 344556
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCc
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
.+|..|++.+.+. .++|..++++|.+.|+.++..
T Consensus 883 ~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 883 SNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8899999988332 368999999999999986654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-61 Score=530.33 Aligned_cols=495 Identities=15% Similarity=0.206 Sum_probs=446.5
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCCCC-----CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPEK-----NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLG 77 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~ 77 (600)
.+|...|..++..|++.|++++|+++|+.|..+ +..+++.++..|.+.|.+++|.++|+.|..||..+|+.||.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 467788999999999999999999999999854 455677888999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHhhCCC----CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHH
Q 007517 78 YCQDGRVDEGREIFDEMPK----KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDA 149 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a 149 (600)
|++.|+++.|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+ ||..||+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999975 8999999999999999999999999999986 9999999999999999999999
Q ss_pred HHHHhhCC----CCCccchhHHHHHHHhcCCHHHHHHHHHhcc------cCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 150 WELFKAMP----MKSVVASNSMILGLGQNGEVQKARVVFDQMR------EKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 150 ~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.++|+.|. .||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999997 7899999999999999999999999999995 4699999999999999999999999999999
Q ss_pred HcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHH
Q 007517 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVM 295 (600)
Q Consensus 220 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 295 (600)
+.|+.|+..+|+.++.+|++.|++++|..+|..|.+.|+.||..+|++++++|++.|++++|.++|+.|.+ +|..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 79999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|++++.+|.
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 89999999999999999
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCCHHHHHHHHHHHhcc--CC
Q 007517 376 RAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRT-----------------------HMKLDLAEVAAKKLLQL--EP 427 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~-----------------------~g~~~~a~~~~~~~~~~--~p 427 (600)
+.|++++|.+++++| ++.||..+|++|++.|.+ .+..+.|..+|++|.+. .|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999 889999999999977643 12346799999999984 46
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHc
Q 007517 428 KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREA 507 (600)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 507 (600)
+ ..+|..++..+...+.++.+..+++.|...+..+..... ...++.+ + . + ....-.+++.|.+.
T Consensus 846 d-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y----~~Li~g~--~--~-~------~~~A~~l~~em~~~ 909 (1060)
T PLN03218 846 T-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL----STLVDGF--G--E-Y------DPRAFSLLEEAASL 909 (1060)
T ss_pred C-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh----HHHHHhh--c--c-C------hHHHHHHHHHHHHc
Confidence 5 488999988888888888888888887765543322211 1111111 1 1 1 12355788999999
Q ss_pred CcccCCC
Q 007517 508 GYCPDSS 514 (600)
Q Consensus 508 g~~p~~~ 514 (600)
|+.|+.+
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9999876
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-58 Score=498.33 Aligned_cols=477 Identities=21% Similarity=0.302 Sum_probs=413.3
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHhhcCC-----CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHH
Q 007517 97 KNVISWTTMISGYVNNNRIDVARKLFEVMPE-----KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSM 167 (600)
Q Consensus 97 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l 167 (600)
++..+|+.+|.+|.+.|++++|+++|+.|.. ||..||+.++.+|++.++++.|.++|..+. .+|..++|+|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 5778999999999999999999999999975 789999999999999999999999999997 7899999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..||+.++.+|++.|++++|.+++..|.+. |++|+..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+|.
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHH
Confidence 999999999999999999999999999986 899999999999999999999999999999997 689999999999999
Q ss_pred HcCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCCceeEEEeCCEEEEEEcCCC
Q 007517 408 THMKLDLAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK-RNVIKPPGCSWIEVEKKVHMFTGRDC 484 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~~~~~~~s~~~~~~~~~~f~~~~~ 484 (600)
++|+.++|..+|++|.+ ..|+. .+|..++.+|.+.|++++|.++|+.|.+ .|+.++... + ... +.+..
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~-y---~~l----i~~l~ 473 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-Y---ACM----IELLG 473 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc-h---HhH----HHHHH
Confidence 99999999999999987 45655 8999999999999999999999999985 577654321 1 000 11101
Q ss_pred CCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhh---hhhhHHHHHHHhhcCCCCCCcEEEEccccccc
Q 007517 485 VSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEKVHSL---RYHSEKLAVAYGLVKLPEGVPIRVMKNLRVCG 561 (600)
Q Consensus 485 ~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~~l~~c~ 561 (600)
. .+. ++++.+.+++.++.|+...|..-+..+.+.+.+ ....++ .+++.+...+..+.+++-+..+|
T Consensus 474 r-~G~-------~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~---l~~~~p~~~~~y~~L~~~y~~~G 542 (697)
T PLN03081 474 R-EGL-------LDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEK---LYGMGPEKLNNYVVLLNLYNSSG 542 (697)
T ss_pred h-cCC-------HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH---HhCCCCCCCcchHHHHHHHHhCC
Confidence 1 222 455566677889999988774433333322221 111222 24444443444556667788999
Q ss_pred cchhhHHHHhhhhCceEEE-------ecCCcccccCCCccC
Q 007517 562 DCHSAIKLISKVMGREIIL-------RDANRFHHFKDGLCS 595 (600)
Q Consensus 562 ~~~~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 595 (600)
+..+|.++..+|..+.+-. --.+..|.|-.|-.+
T Consensus 543 ~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 583 (697)
T PLN03081 543 RQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL 583 (697)
T ss_pred CHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence 9999999999999886532 223456777766443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-29 Score=282.68 Aligned_cols=449 Identities=12% Similarity=0.090 Sum_probs=321.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHH
Q 007517 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGY 78 (600)
Q Consensus 5 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 78 (600)
+...|..+...+...|++++|++.|+.+.. ........++..+.+.|++++|.++++.+. .++..+|..+...|
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 475 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 445677777788888888888888877662 233455666777778888888888887776 23566777777888
Q ss_pred HhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHH
Q 007517 79 CQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWEL 152 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~ 152 (600)
...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.. | +..++..+...+...|+.++|...
T Consensus 476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877643 3445666777777788888888888877766 3 445667777777778888888887
Q ss_pred HhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC
Q 007517 153 FKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 153 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 226 (600)
+..+. +.+...+..++..|.+.|++++|..+++++.. .+...|..+...|...|++++|+..|+++.+.. +.+
T Consensus 556 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 556 LEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 77775 44555666777778888888888888777753 256677777788888888888888887776643 234
Q ss_pred chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHH
Q 007517 227 FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGY 303 (600)
Q Consensus 227 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 303 (600)
...+..+...+...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|..+...+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 4556667777777788888888877777654 44566777777777778888888777777654 3556677777777
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
...|++++|++.|+++... .|+..++..+..++...|+.++|.+.++.+.+. .+.+...+..+...|.+.|++++|
T Consensus 714 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 7777788888877777764 355566666777777777777777777777664 245667777777777777777777
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 384 MKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 384 ~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+.|+++ .. +++...+..+...+...|+ .+|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+
T Consensus 790 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 790 IKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777776 22 3356667777777777777 667777777777777777777777777777777777777777777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=1.8e-28 Score=278.71 Aligned_cols=449 Identities=13% Similarity=0.085 Sum_probs=389.6
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLG 77 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~ 77 (600)
.+...|+.+...+.+.|++++|.+.|+++.. .+...+..+...+...|++++|.+.|+.+.+ .+...+..++..
T Consensus 361 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 440 (899)
T TIGR02917 361 DDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440 (899)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHH
Confidence 4567889999999999999999999998873 3556788888899999999999999998873 234566778889
Q ss_pred HHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHH
Q 007517 78 YCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
|.+.|++++|..+++++.. ++..+|+.+...+...|++++|.+.|+++.+ |+ ...+..+...+...|++++|.+
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998865 4667899999999999999999999999877 43 4567788888999999999999
Q ss_pred HHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 152 LFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 152 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
.++.+. +.+..++..+...|.+.|+.++|...|+++... +...+..++..|...|++++|+.+++++.... +.
T Consensus 521 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 599 (899)
T TIGR02917 521 RFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PD 599 (899)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CC
Confidence 999887 566778888999999999999999999998543 56678889999999999999999999998753 45
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISG 302 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 302 (600)
+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.. .+..+|..++..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 67788899999999999999999999998865 45677888999999999999999999988754 467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 382 (600)
+...|++++|.++++.+.+.+ +++...+..+...+...|++++|.+.|+.+... .|+..++..++.+|.+.|++++
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHH
Confidence 999999999999999998874 456667788888899999999999999998874 4666888889999999999999
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 383 AMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 383 A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|.+.++++ ..+.+...+..+...|...|+.++|...++++++..|+++..+..++.++...|+ .+|..+++++.+.
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 99999887 3234677888899999999999999999999999999999999999999999999 8899999988764
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3.1e-32 Score=219.14 Aligned_cols=106 Identities=66% Similarity=1.114 Sum_probs=96.5
Q ss_pred ceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHH
Q 007517 466 GCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFVLHDVDEEEK--------VHSLRYHSEKLA 537 (600)
Q Consensus 466 ~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~e~la 537 (600)
|+||+++ |.|++||.+ ||+. ++...+...||.|++..++|+++++++ +..+..||||||
T Consensus 2 ~~~w~~~----h~F~sgd~s-hp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRS-HPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCc-CccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHH
Confidence 6899876 999999999 9987 455667788999999999998887765 557799999999
Q ss_pred HHHhhcCCCCCCcEEEEccc-cccccchhhHHHHhhhhCceEEEecCCcccccC
Q 007517 538 VAYGLVKLPEGVPIRVMKNL-RVCGDCHSAIKLISKVMGREIILRDANRFHHFK 590 (600)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~l-~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 590 (600)
+||||+++ ||+||+ |+|+|||+++|+||++++|+|+|||.+|||||+
T Consensus 69 iafgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 99999998 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=5.8e-20 Score=210.52 Aligned_cols=445 Identities=13% Similarity=0.089 Sum_probs=248.0
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHhhCCC--CCc-ch----------------HHHHHHHHHcCCCHHHHHHHHccCCC
Q 007517 5 NVVSWTAMVRGYVEEGMITEAGTLFWQMPE--KNV-VS----------------WTVMLGGFIRDSRIDDARRLFDMMPE 65 (600)
Q Consensus 5 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~-~~----------------~~~ll~~~~~~g~~~~A~~~~~~m~~ 65 (600)
|+..+..++..+.+.|+.++|.+.+++..+ |+. .. ...+...+.+.|++++|.+.|+.+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~ 140 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFN 140 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc
Confidence 455677777777888888888888877762 222 11 12233456777888888888887764
Q ss_pred CCcchHH---HHH-HHHHhcCChHHHHHHHhhCCC--C-CcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcc------
Q 007517 66 KDVVAQT---NMV-LGYCQDGRVDEGREIFDEMPK--K-NVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEV------ 131 (600)
Q Consensus 66 ~~~~~~~---~li-~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~------ 131 (600)
.++.... ... ......|+.++|++.|+++.+ | +...+..+...+...|+.++|+..|+++.. +...
T Consensus 141 ~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~ 220 (1157)
T PRK11447 141 GAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQL 220 (1157)
T ss_pred CCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHH
Confidence 3222111 111 112234778888888877765 2 344667777777778888888887776643 1100
Q ss_pred ----------------hHH----------------------------------HHHHHHhcCCChHHHHHHHhhCC---C
Q 007517 132 ----------------SWT----------------------------------AMLMGYTQCGRIQDAWELFKAMP---M 158 (600)
Q Consensus 132 ----------------t~~----------------------------------~ll~~~~~~g~~~~a~~~~~~~~---~ 158 (600)
.+. ....++...|++++|...++++. +
T Consensus 221 ~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P 300 (1157)
T PRK11447 221 WYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP 300 (1157)
T ss_pred HHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 000 11223445566777777776665 3
Q ss_pred CCccchhHHHHHHHhcCCHHHHHHHHHhcccCCh-----hhHHHH------------HHHHHHcCChHHHHHHHHHHHHc
Q 007517 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREKDD-----ATWSGM------------IKVYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~ 221 (600)
.+..++..|...|.+.|+.++|+..|++..+.++ ..|..+ ...+.+.|++++|+..|++....
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555666666677777777777777766653211 112211 23455667777777777776664
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC---------
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD--------- 292 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------- 292 (600)
. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.++|..+++.+....
T Consensus 381 ~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 D-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 2233445555666666777777777777666643 222333333333332 123333333333322110
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-
Q 007517 293 ---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY- 367 (600)
Q Consensus 293 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~- 367 (600)
...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~ 533 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVY 533 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 011222333344455555555555555543 333 2233444445555555555555555544321 1111111
Q ss_pred -------------------------------------------HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007517 368 -------------------------------------------ACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLG 404 (600)
Q Consensus 368 -------------------------------------------~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 404 (600)
..+.+.+...|+.++|.++++.-| ++...+..+..
T Consensus 534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~ 611 (1157)
T PRK11447 534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLTLAD 611 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHH
Confidence 123344555566666666665332 34445566677
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+...|++++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 612 ~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 612 WAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 777778888888888887777777777777777777777888888777776654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=1e-19 Score=208.63 Aligned_cols=375 Identities=9% Similarity=0.011 Sum_probs=256.4
Q ss_pred HHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc---hH------------HHH
Q 007517 77 GYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV---SW------------TAM 136 (600)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~---t~------------~~l 136 (600)
.+...|++++|+..|++..+ .+..++..|...|.+.|++++|+..|++..+ |+.. .+ ...
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 34556777777777776543 2455666677777777777777777776655 4321 11 112
Q ss_pred HHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHH-------------
Q 007517 137 LMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSG------------- 197 (600)
Q Consensus 137 l~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~------------- 197 (600)
...+.+.|++++|...++++. +.+...+..+...|...|++++|++.|++..+. +...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHH
Confidence 334556677777777777666 344445556666777777777777777666532 2222322
Q ss_pred -----------------------------HHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHH
Q 007517 198 -----------------------------MIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 198 -----------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 333455667777777777777664 343 345556666777777888888
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC----CHH---------HHHHHHHHHHhcCChHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK----DIV---------MWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~ 314 (600)
..++.+.+.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+...|+.++|+.
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 8777777643 334444444555566677777887777776532 111 12234566778888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007517 315 VFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 393 (600)
+++. .+++...+..+...+...|+.++|...|+.+.+.. +.+...+..++.+|...|++++|.+.++.. ...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 8772 23444566677788899999999999999998742 446888999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHHh-CCC
Q 007517 394 P-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG------PYILLSNIYASQGRFHDVAELRKNMRK-RNV 461 (600)
Q Consensus 394 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~-~g~ 461 (600)
| +...+..+..++...|++++|..+++++++..|+++. .+..++.++...|++++|.+.++.... .|+
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 5 4566777888889999999999999999988765543 456678999999999999999988753 344
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=6.4e-21 Score=185.88 Aligned_cols=432 Identities=12% Similarity=0.116 Sum_probs=344.5
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCc---chHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCCh
Q 007517 11 AMVRGYVEEGMITEAGTLFWQMPEKNV---VSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRV 84 (600)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~ 84 (600)
.|..-..+.|++.+|.+--...-..|+ ...-.+-..+.+..+++....--.... .....+|..+.+.+-..|++
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 344444566777777664332222211 122222234445555554333222222 22446788899999999999
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchH-HHHHHHHhcCCChHHHHHHHhhCC-
Q 007517 85 DEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSW-TAMLMGYTQCGRIQDAWELFKAMP- 157 (600)
Q Consensus 85 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~- 157 (600)
++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ |+.+-. +.+....-..|++++|..-+.+.+
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 999999998876 3567899999999999999999999999888 665533 334444556799999999888887
Q ss_pred --CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHh
Q 007517 158 --MKSVVASNSMILGLGQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLI 231 (600)
Q Consensus 158 --~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 231 (600)
+.=..+|+.|...+-..|++..|+.-|++...-| ...|-.|...|...+.+++|+..|.+.... +|+ .+.+.
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~g 290 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHG 290 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhcc
Confidence 3334678999999999999999999999987654 457888899999999999999999888764 554 56778
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC
Q 007517 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL 308 (600)
Q Consensus 232 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 308 (600)
.+...|-..|.++.|+..+++.++.. +.-+..|+.|..++-..|++.+|...|.+... ....+.+.|...|...|.
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence 88888889999999999999999875 34467899999999999999999999998764 356788999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
+++|..+|....+ +.|.- ..++.|...+.+.|++++|...+++..+ ++|+ ...|+.+...|...|+.+.|.+.
T Consensus 370 ~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 370 IEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred chHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999887 46664 4788899999999999999999998875 6787 78999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 007517 387 IEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 387 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+.+. .+.|. ....+.|.+.|...|+..+|+..++.+++++|+.|.+|..++.+..--.+|.+=.
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9887 66775 5678999999999999999999999999999999999999998887777776633
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=1e-18 Score=188.13 Aligned_cols=411 Identities=11% Similarity=0.005 Sum_probs=278.3
Q ss_pred HHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChH
Q 007517 42 VMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 42 ~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 116 (600)
.....|.+.|++++|...|++.. .|+...|..+...|.+.|++++|+..+++..+ .+..+|..+..+|...|+++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 44556667777777777777765 45666677777777777777777777776554 24456777777777777777
Q ss_pred HHHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChh
Q 007517 117 VARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDA 193 (600)
Q Consensus 117 ~A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~ 193 (600)
+|+.-|..... .+......++..+........+...+..- +.+...+..+.+ |........+..-++...+.+..
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcccccccc
Confidence 77776654433 11111111111111111112222222111 222233332222 22222222222212221111111
Q ss_pred ---hHHHHHHHH---HHcCChHHHHHHHHHHHHcC-CccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 194 ---TWSGMIKVY---ERKGYELEVIDLFTLMQKEG-VRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 194 ---~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
.+..+...+ ...+++++|++.|++....+ ..|+ ...+..+...+...|++++|...+...++.. +.....+
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH
Confidence 111111111 23478999999999998765 2343 3456666677788999999999999998864 3346678
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYT 341 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 341 (600)
..+...|...|++++|...|+.... .+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHC
Confidence 8889999999999999999987654 46789999999999999999999999999875 454 45677777888999
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHHcCCH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA-------I-IWGSLLGACRTHMKL 412 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-------~-~~~~ll~~~~~~g~~ 412 (600)
|++++|...|+...+. .+.+...|+.+..+|...|++++|.+.|++. .+.|+. . .++..+..+...|++
T Consensus 447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999998874 2455888999999999999999999999986 333421 1 122222334456999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++|...++++++++|++...+..++.++...|++++|.+.+++..+.
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999988754
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=1e-19 Score=177.65 Aligned_cols=412 Identities=13% Similarity=0.144 Sum_probs=336.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCc-chHHH--HHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDV-VAQTN--MVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~--li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 113 (600)
...|..-..+.|++.+|.+--..+-..|. .+-+. +-..+.+..+.++...--....+ .-..+|..+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34455566678889888886555443222 22222 22455566666654443222222 23468999999999999
Q ss_pred ChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCCCCCc---cchhHHHHHHHhcCCHHHHHHHHHhc
Q 007517 114 RIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV---VASNSMILGLGQNGEVQKARVVFDQM 187 (600)
Q Consensus 114 ~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~~ 187 (600)
++++|+.+++.+.+ | ....|..+..++...|+.+.|.+.|.....-++ .+.+.+.+.....|++++|...+.+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999999988 4 467899999999999999999999998883333 34455667777899999999999887
Q ss_pred ccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchh
Q 007517 188 REK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVY 263 (600)
Q Consensus 188 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 263 (600)
.+- =.+.|+.|...+...|+.-.|+..|++.... .|+ ...|..+-..+...+.++.|...+.+..... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 653 3578999999999999999999999998763 555 3567888888888888999988888777654 44567
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACS 339 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 339 (600)
++..+...|...|.++-|...|++..+ | -...||.|..++-..|+..+|.+.|.+.... .|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 777888889999999999999998865 3 4579999999999999999999999999874 5664 47888999999
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 416 (600)
..|.+++|..+|....+- .|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+...|.
T Consensus 366 E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999988763 454 677899999999999999999999988 78887 568999999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+.+++..+|.-..++..|+.+|-.+|+..+|..-++...+.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988764
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=1.2e-17 Score=183.41 Aligned_cols=210 Identities=9% Similarity=0.011 Sum_probs=157.9
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++|...+....... |+......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+
T Consensus 493 ~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444443332 3333222334444578888888888876643 3445566677778888888888888888877
Q ss_pred CCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHH
Q 007517 322 SGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AII 398 (600)
Q Consensus 322 ~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~ 398 (600)
.. |+.. .+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|.+.+++. ...|+ ...
T Consensus 571 l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a 645 (987)
T PRK09782 571 RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNY 645 (987)
T ss_pred cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 53 4433 3333344555669999999999988763 577888999999999999999999999988 45564 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 78888889999999999999999999999999999999999999999999999999887643
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4e-19 Score=181.59 Aligned_cols=290 Identities=13% Similarity=0.130 Sum_probs=210.6
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC---chhHhhHHHHHhhhcch
Q 007517 170 GLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN---FPSLISVLSVCASLASL 243 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~ 243 (600)
.+...|++++|...|+++.+. +..+|..+...+...|++++|+..++.+...+..++ ..++..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 345566666666666666532 334566666666677777777777766665422111 13445556666666777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC--------HHHHHHHHHHHHhcCChHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD--------IVMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777666542 3455667777777777777777777777664321 12455677788889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007517 316 FHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-P 391 (600)
Q Consensus 316 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 391 (600)
|+++.+. .|+ ...+..+...+...|++++|.++++++.+. .|+ ...++.++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998875 344 446677778888899999999999998764 233 456788999999999999999999987 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 007517 392 FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS---QGRFHDVAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 392 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 466 (600)
..|+...+..+...+.+.|++++|..+++++++..|+++ .+..+...+.. .|+.+++..+++.|.++++.++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 567777778888999999999999999999999999874 55555555443 568999999999999999998887
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=2.7e-18 Score=175.48 Aligned_cols=284 Identities=13% Similarity=0.100 Sum_probs=193.7
Q ss_pred HHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCCC-CC------ccchhHHHHHHHhcCC
Q 007517 107 SGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMPM-KS------VVASNSMILGLGQNGE 176 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~g~ 176 (600)
..+...|++++|+..|.++.+ |+ ..++..+...+...|++++|..+++.+.. ++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344566777777777777766 43 23555666666666666666666665551 11 1223444555555555
Q ss_pred HHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHH
Q 007517 177 VQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253 (600)
Q Consensus 177 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 253 (600)
+++|..+|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 5555555555543 233445555555555555555555555554432111000
Q ss_pred HHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 254 VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 254 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
.....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++.+.+..+...+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 0012345567778888899999888888754 3466788888999999999999999999987532222456
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH-
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRT- 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~- 408 (600)
+..+..++...|++++|.+.++.+.+. .|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 788889999999999999999998874 477777789999999999999999999876 667999999988887764
Q ss_pred --cCCHHHHHHHHHHHhc
Q 007517 409 --HMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 409 --~g~~~~a~~~~~~~~~ 424 (600)
+|+.+++..+++++++
T Consensus 329 ~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVG 346 (389)
T ss_pred cCCccchhHHHHHHHHHH
Confidence 5688899999988886
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=6.9e-17 Score=174.05 Aligned_cols=411 Identities=12% Similarity=0.006 Sum_probs=294.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCC
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~ 83 (600)
+......+.+.|++++|+..|++.+ .|+...|..+..+|.+.|++++|.+.++...+ .+...|..+..+|...|+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4566778889999999999999977 57778899999999999999999999998873 345678888999999999
Q ss_pred hHHHHHHHhhCCCCC---cccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCC
Q 007517 84 VDEGREIFDEMPKKN---VISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKS 160 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 160 (600)
+++|..-|......+ ......++.-+........+...++.-. ++...+..+.. +...........-+......+
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 999998876543211 1111122221111111222333332221 22222222222 221111111111122222222
Q ss_pred ccchhHHHHHH------HhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-c
Q 007517 161 VVASNSMILGL------GQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-F 227 (600)
Q Consensus 161 ~~~~~~li~~~------~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 227 (600)
......++..+ ...+++++|.+.|++..+. +...|+.+...+...|++++|+..|++.... .|+ .
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 22222222222 2347899999999987642 4456888888999999999999999998875 454 4
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
.+|..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 577788888899999999999999998875 55678899999999999999999999998754 36778888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh--------HHHHHHHHHHh
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT--------EHYACMVDLLG 375 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~--------~~~~~li~~~~ 375 (600)
+.|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.|+..... .|+. ..++.....+.
T Consensus 445 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHH
Confidence 999999999999999874 454 567888888999999999999999998763 2321 11222233445
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 376 RAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..|++++|.+++++. .+.|+ ...+..+...+...|++++|...++++.++.+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 579999999999986 44564 5578899999999999999999999999987754
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.3e-16 Score=173.21 Aligned_cols=447 Identities=11% Similarity=0.048 Sum_probs=327.2
Q ss_pred CCcchHHHH-HHHHHhCCChHHHHHHHhhCCCC---CcchHHHHHHHHHc-CCCHHHHHHHHccCCCCCcchHHHHHHHH
Q 007517 4 RNVVSWTAM-VRGYVEEGMITEAGTLFWQMPEK---NVVSWTVMLGGFIR-DSRIDDARRLFDMMPEKDVVAQTNMVLGY 78 (600)
Q Consensus 4 p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 78 (600)
|+..+.... ...|.+.|++++|++++..+.+. +..-...|..+|.. .++ +.+..++....+.|+..+.++...|
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 344444444 88999999999999999988843 33345566677777 466 8888887765567888899999999
Q ss_pred HhcCChHHHHHHHhhCCC-----CCcccH------------------------------HHHHHHHHhCCChHHHHHHHh
Q 007517 79 CQDGRVDEGREIFDEMPK-----KNVISW------------------------------TTMISGYVNNNRIDVARKLFE 123 (600)
Q Consensus 79 ~~~g~~~~A~~~~~~m~~-----~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~~ 123 (600)
.+.|+.++|.+++++++. |...+| -.++..+.+.++++.+.++..
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999998863 211111 122455566666665555532
Q ss_pred hcCC-------------------------------C-CcchHHHHHHHHhcCCChHHHHHHHhhCCC--CCc----cchh
Q 007517 124 VMPE-------------------------------K-NEVSWTAMLMGYTQCGRIQDAWELFKAMPM--KSV----VASN 165 (600)
Q Consensus 124 ~m~~-------------------------------p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~ 165 (600)
--.. | +......+--.....|+.++|.+++....+ .+. ...+
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 1111 0 111111122224566888899999888873 222 2344
Q ss_pred HHHHHHHhcCC---HHHHHHH-------------------------HHhccc---C--ChhhHHHHHHHHHHcCChHHHH
Q 007517 166 SMILGLGQNGE---VQKARVV-------------------------FDQMRE---K--DDATWSGMIKVYERKGYELEVI 212 (600)
Q Consensus 166 ~li~~~~~~g~---~~~A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~ 212 (600)
-|+..|.+.+. ..+|..+ +..... . +...|..+..++.. +++++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 67788888876 3333222 111111 1 45567777777776 8999999
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+.+.|+.++|...|+.....+
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988887765 466655445555667899999999999987664 3444556677888999999999999998876643
Q ss_pred H---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHH
Q 007517 293 I---VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC 369 (600)
Q Consensus 293 ~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 369 (600)
. ..+..+.....+.|++++|+..|++..+. .|+...+..+..++.+.|+.++|...++...... +.+...++.
T Consensus 573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~n 648 (987)
T PRK09782 573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAA 648 (987)
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 2 22333333444569999999999999874 6788888889999999999999999999998742 445788899
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+...+...|++++|.+.+++. ...| +...+..+..++...|++++|+..++++++++|++.......++......+++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 999999999999999999987 4455 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
.+.+-+++--..+
T Consensus 729 ~a~~~~~r~~~~~ 741 (987)
T PRK09782 729 RLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhhcC
Confidence 9998877765544
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.5e-17 Score=174.92 Aligned_cols=322 Identities=11% Similarity=0.020 Sum_probs=234.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 175 (600)
.-.++..+.+.|++++|+.+++.... |+ ...+..++.+....|+++.|...++.+. +.+...+..+...+.+.|
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 33455566777777777777777665 43 3344555555666777777777777776 455566677777778888
Q ss_pred CHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
+.++|...|++... | +...|..+...+...|++++|...++.+.... |+.......+..+...|++++|...+..
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888877764 2 45677777888888888888888888776543 3322222223346677888888888887
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCC
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK----SLKVFHEMFSSGVM 325 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~ 325 (600)
+.+....++......+...+.+.|+.++|...|+.... .+...+..+...|.+.|++++ |+..|++..+. .
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~ 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--N 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--C
Confidence 77664334444455566778888888888888887654 366778888888899998885 78999998874 4
Q ss_pred CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHH
Q 007517 326 PD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIW-GSL 402 (600)
Q Consensus 326 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~l 402 (600)
|+ ...+..+...+...|++++|...++...+.. +.+...+..+..+|.+.|++++|.+.++++ ...|+...+ ..+
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 55 4577788888899999999999999888742 334667778889999999999999999887 345665443 345
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..++...|+.++|...++++++..|++
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 667888999999999999999998886
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=5.5e-17 Score=177.97 Aligned_cols=384 Identities=9% Similarity=0.033 Sum_probs=222.6
Q ss_pred HHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChH
Q 007517 43 MLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 43 ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 116 (600)
.+....-.|+.++|.+++..... .+...+..+...+.+.|++++|..+|++..+ .+...+..+...+...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34445556666666666665542 1222355566666666666666666666332 23445555666666666666
Q ss_pred HHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCC
Q 007517 117 VARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREKD 191 (600)
Q Consensus 117 ~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~ 191 (600)
+|+..+++..+ |+...+..+..++...|+.++|...++++. +.+..++..+...+.+.|..++|.+.++.... +
T Consensus 101 eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~ 179 (765)
T PRK10049 101 EALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-T 179 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence 66666666655 332225555556666666666666666665 33444455556666666666666666665554 1
Q ss_pred hh--------hHHHHHHHHH-----HcCCh---HHHHHHHHHHHHc-CCccCch-hHhh----HHHHHhhhcchHHHHHH
Q 007517 192 DA--------TWSGMIKVYE-----RKGYE---LEVIDLFTLMQKE-GVRVNFP-SLIS----VLSVCASLASLDHGRQV 249 (600)
Q Consensus 192 ~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~~~~~~~~~~~a~~~ 249 (600)
+. ....++.... ..+++ ++|++.++.+.+. ...|+.. .+.. .+.++...|+.++|+..
T Consensus 180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11 1111222221 12223 6677777777653 2223221 1111 13344556777778888
Q ss_pred HHHHHHcCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 250 HAQLVRCQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFASKD-------IVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 250 ~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++.+.+.+.+ |+ .....+...|...|++++|...|+++...+ ...+..+..++.+.|++++|+.+++++..
T Consensus 260 ~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 8777776522 22 122224667777788888888777764321 23455556677778888888888887775
Q ss_pred CC-----------CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 322 SG-----------VMPDD---VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 322 ~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
.. -.|+. ..+..+...+...|++++|.+.++++... .+.+...+..+..++...|++++|++.+
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 41 11231 12334445666677777777777777654 2445666777777777777777777777
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 388 EAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 388 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
++. ...|+ ...+..+...+...|++++|+.+++++++..|+++
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 766 44454 44555555666677777777777777777777774
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=4.5e-17 Score=178.66 Aligned_cols=382 Identities=9% Similarity=0.034 Sum_probs=292.4
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCC
Q 007517 72 TNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGR 145 (600)
Q Consensus 72 ~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~ 145 (600)
.-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++..+ |+ ...+..+..++...|+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 4456677889999999999998764 3344589999999999999999999999766 54 4566778888999999
Q ss_pred hHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 146 IQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 146 ~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.++|...++.+. +.+.. +..+...+...|+.++|...++++.+. +...+..+...+...|..++|+..++...
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 999999999987 55566 888899999999999999999998753 55667778888899999999999887655
Q ss_pred HcCCccCch------hHhhHHHHH-----hhhcch---HHHHHHHHHHHHc-CCCCchh-h-HHH---HHHHHHHcCCHH
Q 007517 220 KEGVRVNFP------SLISVLSVC-----ASLASL---DHGRQVHAQLVRC-QFDVDVY-V-ASV---LITMYIKCGELV 279 (600)
Q Consensus 220 ~~g~~p~~~------t~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~~~---li~~y~~~g~~~ 279 (600)
. .|+.. .....+... ...+++ +.|...++.+.+. ...|+.. . ..+ .+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 3 23310 111111111 122233 6677788887764 2223221 1 111 123445779999
Q ss_pred HHHhhhhhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHHHHH
Q 007517 280 KGKLIFDNFASKD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-----DVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 280 ~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
+|...|+.+...+ ...-..+...|...|++++|+..|+++.+.. |. ......+..++...|++++|.++
T Consensus 255 eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999987632 1122225778999999999999999987643 32 23455666688999999999999
Q ss_pred HHHhHhcCC----------CCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007517 351 FESMKSKYL----------VEPK---TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 351 ~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 415 (600)
++.+..... -.|+ ...+..+..++...|++++|+++++++ ...| +...+..+...+...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999886421 0122 235567888999999999999999997 3344 577899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..++++++++|+++..+..++..+...|++++|.++++.+.+.
T Consensus 413 ~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 413 ENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999864
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=2.3e-16 Score=169.52 Aligned_cols=324 Identities=10% Similarity=-0.001 Sum_probs=265.9
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHH
Q 007517 129 NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVY 202 (600)
Q Consensus 129 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~ 202 (600)
+..-...++..+.+.|+.+.|..+++... +.+......++......|++++|...|+++... +...|..+...+
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44456667788899999999999999887 555666777778888899999999999999753 567788899999
Q ss_pred HHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHH
Q 007517 203 ERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKG 281 (600)
Q Consensus 203 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 281 (600)
.+.|++++|++.|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 454 5567778888999999999999999887765333 3333333 347889999999
Q ss_pred HhhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHH
Q 007517 282 KLIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE----GREIFES 353 (600)
Q Consensus 282 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~ 353 (600)
...++.+... +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999987542 33445556778899999999999999999753 3345567778888999999986 8999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
..+.. +.+...+..+..+|.+.|++++|...+++. ...|+ ...+..+..++...|++++|...++++.+.+|+++.
T Consensus 276 Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 276 ALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 88742 445788999999999999999999999988 44554 567888889999999999999999999999999876
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+..++.++...|++++|.+.+++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6777889999999999999999998765
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.3e-15 Score=164.01 Aligned_cols=414 Identities=10% Similarity=0.036 Sum_probs=287.8
Q ss_pred HHHhCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHH---HHHHHhcCChHHHH
Q 007517 15 GYVEEGMITEAGTLFWQMPEKNVV---SWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNM---VLGYCQDGRVDEGR 88 (600)
Q Consensus 15 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~~g~~~~A~ 88 (600)
...+.|+++.|+..|++....++. ....++..+...|+.++|+..+++...|+...+..+ ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 356888999999999888843332 123777888888999999999998886654444433 34677779999999
Q ss_pred HHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCC
Q 007517 89 EIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKS 160 (600)
Q Consensus 89 ~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~ 160 (600)
++|+++.+ .|...+..++..+...++.++|++.++++.. |+...+..++..+...++..+|.+.++++. +.+
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99998875 2445666777888888999999999988887 665555444444444556656888888887 556
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhcccC-ChhhHHH----HHHHHH---------HcCC---hHHHHHHHHHHHHc-C
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMREK-DDATWSG----MIKVYE---------RKGY---ELEVIDLFTLMQKE-G 222 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~----li~~~~---------~~g~---~~~A~~~~~~m~~~-g 222 (600)
...+..++....+.|-...|.++..+-+.- +...+.- .+.-.+ ...+ .+.|+.-++.+... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 677778888888888888888888776531 1111100 011111 1122 24455555555542 2
Q ss_pred CccCchh-H----hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC------
Q 007517 223 VRVNFPS-L----ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK------ 291 (600)
Q Consensus 223 ~~p~~~t-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 291 (600)
..|.... | .--+-++...++..+++..++.+...+.+....+-.++.++|...++.++|..+|..+...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232221 2 2345567778888888888888888887666678888888888888999998888876431
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCC--HHH-HHHHHHHHhccCCHHHHHHHHHHh
Q 007517 292 ---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-----------MPD--DVT-LVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 292 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~t-~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
+......|.-+|...+++++|..+++++.+.-. .|| -.. +..+...+...|++.+|++.++.+
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233356778888888888899888888876311 122 222 333455677788888888888888
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
... -+-|......+.+++...|.+.+|++.++.. .+.|+ ..+...+..+....|++.+|..+.+.+.+..|+++
T Consensus 443 ~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 443 SST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 764 3557888888888888888888888888766 44554 45566677777788888888888888888888885
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.8e-15 Score=162.98 Aligned_cols=408 Identities=12% Similarity=0.049 Sum_probs=304.4
Q ss_pred HHHcCCCHHHHHHHHccCCCCCcch---HHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHH-H--HHHHHhCCChHHHH
Q 007517 46 GFIRDSRIDDARRLFDMMPEKDVVA---QTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTT-M--ISGYVNNNRIDVAR 119 (600)
Q Consensus 46 ~~~~~g~~~~A~~~~~~m~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-l--i~~~~~~g~~~~A~ 119 (600)
...+.|+++.|+..|++..+.++.. ...++..+...|+.++|+..+++...|+...+.. + ...|...|++++|+
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4668999999999999998544332 3388889999999999999999998765444433 3 45778889999999
Q ss_pred HHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCCCCCc--cchhHHHHHHHhcCCHHHHHHHHHhcccC---C
Q 007517 120 KLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSV--VASNSMILGLGQNGEVQKARVVFDQMREK---D 191 (600)
Q Consensus 120 ~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~ 191 (600)
++|+++.+ |+ ...+..++..+...++.++|.+.++.+.+.++ ..+..++..+...++..+|++.++++.+. +
T Consensus 123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 99999988 54 45667778889999999999999999994443 33434444444466666699999999753 5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhh-----------HHHHH-----hhhcch---HHHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLIS-----------VLSVC-----ASLASL---DHGRQVHAQ 252 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----------ll~~~-----~~~~~~---~~a~~~~~~ 252 (600)
...+..+..+..+.|-...|+++..+- |+.++=.. .+..- ....++ +.|..-++.
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 667788889999999999998776542 32222111 11000 011222 334444444
Q ss_pred HHHc-C-CCCchhh-HHH---HHHHHHHcCCHHHHHhhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007517 253 LVRC-Q-FDVDVYV-ASV---LITMYIKCGELVKGKLIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS 322 (600)
Q Consensus 253 ~~~~-~-~~~~~~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 322 (600)
+... + .++.... ..+ .+-++.+.|++.++.+.|+.+... ...+--++.++|...+++++|+.+|++....
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 4432 1 1222222 223 344567889999999999999853 3456677899999999999999999999764
Q ss_pred C-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC----------CCCC---hHHHHHHHHHHhhcCCHHHHH
Q 007517 323 G-----VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL----------VEPK---TEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 323 g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~ 384 (600)
. ..++......|..|+...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 122333356788999999999999999999987321 0122 344566788899999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 385 KLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 385 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.++++ ...| |...+..+...+...|.+.+|+..++.+..++|++..+....+.++...|+|++|.++.+...+.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999998 3344 78889999999999999999999999999999999999999999999999999999998877654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=6e-14 Score=144.93 Aligned_cols=437 Identities=11% Similarity=0.091 Sum_probs=320.7
Q ss_pred HhCCChHHHHHHHhhCC------CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHH------hcCCh
Q 007517 17 VEEGMITEAGTLFWQMP------EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYC------QDGRV 84 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~------~~g~~ 84 (600)
...+++..|+.+|...+ .+|+.+.. ...+.++|+.+.|+..|.+..+-|+..-++++.... ....+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHH
Confidence 35688999999999865 34554432 356678999999999999998776666565554322 12345
Q ss_pred HHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC------CCcchHHHHHHHHhcCCChHHHHHHHhh
Q 007517 85 DEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE------KNEVSWTAMLMGYTQCGRIQDAWELFKA 155 (600)
Q Consensus 85 ~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 155 (600)
..+..++...-. .|+++.+.|.+-|.-.|++..++.+...+.. .-...|-.+.+++-..|++++|...|.+
T Consensus 253 ~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 556666655432 5888999999999999999999999888876 1234688899999999999999999988
Q ss_pred CC--CCC--ccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCc
Q 007517 156 MP--MKS--VVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKG----YELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 156 ~~--~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~ 224 (600)
.. .++ +..+-.|..+|.+.|+++.|...|+.+... +..+...+...|+..+ ..++|..++.+....- +
T Consensus 333 s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 333 SLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 87 333 344557899999999999999999998753 5667777778888775 3455666655554432 3
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHH----HHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-------CH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQL----VRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-------DI 293 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~ 293 (600)
.|...|..+...+.. ++......++..+ ...+-.+.+.+.|.+...+...|+++.|...|...... |.
T Consensus 412 ~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 345555555554433 3444445555443 34555688899999999999999999999999876432 22
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH
Q 007517 294 ------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH 366 (600)
Q Consensus 294 ------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~ 366 (600)
.+-..+...+-..++.+.|.+.|....+. .|.-++ |..++......+...+|...+...... ...++..
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~a 566 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNA 566 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHH
Confidence 22333455566678999999999999885 677653 444443333457888999999888763 3566777
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHhccCCCCC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRT------------HMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
++-+.+.+.+...+.-|.+-|+.. ...+|..+.-+|.+.|.+ .+..++|+++|.+++..+|.|.
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~ 646 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNM 646 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 888888898888888888855444 334788888888876653 3456889999999999999998
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.+-..++-+++..|++.+|..+|.+..+...
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 7778899999999999999999999998754
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=2.8e-14 Score=147.35 Aligned_cols=414 Identities=10% Similarity=0.098 Sum_probs=276.0
Q ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHccCCCCC------cchHHHHHHHHHhcCChHHHHHHHhhCCC--CC--cccHHH
Q 007517 35 KNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKD------VVAQTNMVLGYCQDGRVDEGREIFDEMPK--KN--VISWTT 104 (600)
Q Consensus 35 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~~ 104 (600)
.++.+.+.|.+.|.-.|++..+..+...+...+ ..+|-.+..+|-..|++++|...|-+..+ +| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 456666666666666777777766666665322 22355566677777777777777766544 22 233445
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhcCC----ChHHHHHHHhhCC---CCCccchhHHHHHHHhc
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQCG----RIQDAWELFKAMP---MKSVVASNSMILGLGQN 174 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~~g----~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~ 174 (600)
|...|.+.|+.+.+...|+...+ ||. .|...+...|+..+ ..+.|..+..... +.|...|-.+..+|-..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 66677777777777777777666 543 35555555555553 4455666666555 33444455555554443
Q ss_pred CCHHHHHHHHHhcc--------cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCccCch-----h-HhhHHHHH
Q 007517 175 GEVQKARVVFDQMR--------EKDDATWSGMIKVYERKGYELEVIDLFTLMQKE---GVRVNFP-----S-LISVLSVC 237 (600)
Q Consensus 175 g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~-----t-~~~ll~~~ 237 (600)
.-+ .++.+|.... ..-+...|.+...+...|.+++|...|...... -..+|.. | --.+....
T Consensus 428 d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred ChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 322 2233332221 235667788888888888888888888877654 2233331 1 22233344
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc-------CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcC
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC-------GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYG 307 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 307 (600)
-..++.+.|.+++..+.+.. | ..|++|.+. ++..+|...+..... .|+..|+.+...|....
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhh
Confidence 55678888888888888753 1 244455444 566677777776543 57788888888888888
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSY------------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
.+..|.+-|+...+.- ..+|.++..+|-..|.. .+..+.|.++|.++.+.. +.|...-|-+.-.+
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAANGIgiVL 656 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAANGIGIVL 656 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhccchhhhh
Confidence 8888888777665532 34677777666665532 245678888888887642 45677888889999
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCCchHHH
Q 007517 375 GRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+..|++.+|..+|.+. ....+..+|-.+..+|...|++..|.++|+..++. ..+++.....|+.++...|++.+|.
T Consensus 657 A~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 657 AEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999999988 22335678999999999999999999999998873 3445667788999999999999999
Q ss_pred HHHHHHHhC
Q 007517 451 ELRKNMRKR 459 (600)
Q Consensus 451 ~~~~~m~~~ 459 (600)
+........
T Consensus 737 ~~ll~a~~~ 745 (1018)
T KOG2002|consen 737 EALLKARHL 745 (1018)
T ss_pred HHHHHHHHh
Confidence 988877654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=1.6e-14 Score=136.72 Aligned_cols=433 Identities=13% Similarity=0.116 Sum_probs=295.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCCC----CCc-chHHHHHHHHHcCCCHHHHHHHHccCCC--C------CcchHHHHH
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMPE----KNV-VSWTVMLGGFIRDSRIDDARRLFDMMPE--K------DVVAQTNMV 75 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~------~~~~~~~li 75 (600)
...|.+.|..+....+|+..|+-+.. |+. ..--.+...+.+...+..|++.|+.... | .+...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 34466777778888899998887763 222 1222334556777888889888766542 2 123445555
Q ss_pred HHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----------------CCcchHHHHH
Q 007517 76 LGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE----------------KNEVSWTAML 137 (600)
Q Consensus 76 ~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------------p~~~t~~~ll 137 (600)
..+.+.|.+++|+..|+...+ ||..+--.|+-++.--|+.++..+.|..|.. |+....+..+
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998764 7776655555566677888888888888865 2333333222
Q ss_pred H-----HHhcCC--ChHHHHHHHhhCC----CCCccc-------------hh--------HHHHHHHhcCCHHHHHHHHH
Q 007517 138 M-----GYTQCG--RIQDAWELFKAMP----MKSVVA-------------SN--------SMILGLGQNGEVQKARVVFD 185 (600)
Q Consensus 138 ~-----~~~~~g--~~~~a~~~~~~~~----~~~~~~-------------~~--------~li~~~~~~g~~~~A~~~f~ 185 (600)
. -.-+.+ +.+++.-.-..++ .++... +. .-..-|.+.|+++.|.+++.
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2 122111 1222222222222 222110 11 11235788999999998888
Q ss_pred hcccCChhhHH----HHHH-HHHHc-CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 007517 186 QMREKDDATWS----GMIK-VYERK-GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 186 ~~~~~~~~~~~----~li~-~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (600)
-...+|..+-. .|-. -|.+- .++..|..+-....... +-+....+.--+.....|++++|...+.+.....-.
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 77766544322 2222 22333 34555555544443321 122222222223344578999999999999876544
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.....|| +.-.+-+.|++++|+..|-++.. .++...-.+...|-...++.+|++++.+.... ++.|...+.-|..
T Consensus 523 c~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 3344444 33457788999999999977643 57777777888899999999999999877653 4455667888889
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGAC-RTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~ 414 (600)
.|-+.|+-.+|.+.+-.--+ -++.+.++...|...|....-+++|...|++. -+.|+..-|..++..| ++.|++.+
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999998765443 25678999999999999999999999999998 5789999999998776 56799999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRF 446 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 446 (600)
|..+++......|.+....-.|..++...|.-
T Consensus 679 a~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99999999999999989999999999888853
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=4.5e-15 Score=143.77 Aligned_cols=256 Identities=13% Similarity=0.136 Sum_probs=113.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHH-HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVL-SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
+...+.+.|++++|++++++......+|+...|-.++ ..+...++.+.|...++.+...+. .++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3556677788888888776554443245555554433 344556778888888888877653 356667777777 6889
Q ss_pred CHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 277 ELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 277 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++++|.+++...-+ ++...+..++..+.+.++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876643 566778888889999999999999999987643 345666777788888999999999999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
..+.. +.+......++..+...|+.+++.++++.. ..+.|+..|..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 98752 335888999999999999999988888766 22346678899999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
....++.++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.58 E-value=4e-11 Score=119.04 Aligned_cols=447 Identities=13% Similarity=0.099 Sum_probs=321.4
Q ss_pred HhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhh
Q 007517 17 VEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDE 93 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 93 (600)
+.-...+.|..++.+..+--+ +..-|.-+|++..-++.|+.++.+.. ..+...|.+-...--.+|+.+...++.++
T Consensus 387 VelE~~~darilL~rAveccp-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVECCP-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred HhccChHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 345566667777776652111 11223344556666777777776655 34666666655555666666666665554
Q ss_pred CCC------------------------CC---------------------cccHHHHHHHHHhCCChHHHHHHHhhcCC-
Q 007517 94 MPK------------------------KN---------------------VISWTTMISGYVNNNRIDVARKLFEVMPE- 127 (600)
Q Consensus 94 m~~------------------------~~---------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 127 (600)
-.. .. -.+|+.-...|.+.+.++-|..+|....+
T Consensus 466 gl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv 545 (913)
T KOG0495|consen 466 GLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV 545 (913)
T ss_pred HHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh
Confidence 220 11 12455555566666667777777776666
Q ss_pred -C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHH
Q 007517 128 -K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMI 199 (600)
Q Consensus 128 -p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li 199 (600)
| +...|......--..|..+.-..++++++ +.....|-.....+...|++..|+.++.+..+. +...|-+-+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3 34455555555556677787778887777 555566777777778888888888888777642 566788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
..-..+..+++|..+|.+... ..|+...|.--+..--.++..++|.++++..++.- +.-...|-.+.+.|-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHH
Confidence 888888889999988888766 45666666666666666788888888888888763 444567778888888888899
Q ss_pred HHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 280 KGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 280 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|...|..-.. | .+..|-.|...=-+.|+.-+|..+|++.+-.+ +-|...|...|..=.+.|+.++|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888876654 3 45678777777777888889999998887664 44566788888888889999999988888877
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 357 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
+ .+.+-..|..-|.+..+.++-..+...+++. +.|+...-++...+.....++.|...|++++..+|++..++..+
T Consensus 782 e--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 782 E--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred h--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 5 3566778888888888888877777777665 34666666777778888899999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEK 474 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~ 474 (600)
...+...|.-++-.++++..... .|.-|..|+.+..
T Consensus 858 ykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999999999877654 3556667765543
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=9.8e-13 Score=124.70 Aligned_cols=449 Identities=11% Similarity=0.118 Sum_probs=291.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCcc-----hHHHHHHHHHhcCChHHHHHHHhhCCC--CC------cccHHHHH
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDVV-----AQTNMVLGYCQDGRVDEGREIFDEMPK--KN------VISWTTMI 106 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~--~~------~~~~~~li 106 (600)
...|.+-|.......+|+..|+-+.+...+ .-..+.+.+.+...+.+|++.++-... |+ +...|.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677777788999888877643222 222345667888899999998875543 22 23455566
Q ss_pred HHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCc--------cchhHHHHHHH
Q 007517 107 SGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSV--------VASNSMILGLG 172 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~--------~~~~~li~~~~ 172 (600)
-.+.+.|+++.|+..|+...+ ||..+-..|+-++..-|+-++.++.|..++ .+|. ..-..|++--.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 678899999999999998766 988877777777778899999999999887 1111 11122332222
Q ss_pred h---------cCC--HHHHH----HHHHhcccCChh---hHH------------------HHHHHHHHcCChHHHHHHHH
Q 007517 173 Q---------NGE--VQKAR----VVFDQMREKDDA---TWS------------------GMIKVYERKGYELEVIDLFT 216 (600)
Q Consensus 173 ~---------~g~--~~~A~----~~f~~~~~~~~~---~~~------------------~li~~~~~~g~~~~A~~~~~ 216 (600)
+ .++ .++++ ++..-...+|-. -|. .-...|.++|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 2 221 11221 111111122210 011 11235789999999999999
Q ss_pred HHHHcCCccCchhHhhH--HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHH
Q 007517 217 LMQKEGVRVNFPSLISV--LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIV 294 (600)
Q Consensus 217 ~m~~~g~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 294 (600)
-+.+..-+.-...-+.+ +.-.-.-.++..|.++-...+... ..+....+.-.+.-...|++++|.+.|.+....|..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 88776433332222222 222222335666666665554332 122222222223334579999999999999888776
Q ss_pred HHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 295 MWNSII---SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 295 ~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
.-.+|. -.+-..|+.++|++.|-++..- +.-+...+..+...|....+..+|.+++.+... -++.|+.+.+-|.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~ 599 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHH
Confidence 554443 3467789999999999887542 344556777788888888999999999987765 4677899999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
+.|-+.|+-.+|.+..-.- .. +-+..+..-|..-|....-.+++..+|+++.-+.|+-...-..++.++.+.|++..|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999999875443 32 335556555666677777789999999999999998866666677778899999999
Q ss_pred HHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHH
Q 007517 450 AELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKI 500 (600)
Q Consensus 450 ~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 500 (600)
..+++...++ ++.+..|.-.. .-++||.. -...++...+|+++
T Consensus 680 ~d~yk~~hrk-fpedldclkfl------vri~~dlg-l~d~key~~klek~ 722 (840)
T KOG2003|consen 680 FDLYKDIHRK-FPEDLDCLKFL------VRIAGDLG-LKDAKEYADKLEKA 722 (840)
T ss_pred HHHHHHHHHh-CccchHHHHHH------HHHhcccc-chhHHHHHHHHHHH
Confidence 9999988754 33333331100 01345544 45555665556444
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=4.1e-11 Score=114.63 Aligned_cols=444 Identities=12% Similarity=0.157 Sum_probs=328.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhc
Q 007517 8 SWTAMVRGYVEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQD 81 (600)
Q Consensus 8 ~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 81 (600)
.|-...+.=-..+++..|..+|++.+. .+...|-..+.+=.++..+..|+.++++.. ++=...|-..+.+--..
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 444444445567788899999999884 456678888888889999999999999876 23335566666677778
Q ss_pred CChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC
Q 007517 82 GRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 82 g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
|++..|+++|++-.+ |+..+|++.|+.=.+....+.|..++++..- |+..+|.-....-.+.|....+.++|+.++
T Consensus 155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999999998654 9999999999999999999999999999877 999999999998899999999999999887
Q ss_pred ------CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHH--------HHHH
Q 007517 158 ------MKSVVASNSMILGLGQNGEVQKARVVFDQMREK-----DDATWSGMIKVYERKGYELEVIDL--------FTLM 218 (600)
Q Consensus 158 ------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~--------~~~m 218 (600)
..+...+.++...=.++..++.|.-+|.-..+. ....|.....---+.|+.....+. |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 223345556666666788888898888655431 234455555555556665443332 2333
Q ss_pred HHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCch--hhHHHHHHH--------HHHcCCHHHHHhhhhhc
Q 007517 219 QKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDV--YVASVLITM--------YIKCGELVKGKLIFDNF 288 (600)
Q Consensus 219 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------y~~~g~~~~A~~~~~~~ 288 (600)
...+ +-|-.++--.+..-...|+.+..+++++.++..- +|-. ..+.-.|-. =....+++.+.++|+..
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3332 4466677777777788899999999999988754 3321 112222211 12467888888888765
Q ss_pred CC---CCHHHHHHHHH----HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC
Q 007517 289 AS---KDIVMWNSIIS----GYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVE 361 (600)
Q Consensus 289 ~~---~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 361 (600)
.+ ....|+.-+-- --.++.+...|.+++...+ |.-|-..+|...|..=.+.+.++..+.+++...+- + +
T Consensus 393 l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~-P 468 (677)
T KOG1915|consen 393 LDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-S-P 468 (677)
T ss_pred HhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-h
Confidence 43 33344444433 3446788999999998876 67899999999999989999999999999998873 2 4
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
.+..+|.-....=...|+.+.|..+|+-.-.+| -...|.+.|+--...|.++.|..+++++++..+... .+...+
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA 547 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFA 547 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHH
Confidence 567888888888889999999999999773244 356788888888899999999999999999887653 565555
Q ss_pred HHHH-----hcC-----------CchHHHHHHHHHHh
Q 007517 438 NIYA-----SQG-----------RFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~-----~~g-----------~~~~a~~~~~~m~~ 458 (600)
.-=. ..| ....|.++|+....
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4433 333 45567777776643
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.4e-11 Score=113.06 Aligned_cols=233 Identities=15% Similarity=0.185 Sum_probs=155.3
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCc
Q 007517 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSV 161 (600)
Q Consensus 90 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~ 161 (600)
++-+...+...++..||.|+++--..+.|.+++++-.. .+..+||.+|.+-.- ..++.+..+|. .||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 33333344667888899999988888899998888766 667788888776443 33356666665 7888
Q ss_pred cchhHHHHHHHhcCCHHHHHHHH----Hhcc----cCChhhHHHHHHHHHHcCChHH-HHHHHHHHHHc--C--Ccc---
Q 007517 162 VASNSMILGLGQNGEVQKARVVF----DQMR----EKDDATWSGMIKVYERKGYELE-VIDLFTLMQKE--G--VRV--- 225 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~p--- 225 (600)
.++|+++.+..+.|+++.|++.+ .+|. +|...+|..+|..+.+.+++.+ |..++.+.+.. | .+|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 88888888888888877766544 4443 4677788888888888777754 44444444432 2 222
Q ss_pred -CchhHhhHHHHHhhhcchHHHHHHHHHHHHcC----CCCc---hhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCH
Q 007517 226 -NFPSLISVLSVCASLASLDHGRQVHAQLVRCQ----FDVD---VYVASVLITMYIKCGELVKGKLIFDNFAS----KDI 293 (600)
Q Consensus 226 -~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~ 293 (600)
|...|.+.++.|.+..+.+.|.+++....... +.++ ..-|..+....+....++.-...|+.|.. |+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34557778888888888888888887665421 1222 23445566666777777777777777654 455
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
.+-..++.+....|.++-.-+++.+|...|..-
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 555556666666677766667777766665333
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.6e-11 Score=114.19 Aligned_cols=192 Identities=10% Similarity=0.112 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
+.+...+.+-|+-.++.++|...|++... +-...|+.|..-|....+...|++-++..++-. +-|...|-.+-++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 34555566777788888999999988765 345789999999999999999999999988742 44566888999999
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
.-.+...-|.-+|++...- -+.|...|.+|.+.|.+.+++++|.+-|.+. .-..+...+..|...+.+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999888762 3557889999999999999999999999887 11335577888899999999999999
Q ss_pred HHHHHHhc-------cCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQ-------LEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..+++-++ .+|....+...|+.-+.+.+++++|..+-...
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99888776 33433344556788888899999988765543
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=9.6e-12 Score=128.11 Aligned_cols=323 Identities=16% Similarity=0.194 Sum_probs=186.9
Q ss_pred CChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007517 144 GRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTL 217 (600)
Q Consensus 144 g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (600)
|++++|..++.+++ +.....|.+|...|-..|+.+++...+-... ..|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 44444444444444 3333444444444444444444444332222 12344444444444444445555444444
Q ss_pred HHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHH----HHHHHHHcCCHHHHHhhhhhcCC--C
Q 007517 218 MQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASV----LITMYIKCGELVKGKLIFDNFAS--K 291 (600)
Q Consensus 218 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~~~~--~ 291 (600)
..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-... .+..|...++-+.|.+.++.... .
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44432 22222222333344444444444444444444332222111111 23334444444555555554433 1
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHHhcc
Q 007517 292 ---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG---------------------------VMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 292 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~t~~~ll~a~~~~ 341 (600)
+...++.++..|.....++.|......+.... +.++...+ -+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 23445666666666666666666666665521 12222221 122233444
Q ss_pred CCHHHHHHHHHHhHhcCC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 342 GKVKEGREIFESMKSKYL--VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
...+....+......+ . ..-+...|.-+.++|...|++.+|+++|..+ +...+...|--+..+|...|.++.|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444443 3 3335788999999999999999999999988 22335789999999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
+.+++++.+.|++...-..|+.+|...|+.++|.+++..|..-+-...+++.|
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999886433333355555
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.51 E-value=1.6e-11 Score=124.58 Aligned_cols=274 Identities=12% Similarity=0.095 Sum_probs=164.4
Q ss_pred cCCHHHHHHHHHhcccC--Chh-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHh--hHHHHHhhhcchHHHHH
Q 007517 174 NGEVQKARVVFDQMREK--DDA-TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLI--SVLSVCASLASLDHGRQ 248 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 248 (600)
.|+++.|++.+....+. ++. .+.....+..+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666655432 122 2222233335667777777777766553 34443222 22345556677777777
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CH--------HHHHHHHHHHHhcCChHHHHHHHH
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DI--------VMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777766655 445666667777777777777777776666542 11 123333333333444455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 007517 318 EMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD- 395 (600)
Q Consensus 318 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 395 (600)
+.-+. .+.+......+..++...|+.++|.++++...+. +|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 54332 2345556666777777777888887777776653 3444322 222223447777777777766 33443
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+....++...|...+++++|...|+++++..|++ ..+..++.++.+.|+.++|.+++++-.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456677777778888888888888888887776 566778888888888888877777553
No 37
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=7.4e-10 Score=104.93 Aligned_cols=409 Identities=14% Similarity=0.126 Sum_probs=274.1
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcc----hHHH---HHHHHHhcCChHHHHHHHhhCCC---CCcccHHHH
Q 007517 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVV----AQTN---MVLGYCQDGRVDEGREIFDEMPK---KNVISWTTM 105 (600)
Q Consensus 36 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~---li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~l 105 (600)
.+.+-|.|+++- ..|.+.++.-+|+.|...++. .-.. |+..|-...-.=.-.+.|-.|.+ .+..+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 345778888765 468899999999999854332 1222 33333333333233455656654 455566
Q ss_pred HHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHH
Q 007517 106 ISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 106 i~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 181 (600)
+.|...+ ++-+..-....|+.++|.+.++--..+.|.+++++.. ..+..++|.+|.+-.-.-. .
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 3454433 4444444566899999999999999999999999887 4556677888765432222 5
Q ss_pred HHHHhcc----cCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH-HHHHHHH
Q 007517 182 VVFDQMR----EKDDATWSGMIKVYERKGYELE----VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH-GRQVHAQ 252 (600)
Q Consensus 182 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~ 252 (600)
++..+|. .||..|+|++++...+.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 5666665 5799999999999999998865 57788999999999999999999999888877644 4455555
Q ss_pred HHHc----CC----CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----------CHHHHHHHHHHHHhcCChHHHH
Q 007517 253 LVRC----QF----DVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----------DIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 253 ~~~~----~~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+... .+ +.|...+...++.+.+..+.+-|.++-.-.... ...-|..+....++....+.-+
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5432 22 334556666777777889999998887655432 2245666788888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-C--------HHH--
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-Q--------VED-- 382 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-- 382 (600)
.+|+.|.-.-+-|+..+...+++|....|.++-..+++..++. +|..-+.....-+...+++.. . +..
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 9999999888889999999999999999999988888887775 343333333333334444333 1 111
Q ss_pred ---HHHHHH-------hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCCCc--hHHHHHHHHHhcCCc
Q 007517 383 ---AMKLIE-------AM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPKNAG--PYILLSNIYASQGRF 446 (600)
Q Consensus 383 ---A~~~~~-------~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~--~~~~l~~~~~~~g~~ 446 (600)
|..+++ ++ ...-.....+...-.+.+.|..++|.+++....+. -|..|. +...+.+.-......
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sp 577 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSP 577 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCH
Confidence 111111 11 12223445555666677888888888888877542 233322 223445555566677
Q ss_pred hHHHHHHHHHHhCCC
Q 007517 447 HDVAELRKNMRKRNV 461 (600)
Q Consensus 447 ~~a~~~~~~m~~~g~ 461 (600)
..|..+++.|...+.
T Consensus 578 sqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 578 SQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHHHHHHHHcCc
Confidence 778888887766554
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.4e-11 Score=115.79 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=170.1
Q ss_pred hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 240 LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 240 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
.|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46777788888888876533 333366677788889999999999987654 46667777777777788999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 317 HEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 317 ~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
++.+. +.|+. ..|..+--+..+.+.++++...|+..+++ ++.-+++|+-....+...++++.|.+.|+.. .++|
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99887 45654 46777777777889999999999999986 4666899999999999999999999999876 3344
Q ss_pred C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 395 D---------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+ +.+-.+++-.-.+ +++..|+.+++++++++|.....|..|+..-...|+.++|.++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3333333333333 8999999999999999999989999999999999999999999997653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=1.3e-10 Score=117.98 Aligned_cols=281 Identities=14% Similarity=0.055 Sum_probs=177.3
Q ss_pred CCChHHHHHHHhhcCC-C-Ccch-HHHHHHHHhcCCChHHHHHHHhhCC--CCCccchh--HHHHHHHhcCCHHHHHHHH
Q 007517 112 NNRIDVARKLFEVMPE-K-NEVS-WTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASN--SMILGLGQNGEVQKARVVF 184 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~-p-~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~--~li~~~~~~g~~~~A~~~f 184 (600)
.|+++.|.+.+....+ . ++.. |.....+....|+++.|.+.+.++. .++..... .....+...|+.+.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4666666655555433 1 1222 2222233355566666666665555 22222111 2234555556666665555
Q ss_pred HhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 007517 185 DQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261 (600)
Q Consensus 185 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (600)
++..+. ++.....+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 177 ~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------------------------- 228 (398)
T PRK10747 177 DKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------------------------- 228 (398)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------------------------
Confidence 555432 3444555555555555555555555555554322111 000000
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+++++..+. .||.... ++.+.
T Consensus 229 ~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~ 304 (398)
T PRK10747 229 QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPR 304 (398)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhh
Confidence 01222223333334455566666666654 47778888999999999999999999998874 5555322 33344
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
...++.+++.+..+...+++ +-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|..
T Consensus 305 l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred ccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45699999999999988764 456778889999999999999999999988 678999999999999999999999999
Q ss_pred HHHHHhccC
Q 007517 418 AAKKLLQLE 426 (600)
Q Consensus 418 ~~~~~~~~~ 426 (600)
++++.+.+.
T Consensus 383 ~~~~~l~~~ 391 (398)
T PRK10747 383 MRRDGLMLT 391 (398)
T ss_pred HHHHHHhhh
Confidence 999987753
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=5.2e-10 Score=107.25 Aligned_cols=452 Identities=15% Similarity=0.132 Sum_probs=334.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCCC--CC-cchHHHHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMPE--KN-VVSWTVMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLG 77 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~ 77 (600)
.+|...|-..+..=.++.....|..++++... |- -..|-..+.+=-..|++..|+++|++-. +|+...|++.|..
T Consensus 104 ~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 104 YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKF 183 (677)
T ss_pred cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 34566788888888899999999999998762 32 2356666666667899999999999876 7999999999999
Q ss_pred HHhcCChHHHHHHHhhCC--CCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC----cchHHHHHHHHhcCCChHHH
Q 007517 78 YCQDGRVDEGREIFDEMP--KKNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN----EVSWTAMLMGYTQCGRIQDA 149 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~----~~t~~~ll~~~~~~g~~~~a 149 (600)
-.+-..++.|+.++++.. .|++.+|---...=-++|+...|..+|....+ .| ...|++....-.++..++.|
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999854 59999998888888899999999999998877 33 33455555555567788899
Q ss_pred HHHHhhCC---CCC--ccchhHHHHHHHhcCCHH---HHHHH-----HHhcccC---ChhhHHHHHHHHHHcCChHHHHH
Q 007517 150 WELFKAMP---MKS--VVASNSMILGLGQNGEVQ---KARVV-----FDQMREK---DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 150 ~~~~~~~~---~~~--~~~~~~li~~~~~~g~~~---~A~~~-----f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
.-+|...+ +.+ ...|..+...=-+-|+-. +++-- ++.+... |-.+|-..+..-...|+.+...+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 99998877 333 345555555555566543 33322 2333332 56778888888888999999999
Q ss_pred HHHHHHHcCCccCc-------hhHhhHHHHH---hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH----HcCCHH
Q 007517 214 LFTLMQKEGVRVNF-------PSLISVLSVC---ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI----KCGELV 279 (600)
Q Consensus 214 ~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~----~~g~~~ 279 (600)
+|++.... ++|-. ..|.-+=-+| ....+.+.+++++...++ -+|...+++..+=-+|+ ++.++.
T Consensus 344 ~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 344 TYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccH
Confidence 99999875 55532 1222222222 356789999999999998 35667788887766665 578999
Q ss_pred HHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 280 KGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 280 ~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
.|.+++..... |...++..-|..=.+.++++....+|++.++-+ +-|..++......=...|+.+.|+.+|.-....
T Consensus 422 ~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 422 GARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 99999987654 677788888888889999999999999999863 445667877777777889999999999998876
Q ss_pred CCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----HcC-----------CHHHHHHHHH
Q 007517 358 YLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACR-----THM-----------KLDLAEVAAK 420 (600)
Q Consensus 358 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~ 420 (600)
..+......|.+.|+.=...|.++.|..+++++ ...+...+|-++..--. +.+ +...|..+|+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~ife 580 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFE 580 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHH
Confidence 444445677888999999999999999999988 44556668877765433 334 5678888998
Q ss_pred HHhc----cCCCCC--chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 421 KLLQ----LEPKNA--GPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 421 ~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
++.. ..|... .......+.=...|...+...+-+.|-
T Consensus 581 rAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 581 RANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 8775 233221 112223333445676666666666663
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.46 E-value=9.4e-11 Score=120.31 Aligned_cols=444 Identities=14% Similarity=0.096 Sum_probs=272.0
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCC----CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHH
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMP----EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGY 78 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~ 78 (600)
.||.+||..+|.-|+..|+.+.|- +|..|. +-+...++.++.+....++.+.+. +|...+|++|..+|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ay 93 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLKAY 93 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHHHH
Confidence 588899999999999999999988 888887 235567888888888888877665 77888999999999
Q ss_pred HhcCChHH---HHHHHhhCCC---------C-------------CcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc
Q 007517 79 CQDGRVDE---GREIFDEMPK---------K-------------NVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV 131 (600)
Q Consensus 79 ~~~g~~~~---A~~~~~~m~~---------~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~ 131 (600)
.+.||+.. .++.++.+.. + ....-...+...+-.|-++.+++++..+.. .+.
T Consensus 94 r~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~- 172 (1088)
T KOG4318|consen 94 RIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA- 172 (1088)
T ss_pred HhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-
Confidence 99998754 2221221110 0 000112344455556777777777777655 111
Q ss_pred hHHHHHHHHhcCCC-hHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHc
Q 007517 132 SWTAMLMGYTQCGR-IQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERK 205 (600)
Q Consensus 132 t~~~ll~~~~~~g~-~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~ 205 (600)
++..+++-+..... +++-...-.... .+++.++.+++..-...|+++.|..++.+|.++ +..-|-.++-+ .
T Consensus 173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~ 249 (1088)
T KOG4318|consen 173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I 249 (1088)
T ss_pred hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence 22223555444333 333333333333 478888888999888899999999999999876 23334444444 7
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH-----------HHHHHHH-------------------
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ-----------VHAQLVR------------------- 255 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-----------~~~~~~~------------------- 255 (600)
++...+..+++-|+..|+.|+..|+...+..|.+.|....+.. +...+.+
T Consensus 250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s 329 (1088)
T KOG4318|consen 250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGS 329 (1088)
T ss_pred ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHH
Confidence 7777888888888889999999999888888877555333221 1111110
Q ss_pred ------cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-------CHHHHHHHHHHHHhcCC--------------
Q 007517 256 ------CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-------DIVMWNSIISGYAQYGL-------------- 308 (600)
Q Consensus 256 ------~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~-------------- 308 (600)
.|+.....+|...+. ....|.-++..++-..+..| ++..|..++.-|.+.-+
T Consensus 330 ~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgl 408 (1088)
T KOG4318|consen 330 TKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGL 408 (1088)
T ss_pred hhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122222222222111 11245545555554444332 34444444433322110
Q ss_pred --------hHHHHHHHHHHHHCCCCCCHHH----------------------------HHHHHHHHhccCCHHHHHHHHH
Q 007517 309 --------GEKSLKVFHEMFSSGVMPDDVT----------------------------LVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 309 --------~~~A~~~~~~m~~~g~~p~~~t----------------------------~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
..+..++... ..||..- -+.++..|...-+..+++..-+
T Consensus 409 s~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~e 483 (1088)
T KOG4318|consen 409 SLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEE 483 (1088)
T ss_pred HhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1333211 1222223333333333333322
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP-----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL-- 425 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 425 (600)
..... - -...|..||+.+......++|..+.++.. +.-|..-+..+.+...+++....+..+++.+.+.
T Consensus 484 kye~~-l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 484 KYEDL-L---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHH-H---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 22221 1 13678999999999999999999999883 2335556788889999999999999999888773
Q ss_pred -CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 426 -EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 426 -~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
.|.-...+..+.+.-+..|+.+...++++-+...|+.. .|.-|
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 34444556678888889999999999999999988876 34444
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.4e-10 Score=118.29 Aligned_cols=142 Identities=11% Similarity=0.024 Sum_probs=92.1
Q ss_pred HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHH
Q 007517 279 VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL---VGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 279 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+...+.++..+. ++...+..+...+...|+.++|.+.+++..+. .||.... ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444444443 37777888888888888888888888888775 4444421 111112233466777777777
Q ss_pred HhHhcCCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 353 SMKSKYLVEPKT--EHYACMVDLLGRAGQVEDAMKLIEA--M-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 353 ~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
...+.. +-++ ....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNV--DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 766643 2233 5556777777777777777777773 2 4567777777777777777777777777777654
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.1e-11 Score=123.93 Aligned_cols=275 Identities=12% Similarity=0.035 Sum_probs=213.0
Q ss_pred CHHHHHHHHHhcccC--Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHcC-C-ccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 176 EVQKARVVFDQMREK--DD-ATWSGMIKVYERKGYELEVIDLFTLMQKEG-V-RVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
+..+|...|...++. |. .....+..+|...+++++|.++|+...+.. . .-+...|+++|-.+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888886643 33 334557788999999999999999988742 1 12456777777654321 122222
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
.+-.-.--+..+.+|.++.++|+-.++.+.|.+.|++..+- ...+|+.+..-+.....+|.|...|+..+. +.|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 22222223567889999999999999999999999998763 557888888889999999999999999864 4555
Q ss_pred HH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007517 328 DV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLL 403 (600)
Q Consensus 328 ~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll 403 (600)
.. .|..+...|.+.++++.|+-.|+.+.+ +.| +.....++...+-+.|+.|+|+++++++ -..| |+..--.-.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 43 677788889999999999999999876 345 5777888899999999999999999988 3333 455544555
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+...+++++|+..++++.++.|++...|..++.+|-+.|+.+.|..-|.-+.+.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 66777899999999999999999999999999999999999999999877766553
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=1.6e-11 Score=122.72 Aligned_cols=246 Identities=13% Similarity=0.078 Sum_probs=194.8
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
-+..+|+..|...... +.-+......+..+|...+++++++.+|+.+.+.. .-.+..+|.+.+.-+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999984443 34445677788899999999999999999998864 12456677776654433221111111
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC
Q 007517 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP 362 (600)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p 362 (600)
-+-.+....+.+|.++...|.-+++.+.|++.|++..+ +.| ...+|+.+-.-+.....+|.|...|+.... .
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----V 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----C
Confidence 11222234678999999999999999999999999987 466 567887777777778889999999987653 5
Q ss_pred ChHHHHH---HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYAC---MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~---li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
++.+|++ |.-.|.|.++++.|+-.|+++ .+.| +.+....+...+.+.|+.++|+++++++..++|.++..-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 567899999999999999988 6777 5667777888899999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007517 438 NIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++...+++++|.+.++++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=7.2e-10 Score=114.59 Aligned_cols=428 Identities=12% Similarity=0.085 Sum_probs=242.8
Q ss_pred HhCCChHHHHHHHhhCCC---CCcchHHHHHHHHHcCCCHHHHHHHHcc---CCCCCcchHHHHHHHHHhcCChHHHHHH
Q 007517 17 VEEGMITEAGTLFWQMPE---KNVVSWTVMLGGFIRDSRIDDARRLFDM---MPEKDVVAQTNMVLGYCQDGRVDEGREI 90 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~~ 90 (600)
.-.|++++|.+++.+++. .....|.+|...|-..|+.+++...+-. +.+.|...|..+.....+.|.++.|+-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 344999999999988883 4556899999999999999998876543 3366778899999999999999999999
Q ss_pred HhhCCCCCcccHHH---HHHHHHhCCChHHHHHHHhhcCC--CC------cchHHHHHHHHhcCCChHHHHHHHhhCC--
Q 007517 91 FDEMPKKNVISWTT---MISGYVNNNRIDVARKLFEVMPE--KN------EVSWTAMLMGYTQCGRIQDAWELFKAMP-- 157 (600)
Q Consensus 91 ~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~--p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 157 (600)
|.+..+.++.-|-. -+..|-+.|+...|.+.|.++.+ |. ..+.-.++..+...++-+.|.+.++...
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99877644433433 35678888999999999998887 41 1233334556666676677877777666
Q ss_pred ---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc----C----------------------------------------
Q 007517 158 ---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE----K---------------------------------------- 190 (600)
Q Consensus 158 ---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~---------------------------------------- 190 (600)
..+....+.++..|.+...++.|......+.. +
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23445567788888888877777766544332 1
Q ss_pred -----------------------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 191 -----------------------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 191 -----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
++..|.-+..+|...|++.+|+.+|..+...-.--+.+.|..+..++-..|..++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 111233344455555555555555555544322223344444555555555555555
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH------------HHHHHHHHHHHhcCChHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI------------VMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.++.++... |.+.-+--.|...|.+.|+.++|.+++..+..+|. ..--.....+.+.|+.++=+.+
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5555555443 22233333444455555555555555555443331 1111122334445554444444
Q ss_pred HHHHHHCC-----CCCC-----------------HHHHHHHHHHHhccCCHHHHHHHHHH-----hHhcCCCCCC--hHH
Q 007517 316 FHEMFSSG-----VMPD-----------------DVTLVGVLSACSYTGKVKEGREIFES-----MKSKYLVEPK--TEH 366 (600)
Q Consensus 316 ~~~m~~~g-----~~p~-----------------~~t~~~ll~a~~~~g~~~~a~~~~~~-----~~~~~~~~p~--~~~ 366 (600)
-.+|.... +-|+ ..+.-.++.+-.+.++....++.... .....++.-+ -..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 43333211 0010 00111111111111111111110000 0000111111 134
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----C-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CCCCCchH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM----P-FEPDA---IIWGSLLGACRTHMKLDLAEVAAKKLLQL-----EPKNAGPY 433 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~ 433 (600)
+.-++..+.+.|++++|+.+...+ - ..++. ..=...+.++...+++..|....+-++.. +|.-+..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 456778889999999999998877 1 12222 12234456677889999999999988875 55544455
Q ss_pred HHHHHHHHhcCC
Q 007517 434 ILLSNIYASQGR 445 (600)
Q Consensus 434 ~~l~~~~~~~g~ 445 (600)
+...+.....|+
T Consensus 709 n~~~s~~~~~~q 720 (895)
T KOG2076|consen 709 NLDFSYFSKYGQ 720 (895)
T ss_pred HHHHHHHHHHHH
Confidence 544445555443
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.42 E-value=2.6e-10 Score=116.45 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=179.2
Q ss_pred hcCCHHHHHHHHHhcccC--C-hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch--hHhhHHHHHhhhcchHHHH
Q 007517 173 QNGEVQKARVVFDQMREK--D-DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP--SLISVLSVCASLASLDHGR 247 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 247 (600)
..|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456666666666655432 1 222333345556667777777777666543 23332 2222355555667777777
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHH----HHHHHHHhcCChHHHHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWN----SIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
..++.+.+.. |.++.+...+..+|.+.|++++|.+.+..+.+. +...+. ....++...+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776665 445566677777777777777777777666532 222221 11112223333344445555555
Q ss_pred HCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH-HHHHHHHH--hhcCCHHHHHHHHHhC-CCC
Q 007517 321 SSGV---MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH-YACMVDLL--GRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 321 ~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li~~~--~~~g~~~~A~~~~~~m-~~~ 393 (600)
+... +.+...+..+...+...|+.++|.+.+++..++. |+... ...++..+ ...++.+.+.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 1366777888889999999999999999998753 44321 10122222 3357788888888776 334
Q ss_pred CC-H--HHHHHHHHHHHHcCCHHHHHHHHH--HHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 394 PD-A--IIWGSLLGACRTHMKLDLAEVAAK--KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 394 p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|+ + ....++...+.+.|++++|.+.|+ .+.+..|++ ..+..++..+.+.|+.++|.+++++-..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 3 567789999999999999999999 577788876 5577999999999999999999997543
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=1.4e-12 Score=126.42 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=97.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-cc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 167 MILGLGQNGEVQKARVVFDQM-RE----KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
+...+.+.|++++|.+++++. .. .|+..|..+.......+++++|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345555666666666666332 11 24444555555555666666666666666654322 33344444444 4666
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA-----SKDIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
++++|.++.....+.. +++..+..++..|.+.++++++..+++.+. ..+...|..+...+.+.|+.++|++.|
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666665544432 445556667777777777777777776643 246677888888888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 317 HEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 317 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
++..+. .|+ ......++..+...|+.+++.+++....+.. +.++..+..+..+|...|+.++|...+++. ...|
T Consensus 170 ~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 888874 565 5567778888888888888888888877642 556677888888888888999998888887 3234
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 395 -DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 395 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
|+.+...+..++...|+.++|..+.+++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 677777888888888888888888877654
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.37 E-value=1.1e-08 Score=102.00 Aligned_cols=360 Identities=13% Similarity=0.123 Sum_probs=284.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhc
Q 007517 69 VAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQ 142 (600)
Q Consensus 69 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~ 142 (600)
.+|+.-...|.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..+|++... |.. ..|....+..-.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 4566666667777888888888877665 3556787777666677999999999999887 544 455666677778
Q ss_pred CCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007517 143 CGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTL 217 (600)
Q Consensus 143 ~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (600)
.|+...|+.++.++. +.+...|-+-+..-..+.+++.|+.+|.+... +....|.--+..---.+..++|++++++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 899999999999887 55667888999999999999999999998864 4677787777777788999999999988
Q ss_pred HHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCH
Q 007517 218 MQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDI 293 (600)
Q Consensus 218 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 293 (600)
..+. -|+-. .|..+-..+-+.++.+.|+..|..-.+. ++..+..|-.|...--+.|++-.|+.+|++..- +|.
T Consensus 677 ~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 677 ALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 8774 45544 4555666777888888888877655543 466778899999999999999999999998754 477
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
..|-..|..=.+.|+.++|..+..+..+. .+-+...|..-|....+.++-......+.+ ...|+.+.-.+..+
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~l 826 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKL 826 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHH
Confidence 89999999999999999999999988875 344556677767666666664444433332 25677888888999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
+....+++.|.+.|.+. ...|| ..+|.-+...+.+||.-+.-..++.+...-+|.....+..++.
T Consensus 827 fw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 827 FWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 99999999999999988 55565 6689889999999999999999999999999988666655543
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.1e-09 Score=101.97 Aligned_cols=156 Identities=8% Similarity=0.098 Sum_probs=77.1
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
.|...+.+-++-.+.-++|...|++..+.+ +....+|+.+..-|....+...|.+.++...+ .|-..|-.|..+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 344444444444455555555555555443 23344455555555555555555555554332 34455555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
-.+.+.-|+-.|++..+. +| |...+..|..+|.+.++.++|.+.|.....- | ..+...|..|.++|-+.++.++|
T Consensus 410 im~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555442 33 2344555555555555555555555554432 1 22334455555555555555555
Q ss_pred HHHHH
Q 007517 384 MKLIE 388 (600)
Q Consensus 384 ~~~~~ 388 (600)
...|+
T Consensus 486 a~~ye 490 (559)
T KOG1155|consen 486 AQYYE 490 (559)
T ss_pred HHHHH
Confidence 55444
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.4e-09 Score=104.21 Aligned_cols=262 Identities=12% Similarity=0.038 Sum_probs=205.7
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
++.....-..-+...+++.+.++++....+.. ++....+..=|..+...|+...-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444445556778899999999999988753 4555555555666677777666655555666653 667788889988
Q ss_pred HHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
.|.-.|+..+|++.|.+...- =...|-.....|+-.|..++|+..+...-+. ++-...-+.-+-.-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 888899999999999876653 3478999999999999999999999887653 222222233344467888999999
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--------PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.++|.+.... .+.|+.+++-+.-+....+.+.+|...|+.. +-.+ -..+|+.|..+|++.+.+++|+..
T Consensus 400 e~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999988753 2446778888888888889999999998865 1112 356788999999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+++++.+.|.++.+|..++-+|...|+++.|...|.+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.6e-10 Score=108.69 Aligned_cols=198 Identities=16% Similarity=0.105 Sum_probs=164.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.....+..+...|...|++++|...|++... .+...+..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3356677788899999999999999987653 356788888999999999999999999998753 334556777788
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...|++++|.+.++........+.....+..+...|.+.|++++|.+.+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 889999999999999998764222334567788899999999999999999887 3334 46678888899999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999998888888888899999999999999999888764
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=1.4e-09 Score=99.61 Aligned_cols=278 Identities=12% Similarity=0.136 Sum_probs=164.3
Q ss_pred CCChHHHHHHHhhcCCCCcch---HHHHHHHHhcCCChHHHHHHHhhCC-CCCcc------chhHHHHHHHhcCCHHHHH
Q 007517 112 NNRIDVARKLFEVMPEKNEVS---WTAMLMGYTQCGRIQDAWELFKAMP-MKSVV------ASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~------~~~~li~~~~~~g~~~~A~ 181 (600)
++++++|.++|-+|.+.|+.| -.+|.+.+.+.|..+.|..+|+.+. .||.. +...|..=|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 578899999999998844444 4567888999999999999999888 44433 2334666788999999999
Q ss_pred HHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchh----HhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 182 VVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS----LISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 182 ~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
.+|..+.+.+ ......|+..|-+..++++|++.-+++.+.|-.+..+- |.-+........+.+.|+..+....
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9999988743 34566788899999999999999988887665443322 2222222233344455555554444
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007517 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 334 (600)
+.. +..+...-.+ ...+...|+++.|++.++...+.+..--..+...|
T Consensus 208 qa~-~~cvRAsi~l-------------------------------G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 208 QAD-KKCVRASIIL-------------------------------GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred hhC-ccceehhhhh-------------------------------hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 433 1122222223 34455555666666666655554322223344455
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHc---C
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI-EAMPFEPDAIIWGSLLGACRTH---M 410 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~---g 410 (600)
..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|...+ +.+.-+|+...+..|+...... |
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 55666666666666666555543 233344444444444344444444433 3334466666666666654433 2
Q ss_pred CHHHHHHHHHHHhc
Q 007517 411 KLDLAEVAAKKLLQ 424 (600)
Q Consensus 411 ~~~~a~~~~~~~~~ 424 (600)
...+-+..++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 23333444444443
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.2e-09 Score=101.69 Aligned_cols=394 Identities=11% Similarity=-0.033 Sum_probs=251.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhCC--CCC-cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchH---HHHHHHHHhcC
Q 007517 9 WTAMVRGYVEEGMITEAGTLFWQMP--EKN-VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQ---TNMVLGYCQDG 82 (600)
Q Consensus 9 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~li~~~~~~g 82 (600)
+-+...-|.++|.+++|++.|...+ .|| +..|.....+|...|+|++..+.-....+-++.-- ..-.+++-+.|
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3344556778888899999888877 466 77788888888888888888887776665544333 33334556667
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHH------------HHHHHhhcCC---CCcchHHHHHHHHhcCCChH
Q 007517 83 RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDV------------ARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQ 147 (600)
Q Consensus 83 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~------------A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~ 147 (600)
++++|..= +|-.++..++....-..- +.+.+..-+. |......+....+...-
T Consensus 198 ~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 198 KFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred cHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 77766531 222333333332222222 2222221111 33333333333221100
Q ss_pred HHHHHHhhCCCCCccchhHHHH----HHHhc-CCHHHHHHHHHhcc-------cCC---------hhhHHHHHHHHHHcC
Q 007517 148 DAWELFKAMPMKSVVASNSMIL----GLGQN-GEVQKARVVFDQMR-------EKD---------DATWSGMIKVYERKG 206 (600)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~li~----~~~~~-g~~~~A~~~f~~~~-------~~~---------~~~~~~li~~~~~~g 206 (600)
...+..+.......+.. .|... ..+..|...+.+-. ..+ ..+.+.-..-+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 00000111111122222 22211 12333333332211 111 112222222345578
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++..|...|+........++. .|.-+..++....+.++....|....+.+ +.++.+|.--.+++.-.+++++|..=|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 889999999998876433332 27778888999999999999999999876 5677788888899999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC
Q 007517 287 NFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK 363 (600)
Q Consensus 287 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 363 (600)
+... .++..|-.+..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+...+- .|+
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~~ 494 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EPR 494 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---ccc
Confidence 8776 35566777777777888999999999999876 4444567888888999999999999999988752 333
Q ss_pred ---------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 364 ---------TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 364 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.+--+++-.-. .+++..|.+++.+. .+.| ....+.+|...-.+.|+.++|+++|++...+.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222222332223 38999999999988 5555 46679999999999999999999999987754
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=7.3e-11 Score=121.09 Aligned_cols=263 Identities=14% Similarity=0.118 Sum_probs=195.9
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
.++-.++..|+.|+.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778889999999999999999999999999999 9999999989999999999999999999887765 678
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
..+|+.|..+|.++|+... ++..++ -...+...++..|....-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999765 333333 233455566777777777777665443334445543 3566
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 373 LLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH-MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.+.-.|-++.+.+++..+|...-.......+.-+... ..+++-....+...+ .|+ +.+|..+...-..+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 6677888999999999886432111111134444433 334444444444445 554 4899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCcc
Q 007517 452 LRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYCPDSSFV 516 (600)
Q Consensus 452 ~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~p~~~~~ 516 (600)
++..|+++|++..+.+.|-.+.+ .++. .-++.+.+-|++.|+.|+..+.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g------~~~~----------q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG------INAA----------QVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc------Cccc----------hHHHHHHHHHHHhcCCCCcchh
Confidence 99999999999988888865533 1211 1366788999999999988764
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=7.3e-12 Score=85.36 Aligned_cols=50 Identities=36% Similarity=0.582 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.4e-08 Score=94.55 Aligned_cols=286 Identities=13% Similarity=0.077 Sum_probs=185.3
Q ss_pred HHHHHHh--CCChHHHHHHHhhcCC-CCc--chHHHHHHHHhcCCChHHHHHHHhhCCC----CCccchhHHHHHHHhcC
Q 007517 105 MISGYVN--NNRIDVARKLFEVMPE-KNE--VSWTAMLMGYTQCGRIQDAWELFKAMPM----KSVVASNSMILGLGQNG 175 (600)
Q Consensus 105 li~~~~~--~g~~~~A~~~~~~m~~-p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g 175 (600)
+..+..+ .|++..|.++..+-.+ .+. ..|..-..+.-..|+.+.+-..+.++.+ ++..+.-+........|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4444433 5788888888777655 222 2344445566677888888877777762 22334455566677777
Q ss_pred CHHHHHHHHHhcc---cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMR---EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
+...|..-.+++. .+++........+|.+.|++.+.+.++.+|.+.|+--|+.. .++
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l--- 227 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL--- 227 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH---
Confidence 7777776666554 34667777777788888888888888888777765433211 000
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 329 (600)
...+++.+++-....+..+.-...++..+. .++..--+++.-+.+.|+.++|.++.++..+.+..|+-.
T Consensus 228 --------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~ 299 (400)
T COG3071 228 --------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC 299 (400)
T ss_pred --------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH
Confidence 011223333322222333333334444443 245555666777778888888888888888877777622
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRT 408 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 408 (600)
.+-.+.+.++.+.-.+..+...+.++ .++..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+..++.+
T Consensus 300 ----~~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 300 ----RLIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ 373 (400)
T ss_pred ----HHHhhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 22356677777777777777766544 34477788888888888888888888866 677888888888888888
Q ss_pred cCCHHHHHHHHHHHhc
Q 007517 409 HMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~ 424 (600)
.|+.+.|..+.++.+.
T Consensus 374 ~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 374 LGEPEEAEQVRREALL 389 (400)
T ss_pred cCChHHHHHHHHHHHH
Confidence 8888888888887664
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.3e-07 Score=89.71 Aligned_cols=294 Identities=12% Similarity=0.041 Sum_probs=209.1
Q ss_pred cchHHHHHHHHhc--CCChHHHHHHHhhCC-----CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHH---H
Q 007517 130 EVSWTAMLMGYTQ--CGRIQDAWELFKAMP-----MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM---I 199 (600)
Q Consensus 130 ~~t~~~ll~~~~~--~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i 199 (600)
..+...-+.+++. .++-..+.+.+..+. +.|+....++...|...|+.++|...|++...-|+.+...| .
T Consensus 194 ~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya 273 (564)
T KOG1174|consen 194 FDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA 273 (564)
T ss_pred ccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence 3344444444433 344444444433332 67788888999999999999999999998876555443332 3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
-.+.+.|+.+..-.+...+.... +-+...|..-+...-...+++.|..+-+..++.. +.+...+-.-...+...|+.+
T Consensus 274 ~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 274 VLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchH
Confidence 34567888888888777776532 1222223333334445677888887777777654 334444444456677889999
Q ss_pred HHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHh
Q 007517 280 KGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACS-YTGKVKEGREIFESM 354 (600)
Q Consensus 280 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~ 354 (600)
+|.-.|+.... -+..+|.-|+..|...|++.+|.-+-+...+. +.-+..++..+- ..|. ....-++|.+++++.
T Consensus 352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence 99999986543 47899999999999999999999888776553 334445554431 2332 223457888888876
Q ss_pred HhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 355 KSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 355 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+ +.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...+...+.+.+|...|..++.++|++
T Consensus 431 L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 431 LK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 64 4566 567788889999999999999999987 667999999999999999999999999999999999998
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.5e-08 Score=95.85 Aligned_cols=432 Identities=12% Similarity=0.109 Sum_probs=265.6
Q ss_pred HHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHH--HHHHH--HhcCCh
Q 007517 12 MVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTN--MVLGY--CQDGRV 84 (600)
Q Consensus 12 ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--li~~~--~~~g~~ 84 (600)
=+..+.++|++++|.+.-..++ +.|...+..-+-+..+.+.+++|..+.+.-... .+++. +=.+| -+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 3456677889999999888877 345566666677788999999999776654321 12222 23444 477999
Q ss_pred HHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHH-HhcCCChHHHHHHHhhCCCCCccc
Q 007517 85 DEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMG-YTQCGRIQDAWELFKAMPMKSVVA 163 (600)
Q Consensus 85 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~ 163 (600)
++|...++...+.+..+...-...+.+.|++++|+++|+.+.+-+...+..-+.+ |...+....+. +.+........+
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~s 174 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcch
Confidence 9999999966555555666667778899999999999999977333323222221 11111111121 333333222334
Q ss_pred hhHHH---HHHHhcCCHHHHHHHHHhcc--------cCC-----hh-----hHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 007517 164 SNSMI---LGLGQNGEVQKARVVFDQMR--------EKD-----DA-----TWSGMIKVYERKGYELEVIDLFTLMQKEG 222 (600)
Q Consensus 164 ~~~li---~~~~~~g~~~~A~~~f~~~~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g 222 (600)
|..+- -.+...|++.+|+++++... +.| .. .---|.-.+...|+..+|..+|....+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 44433 35678899999999998872 111 11 12234456778999999999999998874
Q ss_pred CccCchhHhhHH---HHHhhhcchHH--HHHHHHH-----------HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 223 VRVNFPSLISVL---SVCASLASLDH--GRQVHAQ-----------LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 223 ~~p~~~t~~~ll---~~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
.+|........ .+...-.++-. ....++. .....-......-+.++.+|. +..+.+.++-.
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a 331 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSA 331 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHH
Confidence 44543222211 12211111111 0111110 000000112222334555554 45566677766
Q ss_pred hcCCCC-HHHHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHH--------H
Q 007517 287 NFASKD-IVMWNSIISGYA--QYGLGEKSLKVFHEMFSSGVMPDD--VTLVGVLSACSYTGKVKEGREIFE--------S 353 (600)
Q Consensus 287 ~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--------~ 353 (600)
..+... ...+.+++.... +...+.+|.+++....+. .|.. ......+......|+++.|.+++. .
T Consensus 332 ~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 332 SLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred hCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 666532 344555544432 223577888888877654 4444 334445556678899999999998 4
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+.+ +.-.+.+...++.+|.+.++.+.|..++.+. .-++. ..+|.-+...-.++|+.++|...++++.+
T Consensus 410 ~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 ILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 433 2345667788999999999888888877765 11222 23344455556678999999999999999
Q ss_pred cCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 425 LEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 425 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.+|++......++.+|+.. +.+.|..+-+.
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999876 45666665443
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=2.3e-11 Score=82.89 Aligned_cols=50 Identities=22% Similarity=0.308 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh
Q 007517 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 239 (600)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=1.7e-08 Score=95.63 Aligned_cols=275 Identities=15% Similarity=0.157 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 174 NGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
.|++..|+++..+-.+. .+..|..-+.+--+.|+.+.+-.++.+..+.--.++.....+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57788888777765432 333455555666677888888888877766422334444455555667778888888877
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----------DIVMWNSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 319 (600)
..+.+.+ +.++.+.......|.+.|++.....+...+.+. ...+|+.++.-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 7777766 556777788888888888888888888877653 1246777777666666666655566665
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH----hCCCCCC
Q 007517 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE----AMPFEPD 395 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~p~ 395 (600)
-.. .+-+...-.+++.-+...|+.++|.++..+..++ +..|+ ...++ ...+-++.+.=.+..+ ..|. +
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~--~ 327 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPE--D 327 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCC--C
Confidence 433 4455555666777788889999999988887765 34444 11111 1234444444333333 3343 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+..+.+|...|.+++.+.+|...++.+++..|+. ..|..++.++.+.|+..+|.+++++...
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4788999999999999999999999999999976 8999999999999999999999887763
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=5.1e-09 Score=111.12 Aligned_cols=260 Identities=12% Similarity=0.055 Sum_probs=187.4
Q ss_pred ChhhHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCccCch-hHhhHHHHHh---------hhcchHHHHHHHHHHHH
Q 007517 191 DDATWSGMIKVYER-----KGYELEVIDLFTLMQKEGVRVNFP-SLISVLSVCA---------SLASLDHGRQVHAQLVR 255 (600)
Q Consensus 191 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 255 (600)
+...|...+.+-.. .+..++|+.+|++..+. .|+.. .+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556666665322 23457899999988874 55543 3444433332 23457899999999998
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH
Q 007517 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TL 331 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~ 331 (600)
.. +.+...+..+..++...|++++|...|++..+ .+...|..+...+...|++++|+..+++..+. .|+.. .+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 76 55777888888999999999999999998754 35678889999999999999999999999885 55543 23
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI-IWGSLLGACRT 408 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~ 408 (600)
..++.++...|++++|...++++.+.. +| ++..+..+...|...|++++|.+.++++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 334445666899999999999887642 34 4566788899999999999999999987 4455544 45555566677
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.| +.|...++++++..-..+..+..+...|.-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4788878877764322223333477788888888888777 7777654
No 62
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=1.7e-07 Score=93.70 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSI---ISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACS 339 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~ 339 (600)
+|...++.--.+|-++....+|+++.+--+.|=..+ ..-+-.+.-++++.+.|++-+..=-.|+.. .|+..|.-+.
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 444445555556666667777766654211111111 111223455677777776644432334543 3444333322
Q ss_pred ---ccCCHHHHHHHHHHhHhcCCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcC
Q 007517 340 ---YTGKVKEGREIFESMKSKYLVEPKT--EHYACMVDLLGRAGQVEDAMKLIEAM--PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 340 ---~~g~~~~a~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g 410 (600)
....++.|+.+|++..+ |.+|.. ..|-.....=.+-|....|++++++. ++++. ...|+..|.--...=
T Consensus 559 ~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHh
Confidence 23467888888888876 444432 12323333334567778888888887 33332 345777665433332
Q ss_pred CHHHHHHHHHHHhccCCCCCc--hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 411 KLDLAEVAAKKLLQLEPKNAG--PYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
-+..-..+++++++.-|++-. .....+..=.+.|..+.|+.++..-.+--
T Consensus 637 Gv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred CCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 244556778888887666422 23345566677888888888887665543
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.2e-08 Score=93.57 Aligned_cols=285 Identities=14% Similarity=0.128 Sum_probs=176.8
Q ss_pred CChHHHHHHHhhCCCCCccc---hhHHHHHHHhcCCHHHHHHHHHhcccC-Ch------hhHHHHHHHHHHcCChHHHHH
Q 007517 144 GRIQDAWELFKAMPMKSVVA---SNSMILGLGQNGEVQKARVVFDQMREK-DD------ATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~ 213 (600)
.+.++|..+|-.|...|+.+ .-+|.+.|-+.|.+|.|+++.+.+.++ |. ...-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45566666666666333333 335566666666666666666655432 21 122334445555566666666
Q ss_pred HHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH
Q 007517 214 LFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI 293 (600)
Q Consensus 214 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 293 (600)
+|..+.+.|. .-.....-|+..|-+..+|++|.++-+++..-+.
T Consensus 129 ~f~~L~de~e------------------------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 129 IFNQLVDEGE------------------------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred HHHHHhcchh------------------------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 6665554331 1122333445555555555555555443332111
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh
Q 007517 294 --------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV-GVLSACSYTGKVKEGREIFESMKSKYLVEPKT 364 (600)
Q Consensus 294 --------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 364 (600)
..|.-+...+....+.+.|..++.+..+. .|+.+--+ .+-......|+++.|.+.++.+.+. +..--.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~ 249 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLS 249 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHH
Confidence 23444555666678899999999999875 45544333 3456778899999999999999875 223336
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA-- 441 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-- 441 (600)
.+...|..+|...|+.++...++.++ ...+....-..+-..-....-.+.|.....+-+...|.--..|..+-.-..
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 77888999999999999999999877 444555554555554445555677777777778888876333433333333
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCce
Q 007517 442 SQGRFHDVAELRKNMRKRNVIKPPGC 467 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~~~~~~ 467 (600)
..|++.+..-.++.|....++..|.+
T Consensus 330 eeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred cccchhhhHHHHHHHHHHHHhhcCCc
Confidence 44678888889999987766666654
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=4.8e-09 Score=106.29 Aligned_cols=229 Identities=16% Similarity=0.221 Sum_probs=160.3
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHHc-----CC-CCch-hhHHHHHHHHHHcCCHHHHHhhhhhcCC-------C---
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVRC-----QF-DVDV-YVASVLITMYIKCGELVKGKLIFDNFAS-------K--- 291 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--- 291 (600)
|+..+...|...|+++.|..++...++. |. .|.+ ...+.+...|...+++++|..+|+++.. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555556666666666655555443 11 1121 2223466777888888888887776643 1
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCC--CC
Q 007517 292 -DIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMP-DDV-TLVGVLSACSYTGKVKEGREIFESMKSKYL--VE 361 (600)
Q Consensus 292 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~ 361 (600)
-..+++.|..+|...|++++|..++++..+ .|..+ ... -++.+...|...+.+++|..+++...+.+. +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 135677788888888888888887776543 23222 222 356677788899999999999887665432 12
Q ss_pred CC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Q 007517 362 PK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ--- 424 (600)
Q Consensus 362 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--- 424 (600)
++ ..+|+.|...|...|++++|.+++++. +..+. ...++.|..+|.+.++++.|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 568999999999999999999999877 11222 45678888999999999999999988665
Q ss_pred -cCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 425 -LEPKN---AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 425 -~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
..|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34554 4568889999999999999999988875
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.4e-08 Score=95.25 Aligned_cols=197 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
...+..+...+...|++++|.+.+++..+.. | .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p----------------------------------~~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--P----------------------------------DDYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c----------------------------------ccHHHHHHHHHH
Confidence 3445666666666777777776666665432 2 223334444445
Q ss_pred HHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 347 (600)
|...|++++|.+.|++... .+...+..+...+...|++++|.+.|++.......| ....+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555544332 234455556666666677777777776666532222 223444555566677777777
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+.+.+..+.. +.+...+..+...+...|++++|.+.+++. .. +++...+..+...+...|+.+.|..+.+.+...
T Consensus 155 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 77777766531 234556667777777777777777777765 22 234555556666677777777777777666554
Q ss_pred C
Q 007517 426 E 426 (600)
Q Consensus 426 ~ 426 (600)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.1e-07 Score=93.99 Aligned_cols=272 Identities=14% Similarity=0.089 Sum_probs=156.3
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHH
Q 007517 98 NVISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGL 171 (600)
Q Consensus 98 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~ 171 (600)
++.....-..-+...+++.+..++++...+ +....+..-|..+...|+..+-..+=..++ |..+.+|-++.-.|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 344444455566677888888888888777 444455555667777777665555544454 66778888888888
Q ss_pred HhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH
Q 007517 172 GQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ 248 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 248 (600)
.-.|+.++|++.|.+...-| ...|-.+...|+-.|..++|+..|...-+. ++-..--+.-+.--|...++++.|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHH
Confidence 88888888888888766443 356888888888888888888877666542 11111112222234455666666666
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC--
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS--GV-- 324 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 324 (600)
+|.+..... |.|+.+.+-+.-+.. ..+.+.+|..+|+..... .+
T Consensus 402 Ff~~A~ai~-P~Dplv~~Elgvvay-------------------------------~~~~y~~A~~~f~~~l~~ik~~~~ 449 (611)
T KOG1173|consen 402 FFKQALAIA-PSDPLVLHELGVVAY-------------------------------TYEEYPEALKYFQKALEVIKSVLN 449 (611)
T ss_pred HHHHHHhcC-CCcchhhhhhhheee-------------------------------hHhhhHHHHHHHHHHHHHhhhccc
Confidence 666655543 444444444443333 344555555555544310 00
Q ss_pred -C-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 007517 325 -M-PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGS 401 (600)
Q Consensus 325 -~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 401 (600)
+ --..+++.|..+|.+.+.+++|...+++.... .+.+..+++++.-.|...|+++.|.+.|.+. .++||..+-..
T Consensus 450 e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 450 EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 0 11223444455555555555555555554432 2334555555555555555555555555544 44555444444
Q ss_pred HHH
Q 007517 402 LLG 404 (600)
Q Consensus 402 ll~ 404 (600)
+++
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 443
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.09 E-value=1.2e-06 Score=87.92 Aligned_cols=170 Identities=9% Similarity=0.099 Sum_probs=126.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhc
Q 007517 68 VVAQTNMVLGYCQDGRVDEGREIFDEMPK-----KNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQ 142 (600)
Q Consensus 68 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~ 142 (600)
+..|-.-+....++|++...+..|+.... .....|...+......|-++.++.++++..+.++..-..-+..++.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 46788888888899999999999987654 2345688888888888999999999999988555557778888899
Q ss_pred CCChHHHHHHHhhCC----------CCCccchhHHHHHHHhcCCH---HHHHHHHHhcccC----ChhhHHHHHHHHHHc
Q 007517 143 CGRIQDAWELFKAMP----------MKSVVASNSMILGLGQNGEV---QKARVVFDQMREK----DDATWSGMIKVYERK 205 (600)
Q Consensus 143 ~g~~~~a~~~~~~~~----------~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~----~~~~~~~li~~~~~~ 205 (600)
.+++++|.+.+..++ +.+-..|.-+-+..+++-+. -....+++.+..+ -...|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 999999999998888 33344566666665554432 2334556665543 245799999999999
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 239 (600)
|.+++|-++|++..+.- .+..-|+.+.++|+.
T Consensus 262 g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred hhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 99999999999887652 334445555555543
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=2e-08 Score=106.56 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=163.7
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH---------cCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK---------CGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL 308 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 308 (600)
+++++|...+++.++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45788999999998865 3345566666655542 2448899999988765 477889999899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
+++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+. .|+ ...+..++..+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999885 565 446777788899999999999999999874 454 33334455567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 387 IEAM--PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 387 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+++. ...|+ +..+..+..++...|+.++|...++++....|.+......+...|...| ++|...++.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9877 22354 4457777788889999999999999998888887777777888888888 4888877777653
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=3e-08 Score=96.32 Aligned_cols=211 Identities=14% Similarity=0.098 Sum_probs=145.6
Q ss_pred cchHHHHHHHHHHHHcC-CCC--chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHH
Q 007517 241 ASLDHGRQVHAQLVRCQ-FDV--DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
+..+.+..-+.+++... +.| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44566666666666532 122 235577777888999999999999887654 467889999999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 007517 315 VFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--P 391 (600)
Q Consensus 315 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~ 391 (600)
.|++..+. .|+ ..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99998874 565 456777777888889999999999988764 354332222233345677899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 392 FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLL-------QLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 392 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..|+...| . ......|+...+ ..++.+. ++.|+.+..|..++.+|...|++++|...|++..+.+
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 1 222334554433 2333333 3455666789999999999999999999999887654
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=2e-07 Score=95.27 Aligned_cols=384 Identities=13% Similarity=0.048 Sum_probs=229.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcc-hHHHHH
Q 007517 66 KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEV-SWTAML 137 (600)
Q Consensus 66 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~-t~~~ll 137 (600)
.|...|..|.-+..++|+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-.. |+.. .+...-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4667777777778888888888888887654 3445688888888888888888888776554 3222 233333
Q ss_pred HHHh-cCCChHHHHHHHhhCC--------CCCccchhHHHHHHHhcC-----------CHHHHHHHHHhcccC---Chhh
Q 007517 138 MGYT-QCGRIQDAWELFKAMP--------MKSVVASNSMILGLGQNG-----------EVQKARVVFDQMREK---DDAT 194 (600)
Q Consensus 138 ~~~~-~~g~~~~a~~~~~~~~--------~~~~~~~~~li~~~~~~g-----------~~~~A~~~f~~~~~~---~~~~ 194 (600)
..|. +.+..+++..+-.+++ ...+..+-.+.-+|...- ...++.+.+++..+. |+.+
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 3455555555444443 122233333333333221 123455555555432 2222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLITMYI 273 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~ 273 (600)
.--+.--|+..++.+.|++..++...-+-.-+...+..+.-.+...+++..|..+.+..... |.. -.....-+..-.
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchhhhhhhh
Confidence 22233345666777777777777777655556666666666677777777777776655432 210 000000011111
Q ss_pred HcCCHHHHHhh--------------------------hhhcCC-----CC-HHHHHHHHHHHHhcC---ChHHHHHHHHH
Q 007517 274 KCGELVKGKLI--------------------------FDNFAS-----KD-IVMWNSIISGYAQYG---LGEKSLKVFHE 318 (600)
Q Consensus 274 ~~g~~~~A~~~--------------------------~~~~~~-----~~-~~~~~~li~~~~~~g---~~~~A~~~~~~ 318 (600)
..++.++|... +..+.- .| +.++..+..-....+ .++..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------ 632 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------ 632 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------
Confidence 12232222211 111110 01 112221111111000 01111
Q ss_pred HHHCCCCCCHH--------HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 319 MFSSGVMPDDV--------TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 319 m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...-+.|... .+......+...+..++|...+.+..+. .+.....|.-....+...|.+++|.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 11111222221 2334455677888889998888777653 2445777888888999999999999999877
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 391 -PFEPD-AIIWGSLLGACRTHMKLDLAEV--AAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 391 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+.|+ +.+..++...+.+.|+...|.. ++..+++++|.++..+..|+.++-+.|+.++|.+.|....+.
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 66776 6688899999999999998888 999999999999999999999999999999999999988754
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.1e-07 Score=83.50 Aligned_cols=434 Identities=12% Similarity=0.030 Sum_probs=207.5
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCC----cchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChH
Q 007517 13 VRGYVEEGMITEAGTLFWQMPEKN----VVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVD 85 (600)
Q Consensus 13 l~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 85 (600)
+.-+..++++..|+.+++.-...+ ..+--.+...+...|++++|...+..+. .++...|-.|...+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344455566666666665544111 1122223445556667777766666554 233444555555555556666
Q ss_pred HHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCCccc
Q 007517 86 EGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVA 163 (600)
Q Consensus 86 ~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~ 163 (600)
+|..+-.+.++ ++..-..|+..-.+.++-++-+.+-..+.... .--.++.+..-..-.+++|..++..+. .++...
T Consensus 109 eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 66666554443 12222223333334444444444433333210 111122222222334555666666555 222222
Q ss_pred hhH-HHHHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHh-
Q 007517 164 SNS-MILGLGQNGEVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA- 238 (600)
Q Consensus 164 ~~~-li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~- 238 (600)
.|. +.-+|.+..-++-+.++++--.. | ++..-|.......+.=....|.+-.+++.+.+-. .+.+ .-..|-
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f--~~~l~rH 262 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPF--IEYLCRH 262 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchh--HHHHHHc
Confidence 222 22245555555555544433321 1 2333333333333322222222222333222110 0001 000010
Q ss_pred ---hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 007517 239 ---SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGL------- 308 (600)
Q Consensus 239 ---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~------- 308 (600)
--.+-+.|.+++--+.+. -| ..--.|+-.|.+.+++++|..+..++....+.-|-.-.-.++..|+
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 011223344443333321 11 2223456668888999999888888766544433322222333332
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
..-|.+.|+-.-+.+..-|.+. --++.+++.-..++++..-++.++..- -...|...+ .+.+++...|.+.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 3334444443333333333221 222333344445678888888877763 233344444 4778888888888888888
Q ss_pred HhCC-CC-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 388 EAMP-FE-PDAIIWGSLL-GACRTHMKLDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 388 ~~m~-~~-p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
-.+. .+ .|..+|.+++ .+|.+.+.++.|..++-++ -.|.+ ......+++-|.+++.+=-|.+.|..+....
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 7772 11 3556665555 4556677887776654332 22322 2334457788888888888888888776543
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.8e-06 Score=79.35 Aligned_cols=380 Identities=11% Similarity=0.007 Sum_probs=233.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhCCChH-HHHHHHhhcCCCCcchHHHHHHHHhcC--CCh
Q 007517 71 QTNMVLGYCQDGRVDEGREIFDEMPKK-NVISWTTMISGYVNNNRID-VARKLFEVMPEKNEVSWTAMLMGYTQC--GRI 146 (600)
Q Consensus 71 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~p~~~t~~~ll~~~~~~--g~~ 146 (600)
-..++..|-..++-++|...+.+.+.. ....-|.|+.-+.+.|.-. ++.--+.+....-+.... .|.+..+. ...
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~-~i~~ll~l~v~g~ 178 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQ-VIEALLELGVNGN 178 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHH-HHHHHHHHhhcch
Confidence 345677888889999999988888763 3334455555554444322 222112221110011111 11111111 011
Q ss_pred HHHHHHHhhCC-CCCccchhHHHHHHHh--cCCHHHHHHHHHhcc-----cCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 007517 147 QDAWELFKAMP-MKSVVASNSMILGLGQ--NGEVQKARVVFDQMR-----EKDDATWSGMIKVYERKGYELEVIDLFTLM 218 (600)
Q Consensus 147 ~~a~~~~~~~~-~~~~~~~~~li~~~~~--~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 218 (600)
+.+--....+. ++........+.+|+. .++-..|...|-.+. ..|+.....+...+...|+.++|...|++.
T Consensus 179 e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 179 EINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 11111111111 3333333344454444 344444444433322 237788899999999999999999999988
Q ss_pred HHcCCccCchhH-hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHH
Q 007517 219 QKEGVRVNFPSL-ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIV 294 (600)
Q Consensus 219 ~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 294 (600)
+.. .|+..+- -...-.+...|+++....+...+.... +.+..-|-.-........+.+.|+.+-++... +++.
T Consensus 259 ~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~ 335 (564)
T KOG1174|consen 259 LCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE 335 (564)
T ss_pred hhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch
Confidence 763 3443321 111222345667776666655554432 11111121222233445678888888777655 3444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH-H
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV-D 372 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li-~ 372 (600)
.+-.-...+.+.|++++|.-.|+..+. +.| +-..|..|+.+|...|...+|.-.-+...+. ++.+..+.+.+. +
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 554445678889999999999999876 454 5568999999999999999998877766553 344555555442 3
Q ss_pred HHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 373 LLGR-AGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 373 ~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
.+.- ----++|.+++++. .++|+ ....+.+...|...|..+.+..++++.+...|+. .....|+..+...+.+.+|
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred eeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHH
Confidence 3322 22357889999877 67787 4456777778899999999999999999999987 7889999999999999999
Q ss_pred HHHHHHHHhC
Q 007517 450 AELRKNMRKR 459 (600)
Q Consensus 450 ~~~~~~m~~~ 459 (600)
...|......
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 9999877653
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.99 E-value=1.9e-06 Score=88.47 Aligned_cols=391 Identities=11% Similarity=0.073 Sum_probs=250.1
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC----CCccc-HHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK----KNVIS-WTTM 105 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~l 105 (600)
..|...|..|.-+...+|++..+-+.|++... .....|+.+-..|...|.-..|..++++-.. |+..+ +-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 46888999999999999999999999998763 3456789999999999999999999987654 22222 2222
Q ss_pred HHHHHh-CCChHHHHHHHhhcCC--------CCcchHHHHHHHHhcC-----------CChHHHHHHHhhCC---CCCcc
Q 007517 106 ISGYVN-NNRIDVARKLFEVMPE--------KNEVSWTAMLMGYTQC-----------GRIQDAWELFKAMP---MKSVV 162 (600)
Q Consensus 106 i~~~~~-~g~~~~A~~~~~~m~~--------p~~~t~~~ll~~~~~~-----------g~~~~a~~~~~~~~---~~~~~ 162 (600)
-..|.+ .+..+++++.-.+... ..+..|..+.-+|... ....++.+.+++.+ +.|+.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 233332 3555565555444332 3334444444444321 11345666777775 55555
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhccc----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHH
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMRE----KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVC 237 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 237 (600)
+---+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+.....- |+ ..-...-+..-
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhh
Confidence 555555668889999999988877653 378899999999999999999999988766541 11 00000001111
Q ss_pred hhhcchHHHHHH-------HH----------HHHH----cCC-------CCchhhHHHHHHHHH---HcCCHHHHHhhhh
Q 007517 238 ASLASLDHGRQV-------HA----------QLVR----CQF-------DVDVYVASVLITMYI---KCGELVKGKLIFD 286 (600)
Q Consensus 238 ~~~~~~~~a~~~-------~~----------~~~~----~~~-------~~~~~~~~~li~~y~---~~g~~~~A~~~~~ 286 (600)
...++.+++... ++ +... .|. ...+.++..+..... +.-..+..+..+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 112222222211 11 1111 111 111222222222111 1111111222222
Q ss_pred hcCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 287 NFASKD------IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 287 ~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
..+.++ ...|......+...++.++|...+.+.... .|- ...|...-..+...|..++|.+.|.....
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--- 712 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--- 712 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---
Confidence 222333 245667778888999999999888887653 343 33454444566778999999999988765
Q ss_pred CCCC-hHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 360 VEPK-TEHYACMVDLLGRAGQVEDAMK--LIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 360 ~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
+.|+ +...+++..++.+.|+..-|.. ++..+ .+.| +...|..|...+.+.|+.+.|...|..+.++++.+|.
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 4565 7788999999999998777777 77776 5555 6889999999999999999999999999999887764
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=1.9e-07 Score=90.84 Aligned_cols=215 Identities=13% Similarity=0.000 Sum_probs=138.5
Q ss_pred ChHHHHHHHHHHHHcC-CccC--chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 207 YELEVIDLFTLMQKEG-VRVN--FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
..+.++.-+.++.... ..|+ ...|......+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554321 1111 1234444445556666666666666666654 4456788888888888999999988
Q ss_pred hhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCC
Q 007517 284 IFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360 (600)
Q Consensus 284 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 360 (600)
.|+...+ .+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|...... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 8887754 35678888888899999999999999998874 555432222222344567899999999765542 2
Q ss_pred CCChHHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 361 EPKTEHYACMVDLLGRAGQVED--AMKLIEAM-PF----EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.|+...+ .++..+ .|++.+ +.+.+.+. .. .| ....|..+...+.+.|++++|...|+++++.+|.+
T Consensus 196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 3333222 333333 444433 33333321 11 12 23578999999999999999999999999999754
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.96 E-value=7.1e-08 Score=84.79 Aligned_cols=163 Identities=17% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
+...|.-+|.+.|+...|.+-+++.++. .|+. .++..+...|.+.|..+.|.+-|+...+.. +.+-.+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHH
Confidence 3455677899999999999999999885 5665 478888889999999999999999987632 3457888999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 374 LGRAGQVEDAMKLIEAMPFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
++..|++++|...|++.-..| -..+|..+..+..+.|+.+.|...+++.++.+|+.+.+...++......|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999882233 2567888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 007517 450 AELRKNMRKRNV 461 (600)
Q Consensus 450 ~~~~~~m~~~g~ 461 (600)
..+++.....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887654
No 76
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=1.6e-06 Score=87.86 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=23.5
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhC
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAM 156 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 156 (600)
.|..|.+.|.+..|......=.. .|......+..++.+..-+++|-.+|+.+
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 34556666665555543321111 34444444444444444444444444443
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.94 E-value=1.4e-07 Score=95.72 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=116.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC----------CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS----------KDI-VMWNSIISGYAQYGLGEKSLKVFHEMFSS---GVMPDD 328 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~ 328 (600)
.+++.|..+|.+.|++++|...+++..+ +.+ ...+.++..+...+++++|..+++...+. -..++.
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 3445555667777777776666654321 222 23566677788888899998888875431 133333
Q ss_pred ----HHHHHHHHHHhccCCHHHHHHHHHHhHhcC----C-CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------
Q 007517 329 ----VTLVGVLSACSYTGKVKEGREIFESMKSKY----L-VEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-------- 390 (600)
Q Consensus 329 ----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 390 (600)
.+++.+-..+.+.|++++|.++|+++.... + ..+ .-..++.|...|.+.+++++|.++|.+.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g 443 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCG 443 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhC
Confidence 368888889999999999999998876532 1 112 2456788899999999999999998875
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 391 PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 391 ~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+-.|+ ..+|..|...|...|+++.|+++.+++..
T Consensus 444 ~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 444 PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 33455 45799999999999999999999998774
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=5.5e-08 Score=89.38 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=148.4
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
+-+..+|.+.|-+.+|.+.|+...+ +-+.||-.|-++|.+-.+++.|+.+|.+-.+. .|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l----------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL----------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh-----------
Confidence 3466677777777777777766543 35666666777777777777777777665543 34444442
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 319 (600)
......+-..++.++|.++|+...+ .++.+..++..+|.-.++++-|+.+|+++
T Consensus 294 -----------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 294 -----------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred -----------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 2233333344445555555544432 24555555666777778888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 007517 320 FSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-D 395 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 395 (600)
.+.|+. +...|..+--+|.-.++++-+..-|++..... -.|+ .++|-.+.......|++.-|.+-|+-. ...| +
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlsta-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTA-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 887753 44556666667777788888887777766532 1233 566777888888888888888888765 2233 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
...++.|.-.-.+.|+++.|..++..+....|+-
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 5677777777778888888888888888877764
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.94 E-value=6.4e-08 Score=88.95 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=169.7
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+.+.|.+.+|...+....+. .|.+.+|-.|-..|.+..+.+.|+.+|.+..+ | |+....-+...+-..++.++|.
T Consensus 233 ylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~ 310 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDAL 310 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHH
Confidence 33334444444433333333 23444566677778888888888888877655 3 4444455667777889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--- 390 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 390 (600)
++|+...+.. ..|.....++...|.-.++.+.|..++.++..- |+ .+++.|+.+.-.+.-.+++|-++.-|++.
T Consensus 311 ~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 311 QLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 9999998752 334446666677788889999999999999874 64 67889999999999999999999988876
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 391 PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 391 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.-.|+ ..+|..|.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|+.++...++..
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 22344 56799998888899999999999999999999999999999999999999999999999887654
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.85 E-value=1.6e-07 Score=90.03 Aligned_cols=248 Identities=15% Similarity=0.082 Sum_probs=150.5
Q ss_pred HHhcCCHHHHHHHHHhcccC----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 171 LGQNGEVQKARVVFDQMREK----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
+.-.|.+..++.-.+ .... +.....-+.++|...|+++.++.- .... -.|....+..+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~e---i~~~-~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSE---IKKS-SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHH---S-TT-SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHH---hccC-CChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2111 233445566778888887765433 2222 255655555555555443444444
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 247 RQVHAQLVRCQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 247 ~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
..-+......... .+..+......+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4333333222222 23333344445677789999999998876 56666677788899999999999999999863 3
Q ss_pred CCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007517 326 PDDVTLVGVLSACS----YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIW 399 (600)
Q Consensus 326 p~~~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 399 (600)
.|. +...+..++. ....+.+|..+|+++..++ .+++.+.+.+.-+....|++++|.+++++. ...| ++.+.
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 443 3444444432 2346888888888887754 567778888888888888888888888765 3233 45566
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHhccCCCCC
Q 007517 400 GSLLGACRTHMKL-DLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 400 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~p~~~ 430 (600)
..++......|+. +.+.+...++....|++|
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6677776777776 667778888877888764
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=1.5e-05 Score=82.33 Aligned_cols=254 Identities=17% Similarity=0.203 Sum_probs=156.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
+.-+...|...|++++|+++.++.... .|+ ...|..-...+-+.|++.+|....+...+.. ..|.++-+..+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355677788899999999999988876 465 4466777888889999999999999998876 567888888899999
Q ss_pred HcCCHHHHHhhhhhcCCCC------H----HHH--HHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC------------
Q 007517 274 KCGELVKGKLIFDNFASKD------I----VMW--NSIISGYAQYGLGEKSLKVFHEMFSS--GVMPD------------ 327 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~------~----~~~--~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~------------ 327 (600)
++|++++|.+++.....++ . ..| .....+|.+.|++..|++.|....+. .+.-|
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999887766543 1 234 33467889999999998877665432 11222
Q ss_pred -HHHHHHHHHHHhccCC-------HHHHHHHHHHhHhcCCCCC-----------ChHHHHHHHHHH---hhcCCHHHHHH
Q 007517 328 -DVTLVGVLSACSYTGK-------VKEGREIFESMKSKYLVEP-----------KTEHYACMVDLL---GRAGQVEDAMK 385 (600)
Q Consensus 328 -~~t~~~ll~a~~~~g~-------~~~a~~~~~~~~~~~~~~p-----------~~~~~~~li~~~---~~~g~~~~A~~ 385 (600)
..+|..+|...-+... ...|.+++-.+........ +..--..+..-- .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2233333332221111 1234444444332210000 000001111000 11111111211
Q ss_pred HHH-----------hC----C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 386 LIE-----------AM----P--FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 386 ~~~-----------~m----~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
.-. .. + ..||+.- ..|+ ....-.++|.++++-+.+..|++..++..-..+|.+.|++--
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LL 509 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLL 509 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHH
Confidence 110 00 1 1122221 1122 233467889999999999999999999999999999999988
Q ss_pred HHHHHHH
Q 007517 449 VAELRKN 455 (600)
Q Consensus 449 a~~~~~~ 455 (600)
|.+.+++
T Consensus 510 aLqaL~k 516 (517)
T PF12569_consen 510 ALQALKK 516 (517)
T ss_pred HHHHHHh
Confidence 8876653
No 82
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=1.2e-07 Score=94.06 Aligned_cols=218 Identities=14% Similarity=0.146 Sum_probs=171.8
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
.+.|++..|.-.|+..++.. |.+...|.-|...-...++-..|...+.+..+ .|....-+|.-.|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888888776 56778888888888888888888888877654 467778888888999999899999
Q ss_pred HHHHHHHCCCCCCHHHHHH--------HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 315 VFHEMFSSGVMPDDVTLVG--------VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 315 ~~~~m~~~g~~p~~~t~~~--------ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
.++.-+... |...-... .-........+....++|-.+....+..+|++++.+|.-+|--.|.+++|..-
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998876532 11110000 00122223345556667777766656668899999999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 387 IEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 387 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|+.. .++| |..+||-|...+....+.++|+..|.+++++.|.-......|+-.|...|.++||.+.|-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 6677 5778999999999999999999999999999999999999999999999999999998877654
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=5.8e-06 Score=77.16 Aligned_cols=396 Identities=11% Similarity=0.051 Sum_probs=242.6
Q ss_pred HHHHcCCCHHHHHHHHccCCCC------CcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCCh
Q 007517 45 GGFIRDSRIDDARRLFDMMPEK------DVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRI 115 (600)
Q Consensus 45 ~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~ 115 (600)
.-+....++..|+.+++.-... +...| +...+.+.|++++|...+.-+.+ ++...|-.|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3344566777788777655411 22222 34566788999999998886554 5666777787777778888
Q ss_pred HHHHHHHhhcCCCCcchHH-HHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccC--Ch
Q 007517 116 DVARKLFEVMPEKNEVSWT-AMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREK--DD 192 (600)
Q Consensus 116 ~~A~~~~~~m~~p~~~t~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~ 192 (600)
.+|..+-... |+..... .++....+.++-++-.++++.+.+.. .-.-+|..+....-.+.+|++++.++... +-
T Consensus 108 ~eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 108 IEAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 8888776554 4444333 34455567788888888887776222 22234555544455688999999988754 44
Q ss_pred hhHHHH-HHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHH--hhhcchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 193 ATWSGM-IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC--ASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 193 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
...|.- .-.|.+..-++-+.+++.--.+. .||+ |+..=+.+| .+.=+-..|.+-...+.+.+-.. -..+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~ 256 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFI 256 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhH
Confidence 445543 34667788888888887776654 3443 333333344 33322233333333443332111 0112
Q ss_pred HHHHHc-----CCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----h
Q 007517 270 TMYIKC-----GELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC-----S 339 (600)
Q Consensus 270 ~~y~~~-----g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-----~ 339 (600)
.-.++. .+-+.|++++-.+...=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+- .
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcC
Confidence 222221 2335666666544433333444566678899999999999887642 345555444444332 1
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAMP--FEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
....++-|.+.|+..-+. +..-| +.--.++...+.-..++|+.+-.++... +..|...--.+..+.+..|++.+|+
T Consensus 335 SreHlKiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHH
Confidence 122356677777755332 33322 3334456666666678888888887762 3344444455788999999999999
Q ss_pred HHHHHHhccCCCCCchHH-HHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQLEPKNAGPYI-LLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m 456 (600)
++|-+....+-.+..+|. .|+..|.+.|+.+-|+.++-++
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 999888777644445554 5889999999999999876654
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=6.4e-06 Score=76.62 Aligned_cols=304 Identities=16% Similarity=0.145 Sum_probs=180.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHH---HHHhcCCChHHHHHHHhhCCCCCccchhHH---HHHHHhcCC
Q 007517 103 TTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAML---MGYTQCGRIQDAWELFKAMPMKSVVASNSM---ILGLGQNGE 176 (600)
Q Consensus 103 ~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l---i~~~~~~g~ 176 (600)
--+.+.+...|++..|+.-|....+.|+..|.++. ..|...|+-..|..-+..+++.-+..+.+- ...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34667777788888888888888885555554443 356667777777777777663222222222 235677888
Q ss_pred HHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc
Q 007517 177 VQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC 256 (600)
Q Consensus 177 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 256 (600)
++.|..-|+.+.+.++.- +....++.+.-..++-. .....+......|+...++.....+++.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 888888887776533210 01111111111111111 1222334445567888888888888876
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhh---cCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDN---FASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 333 (600)
. +.|...+..-..+|...|++..|..=+.. +...+.....-+-..+...|+.+.++...++-.+ +.||......
T Consensus 185 ~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 Q-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFP 261 (504)
T ss_pred C-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHH
Confidence 4 67888888888999999999988765543 4456777777777888889999999988888876 5777642111
Q ss_pred ----H---H------HHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 334 ----V---L------SACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 334 ----l---l------~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
| . ......+.+.++.+-.+...+. .|. ...+..+-..|...|++.+|++...+. .+.|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~ 338 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCc
Confidence 1 0 1112234444444444444332 222 122333444555566666666666555 4445
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 395 D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 395 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
| +.++.--..+|.....++.|+.-|+++.+.+|++
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 4 4455555566666666666666666666666665
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=2.4e-05 Score=79.70 Aligned_cols=402 Identities=14% Similarity=0.147 Sum_probs=190.7
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccC--CCCCcchHHHHHHHHHhcCChHHHH
Q 007517 11 AMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMM--PEKDVVAQTNMVLGYCQDGRVDEGR 88 (600)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~~~A~ 88 (600)
+.++++...|+-++|-++-. .|-. --+.|+.|.+.|....|.+.-..= ...|......+..++.+..-+++|-
T Consensus 594 sy~q~l~dt~qd~ka~elk~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkag 668 (1636)
T KOG3616|consen 594 SYLQALMDTGQDEKAAELKE----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAG 668 (1636)
T ss_pred HHHHHHHhcCchhhhhhhcc----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhh
Confidence 45666677777777765422 2222 234567788888877776643221 1234444445555555555666666
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchH-HHHHHHHhcCCChHHHHHHHhhCCCCCccchhHH
Q 007517 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSW-TAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM 167 (600)
Q Consensus 89 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 167 (600)
.+|+++..++- .+..|-+-.-+-+|+++-+-.-....++. ..-..-+...|+++.|..-|-+.. -.-.-
T Consensus 669 dlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~ka 738 (1636)
T KOG3616|consen 669 DLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKA 738 (1636)
T ss_pred hHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHH
Confidence 66766655332 22222222223344443222111000110 001111122233333333222111 00011
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhh--HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDAT--WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
|.+.....++.+|+.+++.+.++++.+ |..+..-|+..|+++.|.++|-+. ..+.-.+..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 222333344444444444444333222 333344444444444444444321 112233344444444444
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
|.++-... .|.......|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-++|..++.+++..+- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----C
Confidence 44332222 122233334444444455566777777777666666543 56677777777777666653 2
Q ss_pred CCH--HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CCHHHH
Q 007517 326 PDD--VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE----PDAIIW 399 (600)
Q Consensus 326 p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~ 399 (600)
|+. .|-..+..-+...|+++.|...|-+.. -|.+-+.+|...+.|++|.++-+.-+-. .-...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 332 244444555566677777766654432 2445666777777777777766544201 012223
Q ss_pred HHHH------HHHHHcCCHHHHHH-------------HHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 400 GSLL------GACRTHMKLDLAEV-------------AAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 400 ~~ll------~~~~~~g~~~~a~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.--+ ..+-++|-.+.|.. +.+-..+ -..+.....++.-+...|++++|.+-+-+..+.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 2222 22334444444433 3322222 2233566777778888999999987776666543
No 86
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=1.1e-07 Score=91.09 Aligned_cols=246 Identities=10% Similarity=0.061 Sum_probs=159.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV 279 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 279 (600)
+-+.-.|++..++.-.+ ........+..+...+.+++..+|..+.+ ...+.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44555788888886555 22222122334455667777777876543 33443333 555555555544443334555
Q ss_pred HHHhhhhhcCC-C---CHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 280 KGKLIFDNFAS-K---DIVMWNSI-ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 280 ~A~~~~~~~~~-~---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
.+..-+++... + +..++..+ ...+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544332 2 12222222 23456679999999988752 34556666788899999999999999999
Q ss_pred HhcCCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 355 KSKYLVEPKTEH---YACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 355 ~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+. ..|... ..+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..++...|++++|+.+++++++.+|++
T Consensus 158 ~~~---~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 158 QQI---DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp HCC---SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred Hhc---CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 753 344322 233333333345799999999999 445788899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 007517 430 AGPYILLSNIYASQGRF-HDVAELRKNMRKR 459 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 459 (600)
+.+...++-+....|+. +.+.+++..+++.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6677888887753
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=2.7e-06 Score=75.00 Aligned_cols=193 Identities=12% Similarity=0.017 Sum_probs=125.3
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK 311 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 311 (600)
-.+...|+...|+.-++..++.. +.+..++..+...|.+.|+.+.|.+.|++... .+-...|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34444455555555555555443 33455566666667777777777777765443 355566666667777778888
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 312 SLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+. .+..+.....+.+...+.|++-.|..+++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 8888877776432222 346666666667778888888888777653 1233556667777777888888888777766
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 391 --PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 391 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
...++..+.-..|..-...||.+.+-+.-.++....|..+
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2346666666666667777888877777777777777663
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.76 E-value=1.2e-05 Score=81.13 Aligned_cols=293 Identities=11% Similarity=-0.062 Sum_probs=160.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhccc---CChh---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch-hHhhHHHH
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMRE---KDDA---TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP-SLISVLSV 236 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~ 236 (600)
+..+...+...|+.+++.+.+..... ++.. ........+...|++++|.+.+++.... .|+.. .+.. ...
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~ 85 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHH
Confidence 34444555555666555544444331 1111 1222233456677788888877777664 23322 2221 112
Q ss_pred Hhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh
Q 007517 237 CAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG 309 (600)
Q Consensus 237 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 309 (600)
+.. .+....+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 2333444443333 1111122233444555677788888888888877654 3556677777888888888
Q ss_pred HHHHHHHHHHHHCCC-CCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-H--HHHHHHhhcCCHHHH
Q 007517 310 EKSLKVFHEMFSSGV-MPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY-A--CMVDLLGRAGQVEDA 383 (600)
Q Consensus 310 ~~A~~~~~~m~~~g~-~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A 383 (600)
++|+.++++...... .|+.. .+..+...+...|+.++|..+++.........+..... + .+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 888888887765421 12221 23456666777888888888888765321111211111 1 233333444433322
Q ss_pred HHH---HHhC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-C---C-----CCchHHHHHHHHHhcCCch
Q 007517 384 MKL---IEAM-PFEP---DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE-P---K-----NAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 384 ~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~~~ 447 (600)
.+. .... +..| ..........++...|+.+.|...++.+.... . . ........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111 1001 12222345666778889999999888876532 1 1 2344566777888999999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|.+.+......+
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887654
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=2.3e-05 Score=89.58 Aligned_cols=353 Identities=11% Similarity=0.023 Sum_probs=219.5
Q ss_pred HHHhCCChHHHHHHHhhcCCCCc--chHHHHHHHHhcCCChHHHHHHHhhCC----CCCccchhHHHHHHHhcCCHHHHH
Q 007517 108 GYVNNNRIDVARKLFEVMPEKNE--VSWTAMLMGYTQCGRIQDAWELFKAMP----MKSVVASNSMILGLGQNGEVQKAR 181 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~ 181 (600)
.+...|++.+|.........++. .............|+++.+...+..+. ..++.........+...|++++|.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 34445555555554444433111 111122233445677887777777664 233444445556667889999998
Q ss_pred HHHHhccc----CC---h-----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc----hhHhhHHHHHhhhcchHH
Q 007517 182 VVFDQMRE----KD---D-----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF----PSLISVLSVCASLASLDH 245 (600)
Q Consensus 182 ~~f~~~~~----~~---~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~ 245 (600)
..++.... .+ . .....+...+...|++++|...+++....-...+. .....+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88876532 11 1 11122334566899999999999987763111121 223444455667899999
Q ss_pred HHHHHHHHHHc----CCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-------C----CHHHHHHHHHHHHhcCCh
Q 007517 246 GRQVHAQLVRC----QFD-VDVYVASVLITMYIKCGELVKGKLIFDNFAS-------K----DIVMWNSIISGYAQYGLG 309 (600)
Q Consensus 246 a~~~~~~~~~~----~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~ 309 (600)
|...+...... |.. ........+...+...|+++.|...+++... + ....+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 99988887653 211 1123455667788889999999998876432 1 123344555667778999
Q ss_pred HHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH-----HHHHHHHhhcCCH
Q 007517 310 EKSLKVFHEMFSSG--VMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY-----ACMVDLLGRAGQV 380 (600)
Q Consensus 310 ~~A~~~~~~m~~~g--~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~li~~~~~~g~~ 380 (600)
++|...+++..... ..|. ...+..+.......|+.++|.+.++..............+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 99999998875531 1222 2234445556778899999999988875421111111111 1123445668999
Q ss_pred HHHHHHHHhCCC-C-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCCchH
Q 007517 381 EDAMKLIEAMPF-E-PDA----IIWGSLLGACRTHMKLDLAEVAAKKLLQLE------PKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 381 ~~A~~~~~~m~~-~-p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
+.|.+.+..... . ... ..+..+..++...|+.++|...++++.... +....++..++.+|...|+.++
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999877621 1 111 124456677888999999999999988742 1123457778899999999999
Q ss_pred HHHHHHHHHhCC
Q 007517 449 VAELRKNMRKRN 460 (600)
Q Consensus 449 a~~~~~~m~~~g 460 (600)
|...+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=1.1e-05 Score=73.64 Aligned_cols=405 Identities=11% Similarity=0.054 Sum_probs=187.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHH-HHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMPEKDV---VAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTT-MISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~-li~~~~~~g 113 (600)
+.+.+..+.+..++.+|++++..-.++++ ...+.|...|-...++..|-.-++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 34444445555666666666554443332 2233444555555566666665555443 22222211 123344555
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHH--HhcCCChHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHHHHhccc
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMG--YTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~--~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 189 (600)
.+..|+.+...|.. |+...-..-+.+ .-..+++..++.+.++.. +.+..+.+...-...+.|+.+.|.+-|+...+
T Consensus 93 i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlq 172 (459)
T KOG4340|consen 93 IYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQ 172 (459)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHh
Confidence 56666666655554 222211111111 123455555555555554 33333333333344455555555555555443
Q ss_pred C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 190 K----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 190 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
- ....||.-+ +..+.|++..|+++..+..+.|++-.+..=..+..--.....+..-..++... -+..+
T Consensus 173 vsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa-------l~eAf 244 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA-------LVEAF 244 (459)
T ss_pred hcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH-------HHHHh
Confidence 1 233444333 23344555555555555555554321110000000000000000000000000 01223
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
|.-...+.+.|+.+.|.+.+..|+.+ |++|...+.-.= ..+++.+..+-+.-+.+.+ +-...||..++-.|++
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhh
Confidence 33344567889999999999999864 666665543222 2344445555455455443 2345689999999999
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCHHHH---
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVEDAMKLIEAMPFEPDAIIWGSLLGA-CRTHMKLDLA--- 415 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~p~~~~~~~ll~~-~~~~g~~~~a--- 415 (600)
..-++.|-.++.+-....---.+...|+ |++++.- .-..++|.+-++.+.-.-....-..-+.. -.++.+-+.+
T Consensus 323 Neyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ 401 (459)
T KOG4340|consen 323 NEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRK 401 (459)
T ss_pred hHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 9888888888754321100011233343 3444433 34567776665544100000000001111 1112222222
Q ss_pred -HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 416 -EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 416 -~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..-+++.+++-- .....-++.|.+..++..+.++|..-.+
T Consensus 402 ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 402 AVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 222333333211 2344567778888999999999887654
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.70 E-value=7.7e-05 Score=75.47 Aligned_cols=377 Identities=14% Similarity=0.139 Sum_probs=193.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHh
Q 007517 38 VSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVN 111 (600)
Q Consensus 38 ~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~ 111 (600)
+.|..+.-.+-...++++|.+.|.... +.|...|.-|.-.=++.|+++.....-....+ .....|..+.-++.-
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL 155 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 334444333334444555555544433 22333343333333333333333322222211 233456666666666
Q ss_pred CCChHHHHHHHhhcCC-----CCcchHHHHH------HHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCH
Q 007517 112 NNRIDVARKLFEVMPE-----KNEVSWTAML------MGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEV 177 (600)
Q Consensus 112 ~g~~~~A~~~~~~m~~-----p~~~t~~~ll------~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 177 (600)
.|+...|..+++...+ |+...+.... ......|.++.|.+.+.... ......--.-.+.+.+.+++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 6777777777666554 4444333222 22345566666666555444 11112222345566777777
Q ss_pred HHHHHHHHhcccC--ChhhHHHHH-HHHHHcCChHHHH-HHHHHHHHcCCccCchh-HhhHHHHHhhhcchHHHHHHHHH
Q 007517 178 QKARVVFDQMREK--DDATWSGMI-KVYERKGYELEVI-DLFTLMQKEGVRVNFPS-LISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 178 ~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
++|..++..+..+ |..-|+... .++.+-.+.-+++ .+|....+. .|-... -..=++......-.+....++..
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHH
Confidence 7777777777654 333333333 3332233333333 445444332 111100 00011111112223334455566
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHH----HHhhhhhc--------------CCCCHHHHH--HHHHHHHhcCChHHH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVK----GKLIFDNF--------------ASKDIVMWN--SIISGYAQYGLGEKS 312 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~--------------~~~~~~~~~--~li~~~~~~g~~~~A 312 (600)
..+.|+++ ++..+...|-.-...+- +..+...+ ..|....|+ -++..|-..|+++.|
T Consensus 314 ~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 66666553 23333333322111110 11111111 123444454 467788899999999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007517 313 LKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP 391 (600)
Q Consensus 313 ~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (600)
..+.+..... .|+.+ -|..=.+.+.+.|++++|..++++..+- -.||...-+--+.-..|+.+.++|.++.....
T Consensus 391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL--DTADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 9999998864 77766 3444457788999999999999988763 24565555566777789999999999877661
Q ss_pred CCC-C--------HHHHHHHH--HHHHHcCCHHHHHHHHHHHh
Q 007517 392 FEP-D--------AIIWGSLL--GACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 392 ~~p-~--------~~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 423 (600)
-.. + .-.|-.+- .+|.+.|++.+|++-|..+.
T Consensus 467 r~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 467 REGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 011 1 22355443 45777888888876654443
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=8.6e-05 Score=74.34 Aligned_cols=406 Identities=9% Similarity=0.061 Sum_probs=244.9
Q ss_pred HHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHH--HHH--HHhCCChH
Q 007517 44 LGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTM--ISG--YVNNNRID 116 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l--i~~--~~~~g~~~ 116 (600)
++.+.+.|++++|.+...++. +.|...+..=+-+..+.+.+++|..+.+.-..- .+++.. =.+ +.+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 466778899999999888877 346667777788889999999999877654321 222222 334 45789999
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHH-HHhcCCHHHHHHHHHhcccCChhhH
Q 007517 117 VARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILG-LGQNGEVQKARVVFDQMREKDDATW 195 (600)
Q Consensus 117 ~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~~~~~~~~~~ 195 (600)
+|+..+.-....|..+...-...|-+.|++++|..+|+.+...+..-+...+.+ +...+....+. +.+..+.....+|
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 999999955555555777777889999999999999999974444333333221 11111111221 3455554333344
Q ss_pred HH---HHHHHHHcCChHHHHHHHHHHHHcCC-------------ccCchh-HhhHHHHHhhhcchHHHHHHHHHHHHcCC
Q 007517 196 SG---MIKVYERKGYELEVIDLFTLMQKEGV-------------RVNFPS-LISVLSVCASLASLDHGRQVHAQLVRCQF 258 (600)
Q Consensus 196 ~~---li~~~~~~g~~~~A~~~~~~m~~~g~-------------~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 258 (600)
.. ....+...|++.+|+++++...+.+. .-+..+ -..+.-++-..|+.++|..++..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 33 34567889999999999998833211 001111 12233455678999999999999998874
Q ss_pred CCch---hhHHHHHHHHHHcCCHH-HHHhhhhhcCCCCH--------------HHH-HHHHHHHHhcCChHHHHHHHHHH
Q 007517 259 DVDV---YVASVLITMYIKCGELV-KGKLIFDNFASKDI--------------VMW-NSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 259 ~~~~---~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~li~~~~~~g~~~~A~~~~~~m 319 (600)
...+ ...|.|+.+-....-.+ .++..|+....... +.. +.++..|. +..+.+.++-...
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~l 333 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASL 333 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhC
Confidence 3221 22333433221111111 23333333322221 112 22233332 2223444433332
Q ss_pred HHCCCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH--------
Q 007517 320 FSSGVMPDDVTLVGVLSACSYT--GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIE-------- 388 (600)
Q Consensus 320 ~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~-------- 388 (600)
. +..|. ..+..++..+... .....+.+++....+.+ +-. ..+.-.++......|+++.|.+++.
T Consensus 334 p--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~--p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 334 P--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGH--PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred C--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC--CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 1 22343 3444555544322 24667777777766542 222 5566678888999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 389 AM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ----LEPKN---AGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 389 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.. .+.-.+.+..++..-+.+.++.+.|..++..++. ..+.. -.++..++..-.+.|+-++|..+++++.+.
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 44 2333456666777778888888888888877765 22222 223444555556779999999999999873
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=3.6e-06 Score=86.72 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=62.7
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG 342 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 342 (600)
.-+...|-..|++++|.++.+...+ | .+..|..-...|-..|++.+|.+.++..+... .-|...-+-....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCC
Confidence 3445555556666666666665443 2 23445555555666666666666666655432 122333333444555566
Q ss_pred CHHHHHHHHHHhHhcCCCCCChH------H--HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 343 KVKEGREIFESMKSKYLVEPKTE------H--YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~------~--~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
++++|.+++....+. +..|... . ......+|.|.|++..|++.|..+
T Consensus 277 ~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666555443 2122111 1 133456666666666666655443
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.5e-05 Score=78.73 Aligned_cols=215 Identities=13% Similarity=0.127 Sum_probs=146.4
Q ss_pred hhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCH---H-------HHHHHH
Q 007517 231 ISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDI---V-------MWNSII 300 (600)
Q Consensus 231 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~-------~~~~li 300 (600)
..+.++.-+..+++.+.+-+...+... .+..-++....+|...|........-+...+..- . +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 345555666667777777777777765 6666777778888888887777666655444221 1 122234
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh-HHHHHHHHHHhhcCC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT-EHYACMVDLLGRAGQ 379 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 379 (600)
.+|...++++.|+..|.+....-..||..+ +....+++....+...- +.|.. .--..-..-+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccC
Confidence 466677888888888888766544444322 12233444433333221 23332 111222566778899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+..|.+.+.++ ...| |...|....-+|.+.|++..|+.-.+..++++|+....|..=+-++....+|++|.+.|++-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 3345 577888888889999999999999999999999988888888888888899999998888766
Q ss_pred hC
Q 007517 458 KR 459 (600)
Q Consensus 458 ~~ 459 (600)
+.
T Consensus 454 e~ 455 (539)
T KOG0548|consen 454 EL 455 (539)
T ss_pred hc
Confidence 54
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.5e-05 Score=78.17 Aligned_cols=240 Identities=16% Similarity=0.227 Sum_probs=160.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhHhhHHHHHhhhcchHHHHHHHHHHHHcC------------
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF-PSLISVLSVCASLASLDHGRQVHAQLVRCQ------------ 257 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------ 257 (600)
|+..-..-+.++...+-+.+-++++++..-..-..+. ..+-.++-.-+-..+.....++.+++-...
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 6666777788899999999999999887643211111 111112111111222222223222222111
Q ss_pred -----------CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 258 -----------FDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 258 -----------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
+..+....+.||+ .-+.++.|.+.-++.. ....|..+..+-.+.|...+|++-|-+ ..
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------ad 1131 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------AD 1131 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cC
Confidence 1112222222222 2344444444444443 345799999999999999999988765 34
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 406 (600)
|...|..++.++++.|.+++-.+++...+++ .-+|.+ -+.|+-+|++.+++.+-++++. -||..-...+.+-|
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRC 1204 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHH
Confidence 6678999999999999999999999877765 335554 4579999999999999888775 48888888899999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
...|.++.|.-++... ..|..|+..+...|.+..|...-++.
T Consensus 1205 f~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999998888744 67888888888888888777554433
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.67 E-value=3.4e-05 Score=79.72 Aligned_cols=364 Identities=15% Similarity=0.121 Sum_probs=217.7
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC------------CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHH
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP------------EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTN 73 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 73 (600)
-..|..+.+.|.+.++++-|.-.+..|. +.+..+-..+.-.-...|.+++|..+|.+-.. |..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DL 831 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDL 831 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHH
Confidence 3569999999999999998888888776 11213333333344567889999998887653 334
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC-CcccHHHHHHHHHhCCChHHHHHHHhhcCC-----------------------CC
Q 007517 74 MVLGYCQDGRVDEGREIFDEMPKK-NVISWTTMISGYVNNNRIDVARKLFEVMPE-----------------------KN 129 (600)
Q Consensus 74 li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------p~ 129 (600)
|=..|-..|.+++|.++-+.-.+- =..||-.-..-+-..++.+.|++.|++... .|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d 911 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD 911 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccc
Confidence 556677788888888876543221 112444444445556777777777765533 23
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChH
Q 007517 130 EVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209 (600)
Q Consensus 130 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 209 (600)
...|.--..-+-..|+.+.|..+|..+. -|-+++...+-.|+.++|-++-++- .|....-.+.+.|-..|++.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHH
Confidence 3344444444556677777777776553 2445566666677777777776653 35556666788888889999
Q ss_pred HHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---------------chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---------------SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
+|..+|.+.+. |...|+.|-..+ +.-.|-.+|++ .|. -....+..|-|
T Consensus 985 ~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~-----~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 985 KAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---LGG-----YAHKAVMLYHK 1047 (1416)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cch-----hhhHHHHHHHh
Confidence 99988877643 344444332222 22222222222 221 12234556778
Q ss_pred cCCHHHHHhhhhhcC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 275 CGELVKGKLIFDNFA--------------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
.|.+.+|+++--+-. ..|+...+--..-|..+.++++|..++-..++ |...+..|..
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~ 1118 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN 1118 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc
Confidence 888877766532211 13666666667778888888888888776553 4445555544
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
. ++.-..++-+.|.-...-.|+ ......+.+.+.++|.+..|-+-|.+.+-+ . .-+.++.+.||.++
T Consensus 1119 ~-nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l----~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1119 R-NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--L----SAMRALLKSGDTQK 1189 (1416)
T ss_pred C-CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--H----HHHHHHHhcCCcce
Confidence 3 333334444444221111222 345667778888899988888888877522 1 22445556666543
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=4.8e-05 Score=78.66 Aligned_cols=389 Identities=13% Similarity=0.153 Sum_probs=216.0
Q ss_pred HHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC------------CCcchHHHHHHHHHhcCC
Q 007517 16 YVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE------------KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 16 ~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~------------~~~~~~~~li~~~~~~g~ 83 (600)
|..-|+.+.|.+-.+.+. +..+|..+.++|.+..+++-|.-.+..|.. .+...-......-...|.
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 455677777777666654 446688888888888888887777777651 111222223333456678
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCcc
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVV 162 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (600)
+++|..+|.+.++ |..|=+.|-..|.+++|+++-+.=.+ -=..||..-..-+-..+|.+.|.+.|++...+-..
T Consensus 816 lEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 816 LEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHH
Confidence 8888888877665 44455666777888888877654333 22346666666666677888888888776532222
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
+...|. .+........+++.++ ..|.-...-.-..|+.+.|+.+|..... |-++....+-+|+
T Consensus 891 v~rmL~------e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 891 VFRMLK------EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred HHHHHH------hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 222221 1223333344444444 4444445555667899999998887654 4455666777888
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcC---------------
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYG--------------- 307 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g--------------- 307 (600)
.++|-++-++- -|....-.|..+|-..|++.+|...|.+... +..-|..+-.++
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 88888776542 3566777788999999999999998876542 222222222111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH---------HHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI---------FESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
+.-.|-++|++. |.. +...+..|-++|.+.+|.++ ++-+.++..-..|+...+--.+.+....
T Consensus 1023 d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 122233333321 111 11122234455555555433 2223333222345666666666666666
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCCC---CchHHHHHHHHHhcCCchHHHHH
Q 007517 379 QVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPKN---AGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 379 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~---~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
++++|..++-... -|.--+..| ...+..--+++.++|.-- .|+. ......++..|.++|.+..|.+-
T Consensus 1095 qyekAV~lL~~ar------~~~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAR------EFSGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 6666666654331 112222222 222333334444443321 1211 12355677777777777766654
Q ss_pred HH
Q 007517 453 RK 454 (600)
Q Consensus 453 ~~ 454 (600)
|.
T Consensus 1168 fT 1169 (1416)
T KOG3617|consen 1168 FT 1169 (1416)
T ss_pred Hh
Confidence 43
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.64 E-value=9.2e-06 Score=85.59 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=116.3
Q ss_pred HHHHhhhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 279 VKGKLIFDNFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 279 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+.|...+.... ..+...||+|.-. ...|++.-|...|-+-... -+-+..+|..+--.|....+++.|...|...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35566665543 3677888887665 6667777777777665543 23445677777777888889999999998876
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHH----------H
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDAIIWGSLLGACRTHMKLDLAEV----------A 418 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~----------~ 418 (600)
.- -+.+...|--..-.....|+.-++..+|..- +--|+..-|..-..-....|+.++-.. .
T Consensus 878 SL--dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 SL--DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred hc--CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 52 2334555655555556778888888887652 223555556555555556666554433 3
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.++.+...|+...+|...+....+.+.+++|.+...+.
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555568888888888888888888888888776655
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.60 E-value=7e-05 Score=75.75 Aligned_cols=415 Identities=12% Similarity=0.066 Sum_probs=214.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhC
Q 007517 39 SWTVMLGGFIRDSRIDDARRLFDMMPEKDVV---AQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNN 112 (600)
Q Consensus 39 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~ 112 (600)
.|-..+..| ..+++....++.+.+.++.+. +.....-.+...|+.++|......-.+ ++.+.|..+.-.+-..
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 344455544 334555555555555432221 111122234456788888887776655 3556788777777777
Q ss_pred CChHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 113 NRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 113 g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
.++++|++.|..... || ...+.-+.-.-++.|+++.....-.+.. +.....|..++.++.-.|+...|..+.++
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776 43 3344433333344555554444333333 33334455566666666666666666554
Q ss_pred ccc-----CChhhHHHHH------HHHHHcCChHHHHHHHHHHHHcCCccCchhH-hhHHHHHhhhcchHHHHHHHHHHH
Q 007517 187 MRE-----KDDATWSGMI------KVYERKGYELEVIDLFTLMQKEGVRVNFPSL-ISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 187 ~~~-----~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
... ++...+.-.. .....+|..++|++-+..-... ..|...+ -.-.....+.+++++|..++..++
T Consensus 169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 432 2222222221 1234455555555554433222 1222222 223334455566666666666665
Q ss_pred HcCCCCchh-hHHHHHHHHHHcCCHHHHH-hhhhhcCCCCH-HH-HHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 007517 255 RCQFDVDVY-VASVLITMYIKCGELVKGK-LIFDNFASKDI-VM-WNSIISGYAQYGLG-EKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 255 ~~~~~~~~~-~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~-~~-~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~ 329 (600)
... ||.. .|-.+..++.+-.+.-++. .+|....+.-. .. -.-+--...+..+. +..-+++..+.+.|++|--.
T Consensus 247 ~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~ 324 (700)
T KOG1156|consen 247 ERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK 324 (700)
T ss_pred hhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh
Confidence 553 3332 2233333443222222222 44443332100 00 00000011111222 23334555666666655433
Q ss_pred HHHHHHHHHhccCCHHH----HHHHHHHhHhcC-C--------CCCChH--HHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007517 330 TLVGVLSACSYTGKVKE----GREIFESMKSKY-L--------VEPKTE--HYACMVDLLGRAGQVEDAMKLIEAM-PFE 393 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~----a~~~~~~~~~~~-~--------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 393 (600)
.+.++ +-.-...+- +..+...+.... . -+|... ++-.++..|-+.|+++.|...++.. +..
T Consensus 325 dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 325 DLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 33333 222111111 222222221110 0 134443 3456788889999999999999887 656
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 394 PDAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 394 p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
|+.+ .|..=...+...|+++.|...++++.+++-.|...-.--++-..++.+.++|.++.....+.|.
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 7654 3444456677789999999999999998866633322456666788999999999888877664
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=5.1e-06 Score=78.25 Aligned_cols=178 Identities=10% Similarity=0.005 Sum_probs=103.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--K-DI---VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV----TL 331 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 331 (600)
...+-.+...|.+.|++++|...|+++.. | +. .+|..+...|.+.|++++|+..++++.+. .|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHHH
Confidence 34445555566666666666666665433 1 11 34555566666666666666666666553 22211 22
Q ss_pred HHHHHHHhcc--------CCHHHHHHHHHHhHhcCCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007517 332 VGVLSACSYT--------GKVKEGREIFESMKSKYLVEPKT-EHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL 402 (600)
Q Consensus 332 ~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l 402 (600)
..+..++... |+.++|.+.|+.+.+.+ |+. ..+..+.... ...... ......+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMD----YLRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHH----HHHHHH-----------HHHHHHH
Confidence 2233333322 45556666666555432 221 1221111110 000000 0011245
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...+...|+++.|...++++++..|+++ ..+..++.+|...|++++|..+++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5668889999999999999999877653 67889999999999999999999988754
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.59 E-value=4.1e-05 Score=77.16 Aligned_cols=19 Identities=5% Similarity=-0.206 Sum_probs=12.3
Q ss_pred HHHcCCHHHHHHHHHHHhc
Q 007517 406 CRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~ 424 (600)
+...|+.+.|.+.+..++.
T Consensus 317 ~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 317 AFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4466777777777666654
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00016 Score=82.62 Aligned_cols=351 Identities=9% Similarity=-0.010 Sum_probs=219.2
Q ss_pred HHhcCChHHHHHHHhhCCCCCccc--HHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHHHHHhcCCChHHHHH
Q 007517 78 YCQDGRVDEGREIFDEMPKKNVIS--WTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAMLMGYTQCGRIQDAWE 151 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll~~~~~~g~~~~a~~ 151 (600)
+...|++.+|..........+... ...........|+.+.+..++..+.. .+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 334455555555555444322111 11122344556888888888777643 233333444555667899999888
Q ss_pred HHhhCC----CCC---c-c----chhHHHHHHHhcCCHHHHHHHHHhccc----CCh----hhHHHHHHHHHHcCChHHH
Q 007517 152 LFKAMP----MKS---V-V----ASNSMILGLGQNGEVQKARVVFDQMRE----KDD----ATWSGMIKVYERKGYELEV 211 (600)
Q Consensus 152 ~~~~~~----~~~---~-~----~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A 211 (600)
.+.... ..+ . . ....+...+...|++++|...+++... .+. ..++.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 887654 111 1 1 112233456789999999999887643 121 2445666778889999999
Q ss_pred HHHHHHHHHcCCc---c--CchhHhhHHHHHhhhcchHHHHHHHHHHHHc----CCCC---chhhHHHHHHHHHHcCCHH
Q 007517 212 IDLFTLMQKEGVR---V--NFPSLISVLSVCASLASLDHGRQVHAQLVRC----QFDV---DVYVASVLITMYIKCGELV 279 (600)
Q Consensus 212 ~~~~~~m~~~g~~---p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~y~~~g~~~ 279 (600)
...+.+.....-. + ...++..+...+...|+++.|...+...... +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999888653111 1 1234445566778899999999988876653 2211 2234455666777889999
Q ss_pred HHHhhhhhcCC------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHH-----HHHHHHHhccCCHH
Q 007517 280 KGKLIFDNFAS------K--DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PDDVTL-----VGVLSACSYTGKVK 345 (600)
Q Consensus 280 ~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~ 345 (600)
+|...+++... + ....+..+...+...|++++|.+.+.+.....-. .....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 99988876532 1 1334555666788899999999999887542111 111111 11123345578999
Q ss_pred HHHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 346 EGREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
.|.+++........-.+ ....+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876543210001 0112356777889999999999988876 22222 33566667788999999999
Q ss_pred HHHHHHHhccCCC
Q 007517 416 EVAAKKLLQLEPK 428 (600)
Q Consensus 416 ~~~~~~~~~~~p~ 428 (600)
...+.+++++...
T Consensus 751 ~~~L~~Al~la~~ 763 (903)
T PRK04841 751 QRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999987544
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=7.5e-06 Score=74.11 Aligned_cols=147 Identities=11% Similarity=0.097 Sum_probs=113.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
+.+|...|+++.+....+.+. .|. . .+...++.+++...++...+.. +.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~----~~~-~-------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA----DPL-H-------QFASQQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh----Ccc-c-------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCC
Confidence 346777888777644432221 111 0 1223566777777777776642 5678899999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGAC-RTHMK--LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
+++|...|++. ...| +...+..+..++ ...|+ .++|..+++++++.+|+++..+..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 567777777764 67677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 007517 455 NMRKRN 460 (600)
Q Consensus 455 ~m~~~g 460 (600)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 998754
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=1e-05 Score=88.12 Aligned_cols=200 Identities=15% Similarity=0.164 Sum_probs=160.2
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS--------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
|.+...|-..+......+++++|++++++... .-...|.+++..-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777777778888888888888887653 13457888888888888778888999998874 222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIWGSLLGAC 406 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~~ 406 (600)
|..|+..|.+.+..++|.++++.|.++++ ....+|..+++.+.+..+-+.|.+++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888889999999999999999999875 67788999999999999999999998876 2222 344455555666
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
.++|+.+++..+|+-++.-.|.....|..++++=.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78899999999999999999988888999999999999999999999999888765
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.00016 Score=71.67 Aligned_cols=404 Identities=12% Similarity=0.150 Sum_probs=237.2
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC--CCcchHHHHHHHH
Q 007517 4 RNVVSWTAMVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--KDVVAQTNMVLGY 78 (600)
Q Consensus 4 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~ 78 (600)
-|+.+|+.||+-+... .++++.+.++++. +..+..|..-+..-.+..+++...++|.+... -+...|..-|+--
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YV 96 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYV 96 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Confidence 3677999999977665 9999999999998 34567888889999999999999999998773 3667777666543
Q ss_pred Hh-cCChHHH----HHHHhhC------CCCCcccHHHHHHH---------HHhCCChHHHHHHHhhcCC-C---------
Q 007517 79 CQ-DGRVDEG----REIFDEM------PKKNVISWTTMISG---------YVNNNRIDVARKLFEVMPE-K--------- 128 (600)
Q Consensus 79 ~~-~g~~~~A----~~~~~~m------~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~-p--------- 128 (600)
-+ .|....+ .+.|+-. .-.+-..|+.-+.. +..+.+.+...+++.++.. |
T Consensus 97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~ 176 (656)
T KOG1914|consen 97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK 176 (656)
T ss_pred HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence 32 2333222 2222211 11233446655542 3344567777888888876 2
Q ss_pred CcchHHHHHHH-------HhcCCChHHHHHHHhhCC------CCCcc---------------chhHHHHHHHhcCCHH--
Q 007517 129 NEVSWTAMLMG-------YTQCGRIQDAWELFKAMP------MKSVV---------------ASNSMILGLGQNGEVQ-- 178 (600)
Q Consensus 129 ~~~t~~~ll~~-------~~~~g~~~~a~~~~~~~~------~~~~~---------------~~~~li~~~~~~g~~~-- 178 (600)
|-.+|-.=++. --+...+..|+++++++. ..... .|-.+|.-= +.+-+.
T Consensus 177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~t~ 255 (656)
T KOG1914|consen 177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCCcccc
Confidence 21222221211 112344556666666654 11111 132333221 111111
Q ss_pred -----H--HHHHHHhccc---CChhhHHHH-------HHHHHHcCC-------hHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 179 -----K--ARVVFDQMRE---KDDATWSGM-------IKVYERKGY-------ELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 179 -----~--A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
. ..=++++... -.+..|-.- -..+...|+ .+++..+++.....-..-+..+|..+.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011111110 011222111 122333333 456666666655443333444444443
Q ss_pred HHHhhhc---chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhc
Q 007517 235 SVCASLA---SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQY 306 (600)
Q Consensus 235 ~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~ 306 (600)
.---..- ..+....++..+.......-..+|..+++.-.+..-+..|+.+|.+..+ .++...++++.-|+.
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs- 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS- 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence 3222222 2555666666666554333446777888888888889999999988765 277788888887774
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A 383 (600)
++..-|.++|+--.+. -+|.. --...+.-+++.++-..++.+|+..... ++.|+ ...|..+++-=..-|++..+
T Consensus 415 kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 5667899999875543 23333 3344566777888999999999998886 66665 67899999999999999999
Q ss_pred HHHHHhC----C--CCCCHHHHHHHHHHHHHcCCHH
Q 007517 384 MKLIEAM----P--FEPDAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 384 ~~~~~~m----~--~~p~~~~~~~ll~~~~~~g~~~ 413 (600)
.++-+++ + ..|....-..+++-|...+...
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8887766 2 2222223334455555555443
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.2e-05 Score=75.79 Aligned_cols=183 Identities=14% Similarity=0.115 Sum_probs=128.0
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHH
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL-------VGVLS 336 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~ll~ 336 (600)
..+.++..+..+++.|.+-+....+ .++.-++....+|...|.+.+....-....+.|-. ...-| ..+-.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 3456666677778888877776544 45555677778899998888887777776665521 11122 22333
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI-IWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~ 414 (600)
++.+.++++.+..+|.+....+. .| +.+.+....+++.+..+.. -+.|... --..=.+.+.+.|++..
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R-t~---------~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR-TP---------DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc-CH---------HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 66667889999999988776542 22 2344555566666666554 2345432 22333667889999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|.+.+.+++..+|+++..|...+-+|.+.|.+.+|.+=-+.-.+.
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999865555443
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00011 Score=68.60 Aligned_cols=301 Identities=7% Similarity=0.015 Sum_probs=174.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH---HHHHhCCChHHHHHHHhhcCC--CCcch-HHHHHHHHhcCCC
Q 007517 72 TNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMI---SGYVNNNRIDVARKLFEVMPE--KNEVS-WTAMLMGYTQCGR 145 (600)
Q Consensus 72 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~--p~~~t-~~~ll~~~~~~g~ 145 (600)
--+...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=|.+..+ ||-.. -..-...+.+.|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 35677788889999999999999988888887765 467888999899888888877 66432 2233456788999
Q ss_pred hHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 146 IQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
++.|..-|+.++..++.- +....++.+.-..++-+.+ ...+..+..+|+...|++....+.+.. +.
T Consensus 122 le~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred HHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 999999999998333210 1111111111111111111 112223334444444444444444321 22
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCH----HHHHH-
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDI----VMWNS- 298 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~----~~~~~- 298 (600)
|...+..-..++...|.+..|+.-+..+.+..- .+....--+-..+...|+.+.++...++... ||- ..|..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 333333333444444444444444433333321 1222222333444444555554444444332 111 01111
Q ss_pred ------H--HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHH
Q 007517 299 ------I--ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL---VGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEH 366 (600)
Q Consensus 299 ------l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~ 366 (600)
| +......+++.++++..+...+.......+++ ..+-.++...|.+.+|++...++.. +.|+ +.+
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~ 343 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHH
Confidence 1 22345667888888888887765322223333 3444566778899999999888875 3555 888
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+.--.++|.-...+++|..-|+..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888899999999999999999887
No 108
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.3e-07 Score=56.68 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFA 289 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 289 (600)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777666663
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.47 E-value=0.0012 Score=65.65 Aligned_cols=419 Identities=12% Similarity=0.121 Sum_probs=240.3
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISG 108 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~ 108 (600)
+.|..+|+.|+.-+... .++++++.++++.. .....|..-|..-.+..+++..+++|.+... -++..|..-++-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 44778899999876655 89999999998873 3567788888888888999999999988764 466677776653
Q ss_pred HHh-CCChHH----HHHHHhhcCC------CCcchHHHHHHH---------HhcCCChHHHHHHHhhCCCCCcc----ch
Q 007517 109 YVN-NNRIDV----ARKLFEVMPE------KNEVSWTAMLMG---------YTQCGRIQDAWELFKAMPMKSVV----AS 164 (600)
Q Consensus 109 ~~~-~g~~~~----A~~~~~~m~~------p~~~t~~~ll~~---------~~~~g~~~~a~~~~~~~~~~~~~----~~ 164 (600)
--+ +|.... ..+.|+-... .....|+..+.. +....+++..+++++++...... .|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 222 232222 1222222222 122233333332 22333556667777777622222 22
Q ss_pred hHHHHH-------------HHhcCCHHHHHHHHHhccc------CCh---------------hhHHHHHHHHHHcCCh--
Q 007517 165 NSMILG-------------LGQNGEVQKARVVFDQMRE------KDD---------------ATWSGMIKVYERKGYE-- 208 (600)
Q Consensus 165 ~~li~~-------------~~~~g~~~~A~~~f~~~~~------~~~---------------~~~~~li~~~~~~g~~-- 208 (600)
+-.... --+...+-.|++++++... ++. ..|-.+|.-=..++--
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~ 255 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL 255 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211100 0012234455555555431 111 1143344322211110
Q ss_pred ------HHHHHHHHH-HHHcCCccCchhH-hhHH----HHHhhhcc-------hHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 209 ------LEVIDLFTL-MQKEGVRVNFPSL-ISVL----SVCASLAS-------LDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 209 ------~~A~~~~~~-m~~~g~~p~~~t~-~~ll----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
....-.+++ |+--+..|+..-. ...+ ..+...|+ -+++..+++..+..-...+..+|.++.
T Consensus 256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a 335 (656)
T KOG1914|consen 256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA 335 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111221 1112333332211 1111 11222233 334445555544433333334443333
Q ss_pred HHHHHcC---CHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc
Q 007517 270 TMYIKCG---ELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYT 341 (600)
Q Consensus 270 ~~y~~~g---~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~ 341 (600)
+.=-..- ..+.....+++... .-..+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-s 414 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-S 414 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-c
Confidence 2111111 12333333433332 233567777888788888899999999999998888 5566777776555 5
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~ 416 (600)
++.+-|.++|+.-.+++| .++..-...++-+...++-..|..+|++. .+.|+ ..+|..++.--..-|+...+.
T Consensus 415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~ 492 (656)
T KOG1914|consen 415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL 492 (656)
T ss_pred CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 899999999998887653 45666678999999999999999999988 23444 578999999999999999999
Q ss_pred HHHHHHhccCCCC----CchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 417 VAAKKLLQLEPKN----AGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 417 ~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.+-++....-|.+ ...-..+.+-|.-.+.+..-..-++.|
T Consensus 493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 9988877654421 123455677777777776655555555
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3e-05 Score=70.89 Aligned_cols=300 Identities=16% Similarity=0.112 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCCCC---CccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHH-HHHHHHHcC
Q 007517 133 WTAMLMGYTQCGRIQDAWELFKAMPMK---SVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSG-MIKVYERKG 206 (600)
Q Consensus 133 ~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 206 (600)
+++++..+.+..+++.+.+++..-.+. +....+.|..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444444455556666666665544422 333344555566666666666666666543 22222221 123344555
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHH--HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSV--CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
.+..|+.+...|... |+...-..-+.+ .-+.+++..++.+.++.-.. .+..+.+...-...+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 666666666555432 111111111111 11233444444443333211 1222222222233444555555555
Q ss_pred hhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCC
Q 007517 285 FDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLV 360 (600)
Q Consensus 285 ~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~ 360 (600)
|+...+ .....||.-+.- .+.|+++.|+++..+++++|++..+. ++ .|..-++..+ ... |
T Consensus 167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDv----rsv-g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDV----RSV-G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCch----hcc-c-
Confidence 544433 233444433322 23344555555555555554432211 00 0111010000 000 0
Q ss_pred CCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 361 EPKT-------EHYACMVDLLGRAGQVEDAMKLIEAMP----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 361 ~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.|-. ..+|.-...+.+.|+++.|.+.+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 0111 223333445678999999999999994 23477776654322 23567778888888899999988
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 430 AGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+.+|..++-.|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999887654
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.46 E-value=5.9e-06 Score=70.69 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=86.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF 392 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 392 (600)
.+|++..+ +.|+. +.....++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555544 34553 334555667778888888888877653 1346777778888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 44 56777778888888888888888888888888888777766666553
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.46 E-value=2.5e-05 Score=85.24 Aligned_cols=226 Identities=12% Similarity=0.145 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-----chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-----FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
.|-..|.-..+.++.++|.+++++.+.. +.+. ...|.++++.--.-|.-+...++|+++.+.. ....+|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 3444444444444444444444444332 1111 1123333333333344444455555554432 234567778
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLV-GVLSACSYTGKV 344 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~ 344 (600)
...|.+.++.++|-++|+.|.+ .....|...+..+.++++.+.|..++.+..+.-.+-..+-+. -.+..-.+.|+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888865 356788888899999998899999999887752222233222 223333567899
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEP--DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.|+.+|+.....+ +-..+.|+.++++-.+.|+.+.+..+|++. ++.| --..|.-.+.--..+|+-+.++.+=
T Consensus 1617 eRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred hhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999988764 456888999999999999999999999987 3333 3456666676667777766666655
Q ss_pred HHHhc
Q 007517 420 KKLLQ 424 (600)
Q Consensus 420 ~~~~~ 424 (600)
.++.+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 55443
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=2.7e-05 Score=82.18 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=116.2
Q ss_pred HHHHHHHHccCCCCCc---chHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcC
Q 007517 53 IDDARRLFDMMPEKDV---VAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMP 126 (600)
Q Consensus 53 ~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 126 (600)
...|...|-+..+.|+ ..|..|...|...-+...|.+-|++..+ .+..++....+.|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 4444444444433333 4577777777777788888888887665 466788888889999999988888743333
Q ss_pred C--C---CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHH
Q 007517 127 E--K---NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGM 198 (600)
Q Consensus 127 ~--p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l 198 (600)
+ | -...|..+.-.+...++...+..-|+... +.|...|..|..+|.++|++..|.++|.+...-++.+|-.-
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 3 1 11233335555677788888888888777 66777888899999999999999999988876555544322
Q ss_pred ---HHHHHHcCChHHHHHHHHHHHH
Q 007517 199 ---IKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 199 ---i~~~~~~g~~~~A~~~~~~m~~ 220 (600)
...-+..|.+.+|++.+.....
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2234567888888888877654
No 114
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.0024 Score=68.05 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC------CChHHHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVE------PKTEHYAC 369 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~------p~~~~~~~ 369 (600)
.-++.-|-..|-+++.+.+++... |+.--.. .|+-+.-.|++ =.+++..+.++-.-.+-+++ .....|+-
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahlW~E 1359 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSE 1359 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 445666666777777777666543 2222222 23333333333 23444444333332222221 13456888
Q ss_pred HHHHHhhcCCHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~ 386 (600)
++..|.+-..+|.|.-.
T Consensus 1360 lvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1360 LVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHhhhhhhHHHHH
Confidence 88888888777776543
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=3.5e-07 Score=55.84 Aligned_cols=32 Identities=31% Similarity=0.579 Sum_probs=24.2
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 359 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777776
No 116
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=6.2e-06 Score=69.38 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
....-.+...+...|++++|.++|+-. .+.| +..-|..|...|...|++++|+..+.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555677778899999999999987 4445 56779999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 442 SQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
..|+.+.|++-|+......- . +|+...+..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~-~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------E-VSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------c-ChhHHHHHHHHHHHHHHhh
Confidence 99999999999998775421 1 6777777777766666553
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=1.8e-05 Score=67.76 Aligned_cols=107 Identities=15% Similarity=0.035 Sum_probs=91.5
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34554443 2344 4667888999999999999999987 4455 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|+++..+..++.++...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987643
No 118
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00011 Score=71.61 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=102.8
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG--EKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+++++..++++.. ++..+|+.....+.+.|.. ++++.+++++.+.. +-|...|.....++.+.|+++++.+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4555555544432 3444555443334444432 45566666665532 2233455555555556666666666666
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHH
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRA---GQ----VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH----MKLDLAEVAA 419 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~ 419 (600)
++.+.. +.+...|+....++.+. |. .+++.+...++ ...| |...|+.+...+... +...+|...+
T Consensus 167 ~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 665531 23444555444444333 22 23455555333 3345 567788888887773 3446688888
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 007517 420 KKLLQLEPKNAGPYILLSNIYASQG------------------RFHDVAELRKNMR 457 (600)
Q Consensus 420 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 457 (600)
.++...+|+++.....|+..|+... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888998888899999998643 2356777777773
No 119
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=2.9e-05 Score=77.51 Aligned_cols=212 Identities=16% Similarity=0.172 Sum_probs=152.4
Q ss_pred HhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHH
Q 007517 140 YTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
+.+.|++.+|.-.|+..+ +.+...|.-|.......++-..|+..+++..+- |....-+|.-.|...|.-.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 456788888888888877 555667878888888888888888888887754 55666777778888888899999
Q ss_pred HHHHHHHcCCc--------cCchhHhhHHHHHhhhcchHHHHHHHHHH-HHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 214 LFTLMQKEGVR--------VNFPSLISVLSVCASLASLDHGRQVHAQL-VRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 214 ~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
.|+.......+ ++..+-.. +.......+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88888654311 01110000 1222233344444444444 4455557888888888889999999999999
Q ss_pred hhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 285 FDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 285 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
|+.... .|...||-|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|.+.|-...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 987754 4778999999999999999999999999887 578765 33345557889999999988876543
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=2.1e-05 Score=71.06 Aligned_cols=133 Identities=18% Similarity=0.188 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSL 402 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 402 (600)
.|+......+-.++...|+-+....+.......+ +.+......++....+.|++.+|...|.+. +-++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 4543333445556666777777777766654432 345566666888888888888888888877 445678888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.-+|.+.|+.+.|...+.+++++.|++|..+..|+..|.-.|+.+.|..++......
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888888888888888888888888777654
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=6.6e-05 Score=80.55 Aligned_cols=140 Identities=14% Similarity=0.070 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
++..+-.|.....+.|.+++|..+++...+ +.||.. ....+..++.+.+.+++|....++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 567777888888888999999999988887 467765 5666777888888999998888888763 23457777888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
...+.+.|++++|.++|++. .-.|+ ...|..+..++...|+.++|...|+++++...+-...|..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88888899999999998887 22343 7788888888888899999999999888865443344443
No 122
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=6.3e-05 Score=70.76 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=126.0
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CH---HHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD-V-DVYVASVLITMYIKCGELVKGKLIFDNFASK---DI---VMWN 297 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~~ 297 (600)
....+......+...|+++.|...++.+.+.... + ....+..+...|.+.|++++|...|+.+.+. +. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3455667777888999999999999999886521 1 1246677889999999999999999988642 12 2455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 298 SIISGYAQY--------GLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 298 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
.+...+.+. |+.++|++.|+++... .|+.. ....+... . .. .... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~------~~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YL------RNRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HH------HHHH---------HHHHH
Confidence 566666654 7889999999999875 55543 22111111 0 00 0000 01123
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888999999999988877 2233 356788899999999999999998888776555
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=0.00012 Score=66.34 Aligned_cols=156 Identities=11% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
-+..|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777776654443322211 01223566678888888877652 45566788888889999999999
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDL-LGRAGQ--VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
...|++..+.. +.+...+..+..+ |.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...++++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888742 4468888888886 467777 59999999988 4455 5678888888999999999999999999
Q ss_pred hccCCCCCchHH
Q 007517 423 LQLEPKNAGPYI 434 (600)
Q Consensus 423 ~~~~p~~~~~~~ 434 (600)
+++.|.+..-+.
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 998887754443
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=3.3e-05 Score=79.11 Aligned_cols=189 Identities=19% Similarity=0.180 Sum_probs=137.8
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
+++|--..-..+...+.++|-...|..+|+++ ..|.-.|..|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34566666677889999999999999999875 4788889999999999999999988877 3888889988888
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
......-+++|.++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++...
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 877777788888887765432 1111222223466777777777644 3333 35567777777777777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|...|.....++|++...++.++.+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 7777777777777777777777777777777777777777776655
No 125
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=1.9e-06 Score=53.43 Aligned_cols=35 Identities=37% Similarity=0.710 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD 328 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 328 (600)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.21 E-value=0.00034 Score=76.02 Aligned_cols=234 Identities=10% Similarity=0.043 Sum_probs=113.8
Q ss_pred CCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHH
Q 007517 159 KSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235 (600)
Q Consensus 159 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 235 (600)
.+...+..|++.|...+++++|.++.+...+. ....|-.+...+.+.++..++..+ .+. .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------D 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------h
Confidence 33445556666666666666666666644432 222233333345555554444333 221 1
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHH
Q 007517 236 VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKS 312 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 312 (600)
......++.....+...+... ..+...+..|..+|-+.|+.++|..+++++.+ .|+.+.|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 111122222222222223221 22333555566666666666666666665543 3555666666666666 66666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007517 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPF 392 (600)
Q Consensus 313 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 392 (600)
++++.+.... +....++..+.+++..+... .+-+...+-.+... +....+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~k------------i~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERK------------VLGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHH------------HHhhhcc
Confidence 6666655432 33334555555555555542 11112111111111 1111122
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 393 EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
..-+.++--|-..|....+++++..+++.+++.+|.|..+...++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2334445555556666666777777777777777666666666666654
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.21 E-value=0.0002 Score=64.93 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
.+-..+...|+.+....+..+.... ..-|............+.|++.+|...|.+... .-++|...|+.+.-.|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 3344455555555555555443321 111222333355555566666666666666654 2355566666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 378 GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 378 g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
|++++|..-|.+. .+.| ++...+.|...+.-.|+.+.|..++.......+.++..-..|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666666555 3333 3445566666666666666666666666666665555556666666666666666544
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0011 Score=60.13 Aligned_cols=155 Identities=17% Similarity=0.135 Sum_probs=71.5
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCC
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS----YTGK 343 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~ 343 (600)
-...|.+.|+.++|++.......-+....| +..+.+..+.+-|.+.+++|++ -.+..|.+.|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence 334456666666666666553222222222 2333444555666666666654 234445554444432 2234
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCC-HHHHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMK-LDLAEVAAK 420 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~ 420 (600)
+..|.-+|++|..++ +|++.+.+-+.-+....|++++|..++++. ....++.+...++..-...|. .+--.+...
T Consensus 189 ~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 555555555555432 455555555555555555555555555544 212233333333333222332 233334444
Q ss_pred HHhccCCCC
Q 007517 421 KLLQLEPKN 429 (600)
Q Consensus 421 ~~~~~~p~~ 429 (600)
++....|..
T Consensus 267 QLk~~~p~h 275 (299)
T KOG3081|consen 267 QLKLSHPEH 275 (299)
T ss_pred HHHhcCCcc
Confidence 444444444
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=8.4e-05 Score=76.29 Aligned_cols=210 Identities=14% Similarity=0.060 Sum_probs=164.9
Q ss_pred HHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChH
Q 007517 233 VLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGE 310 (600)
Q Consensus 233 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 310 (600)
+...+.+.|-...|..+++.+. .+.-.|.+|...|+..+|..+..+-.+ +|...|..+.+......-++
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 4455666777778888877653 566788999999999999888765544 67888888888888888899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+|.++++.-... .-..+-....+.++++++.+.|+.-.+-+ +....+|-.+.-+..++++++.|.+.|...
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 999999875432 11111112233689999999998876643 345788988999999999999999999876
Q ss_pred -CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 391 -PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 391 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
...|| ...|+.+-.+|.+.|+..+|...+.++++-+-.+...+....-...+-|.|++|.+.+.++.+..
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 56776 55799999999999999999999999999877777777777777789999999999999997643
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=3.1e-05 Score=65.71 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455666777778888888888888776 3334 5667777777888888888888888888888888888888888888
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877654
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.9e-06 Score=51.97 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF 227 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 227 (600)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=0.00028 Score=69.48 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=85.4
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
....|.++.|+..++.+.+. .+.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 34567777777777777764 3445666667777778888888888777776 44565 55667777777777888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.+.++.....+|++|..|..|+.+|...|+..++...+.++.
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888777777778877778888888877777777776666554
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.10 E-value=0.00051 Score=73.91 Aligned_cols=143 Identities=11% Similarity=0.072 Sum_probs=118.0
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT-LVG 333 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ 333 (600)
.+.++..+-.|.....+.|.+++|..+++...+ | +...+-.+...+.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 456688888899999999999999999998865 3 5678888999999999999999999999875 677654 555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLG 404 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~ 404 (600)
+..++.+.|..++|..+|+++... .+-+...+..+...+.+.|+.++|...|++. ...|...-|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999873 2345889999999999999999999999987 33455555555543
No 134
>PLN02789 farnesyltranstransferase
Probab=98.10 E-value=0.0018 Score=63.13 Aligned_cols=225 Identities=11% Similarity=0.033 Sum_probs=132.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
+-..+...++.++|+.+..++.+. .|+..| +..--.++...+ .++++...+..+.+.. +.+..+++.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 334445566677777777776653 344332 222222333444 4567777777776654 33444555554445555
Q ss_pred CCH--HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----
Q 007517 276 GEL--VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT---GK---- 343 (600)
Q Consensus 276 g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~---- 343 (600)
|+. +++..+++.+.+ +|..+|+...-.+...|+++++++.++++++.... |...|+.....+.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 542 556666666543 57788888888888888899999999998876533 333444433333333 22
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-------
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA----GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM------- 410 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g------- 410 (600)
.++..++...+... -+-+...|+.+..+|... ++..+|.+++.+. ...| +......|+..|....
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhh
Confidence 24566666555543 244577788777777763 3456687777765 3334 4666777777776532
Q ss_pred -----------CHHHHHHHHHHHhccCCC
Q 007517 411 -----------KLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 411 -----------~~~~a~~~~~~~~~~~p~ 428 (600)
..++|..+++.+.+.+|-
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~~~d~i 305 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELEVADPM 305 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHHhhCcH
Confidence 235566666666445553
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=6.1e-05 Score=74.79 Aligned_cols=122 Identities=19% Similarity=0.258 Sum_probs=97.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 408 (600)
..+++..+...++++.|..+|+++.+. .|+ ....++..|...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566667778888888888888764 244 4445777777788888888888776 2233 56666666777889
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.++++.|+.+++++.+..|++..++..|+.+|...|++++|...++.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999888774
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=6.5e-06 Score=50.61 Aligned_cols=33 Identities=30% Similarity=0.544 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP 326 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 326 (600)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0013 Score=64.99 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV-LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYAC 369 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 369 (600)
....+.-..-.+.+.|++++|+..++.+... .||...|..+ ...+...++.++|.+.++.+... .|+ ....-.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~ 379 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLN 379 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHH
Confidence 3444444555667889999999999999875 6776655544 56788999999999999999874 455 666778
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+.++|.+.|++++|..+++.. ..+-|+..|..|..+|...|+..++... .+..|.-.|+|+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~ 442 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLE 442 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHH
Confidence 899999999999999999987 3345788999999999999998777554 456788899999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|...+...+++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888754
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00018 Score=71.44 Aligned_cols=127 Identities=12% Similarity=0.111 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTG 342 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g 342 (600)
...+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++..+. .| +...+..-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 33445555566678888888888887766666666777777777778888888887754 33 3334444445577778
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 394 (600)
+.+.|.++.+++... .+.+..+|..|+..|.+.|++++|+-.++.+|..|
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888887763 23346678888888888888888888888776443
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.1e-05 Score=49.55 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCcc
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRV 225 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 225 (600)
+.+||.+|.+|.+.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00021 Score=60.48 Aligned_cols=113 Identities=9% Similarity=0.093 Sum_probs=88.2
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007517 315 VFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF 392 (600)
Q Consensus 315 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 392 (600)
+|++... ..|+. .....+...+...|++++|.+.|+.+.... +.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 34544 345556667788899999999998887642 456788889999999999999999998877 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.| +...+..+...+...|+.+.|...+++++++.|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5677888888999999999999999999999998844
No 141
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.88 E-value=0.024 Score=55.15 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 344 (600)
.+.-|.-+...|+...|.++-.+..-||-.-|-..+.+++..+++++-.++... +-.++-|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455566778888888888888888888899999999999998877765432 22347788888888888888
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
.+|..+...+. +..-+.+|.++|++.+|.+.--+. .|...+..+...|.
T Consensus 254 ~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 254 KEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 88888876521 245678888999998887775553 25555544444433
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.0036 Score=68.33 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=84.7
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcC
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYG 307 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 307 (600)
..+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhh
Confidence 345555556666666666666666666665 55677777777777777 7777777765542 3366666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007517 308 LGEKSLKVFHEMFSSGVMPDDVTL-VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 308 ~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 386 (600)
++.++.++|.++... .|+...+ ..++ +.+....+..--+.++-.+...|...++++++..+
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 777888888887764 4443322 2222 22222112222344455555566666666677666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHH
Q 007517 387 IEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 387 ~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
++.+ ...| |.....-++..|.
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHH
Confidence 6665 3233 3444444444444
No 143
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.058 Score=57.49 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=69.4
Q ss_pred HhCCChHHHHHHHhhCCCCCc-chHHHHHHHH--HcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 007517 17 VEEGMITEAGTLFWQMPEKNV-VSWTVMLGGF--IRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREI 90 (600)
Q Consensus 17 ~~~g~~~~A~~~~~~m~~~~~-~~~~~ll~~~--~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~ 90 (600)
...+++..|+..........+ ..|..++.++ .+.|+.++|..+++... ..|..+...+-..|-..|..++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 345666777776666553222 2344444444 36677777777666554 23556666677777777777777777
Q ss_pred HhhCCC--CCcccHHHHHHHHHhCCChHH----HHHHHhhcCCCCcchHHHHHHHHh
Q 007517 91 FDEMPK--KNVISWTTMISGYVNNNRIDV----ARKLFEVMPEKNEVSWTAMLMGYT 141 (600)
Q Consensus 91 ~~~m~~--~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~p~~~t~~~ll~~~~ 141 (600)
+++... |+..-...+..+|++-+.+.+ |+++++... .+.+.|-++++...
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slil 155 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHH
Confidence 777665 443344445556666655543 444444221 23445555555443
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.84 E-value=0.00057 Score=58.64 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA----IIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 414 (600)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555431110 0122223445555566666666666555 111222 223334455555666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
|+..++.. .-.+-.+..+..++++|...|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66665442 12222334455566666666666666666553
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.005 Score=55.64 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=108.1
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 269 ITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
+-+...+|+.+.|..+++.+..+ -+.-..+| -+-..|++++|+++++...+.. +.|.+++.-=+...-..|+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCC
Confidence 33444456666666665554331 11111111 2334688889999999988874 4455566555555556677
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVA 418 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~ 418 (600)
--+|++-+....+. +..|.+.|.-+.++|...|++++|.--++++ -+.| ++..+..+...+... .+.+.|...
T Consensus 136 ~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 136 NLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred cHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77888887777775 4788999999999999999999999999988 3345 455555665554433 367888999
Q ss_pred HHHHhccCCCCCchHH
Q 007517 419 AKKLLQLEPKNAGPYI 434 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~ 434 (600)
+.+++++.|.+.....
T Consensus 214 y~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 214 YERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHhChHhHHHHH
Confidence 9999999996544333
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.2e-05 Score=46.96 Aligned_cols=31 Identities=48% Similarity=0.798 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999999988764
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.81 E-value=0.00019 Score=55.93 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
+..+...+.+.|++++|...+++. ...| +...+..+...+...|+++.|...+++.....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888776 3334 34667777777888888888888888888888888777888888888888
Q ss_pred CchHHHHHHHHHHh
Q 007517 445 RFHDVAELRKNMRK 458 (600)
Q Consensus 445 ~~~~a~~~~~~m~~ 458 (600)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
No 148
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0047 Score=56.20 Aligned_cols=243 Identities=11% Similarity=0.080 Sum_probs=146.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL 278 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 278 (600)
|+-+.-.|.+..++..-...... +-+...-.-+.+++...|....... .+.... .|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 45566677777776655444332 1333344445556655555433221 122111 22222222222222223333
Q ss_pred HHHH-hhhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 279 VKGK-LIFDNFASK----DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 279 ~~A~-~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++-. ++.+.+..+ +.+....-...|...|++++|++..+.. ...+....+ ...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3322 222333222 2222223344578889999999988762 122222222 2234456788999999999
Q ss_pred hHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
|..- .+..+.+.|..++.+ .+.+.+|.-+|++| +..|+..+.+-...++...|++++|+.+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 8762 345566666666544 45789999999999 4678999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchHHHH-HHHHHH
Q 007517 428 KNAGPYILLSNIYASQGRFHDVAE-LRKNMR 457 (600)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~ 457 (600)
++|.+...++-.-...|+-.++.+ ....++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 998888888877778887766553 344443
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=3.1e-05 Score=59.37 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 377 AGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 377 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
.|++++|..+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 2112344555566677777777777777766 555565555555667777777777777777
Q ss_pred HHH
Q 007517 453 RKN 455 (600)
Q Consensus 453 ~~~ 455 (600)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 150
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.74 E-value=0.056 Score=55.85 Aligned_cols=208 Identities=9% Similarity=0.080 Sum_probs=127.1
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC-CCcchHHHHHHH----------HHhcCChHHHHH
Q 007517 21 MITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE-KDVVAQTNMVLG----------YCQDGRVDEGRE 89 (600)
Q Consensus 21 ~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~----------~~~~g~~~~A~~ 89 (600)
.+++|.++.+. .|.+..|..|...-.+.-.++-|...|-+... +.+..-..|-.. -+--|++++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 35556655554 46777888888777776777777777766552 222111111111 112489999999
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C---CcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccch
Q 007517 90 IFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--K---NEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVAS 164 (600)
Q Consensus 90 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (600)
++-.|.++|. .|..+.+.|++-...++++.--. . -...+..+...++....++.|.+.+..... .
T Consensus 756 ~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~ 825 (1189)
T KOG2041|consen 756 LYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----T 825 (1189)
T ss_pred hhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----h
Confidence 9999888774 45667777888777777765433 1 134677788888888888888887766431 1
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchH
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLD 244 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 244 (600)
...+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .| -..+..|..++.+.
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHH
Confidence 23566666666677666666666653 334445666677777777776655322 1 11 12345566666665
Q ss_pred HHHHHH
Q 007517 245 HGRQVH 250 (600)
Q Consensus 245 ~a~~~~ 250 (600)
+|.++-
T Consensus 896 ~avela 901 (1189)
T KOG2041|consen 896 EAVELA 901 (1189)
T ss_pred HHHHHH
Confidence 555443
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.74 E-value=0.00044 Score=68.97 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...|++++|.+.|.++.+.. +.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|+++.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 3444566666666666665431 233555555566666666666666666555 3333 34455555555666666666
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 007517 415 AEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~ 435 (600)
|...++++++++|+++.....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 666666666666665444333
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0034 Score=56.70 Aligned_cols=162 Identities=18% Similarity=0.222 Sum_probs=127.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
.|..++-+....|+.+.|...++++..+ + |.+.-...+= .-+-..|.+++|.++++.+.++. +.|..+|---+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHH
Confidence 3445566667789999999999999876 3 6554322221 12345689999999999999863 5567788877888
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC---chH
Q 007517 374 LGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR---FHD 448 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~ 448 (600)
.-..|+.-+|.+-+... .+..|...|.-|...|...|+++.|.-.+++++=..|.+|..+..++..+...|- .+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88888888888877766 5567999999999999999999999999999999999999999999999877664 456
Q ss_pred HHHHHHHHHhCC
Q 007517 449 VAELRKNMRKRN 460 (600)
Q Consensus 449 a~~~~~~m~~~g 460 (600)
+++++.+..+..
T Consensus 210 arkyy~~alkl~ 221 (289)
T KOG3060|consen 210 ARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHHhC
Confidence 777777776643
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.00043 Score=57.01 Aligned_cols=93 Identities=20% Similarity=0.122 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSN 438 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 438 (600)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+...+...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444445555555555555444 11121 2233444455555555555555555555554443 233445555
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007517 439 IYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++...|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555443
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.0025 Score=54.63 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=73.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHH
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD----VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYAC 369 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 369 (600)
|..++..+ ..++...+...++.+.... |+. .....+...+...|++++|...|+.+.... ..|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 44444444 3666677777777776642 222 122233455666777777777777776642 1121 123344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
|...+...|++++|+..++..+-. .....+..+...+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 567777777777777777765211 23445566667777778888877777765
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.70 E-value=0.00071 Score=55.63 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLG 404 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~ 404 (600)
+..+...+...|++++|.+.|..+...+.-.+ ....+..+...+.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444555666777777777766665421111 1345556777777777777777777765 22232 455777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888775433
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.7e-05 Score=45.48 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGV 223 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 223 (600)
++||+||++|.+.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877663
No 157
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=0.0001 Score=53.97 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHh
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG-RFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 458 (600)
++.+|..+...+...|++++|+..|+++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788888999999999999999999999999999999999999999999 79999999887764
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0024 Score=66.58 Aligned_cols=139 Identities=13% Similarity=0.047 Sum_probs=74.0
Q ss_pred CCCHHHHHHHHHHHHhc--C---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc--------CCHHHHHHHHHHhH
Q 007517 290 SKDIVMWNSIISGYAQY--G---LGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYT--------GKVKEGREIFESMK 355 (600)
Q Consensus 290 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~--------g~~~~a~~~~~~~~ 355 (600)
..|...|...+.|.... + ...+|..+|++..+. .|+.. .+..+..++... +++..+.+......
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35777888887775432 2 366888888888874 67653 333322222111 11222222222222
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.....+.+...|.++.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11112223455555555555556666666666655 4455555566666666666666666666666666666654
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00033 Score=64.82 Aligned_cols=92 Identities=23% Similarity=0.221 Sum_probs=72.1
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 414 (600)
-..+.+++++|...|....+- .+-|...|..-..+|.+.|.++.|.+-.+.. .+.|. ...|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 355678888888888888762 2345677777788888888888888887776 55564 5578888888888888888
Q ss_pred HHHHHHHHhccCCCCC
Q 007517 415 AEVAAKKLLQLEPKNA 430 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~ 430 (600)
|++.|+++++++|++.
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 8888888888888885
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.00077 Score=59.78 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
...+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445677777788888888888888766 22222 3567888888888999999999999999999988888888888
Q ss_pred HHHhcCC
Q 007517 439 IYASQGR 445 (600)
Q Consensus 439 ~~~~~g~ 445 (600)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8888776
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0028 Score=61.00 Aligned_cols=143 Identities=18% Similarity=0.238 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.+|-.++...-+.+..+.|..+|.+.++.+ ...+.....+.+. +...++.+.|.++|+...+.+ +.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 2233333333333 333577788999999999864 567889999999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|++ .....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~-~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED-NSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHh
Confidence 999999999999999987 22333 3589999999999999999999999999988875 3444444444
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00064 Score=62.92 Aligned_cols=96 Identities=18% Similarity=0.216 Sum_probs=76.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAG 378 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g 378 (600)
.-..+.+++.+|+..|.+.++. .|+ .+-|..=..||++.|.++.|.+-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 3467788999999999999874 554 45566667889999999999988887765 3454 678999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHH
Q 007517 379 QVEDAMKLIEAM-PFEPDAIIWGS 401 (600)
Q Consensus 379 ~~~~A~~~~~~m-~~~p~~~~~~~ 401 (600)
++++|.+.|++. .+.|+..+|..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999998887 77887776544
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.069 Score=52.06 Aligned_cols=112 Identities=14% Similarity=0.210 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..+.+..+.-|...|....|.++-. ++.+ |+..-|...+.+|+..|+|++-.++... +..+.-|...+.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k----~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKK----EFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHH----HcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3456666777788888887777644 4555 8899999999999999999998887654 345678899999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..|+..+|..+..++ .+..-...|.+.|+|.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999888772 2356778899999999998764443
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00023 Score=51.32 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=42.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+...+...|++++|...++++++..|+++..+..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788888888888887787777777788888888888888877777754
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.54 E-value=0.0009 Score=59.11 Aligned_cols=94 Identities=13% Similarity=-0.047 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
....|..++..+...|++++|...|++. .+.|+ ..+|..+...+...|++++|...+++++++.|..+..+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3566777888888899999999998877 33332 347888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCCchHHHHHHHHH
Q 007517 438 NIYA-------SQGRFHDVAELRKNM 456 (600)
Q Consensus 438 ~~~~-------~~g~~~~a~~~~~~m 456 (600)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 788888776666544
No 166
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.53 E-value=0.11 Score=51.15 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHH-HHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEH-YACMV 371 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~li 371 (600)
..|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+..-|..+|+.-...+ ||... -+-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence 467777777777777888888999998888 6677778888887655 578888888888766643 44333 35567
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 372 DLLGRAGQVEDAMKLIEAM--PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.++-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7778888888999999855 22333 5678888888888898888888888888888765
No 167
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.49 E-value=0.044 Score=52.81 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=186.3
Q ss_pred hcCCHHHHHHHHHhcc---cCChhhHHHHHHH--HHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 173 QNGEVQKARVVFDQMR---EKDDATWSGMIKV--YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
-.|+-..|+++-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... ...-..-+..+.-..-+.|+.+.|+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 4678888887766544 3355555555543 34579999999999999762 1111122333444445778888888
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHH--HHHHHHHHHHh---cCChHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIV--MWNSIISGYAQ---YGLGEKSLKVFH 317 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~--~~~~li~~~~~---~g~~~~A~~~~~ 317 (600)
++-+..-..- +.-.....+.+...+..|+++.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-.
T Consensus 175 ~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 8887776654 33456778899999999999999999986543 4442 23344443332 235666776666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH--HHHH--HHHhCCC
Q 007517 318 EMFSSGVMPDDVT-LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE--DAMK--LIEAMPF 392 (600)
Q Consensus 318 ~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~--~~~~m~~ 392 (600)
+..+ +.||-+- -.....++.+.|++.++-.+++.+-+. .|.+..+...+ +.|.|+.. ...+ -++.|
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl-- 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL-- 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--
Confidence 6554 6777653 334457888999999999999998764 57666654433 45666532 2222 23344
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007517 393 EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ-GRFHDVAELRKNMRK 458 (600)
Q Consensus 393 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 458 (600)
+| +..+..++..+-...|++..|..-.+.+....|.. ..|..|+++-... |+-.++...+.+..+
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 45 45667777888889999999999999999999987 7888898887655 999999888776654
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.47 E-value=0.0016 Score=50.48 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+..+...|...|++++|.+.++.. ...| +..++..+...+...|+.+.|...++++.+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3444444444445555555544443 1112 223445555555555555555555555555444
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.0049 Score=54.59 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC 369 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 369 (600)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHH
Confidence 445677777778888888888888888876433332 2456666777778888888888888776632 234556666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
+..+|...|+...+..-++.. ...+++|..+++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 777777777666555333221 112677888999999999876 5555555555554
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.42 E-value=0.0045 Score=52.63 Aligned_cols=89 Identities=8% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
...-+-..|++++|..+|.-+ -.. -+..-|..|..+|...++++.|...+..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999876 112 356678888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 007517 448 DVAELRKNMRK 458 (600)
Q Consensus 448 ~a~~~~~~m~~ 458 (600)
+|+..|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998766
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.40 E-value=0.00059 Score=49.16 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=49.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4456 466788888889999999999999999999999874
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.003 Score=63.04 Aligned_cols=103 Identities=8% Similarity=-0.045 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
...+...|++++|+++|++.++.. +-+...+..+..++...|++++|...++.+.... +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 456678899999999999999852 3345577778889999999999999999998742 3467889999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 007517 380 VEDAMKLIEAM-PFEPDAIIWGSLLGA 405 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p~~~~~~~ll~~ 405 (600)
+++|...|++. .+.|+......++..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999987 556665554444433
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.39 E-value=0.00037 Score=50.77 Aligned_cols=52 Identities=29% Similarity=0.385 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
...|++++|...++++++.+|+++.....++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567788888888888888888877777888888888888888887776654
No 174
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0014 Score=61.02 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=86.2
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
+.|...|-.|...|.+.|+.+.|...|.+. .+.| ++..+..+..++... ....++..++++++.++|.++.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567999999999999999999999999887 3333 566666666665433 35578999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 436 LSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
|+..+...|++.+|...++.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998753
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.016 Score=51.04 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD--DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|+.++|...++...... +.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 34566667777777888888888887765432221 2356666667777777777777777766531 2234445555
Q ss_pred HHHHh
Q 007517 371 VDLLG 375 (600)
Q Consensus 371 i~~~~ 375 (600)
...|.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 55555
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.25 E-value=0.14 Score=49.48 Aligned_cols=107 Identities=11% Similarity=0.100 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcC-CCCCC--hH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-----PDDV-TLVGVLSACSYTGKVKEGREIFESMKSKY-LVEPK--TE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 365 (600)
.+..+...+.+.|++++|+++|++....-.. ++.. .|...+-++...|+...|.+.++...... ++..+ -.
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4455677888899999999999988764322 2221 23333335566789999999998876432 33333 34
Q ss_pred HHHHHHHHHhh--cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007517 366 HYACMVDLLGR--AGQVEDAMKLIEAMPFEPDAIIWGSL 402 (600)
Q Consensus 366 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~p~~~~~~~l 402 (600)
....|++++-. ...+++|..-|+.+. +.|..--..|
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w~~~~l 274 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHHHHHHH
Confidence 45666777654 346788888888874 3444433333
No 177
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.21 E-value=0.00096 Score=49.38 Aligned_cols=57 Identities=12% Similarity=0.167 Sum_probs=49.1
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788899999999999999999988888889999999999999999988887643
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.054 Score=52.29 Aligned_cols=116 Identities=19% Similarity=0.204 Sum_probs=67.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT-GKVKEGREIFESMKSKYLVEPK----TEHYACMVDLL 374 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~ 374 (600)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+-+.-... ...+..+...+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45555666665555554443 2345455 6677777776665543211111 34566677888
Q ss_pred hhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 375 GRAGQVEDAMKLIEAMP---F-----EPDAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.|++++|.++|++.. . +.+.. .+-..+-.+...||...|...+++..+.+|.-.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 88999999999888761 1 11221 223333456677899999999999998888643
No 179
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.20 E-value=0.28 Score=48.57 Aligned_cols=114 Identities=13% Similarity=0.128 Sum_probs=76.1
Q ss_pred ccCC-HHHHHHHHHHhHhcCCCCCChHHHHHHHH----HHhhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHH
Q 007517 340 YTGK-VKEGREIFESMKSKYLVEPKTEHYACMVD----LLGRA---GQ---VEDAMKLIEAMPFEP----DAIIWGSLLG 404 (600)
Q Consensus 340 ~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~---g~---~~~A~~~~~~m~~~p----~~~~~~~ll~ 404 (600)
+.|. -+.|..+++.+.+-. +-|...-|.+.. .|..+ .. +-.-+.++++.++.| +...-|.|..
T Consensus 391 ~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 3444 677788877776521 234433333221 22211 11 122233455556655 3445666666
Q ss_pred H--HHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 405 A--CRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 405 ~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
| +..+|++.++.-....+.++.| ++.+|..++-......+++||..+++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6 5678999999999999999999 7799999999999999999999999864
No 180
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.18 E-value=0.25 Score=47.83 Aligned_cols=249 Identities=15% Similarity=0.102 Sum_probs=149.6
Q ss_pred hHHHHHHHHHH--cCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh--hcchHHHHHHHHHHHHcCCCCchhhH--HH
Q 007517 194 TWSGMIKVYER--KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS--LASLDHGRQVHAQLVRCQFDVDVYVA--SV 267 (600)
Q Consensus 194 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~--~~ 267 (600)
.|.+|-.++.. .|+-..|.+.-.+-.+. +..|...+..++.+-+. .|+.+.|++-|+.|... |..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 45555555544 45555665544443322 45566666677666543 48888888888888752 222211 22
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhc-
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSY- 340 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~- 340 (600)
|.-.--+.|..+.|..+-+..-.. -...|.+.+...+..|+++.|+++++.-+... +.++.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333334578888887777665432 34677888888888888888888888765543 455543 22233332211
Q ss_pred --cCCHHHHHHHHHHhHhcCCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHH-
Q 007517 341 --TGKVKEGREIFESMKSKYLVEPKTEHY-ACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLA- 415 (600)
Q Consensus 341 --~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a- 415 (600)
..+...|+..-.+.. .+.|+..-- ..-...|.+.|++.++-.+++.+ +.+|.+.+|...+. .+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHHHH
Confidence 124555555544433 345664332 23346788888888888888888 55777777654443 355554333
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.+-.+++.++.|++......++.+-...|++..|..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 234455666788888877788888777887766653
No 181
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.42 Score=50.27 Aligned_cols=322 Identities=14% Similarity=0.079 Sum_probs=186.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCCCC---cchHHHHHHHHhcCC---ChHHHHHHHhhCCC--CCccchhHHHHHHHh
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPEKN---EVSWTAMLMGYTQCG---RIQDAWELFKAMPM--KSVVASNSMILGLGQ 173 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~p~---~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~--~~~~~~~~li~~~~~ 173 (600)
-..+|+-++..+.+..|+++-..+..|. ...|.....-+.+.. +-+.+..+-+++.. .....|..+..-...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3456777777888888888888777754 455555555555442 23334444444443 445567777777778
Q ss_pred cCCHHHHHHHHHhcccC--------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 174 NGEVQKARVVFDQMREK--------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
+|+.+-|..+.+.=+.. +..-+..-+.-..+.|+++-...++..|.+.- +...|... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchh
Confidence 88888888887764421 22234445555666677666666665554431 11111111 122333
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhh-hhc-----CCCCHHHHHHHHHHHHhcCC----------h
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIF-DNF-----ASKDIVMWNSIISGYAQYGL----------G 309 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~-~~~-----~~~~~~~~~~li~~~~~~g~----------~ 309 (600)
|..++.+..+..-. ..|-+.|-...+.+++-.+- +.. .+.-+........++++... .
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 44444444432100 11222232222222221111 110 01111122223334444332 1
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 310 EKSLKVFHEMFS-SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 310 ~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
.+-+.+.+.+.. .|..-...|.+-.+.-+...|+..+|.++-.+. . -||...|-.-+.+++..+++++-+++-+
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----k-ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----K-IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----C-CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 122223333322 244455566777777888899999998876554 3 3888999999999999999999888888
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 389 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
++. .+.-|.-...+|.+.|+.++|..++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 740 skk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 740 SKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 763 255677788999999999999988876522 2267889999999999987643
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.17 E-value=0.0012 Score=50.43 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=39.8
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGV-MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++.... + +.+....-.+...|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665421 11233333355566666666666666655111 1 112233334455666666666666
Q ss_pred HHHHh
Q 007517 385 KLIEA 389 (600)
Q Consensus 385 ~~~~~ 389 (600)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 183
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.017 Score=55.96 Aligned_cols=264 Identities=8% Similarity=0.011 Sum_probs=151.0
Q ss_pred HHHHhcCCHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchH
Q 007517 169 LGLGQNGEVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLD 244 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 244 (600)
+.+.+..++.+|+..+....+ | +..-|..-...+...|++++|+--.+.-.+ ++|. ..+....-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 345555666666666655443 2 344455566666666666666655444332 2222 223444444455555555
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHH-HHHHHhcCChHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSI-ISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 318 (600)
+|.+.++.- ..+ ....|+..++.... |--.+|..+ ...+...|++++|...-..
T Consensus 135 ~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 555444310 000 11111222222211 112333333 2345566777777766655
Q ss_pred HHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHhcCCCCCChHH-------------HHHHHHHHhhcCCHHHH
Q 007517 319 MFSSGVMPDDVTLVGVLS--ACSYTGKVKEGREIFESMKSKYLVEPKTEH-------------YACMVDLLGRAGQVEDA 383 (600)
Q Consensus 319 m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 383 (600)
..+. .++. .+..+++ ++-..++.+.|...|++..+ +.|+... +..=.....+.|++.+|
T Consensus 195 ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 195 ILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5543 2211 1111222 23345667777777766543 2333211 12223445678999999
Q ss_pred HHHHHhC-CC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 384 MKLIEAM-PF-----EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 384 ~~~~~~m-~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.+.+.+. .+ +|+...|.....+..+.|+.++|+.--+++++++|.-...|..-++++...++|++|.+.++...
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998877 43 34566677777778889999999999999999999888888889999999999999999998876
Q ss_pred hCC
Q 007517 458 KRN 460 (600)
Q Consensus 458 ~~g 460 (600)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 543
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.018 Score=52.36 Aligned_cols=230 Identities=11% Similarity=0.024 Sum_probs=131.1
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHH-hcCCCh--HHHHHHHhhCCCCCccchhHHHHHHHh
Q 007517 100 ISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGY-TQCGRI--QDAWELFKAMPMKSVVASNSMILGLGQ 173 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~-~~~g~~--~~a~~~~~~~~~~~~~~~~~li~~~~~ 173 (600)
..|+.-+.++++....++|..-+..... ||-+ |...=..+ .+.|.. =..+-+|.++.......+++|++.|.-
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 3466667777887777777655444443 3321 00000000 111211 112234444444555667788887777
Q ss_pred cCCHHHHHHHHHhcccC--Ch--------hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcch
Q 007517 174 NGEVQKARVVFDQMREK--DD--------ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASL 243 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 243 (600)
..-+++-...|+.-..+ .+ ...+.++..+...|.+.-.+..+.+..+...+.++.....+.+...+.|+.
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 66667666666654432 22 234456666666777777777777777765555666667777777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHH-----HHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHH
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVAS-----VLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKV 315 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~-----~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 315 (600)
+.|...++...+..-..+...++ .....|.-..++..|...|++++. .|++.-|.-.-...-.|+..+|++.
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~ 308 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ 308 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH
Confidence 88888777766543333333333 333344556677777777766654 3445555444444445677777777
Q ss_pred HHHHHHCCCCCCHHHHH
Q 007517 316 FHEMFSSGVMPDDVTLV 332 (600)
Q Consensus 316 ~~~m~~~g~~p~~~t~~ 332 (600)
.+.|.+. .|...+-.
T Consensus 309 ~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 309 LEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHhcc--CCccchhh
Confidence 7777664 45444433
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.0014 Score=47.79 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 427 (600)
+...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888889999999999988877 3345 4667888888899998 79999999999998887
No 186
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.06 E-value=0.079 Score=45.73 Aligned_cols=133 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 007517 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIW 399 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~ 399 (600)
..|+...-..|..+....|+..+|...|++...- -+..|....-.+..+....+++.+|...++.+ ...| .+.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677766667888888999999999999887762 34567778888888888899999999888877 1112 22233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
-.+...+...|.++.|+..|+.++.--|.. ..-......+.++|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445677888999999999999999987754 5666677788899999888876665544
No 187
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.06 E-value=0.021 Score=59.78 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=98.2
Q ss_pred CCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 007517 323 GVMPDDVTLVGVLSACSYT-----GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRA--------GQVEDAMKLIE 388 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 388 (600)
+.+.|...|...+.+.... +..+.|..+|++..+. .|+ ...|..+..+|... +++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566778888888875443 3377899999999874 566 45555544444322 23445555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 389 AM---P-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 389 ~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+. + ...+...|..+.-.....|++++|...++++++++|+ ...|..++.+|...|+.++|.+.+++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 2335677887777777889999999999999999995 6899999999999999999999999887644
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.05 E-value=0.00087 Score=48.78 Aligned_cols=61 Identities=21% Similarity=0.311 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSL 402 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 402 (600)
..|++++|.++|+.+.... +.+...+..++.+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3566666666666665542 335555566666666666666666666666 334554444333
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.05 E-value=0.011 Score=59.30 Aligned_cols=120 Identities=16% Similarity=0.070 Sum_probs=87.0
Q ss_pred CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHH
Q 007517 222 GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC--QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVM 295 (600)
Q Consensus 222 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~ 295 (600)
+.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. +|..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788888877888888777777665 2223344556888888888888888887765443 67788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777666666554
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.03 E-value=0.00036 Score=42.48 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=30.7
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999863
No 191
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.98 E-value=0.45 Score=47.06 Aligned_cols=141 Identities=16% Similarity=0.260 Sum_probs=95.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTL-VGVL 335 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll 335 (600)
..++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++. |+..-|..+|+--... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45677777777777778888888876643 577788888877664 5667888888765443 4555433 3445
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACR 407 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 407 (600)
.-+...++-+.|+.+|+....+ +..+ ...|..+++--..-|++..|..+=+++ ..-|...+-....+-|.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 5667788999999999966553 3333 568889999888899998887776666 22344433333333333
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.97 E-value=0.01 Score=48.37 Aligned_cols=86 Identities=19% Similarity=0.118 Sum_probs=54.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYILLSNIYA 441 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 441 (600)
+..++-..|+.++|..+|++. +.... ...+-.+.+.+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555666666666666655 22221 234555666777777777777777777776666 4445555666777
Q ss_pred hcCCchHHHHHHHH
Q 007517 442 SQGRFHDVAELRKN 455 (600)
Q Consensus 442 ~~g~~~~a~~~~~~ 455 (600)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776554
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.025 Score=48.71 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=90.2
Q ss_pred CCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCch
Q 007517 358 YLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGP 432 (600)
Q Consensus 358 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 432 (600)
..+.|++..--.|...+.+.|+..||...|++. .+.-|....-.+..+....++...|...++++.+..|. .|.+
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345688888889999999999999999999988 45668888899999999999999999999999998775 5677
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++..|...|++++|+..|+...+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 889999999999999999999987764
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.92 E-value=0.0067 Score=58.48 Aligned_cols=256 Identities=11% Similarity=0.026 Sum_probs=144.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCc----hhHhhHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHH
Q 007517 202 YERKGYELEVIDLFTLMQKEGVRVNF----PSLISVLSVCASLASLDHGRQVHAQLVR----CQFD-VDVYVASVLITMY 272 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y 272 (600)
+++.|+....+.+|+...+.|. -|. ..|+.+-+++..++++++|.++|..=+. .|-. -.......|.+.+
T Consensus 27 Lck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 5666777777777777766652 232 2344455566666777777776643221 0100 0111122233334
Q ss_pred HHcCCHHHHHhhhhhcC-------CC--CHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH---
Q 007517 273 IKCGELVKGKLIFDNFA-------SK--DIVMWNSIISGYAQYGL--------------------GEKSLKVFHEMF--- 320 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~--- 320 (600)
--.|.+++|.-.-.+-. .+ ....+..+...|...|+ ++.|.++|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543322111 00 12233444444443321 233444443321
Q ss_pred -HCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH---hHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----
Q 007517 321 -SSGVM-PDDVTLVGVLSACSYTGKVKEGREIFES---MKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM---- 390 (600)
Q Consensus 321 -~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~---~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 390 (600)
+.|-. .-...|..|-..|.-.|+++.|...++. +.+.+|-.. ....++.+...+.-.|+++.|.+.++..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11100 0112344454555556889999887764 223333221 2456788888999999999999988754
Q ss_pred ---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 391 ---PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL----E--PKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 391 ---~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+- .-...+..+|.+.|....++++|+.++.+-+.+ + .....++..|+++|...|..++|..+.+.-.+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 21 123556778889999889999999988775542 1 22346788999999999999999877665543
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.73 Score=48.58 Aligned_cols=322 Identities=14% Similarity=0.132 Sum_probs=146.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHccCCCCC---cchHHHHHHHHHhcCC---hHHHHHHHhhCCC--CCcccHHHHHHHHHhC
Q 007517 41 TVMLGGFIRDSRIDDARRLFDMMPEKD---VVAQTNMVLGYCQDGR---VDEGREIFDEMPK--KNVISWTTMISGYVNN 112 (600)
Q Consensus 41 ~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~---~~~A~~~~~~m~~--~~~~~~~~li~~~~~~ 112 (600)
..+++-+...+.+..|+++-..+..|. ...+.....-+.+..+ -+-+..+=+++.. ...++|..+.+-....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 335566666777888888777776554 4555556666665532 2233333334444 4556777777777777
Q ss_pred CChHHHHHHHhhcCC--------CCcchHHHHHHHHhcCCChHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHH
Q 007517 113 NRIDVARKLFEVMPE--------KNEVSWTAMLMGYTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVV 183 (600)
Q Consensus 113 g~~~~A~~~~~~m~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~ 183 (600)
|+++-|..+++.=.. -+..-+...+.-+...|+.+...+++-++. ..+...+. .-..+.-.|..+
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~------~~l~~~p~a~~l 594 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF------MTLRNQPLALSL 594 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH------HHHHhchhhhHH
Confidence 888877777654322 122233344444455555554444443332 00000000 001111222222
Q ss_pred HHhccc-CChhhHHHHHHHHHHcCChHHHHHHHH--HHHH-cCCccCchhHhhHHHHHhhhcchHHHHHHHH--------
Q 007517 184 FDQMRE-KDDATWSGMIKVYERKGYELEVIDLFT--LMQK-EGVRVNFPSLISVLSVCASLASLDHGRQVHA-------- 251 (600)
Q Consensus 184 f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------- 251 (600)
|.+.-+ .|..+ +-..|-+..+. +++.-|. .... .-+.+-........++|++........+..+
T Consensus 595 Y~~~~r~~~~~~---l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 595 YRQFMRHQDRAT---LYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred HHHHHHhhchhh---hhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 222211 11110 11111111122 1111111 1000 0011111222233334444333111111111
Q ss_pred --HHH-HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007517 252 --QLV-RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD 328 (600)
Q Consensus 252 --~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 328 (600)
.+. +.|..-.-.+.+--+.-+..-|+..+|.++-.+.+-||-..|-.-+.+++..+++++-+++-+.+. + +
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s-P 744 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S-P 744 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-C
Confidence 111 112112222223333444556677777777666666666666666677777776666555544432 1 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
.-|.....+|.+.|+.++|.+++.+.. |. . -.+.+|.+.|++.+|.++--
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHH
Confidence 445556667777777777776665432 11 1 45666677777766665543
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.90 E-value=0.016 Score=45.64 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHhcCCCCCChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPDDVTLVGVLSACSYTG--------KVKEGREIFESMKSKYLVEPKTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~p~~~ 365 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+..+.. ++-+...+++.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666777999999999999999999 899999999998876543 244566777777764 6888888
Q ss_pred HHHHHHHHHhh
Q 007517 366 HYACMVDLLGR 376 (600)
Q Consensus 366 ~~~~li~~~~~ 376 (600)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.86 E-value=0.015 Score=45.70 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-ccCchhHhhHHHHHhhhc--------chHHHHHHHHHHHHcCCCCchhh
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGV-RVNFPSLISVLSVCASLA--------SLDHGRQVHAQLVRCQFDVDVYV 264 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 264 (600)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 899999999999877543 34456778889999999999999
Q ss_pred HHHHHHHHHH
Q 007517 265 ASVLITMYIK 274 (600)
Q Consensus 265 ~~~li~~y~~ 274 (600)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887665
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.86 E-value=0.028 Score=45.81 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccC--chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC--CchhhHHHHHHHHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVN--FPSLISVLSVCASLASLDHGRQVHAQLVRCQFD--VDVYVASVLITMYI 273 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~ 273 (600)
+..++...|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........ .+..+...+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667778888888888888888776544 234555666667777777777777766654211 01122222333445
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGY 303 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 303 (600)
..|+.++|.+.+-....++...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555444433333343333333
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.82 E-value=0.19 Score=49.58 Aligned_cols=159 Identities=19% Similarity=0.097 Sum_probs=95.3
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---C----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---D----IVMWNSIISGYAQ---YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
++-.|-...+++...++++.+... + ...-....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344566677777777777776653 1 1111223334455 67888888888886655566777777666554
Q ss_pred Hh---------ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---HhC-------CCCC
Q 007517 338 CS---------YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE----DAMKLI---EAM-------PFEP 394 (600)
Q Consensus 338 ~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~~p 394 (600)
|- ....+++|...|.+.- .+.|+..+--.++..+...|... +..++- ... .-..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 42 1223666766666543 34455444334444444444322 222222 111 1124
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|-..+.+++.++.-.|+.+.|.+.++++..+.|+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 56667889999999999999999999999998865
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.78 E-value=0.011 Score=55.96 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILL 436 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 436 (600)
..|..-+..+.+.|++++|...|+.. ...|+ ...+.-+...+...|+++.|...|+++++..|+++ ..+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777766 22233 23455566777778888888888888887766643 344556
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+|...|++++|.++++...+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877653
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.75 E-value=0.02 Score=50.95 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=70.3
Q ss_pred Hhhhhhc--CCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 007517 282 KLIFDNF--ASKDIVMWNSIISGYAQ-----YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT------------- 341 (600)
Q Consensus 282 ~~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 341 (600)
...|+.. ..+|-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677788888888765 467777778888999999999999999999877542
Q ss_pred ---CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 342 ---GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 342 ---g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
.+-+-|.+++++|.. +|+-||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 134557777777765 4777777777777777766654
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.015 Score=56.03 Aligned_cols=129 Identities=13% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVEDAMKLIEAM--PFEPDAIIWGSLLGA 405 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 405 (600)
.+|..++..+-+.+..+.|+++|....+.. ..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467778888888889999999999998642 2345666666666455 56677799999987 445678889999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...++.+.|..+|++++..-|... ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 35777777778889999999999998764
No 203
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.72 E-value=0.048 Score=46.27 Aligned_cols=90 Identities=4% Similarity=-0.028 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
++..-+...|++++|.++|+.+.. .+..-|-.|...+-..|++++|+..|....... +-|...+-.+-.++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445566777777777765543 355566667777777777777777777766643 2334455556666667777
Q ss_pred HHHHHHHHHHhHhc
Q 007517 344 VKEGREIFESMKSK 357 (600)
Q Consensus 344 ~~~a~~~~~~~~~~ 357 (600)
.+.|++.|+.....
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766554
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.71 E-value=0.21 Score=46.89 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=101.3
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC--CC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS--KD-IVM---WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY- 340 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~--~~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~- 340 (600)
....+.+.|++++|.+.|+.+.. |+ ... .-.++.+|.+.+++++|...|++..+.-..-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445667888888888877754 21 122 233556777888888888888888775222122333333333321
Q ss_pred -cC---------------C---HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007517 341 -TG---------------K---VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401 (600)
Q Consensus 341 -~g---------------~---~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 401 (600)
.+ + ...|...|+.+.+++ |+ ..-..+|..-+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 10 1 223444455554443 22 223344444333321000000 013
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+..-|.+.|.+.-|..-++.+++.-|+. +.....+..+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455788899999999999999877765 3456678899999999999999887664
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.15 Score=46.55 Aligned_cols=167 Identities=12% Similarity=0.001 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCC--CCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFAS--KDI--------VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV 334 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 334 (600)
+++|+..|.-..-+++-...|+.-.. ..+ ..-+.++....-+|.+.-.+.++++.++..-+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45565555555555555555543332 222 33456667777788888889999999887555566777778
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCC----CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYL----VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE--PDAIIWGSLLGACRT 408 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~~ 408 (600)
.+.-.+.|+.+.|..+|+...+..+ +.....+.......|.-++++.+|...+.+.+.. .|+...|.=.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 8888899999999999997665432 2223333344445666777888888888877322 234444443334445
Q ss_pred cCCHHHHHHHHHHHhccCCCCCc
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.|+...|.+..+.+++..|....
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccch
Confidence 67888888888888888887533
No 206
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.67 E-value=0.017 Score=58.01 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=71.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh
Q 007517 167 MILGLGQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 240 (600)
+++......+++.+..++.+.... -..|..++|+.|...|..++++.+++.=.+.|+-||.+|++.++..+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 344444444555555555544421 23345677778888888888888777777778888888888888888888
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
|++..|.++...|...+...+..++..-+..+.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888777777776655555555444444444
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.61 E-value=0.0086 Score=59.52 Aligned_cols=63 Identities=16% Similarity=0.090 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA----IIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
+...++.+..+|.+.|++++|...|++. .+.|+. ..|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566666777777777777777777664 445553 34666777777777777777777777665
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.56 E-value=0.0075 Score=44.46 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
-..|.+.+++++|.++++.+ ...| +...|......+...|+++.|...+++.++..|+++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35678888888888888887 4445 466677788888889999999999999999999875443
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.54 E-value=1.5 Score=47.27 Aligned_cols=181 Identities=15% Similarity=0.180 Sum_probs=103.6
Q ss_pred hHHHHHHHHH--hCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCc--chHHHHHHHHHh
Q 007517 8 SWTAMVRGYV--EEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDV--VAQTNMVLGYCQ 80 (600)
Q Consensus 8 ~~~~ll~~~~--~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~ 80 (600)
.|..++.++. +.|+.++|..+++... ..|..|...+-..|...|..++|..+|++....++ .....+..+|+|
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHH
Confidence 3666666664 6788888888877665 34677888888888888999999999988875433 344455566777
Q ss_pred cCChH----HHHHHHhhCCCCCcccHHHHHHHHHhC-CChHH---------HHHHHhhcCC-C-Ccch---HHHHHHHHh
Q 007517 81 DGRVD----EGREIFDEMPKKNVISWTTMISGYVNN-NRIDV---------ARKLFEVMPE-K-NEVS---WTAMLMGYT 141 (600)
Q Consensus 81 ~g~~~----~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~---------A~~~~~~m~~-p-~~~t---~~~ll~~~~ 141 (600)
.+++. .|.+++...+++--.-|+.+ +.+.+. ..+++ |.+.++.+.+ + ...+ ...-+..+.
T Consensus 123 ~~~yk~qQkaa~~LyK~~pk~~yyfWsV~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~ 201 (932)
T KOG2053|consen 123 EKSYKKQQKAALQLYKNFPKRAYYFWSVI-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILE 201 (932)
T ss_pred HHHHHHHHHHHHHHHHhCCcccchHHHHH-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHH
Confidence 76654 46677776666555556543 333322 22222 3333333333 2 1111 111122334
Q ss_pred cCCChHHHHHHHhhCC-----CCCccchhHHHHHHHhcCCHHHHHHHHHhccc
Q 007517 142 QCGRIQDAWELFKAMP-----MKSVVASNSMILGLGQNGEVQKARVVFDQMRE 189 (600)
Q Consensus 142 ~~g~~~~a~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 189 (600)
..|++++|..++..-. ..+...-+.-++.+.+.+++.+-.++-.++..
T Consensus 202 ~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 202 LQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred hcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4566777776663222 33333344555666667776665555555443
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.32 Score=50.09 Aligned_cols=125 Identities=19% Similarity=0.196 Sum_probs=73.7
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
...++...|+.++|..+ .+.+|-.+-++++-+++-. .+..+...+..-+.+...+..|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 44555556666666443 3445555555555544422 2334444444445556667777
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHH-HHH----------HHHHHHHcCCHHHH
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP-FEPDAII-WGS----------LLGACRTHMKLDLA 415 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-~~~----------ll~~~~~~g~~~~a 415 (600)
-++|.+|-. ...++++....+++++|..+-++.| +.||+.. |.. --.+|.+.|+..+|
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 788877643 2357788888888888888888873 4444332 211 22456667777777
Q ss_pred HHHHHHHhc
Q 007517 416 EVAAKKLLQ 424 (600)
Q Consensus 416 ~~~~~~~~~ 424 (600)
.++++++..
T Consensus 837 ~~vLeQLtn 845 (1081)
T KOG1538|consen 837 VQVLEQLTN 845 (1081)
T ss_pred HHHHHHhhh
Confidence 777777654
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.52 E-value=0.1 Score=53.49 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCC
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMP 64 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 64 (600)
.+.+.+-+..|...|.+.+|.++-.--. ...-|.-|.......=+++-|++.|.+..
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgV--v~~DW~~LA~~ALeAL~f~~ARkAY~rVR 612 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGV--TDTDWRELAMEALEALDFETARKAYIRVR 612 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccce--ecchHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 3445566667778888888776432211 11124444433333445556665555443
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.50 E-value=0.0043 Score=40.45 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
.+|..+..++...|++++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999877776653
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.50 E-value=0.75 Score=43.13 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=25.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCch-hH---hhHHHHHhhhcchHHHHHHHHHHHHc
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFP-SL---ISVLSVCASLASLDHGRQVHAQLVRC 256 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~ 256 (600)
...+.+.|++++|.+.|+++...- |+.. .. ..+..++-+.++++.|...++..++.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445556666666666555532 2211 11 12233444445555555555554443
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.49 Score=46.29 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=84.5
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH--HHHHcCCHHHHHhhhhhcCCCCHH---------------HHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT--MYIKCGELVKGKLIFDNFASKDIV---------------MWNSII 300 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~li 300 (600)
...|+.+.|.++-..+++..- .+ .+..++. ++--.++.+.|...|++...-|+. .|..=.
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~-~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDA-TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhcccchhHHHHHHHHHhccc-ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence 455666666666666655431 11 1111111 222346667777777665542221 222223
Q ss_pred HHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhh
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSS---GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGR 376 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~ 376 (600)
.-..+.|++.+|.+.|.+.+.. .++|+...|.....+..+.|+.++|..--+...+ +.|. +..|..-..++.-
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHH
Confidence 3456788888888888888753 2444455566666677788888888887776653 2222 2233333445566
Q ss_pred cCCHHHHHHHHHhC
Q 007517 377 AGQVEDAMKLIEAM 390 (600)
Q Consensus 377 ~g~~~~A~~~~~~m 390 (600)
.++|++|.+-+++.
T Consensus 334 le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888887765
No 215
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.044 Score=53.40 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=70.3
Q ss_pred HHHhhcCCHHHHHHHHHhC--------CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 372 DLLGRAGQVEDAMKLIEAM--------PFE---------PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m--------~~~---------p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
..|.+.|++..|...|++. +.. .-..++..|..+|.+.+++..|+....+.++++|+|.....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 4456667776666666553 111 12345677778888999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.-+.+|...|.++.|+..|+++.+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.35 E-value=0.062 Score=50.85 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLL 403 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll 403 (600)
.|...+......|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ |..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444333455777888877877777542111 1345667778888888888888888777 2222 244455566
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 677788999999999999999888863
No 217
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=2 Score=45.79 Aligned_cols=99 Identities=9% Similarity=0.171 Sum_probs=59.8
Q ss_pred HHHHHcCCCHHHHHHHHccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 007517 44 LGGFIRDSRIDDARRLFDMMPEK-----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVA 118 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
+..+.+.+.+++|..+-+..... -...+...|..+.-.|++++|-.+.-.|...+..-|.--+.-+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 44555667777777776665532 1235666777777778888887777777777777777777767666665443
Q ss_pred HHHHhhcCC-CCcchHHHHHHHHhc
Q 007517 119 RKLFEVMPE-KNEVSWTAMLMGYTQ 142 (600)
Q Consensus 119 ~~~~~~m~~-p~~~t~~~ll~~~~~ 142 (600)
..++=.-.. .+...|..+|-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 322211111 234456666655554
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.29 E-value=0.034 Score=49.53 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=68.6
Q ss_pred HHHHHhc--ccCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-------------
Q 007517 181 RVVFDQM--REKDDATWSGMIKVYERK-----GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL------------- 240 (600)
Q Consensus 181 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 240 (600)
...|++. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556665 456777888888877654 66666777788888888888888888888876431
Q ss_pred ---cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 241 ---ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 241 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
.+-+.|..++++|...|+-||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234567777777777777777777777777666544
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.25 E-value=0.018 Score=55.65 Aligned_cols=127 Identities=10% Similarity=-0.015 Sum_probs=86.9
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHHHHcCCHHHHHhhhhhcC-------CC--CHH
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVR----CQFD-VDVYVASVLITMYIKCGELVKGKLIFDNFA-------SK--DIV 294 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~--~~~ 294 (600)
.|..+-+.+.-+|+++.|...|+.-.. .|-. .....+..|.++|.-.|+++.|.+.|.... .+ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555566667889999888875433 2311 234566778888999999999988887532 23 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFS----SG-VMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+..+|...|.-..++++|+.++.+-.. .+ ..-....+-+|-.++...|.-++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 667788888888889999988876432 11 22334567788888888898888887765543
No 220
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.19 E-value=1.9 Score=44.57 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=121.4
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM--PDDVTLVGV 334 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~l 334 (600)
++..+|..-++.-.+.|+.+.+.-.|++..-| -...|--.+.-.-..|+.+-|-.++....+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 34567778888888899999999999887654 2234444444334448888887777665543322 322333333
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAM---KLIEAM-PFEPDAIIWGSLLG----- 404 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~----- 404 (600)
-+-..|+...|..+++.+.+++ |+ +..-.--+.+..|.|..+.+. +++... +.+-+..+...+.-
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3456789999999999998864 44 444445567788899999888 555544 22223333222222
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
.+...++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 23456899999999999999999998888888888776653
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.15 E-value=0.058 Score=44.49 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 007517 359 LVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGA 405 (600)
Q Consensus 359 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~ 405 (600)
.+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.=
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555566666666666666665555544 444445555555543
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.009 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHh
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~ 389 (600)
+|+.+...|.+.|++++|++.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~ 30 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEK 30 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444455555544444443
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.12 E-value=1.7 Score=43.34 Aligned_cols=377 Identities=11% Similarity=0.092 Sum_probs=177.1
Q ss_pred HHHHHHHH--HhCCChHHHHHHHhhCCC------------------CCcchHHHHHHHHHcCCCHHHHHHHHccCCC---
Q 007517 9 WTAMVRGY--VEEGMITEAGTLFWQMPE------------------KNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--- 65 (600)
Q Consensus 9 ~~~ll~~~--~~~g~~~~A~~~~~~m~~------------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--- 65 (600)
|-.+..++ -+.+.+.+|++.+..... +|.+.-+..+..+...|++.+++.++++|.+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll 159 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL 159 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence 44444433 367888888888765541 2334456667888899999999999888862
Q ss_pred -----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 007517 66 -----KDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGY 140 (600)
Q Consensus 66 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~ 140 (600)
-+..+||.++-++++.=-++- -+.+...=..-|--||-.|.+.=..-++... +... |....+..++.-.
T Consensus 160 krE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d~~~Y-~k~~-peeeL~s~imqhl 233 (549)
T PF07079_consen 160 KRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFDQRPY-EKFI-PEEELFSTIMQHL 233 (549)
T ss_pred hhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHhhchH-HhhC-cHHHHHHHHHHHH
Confidence 367778876666655311111 1111111111244445455433111111000 0000 2222222222211
Q ss_pred hcC-----CChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhcc--------cCChhhHHHHHHHHHHc
Q 007517 141 TQC-----GRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMR--------EKDDATWSGMIKVYERK 205 (600)
Q Consensus 141 ~~~-----g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~~~ 205 (600)
.-. --+-.+...++.-- +....+...|+.-+.+ +.+++..+.+.+. ++=+.++..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00111122222111 2222233344444443 3333333333222 23456788888888899
Q ss_pred CChHHHHHHHHHHHHcCCccCchhHhh-------HHHHHh-hh---cchHHHHHHHHHHHHcCCCCchhhHHHHH---HH
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFPSLIS-------VLSVCA-SL---ASLDHGRQVHAQLVRCQFDVDVYVASVLI---TM 271 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~ 271 (600)
++..+|...+.-+.-- .|+...-.- +-+..+ .- -++..=..+++.+....+... ....-|+ .-
T Consensus 312 ~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~ 388 (549)
T PF07079_consen 312 VQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKH 388 (549)
T ss_pred HhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHH
Confidence 9998888877766542 333221111 111111 11 111122223333333222111 1111122 22
Q ss_pred HHHcCC-HHHHHhhhhhcCC---CCHHHHHHHH----HHHHhc---CChHHHHHHHHHHHHCCCCCCHHHH----HHHHH
Q 007517 272 YIKCGE-LVKGKLIFDNFAS---KDIVMWNSII----SGYAQY---GLGEKSLKVFHEMFSSGVMPDDVTL----VGVLS 336 (600)
Q Consensus 272 y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~ 336 (600)
+-+.|. -++|.++++.+.. .|..+-|.+. .+|.+. ....+-+.+-+-..+.|+.|-.+.= +.+..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 334444 6667777766543 3444333322 223221 1233334444444556766644322 22222
Q ss_pred H--HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007517 337 A--CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS 401 (600)
Q Consensus 337 a--~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 401 (600)
| +...|++.++.-+-.-+.+ +.|++.+|..+.-.+....++++|...+..+| |+..+|++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 2 3345777776554444433 57788888888777778888888888888875 56666654
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.02 E-value=0.093 Score=43.27 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=46.7
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 323 GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
...|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999988888998888643
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.97 E-value=0.56 Score=38.18 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=80.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+-+.+ ..+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHHH
Confidence 356666777777666542 23334444443333333444444555554443222 3455555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
.-+-.++ .+......-++.....|.-+.-.+++..+.+-+..+|....-++++|.+.|+..++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5554443 234445666788889999999999999888655556788899999999999999999999999999874
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.96 E-value=0.01 Score=44.44 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 396 AIIWGSLLGACRTHMKLDLAEVAAKKLLQL----EPKN---AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 396 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+++.+...|...|++++|+..+++++++ .+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346888999999999999999999998864 2222 45688899999999999999999987653
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.87 E-value=1.4 Score=40.16 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 382 (600)
..-|.+.|.+..|..-++.+.+++.-.+. ......++..|.+.|..+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 34455666666666666666665411111 2233445555555555553
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.69 E-value=1.6 Score=39.82 Aligned_cols=195 Identities=19% Similarity=0.156 Sum_probs=118.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFA-----SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
..........+...+.+..+...+.... ......+......+...+....+.+.+.........+.. .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHH
Confidence 3455556666666666666666665543 234455555566666666677777777776654333211 1111222
Q ss_pred -HHhccCCHHHHHHHHHHhHhcCCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 007517 337 -ACSYTGKVKEGREIFESMKSKYLV--EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 337 -a~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g 410 (600)
++...|+.+.+...+...... .- ......+......+...++.++|...+... ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 566777777777777776431 10 122334444444466677777777777766 32333 566777777777777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+.+.|...+.......|.....+..+...+...|.++++...+....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888887776445566666666666667777777666654
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.65 E-value=0.044 Score=46.94 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
....++..+...|+++.|....++++..+|-+...|..++.+|...|+..+|.++|+.+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999988999999999999999999999998853
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.65 E-value=1.1 Score=40.73 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
+-.....+.+.|++++|++.|+++...-.. |- ......+..++.+.|+++.|...++...+.++-.|.. -+.....+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHH
Confidence 334455566677777777777777654211 11 1234455666777777777777777776655333321 11111111
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----------------HHHH
Q 007517 374 LGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----------------YILL 436 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l 436 (600)
.+......... ......+....|...++.+++.-|+++.. -..+
T Consensus 87 ~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 00111223345555555555555554321 2346
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..|.+.|.+..|..-++.+.+.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 78899999999999999988764
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.53 E-value=0.13 Score=41.67 Aligned_cols=89 Identities=17% Similarity=0.148 Sum_probs=68.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHhcCC
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA----GPYILLSNIYASQGR 445 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 445 (600)
-++...|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|+.-+++++++.-+.. ..|+.-+..|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888776 3333 567788888888889999999988888888643322 347777888888999
Q ss_pred chHHHHHHHHHHhCC
Q 007517 446 FHDVAELRKNMRKRN 460 (600)
Q Consensus 446 ~~~a~~~~~~m~~~g 460 (600)
-+.|+.-|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999998888887766
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.49 E-value=0.094 Score=52.41 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT----EHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
...++.+..++...|++++|...|+...+. .|+. ..|..+..+|...|++++|.+.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345666666677777777777777666542 4442 23666777777777777777766665
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.47 E-value=4.1 Score=42.88 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=117.3
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-CCcccH------------HHHHHHHHhCCChHHHH
Q 007517 53 IDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK-KNVISW------------TTMISGYVNNNRIDVAR 119 (600)
Q Consensus 53 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~------------~~li~~~~~~g~~~~A~ 119 (600)
+++|.+..+. .|.+..|..|...-.+.-.++.|+..|-+... +.+..- .+=|.+| -|++++|.
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhh
Confidence 3444443333 34556677776666666667777766665543 111111 1112222 36677777
Q ss_pred HHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCC---ccchhHHHHHHHhcCCHHHHHHHHHhcccCChhh
Q 007517 120 KLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKS---VVASNSMILGLGQNGEVQKARVVFDQMREKDDAT 194 (600)
Q Consensus 120 ~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 194 (600)
+++-+|.+.|. .+....+.|++-...++++.-- ..| ...++.+...+.....+++|.+.+..-...
T Consensus 755 k~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---- 825 (1189)
T KOG2041|consen 755 KLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---- 825 (1189)
T ss_pred hhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----
Confidence 77766654332 2344445555555555554322 111 123444555555544555555444432210
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
...+.++.+...+++-..+- ..++-|...+-.+...+.+.|.-++|.+.|-+ .+.+ .+.+..+..
T Consensus 826 -e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHH
Confidence 01222222222222222111 12334555556666777777777777665532 2211 234556666
Q ss_pred cCCHHHHHhhhhhcCCCCHHHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007517 275 CGELVKGKLIFDNFASKDIVMWNS--------------IISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
..++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 891 LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 777777777776655554433211 13344556666666666666643
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=0.8 Score=46.10 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=102.4
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------ccCCHHHHHHHHHHhH
Q 007517 294 VMW--NSIISGYAQY-----GLGEKSLKVFHEMFS-SGVMPDDV-TLVGVLSACS---------YTGKVKEGREIFESMK 355 (600)
Q Consensus 294 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~~~ 355 (600)
..| ...+.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++. ......+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 134678889998872 23567654 3333222211 1234556666666666
Q ss_pred hcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 356 SKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 356 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+-. +.|+.....+..++.-.|+++.|..+|++. .+.|| ..+|......+...|+.++|.+.++++++++|.....-
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 531 446777778888888888899999999988 56676 55677777777888999999999999999999864443
Q ss_pred H--HHHHHHHhcCCchHHHHHHH
Q 007517 434 I--LLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 434 ~--~l~~~~~~~g~~~~a~~~~~ 454 (600)
. ..++.|...+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 3 3344566655 466666544
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.34 E-value=0.39 Score=40.12 Aligned_cols=59 Identities=24% Similarity=0.271 Sum_probs=37.7
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 373 LLGRAGQVEDAMKLIEAM----PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
...+.|++++|.+.|+.+ |..| ..-.--.|+.++.+.++++.|...+++.++++|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 334566677776666665 2222 2333445667777778888888888888887777643
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=95.24 E-value=0.35 Score=48.54 Aligned_cols=117 Identities=10% Similarity=0.088 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcC
Q 007517 343 KVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGR---------AGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHM 410 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 410 (600)
..+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.| |+.....+..+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467788889988854456666 4555555544332 23345666666655 3333 6777777777778888
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 411 KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+.|...|+++..++|+.+..+...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999998875543
No 237
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=1.2 Score=42.02 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG---QVEDAMKLIEAM-PFEP-DAIIWGS 401 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p-~~~~~~~ 401 (600)
|...|..|-.+|...|+.+.|...|....+-. .+++..+..+..++.... ...++.++|+++ ...| |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44566666667777777777777776665532 345566666665554332 345677777776 3445 3445555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|...+...|++.+|...+++|++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 6667788888888888888888877665
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.23 Score=48.62 Aligned_cols=138 Identities=14% Similarity=0.050 Sum_probs=97.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
...|.+.|++..|...|++.... |. +...-+.++..... ..-..++..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 35677888888888888876542 11 01111112222211 1224467778889999999
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH-HHHHHHH
Q 007517 380 VEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV-AELRKNM 456 (600)
Q Consensus 380 ~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m 456 (600)
+.+|++..+.. .. ++|....-.=..+|...|+++.|...|+++++++|+|-..-..|+.+-.+...+.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988877 22 456777777788999999999999999999999999977777777776666555544 7888888
Q ss_pred HhC
Q 007517 457 RKR 459 (600)
Q Consensus 457 ~~~ 459 (600)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 653
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=0.17 Score=46.94 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHH
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYIL 435 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~ 435 (600)
.|+.-++.| +.|++.+|...|... ...||..-| |..++...|+++.|...|..+.+-.|+ -|..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 445566666666544 233455555 566677777777777777777765444 3455666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 007517 436 LSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 436 l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+.+..+.|+.++|..++++..++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 777777777777777777777653
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.87 E-value=3 Score=38.01 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=131.8
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-CHHHHHHHHH-H
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--K-DIVMWNSIIS-G 302 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~-~ 302 (600)
..+......+...+.+..+...+...... ........+..+...+...++...+.+.+..... + +...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444455555555566555555555442 2234445555566666667777777777776654 2 2122333333 6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhc
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMP----DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRA 377 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~ 377 (600)
+...|+++.|...|.+... ..| ....+......+...++.+.+...+....... +. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLN--PDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC--cccchHHHHHhhHHHHHc
Confidence 8889999999999999855 333 23344444444667889999999999887642 33 467788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 378 GQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 378 g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998877 33454 455556666666777899999999999998886
No 241
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.73 E-value=0.34 Score=44.81 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHhhhhhcC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 007517 281 GKLIFDNFA--SKDIVMWNSIISGYAQY-----GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG----------- 342 (600)
Q Consensus 281 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------- 342 (600)
.+..|.... ++|-.+|-+++..|..+ +..+-....++.|.+.|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 57888999998888754 566777778899999999999999999999875532
Q ss_pred -----CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH
Q 007517 343 -----KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 343 -----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 380 (600)
+-+-+..++++|.. +|+.||.++-..|+.++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457889999976 69999999999999999998864
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.70 E-value=4.8 Score=41.96 Aligned_cols=78 Identities=15% Similarity=0.023 Sum_probs=36.0
Q ss_pred CChHHHHHHHhhCC--CCCccchh-HHHHHHHhcCCHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCChHHHHH
Q 007517 144 GRIQDAWELFKAMP--MKSVVASN-SMILGLGQNGEVQKARVVFDQMREK-------DDATWSGMIKVYERKGYELEVID 213 (600)
Q Consensus 144 g~~~~a~~~~~~~~--~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 213 (600)
.+.+.+.+++..+. -|+...|. --.+.+...|++++|.+.|++.... ....+--+...+.-..++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 34455555555555 23322222 2223445555666666666543321 11222233444555555666666
Q ss_pred HHHHHHHc
Q 007517 214 LFTLMQKE 221 (600)
Q Consensus 214 ~~~~m~~~ 221 (600)
.|..+.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 66555553
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.68 E-value=0.28 Score=41.90 Aligned_cols=69 Identities=16% Similarity=0.266 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh----cCCCCCChHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS----KYLVEPKTEH 366 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 366 (600)
..++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.++|+.+.+ ..|++|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444555555555555555555431 22344555555555555555555555554422 2355555433
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.62 E-value=1.5 Score=44.42 Aligned_cols=152 Identities=15% Similarity=0.058 Sum_probs=86.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
+..+++.-+++-++..+ +.||-.+...++ +--....+.++++++++..+.. ...+..-- .....|.. .
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s~-~~~~~g~~---~ 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKSQ-FLQHHGHF---W 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchhh-hhhcccch---h
Confidence 34455566666666665 467665543333 3334456788888887765531 00100000 00001111 1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 385 KLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 385 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
+.+..-..+|-..+=..|..++.+.|+.++|.+.++.+++..|. +......|+.++...+.+.++..++.+-.+...+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 11111111233444455777778889999999988888877665 3446777888888889999998888887655555
Q ss_pred cCCcee
Q 007517 463 KPPGCS 468 (600)
Q Consensus 463 ~~~~~s 468 (600)
+....+
T Consensus 328 kSAti~ 333 (539)
T PF04184_consen 328 KSATIC 333 (539)
T ss_pred chHHHH
Confidence 444433
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.49 E-value=2.1 Score=36.15 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA-GQVEDAMKLIEAMPFEPDAIIWGSLLGAC 406 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 406 (600)
......++..|.+.+.++++..++..+.. |...++.+... ++++.|.+++.+- .+...|..++..+
T Consensus 69 ~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~ 135 (140)
T smart00299 69 HYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKAL 135 (140)
T ss_pred cCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 33344455666666666666665554321 11222333333 5666666666652 2455666655554
Q ss_pred H
Q 007517 407 R 407 (600)
Q Consensus 407 ~ 407 (600)
.
T Consensus 136 l 136 (140)
T smart00299 136 L 136 (140)
T ss_pred H
Confidence 3
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.48 E-value=1.9 Score=44.87 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=98.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSG-VMPDD-----VTLVGVLSACS----YTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
+++...-.|+-+.+++++.+..+.+ +.-.. ..|..++..+. .....+.+.++++.+.+++ |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHHHH
Confidence 3444444566666666666654422 21111 12222332222 2456788889998888764 5554443
Q ss_pred -HHHHHHhhcCCHHHHHHHHHhCC-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH-HHHHH
Q 007517 369 -CMVDLLGRAGQVEDAMKLIEAMP-FE-----PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL-LSNIY 440 (600)
Q Consensus 369 -~li~~~~~~g~~~~A~~~~~~m~-~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~ 440 (600)
--...+...|++++|.+.|++.- .+ -....+--+...+...+++++|...+.++.+.+.-+...|.. .+-+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33466778899999999998651 11 123444555666778899999999999999876655455544 55556
Q ss_pred HhcCCc-------hHHHHHHHHHHh
Q 007517 441 ASQGRF-------HDVAELRKNMRK 458 (600)
Q Consensus 441 ~~~g~~-------~~a~~~~~~m~~ 458 (600)
...|+. ++|.+++++...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 778888 788888877654
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.41 E-value=0.076 Score=32.07 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888899999999888888886
No 248
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.41 E-value=0.5 Score=48.44 Aligned_cols=133 Identities=17% Similarity=0.173 Sum_probs=84.0
Q ss_pred HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH
Q 007517 302 GYAQYGLGEKSLKVFHEMF-SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 380 (600)
.....|+++++.++.+.-. -..+ | ..-...++.-+.+.|..+.|.++...-. .-.++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 3445677777766664111 1111 2 3335667777778888888877643222 234566788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 381 EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 381 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+.|.++.++. ++...|..|......+|+++.|+..+++. .-+..|+-.|...|+.+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888887765 37778999999988999999998888876 457778888888888877777766666554
No 249
>PRK09687 putative lyase; Provisional
Probab=94.24 E-value=5.4 Score=38.29 Aligned_cols=236 Identities=12% Similarity=0.031 Sum_probs=145.9
Q ss_pred HHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHhhC--CCCCccc
Q 007517 28 LFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRV----DEGREIFDEM--PKKNVIS 101 (600)
Q Consensus 28 ~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~ 101 (600)
++..+..+|..+....+.++...|..+-...+..-...+|...-..-+.++++.|+. +++...+..+ .+++...
T Consensus 28 L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 28 LFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 344445677777777788888887654444444444466777777777888888763 4577777665 3466555
Q ss_pred HHHHHHHHHhCCC-----hHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNR-----IDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~-----~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 175 (600)
-...+.++...+. ...+...+..... ++..+-...+.++++.++.+....+...+..++..+....+.++++.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 5556666655542 1234555544443 666676777788888777544444444444677777777777777653
Q ss_pred C-HHHHHH-HHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHH
Q 007517 176 E-VQKARV-VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQL 253 (600)
Q Consensus 176 ~-~~~A~~-~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 253 (600)
. ...+.. +...+.++|...-...+.++.+.|+ ..|+..+-+..+.+. ....++.++...|+. .+...+..+
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 1 334444 4444456677777788888888887 456666666655432 234677777888875 566777666
Q ss_pred HHcCCCCchhhHHHHHHHH
Q 007517 254 VRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 254 ~~~~~~~~~~~~~~li~~y 272 (600)
.+.. +|..+-...+.++
T Consensus 261 ~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HhhC--CChhHHHHHHHHH
Confidence 6543 3666655555544
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.23 E-value=0.12 Score=31.03 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 397 IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888864
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.85 E-value=2 Score=35.91 Aligned_cols=89 Identities=13% Similarity=0.198 Sum_probs=45.3
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH------
Q 007517 340 YTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGACRT------ 408 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~------ 408 (600)
+.|++++|.+.|+.+..++...| .....-.|+.+|.+.|++++|...+++. |-.|++ -|...+.++..
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~~~~ 100 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQDEG 100 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHHhhh
Confidence 44566666666666655543222 1334445556666666666666655544 323321 11112222111
Q ss_pred -----------cCCHHHHHHHHHHHhccCCCC
Q 007517 409 -----------HMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 409 -----------~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+....|...|+++++.-|++
T Consensus 101 ~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 101 SLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 122556777777777777876
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.59 Score=44.44 Aligned_cols=159 Identities=11% Similarity=0.038 Sum_probs=116.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH----HHHHhhcCCH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM----VDLLGRAGQV 380 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~ 380 (600)
-+|+..+|-..++++.+. .+.|-..+.-.=.+|...|+.+.-...++++..+ ..|+...|..+ ...+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 368888888889998875 5666777777788999999999999888888764 35666555443 4455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 381 EDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK----NAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
++|++.-++. .+.| |...-.++...+...|+..++.++.++-...=.. -...|-..+-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5444 5556677777788899999999887766543111 12345667777888899999999998
Q ss_pred HHHhCCCccCCc
Q 007517 455 NMRKRNVIKPPG 466 (600)
Q Consensus 455 ~m~~~g~~~~~~ 466 (600)
.=.-+...++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 755444444444
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.65 E-value=1.7 Score=41.87 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=53.2
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCC--CC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-----HHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLV--EP--KTEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPDA-----IIW 399 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~-----~~~ 399 (600)
.|....+.++++.+.|+...+--.- .| ...+|..|...|.+..++++|.-+..+. ++..=. .+.
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~l 209 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSL 209 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHH
Confidence 3444444555555555554331100 11 1344555666666666665554433322 211101 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc--CCCC----CchHHHHHHHHHhcCCchHHHHHHH
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQL--EPKN----AGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
..|.-+++..|....|.+.-+++.++ ...| ......++++|-..|+.+.|..-++
T Consensus 210 yhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 210 YHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 22334555566666666655555542 1111 2223345666666666655554443
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.48 E-value=13 Score=41.93 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=50.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchh--HhhHHHHHhhhcchHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS--LISVLSVCASLASLDHG 246 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a 246 (600)
-+|.++|+.++|. .+|...|++.+|+.+-.+|... -|... --.+.+-+...++.-+|
T Consensus 960 l~Ye~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKAL------------------KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHH------------------HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 3555666666664 4455567777777777665321 11111 12344445555555555
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKD 292 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 292 (600)
-++....... ..-.+..|++...+++|.++-......|
T Consensus 1019 a~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1019 AKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 5554443321 1234556667777777777665555433
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.48 E-value=6.8 Score=39.89 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=11.3
Q ss_pred HHHHHHHHHhccCCCCC
Q 007517 414 LAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~ 430 (600)
.|.+...++.+.+|.-|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 35667777777777543
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.35 E-value=6.3 Score=36.09 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFS--SGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
.|+--...|.++|.++-|-..+++.-+ .++.|+.. .|..-+......++...| ...|...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHh
Confidence 445556677777777766666655432 12444432 122222222222222222 3345556
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCCCCCchHHHHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAMP-------FEPDA-IIWGSLLGACRTHMKLDLAEVAAKKLLQ----LEPKNAGPYILLSN 438 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~ 438 (600)
...|.|..++++|-..|.+-+ --|+. ..+-+.|-.+.-..|+..|++.++.--+ ..|++..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 667788888888777666541 11222 2244445555666788899998888665 35666677777877
Q ss_pred HHHhcCCchHHHHHHH
Q 007517 439 IYASQGRFHDVAELRK 454 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~ 454 (600)
+| ..|+.+++..+..
T Consensus 237 ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS 251 (308)
T ss_pred Hh-ccCCHHHHHHHHc
Confidence 77 5677777765543
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=1.6 Score=41.18 Aligned_cols=29 Identities=3% Similarity=0.003 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
...--.+...+...|+.++|++.+-.+.+
T Consensus 236 ~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 236 VEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334445555555555555554444443
No 258
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.30 E-value=5 Score=39.80 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=16.9
Q ss_pred cCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
.|+.++|++++..+....-.++..||..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 55666666666664444444555555544443
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.24 E-value=4.5 Score=34.07 Aligned_cols=126 Identities=10% Similarity=0.020 Sum_probs=76.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
-..++..+...+.....+.+++.+...+ ..+....+.++..+++.. .+...+.+.. . ++.......+..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 3456777777778888888888888776 355566777777777543 3444444442 1 12222334667777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH-MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
+.+.++++.-++.+++.. ...+..+..+ ++++.|.+++.+ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888877522 1222233334 778888887775 234456666665554
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=2.7 Score=40.19 Aligned_cols=179 Identities=9% Similarity=0.032 Sum_probs=118.1
Q ss_pred HHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHhccCCHH
Q 007517 273 IKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGV----LSACSYTGKVK 345 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l----l~a~~~~g~~~ 345 (600)
...|+.-+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346777788777877765 48899999999999999999999999998764 34555333322 22345678999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD-------AIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
+|++.-++..+-. +.|.-.-.++...+...|++.++.++..+-.-.-+ .--|.. .-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999888876532 34566667788889999999999999987621100 111222 2234556899999999
Q ss_pred HHHHh--ccCCCCCch---HHHHHHHHHhcCCchHHHHHHHH
Q 007517 419 AKKLL--QLEPKNAGP---YILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 419 ~~~~~--~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
|++-+ +++.++... |.-+-..-.....|.+-.++-+.
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~ 311 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADS 311 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhh
Confidence 98633 466666533 23334444444445444444333
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.11 E-value=2.6 Score=43.29 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=67.0
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.+...++|+++.|.++-+... +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.
T Consensus 325 FeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 325 FELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred hHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 345567888888888776665 566888888888888888888888877532 344555566667776666
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP 391 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (600)
++.+..... | -++.....+.-.|+.++..+++.+.+
T Consensus 394 kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 394 KLAKIAEER-G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHHc-c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 666555443 2 13444455555677777777776654
No 262
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.85 E-value=17 Score=39.59 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH
Q 007517 306 YGLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED 382 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 382 (600)
..+.+.|..++.+..... ..++.. ....+.......+..+++...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577888887764432 333322 2222322222222255666666654332 1234444444555557788888
Q ss_pred HHHHHHhCCCC-CCHHHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 383 AMKLIEAMPFE-PDAIIWG-SLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 383 A~~~~~~m~~~-p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+...+..|+.. .+..-|. =+..+....|+.+.|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888877311 1111122 234555567888888888877643
No 263
>PRK09687 putative lyase; Provisional
Probab=92.80 E-value=9.5 Score=36.62 Aligned_cols=119 Identities=12% Similarity=-0.009 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG-KVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
...+.++.+.|+ .+|+..+-.+.+ .+|...-...+.++.+.+ .-+.+...+..+.. .++..+-..-+.+++
T Consensus 146 ~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg 217 (280)
T PRK09687 146 FAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHH
Confidence 334444444443 344444444443 233333333333444332 12234444433332 234455555555555
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
+.|+..-.-.+++.+. .++ .....+.++...|+. +|...+.++.+.+|
T Consensus 218 ~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 218 LRKDKRVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred ccCChhHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 5555332222333332 122 123444555555553 45555555555555
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=4.3 Score=37.11 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCH
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEV 177 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 177 (600)
|.--..+|-...++++|...+.+..+ .+..++-....+ ++.|.-+.+++. +.-+..++.-..+|..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKa------yEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKA------YEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 33344456666666666666555543 222222111111 222222222222 11122334455667777776
Q ss_pred HHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 178 QKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 178 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
+.|-..+++..+ ...+.++++|+.+|++..
T Consensus 108 dtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 108 DTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred chHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 666555554321 234456666666666543
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=18 Score=39.39 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=46.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcCC
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~ 445 (600)
++..+.+..+++.+..+.+..+ +-++..|-.+++.+...+..+.-.+...+.++ +...+..+-..+++++++.+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g-~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG-KEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC-ccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 3445566667777777777775 33777888888888888777666665555554 222222333455566666554
No 266
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.65 E-value=0.88 Score=36.99 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=52.6
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcC
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD--AIIWGSLLGACRTHM 410 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g 410 (600)
+.+..|+++.|.+.|.+...- .+.....||.-..+|.-.|+.++|++-+++. +-+.- -..|..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 345566777777777666542 2345666777777777777777777666654 21100 112333334466777
Q ss_pred CHHHHHHHHHHHhccCCC
Q 007517 411 KLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~ 428 (600)
+.+.|..-|+.+-++...
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777766665443
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.64 E-value=1.2 Score=41.45 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhHhcCCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCHHHH
Q 007517 342 GKVKEGREIFESMKSKYLV-EPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD-AIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a 415 (600)
|++..|.+.|....++|.- .-....+-.|...+...|++++|..+|..+ |-.|- +...--|.......|+.++|
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A 234 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEA 234 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHH
Confidence 4444555444444443310 001223333445555555555555544444 21121 23333444444555555555
Q ss_pred HHHHHHHhccCCCC
Q 007517 416 EVAAKKLLQLEPKN 429 (600)
Q Consensus 416 ~~~~~~~~~~~p~~ 429 (600)
...++++.+.-|+.
T Consensus 235 ~atl~qv~k~YP~t 248 (262)
T COG1729 235 CATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHCCCC
Confidence 55555555555544
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.55 E-value=8.5 Score=35.69 Aligned_cols=167 Identities=13% Similarity=0.135 Sum_probs=80.9
Q ss_pred HhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-----
Q 007517 172 GQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL----- 240 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~----- 240 (600)
.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++..+.-..-...-|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 4567777777777777643 22334455667777888888888887776643222223344334333311
Q ss_pred --cchHHHHH---HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHH-HH-HHHHHHHhcCChHHHH
Q 007517 241 --ASLDHGRQ---VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVM-WN-SIISGYAQYGLGEKSL 313 (600)
Q Consensus 241 --~~~~~a~~---~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~-~li~~~~~~g~~~~A~ 313 (600)
.+...+++ -++.+++. .|.+..+-.+ ......+ +|... ++ ++..-|.+.|.+..|.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya~dA--------------~~~i~~~--~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR-YPNSRYAPDA--------------KARIVKL--NDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH-CCCCcchhhH--------------HHHHHHH--HHHHHHHHHHHHHHHHHhcChHHHH
Confidence 12222222 22222222 1111111110 0000000 01111 11 2334567777777777
Q ss_pred HHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 314 KVFHEMFSSGVMPDD---VTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+..
T Consensus 188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777765 22222 2344455667777777777666555544
No 269
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.46 E-value=7.2 Score=35.05 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
...||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++--.|++..|.+-|...-..-.-.|-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456777777777788888888888877764 332 12222212234445777777665554433212222223332222
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHhc
Q 007517 372 DLLGRAGQVEDAMKLI-EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-------AGPYILLSNIYASQ 443 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 443 (600)
.+.-++.+|..-+ ++.. .-|..-|..-+-.+.-..-.+ +.+++++.+...++ ..+|.-|+.-|...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2334566665443 3332 345566666555543322111 22333333322222 35788899999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007517 444 GRFHDVAELRKNMRKRN 460 (600)
Q Consensus 444 g~~~~a~~~~~~m~~~g 460 (600)
|..++|..+|+.....+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999876654
No 270
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.43 E-value=0.95 Score=42.04 Aligned_cols=97 Identities=12% Similarity=0.170 Sum_probs=72.1
Q ss_pred HHHHHhcc--cCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh-------------
Q 007517 181 RVVFDQMR--EKDDATWSGMIKVYERK-----GYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL------------- 240 (600)
Q Consensus 181 ~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 240 (600)
++.|.... ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..+|+.+-+-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 45566665 56777888887777543 55666667788889999999999999998876442
Q ss_pred ---cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC
Q 007517 241 ---ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE 277 (600)
Q Consensus 241 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 277 (600)
..-+.+..++++|...|+-||..+-..|++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 2234577888888888888888888888888877664
No 271
>PRK15331 chaperone protein SicA; Provisional
Probab=92.16 E-value=3.2 Score=35.64 Aligned_cols=84 Identities=8% Similarity=0.061 Sum_probs=34.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
-+.|++++|..+|+-+...+ .-|..-+..|..+|-..+.+++|...|.....- . ..|+..+-.....|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34455555555555444321 111222233333334444555555554433221 1 12222233344444555555555
Q ss_pred HHHHHhC
Q 007517 384 MKLIEAM 390 (600)
Q Consensus 384 ~~~~~~m 390 (600)
+.-|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544443
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.09 E-value=10 Score=35.23 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAG---PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+..-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|..++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 345688999999999999999987665444 456688889999999999988776654
No 273
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.00 E-value=18 Score=37.83 Aligned_cols=365 Identities=12% Similarity=0.077 Sum_probs=196.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHhhCCCCCcc---hHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHH-
Q 007517 7 VSWTAMVRGYVEEGMITEAGTLFWQMPEKNVV---SWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYC- 79 (600)
Q Consensus 7 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~- 79 (600)
..|+++|.---+....+.+..++..++..-+. -|-....-=.+.|..+.+.++|++-. ...+..|...+....
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45777776655556666677777777743333 23444444457788999999998876 335555665554443
Q ss_pred hcCChHHHHHHHhhCCC------CCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHH---hcC------
Q 007517 80 QDGRVDEGREIFDEMPK------KNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGY---TQC------ 143 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~---~~~------ 143 (600)
..|+.+..++.|+.... .+..-|...|.--..++++.....++++..+ |.. -|+....-+ .+.
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~-~~~~~f~~f~~~l~~~~~~~l 204 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLH-QLNRHFDRFKQLLNQNEEKIL 204 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhh-HhHHHHHHHHHHHhcCChhhh
Confidence 45777788888887654 3455688888877788888888888888877 321 111111111 111
Q ss_pred CChHHHHHHH-----------------------hhCCCCCcc---chhHH-------HHHHHhcCCHHHHHHHHHhccc-
Q 007517 144 GRIQDAWELF-----------------------KAMPMKSVV---ASNSM-------ILGLGQNGEVQKARVVFDQMRE- 189 (600)
Q Consensus 144 g~~~~a~~~~-----------------------~~~~~~~~~---~~~~l-------i~~~~~~g~~~~A~~~f~~~~~- 189 (600)
...++..++- .....+... ..+.+ -.+|-..-...+.+..|+.-..
T Consensus 205 ~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikr 284 (577)
T KOG1258|consen 205 LSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKR 284 (577)
T ss_pred cCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccc
Confidence 1111111111 111000000 00000 1122222233333334443321
Q ss_pred ------C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 007517 190 ------K----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 190 ------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 259 (600)
+ +..+|+.-+.--...|+.+.+.-+|++..----.-+ ..|...+.-....|+.+.+..++....+.-.+
T Consensus 285 pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k 363 (577)
T KOG1258|consen 285 PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLANNVLARACKIHVK 363 (577)
T ss_pred cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC
Confidence 1 456788888888899999999888887643110111 12222333333348888887777666664433
Q ss_pred --CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHH-HHHHHHHHHHhcCChHHHH---HHHHHHHHCCCCCCHHHH
Q 007517 260 --VDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIV-MWNSIISGYAQYGLGEKSL---KVFHEMFSSGVMPDDVTL 331 (600)
Q Consensus 260 --~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~~t~ 331 (600)
|...+..+.+. -..|+.+.|..+++.+.+ |+.+ .-.-=+..-.+.|+.+.+. +++..... | +-+..++
T Consensus 364 ~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~ 439 (577)
T KOG1258|consen 364 KTPIIHLLEARFE--ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGIL 439 (577)
T ss_pred CCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchh
Confidence 33333333322 225789999988888765 3321 1111123344566666666 33332222 2 1111111
Q ss_pred HHHHH-----HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 332 VGVLS-----ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 332 ~~ll~-----a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
..+.- -+.-.++.+.|..++..+... ++++...|..+++.....+.
T Consensus 440 ~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCc
Confidence 11111 123357888999999888763 56778888888887766553
No 274
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.70 E-value=1.1 Score=39.48 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=69.4
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP------DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
.-+.+.|++++|..-|... .+-| -.+.|..-..+..+.+..+.|+.-..+++++.|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3456778888888777655 1122 23445555667888899999999999999999988788888899999999
Q ss_pred CchHHHHHHHHHHhC
Q 007517 445 RFHDVAELRKNMRKR 459 (600)
Q Consensus 445 ~~~~a~~~~~~m~~~ 459 (600)
++++|.+=++++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999998875
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.55 E-value=13 Score=35.32 Aligned_cols=141 Identities=11% Similarity=0.091 Sum_probs=63.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
.....|++.+|..+|....... .-+...-..+..++...|+.+.|..++..+..+.. .........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcCC
Confidence 3445566666666666655532 11223334455556666666666666665543210 000111122234444444433
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHHHHHHHHhcC
Q 007517 382 DAMKLIEAMPFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 382 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g 444 (600)
+...+-.+..-.| |...-..|...+...|+.+.|...+-.+++. .-++...-..|+..+..-|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333332233 3444444555555556666655544444432 2223344444555554444
No 276
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=15 Score=35.35 Aligned_cols=19 Identities=16% Similarity=-0.155 Sum_probs=13.1
Q ss_pred HHHHcCCHHHHHHHHHHHh
Q 007517 405 ACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~ 423 (600)
.+.+.++++.|...++-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556778888888777543
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.06 E-value=0.37 Score=28.89 Aligned_cols=31 Identities=19% Similarity=0.087 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777778888888888888888887774
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.75 E-value=19 Score=35.84 Aligned_cols=149 Identities=11% Similarity=-0.028 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhc-CCCCCChHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP---DDVTLVGVLSACSYTGKVKEGREIFESMKSK-YLVEPKTEH 366 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~p~~~~ 366 (600)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+-.+|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 355678888888888999999998888887643211 2222323344455667888888887776652 110001111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKL-IEAMPFEPDAIIWGSLLGACRT------HMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...+..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222223 3778888899999999999876666666665
Q ss_pred HH
Q 007517 440 YA 441 (600)
Q Consensus 440 ~~ 441 (600)
+.
T Consensus 302 ~~ 303 (352)
T PF02259_consen 302 ND 303 (352)
T ss_pred HH
Confidence 53
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=12 Score=40.58 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=23.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
|.-|....+..+-..+++.+.+.|+.-... -..||.+|.+.++.+.-.++.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHh
Confidence 333444444444444555555554322222 1234555555555555444443
No 280
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=90.36 E-value=38 Score=38.78 Aligned_cols=252 Identities=10% Similarity=-0.016 Sum_probs=128.7
Q ss_pred HHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCCh-HHHHHHHhhCCCCCccchhH
Q 007517 89 EIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRI-QDAWELFKAMPMKSVVASNS 166 (600)
Q Consensus 89 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ 166 (600)
.+.+.+..+|...--..+..+.+.+..+ +...+..... +|...-...+.++...+.. .....+...+..+|..+..+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 3334444555555555555555555433 3333333333 5444444444444333221 11111222222455555555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH-
Q 007517 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH- 245 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~- 245 (600)
.+..+...+.- ....+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++...+..+.
T Consensus 704 A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~~~~~~~ 775 (897)
T PRK13800 704 ALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATLGAGGAP 775 (897)
T ss_pred HHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHhccccch
Confidence 56655544321 122344555556665555556666555443221 1121 13344444445555555554332
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH-hhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK-LIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
+...+..+.+ .+|..+-.+.+..+.+.|..+.+. .+...+..+|...-...+.++...+. +++...+..+.+
T Consensus 776 ~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--- 848 (897)
T PRK13800 776 AGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--- 848 (897)
T ss_pred hHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---
Confidence 2233333332 456777777888888888765442 34444555666666666777777665 466677666664
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|+...=...+.++...+.-..+...+....+
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666667777765444566666666655
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.30 E-value=2 Score=40.60 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMPDDVTLVG 333 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 333 (600)
..++..++..+..+|+.+.+.+.++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667788889999999999988888765 3678899999999999999999999988865 467777666554
Q ss_pred HHHH
Q 007517 334 VLSA 337 (600)
Q Consensus 334 ll~a 337 (600)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.22 E-value=19 Score=34.92 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhh--h----cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCAS--L----ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
.+.+.+++.|.+.|.+-+..+|.+....... . .....+..+|+.|++.-.-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4556777888888888887777665444333 1 124456666666666431000
Q ss_pred hhhhhcCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHh
Q 007517 283 LIFDNFASKDIVMWNSIISGYAQYGL----GEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGK--VKEGREIFESM 354 (600)
Q Consensus 283 ~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~~ 354 (600)
.++-.++.+|+.. ..++ .+.+..+|+.+.+.|+..+.. ....+|..+..... ...+.++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 0122223333222 1111 246667777777777665443 33333333322222 34667777777
Q ss_pred HhcCCCCCChHHHHHHHHH
Q 007517 355 KSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~ 373 (600)
.+. ++++...+|..+.-+
T Consensus 209 ~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHc-CCccccccccHHHHH
Confidence 765 778777777655433
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.51 E-value=11 Score=31.10 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..+..+......|+-++-.+++.++.+. -.|++.....+..||.+.|+..++.+++.+..++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3444566677777777777777777652 3666777777777888888888888887777765
No 284
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.45 E-value=27 Score=35.70 Aligned_cols=103 Identities=14% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHH
Q 007517 324 VMPDDVTLV-GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL---GRAGQVEDAMKLIEAM--PFEPDAI 397 (600)
Q Consensus 324 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 397 (600)
..|+..|+. .++.-+-..|-...|+..+..+..- -+|+...|.-+|+.= ..+| +..+.+.++.| .+..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 467777654 4566677788888888888888763 356777888777653 3344 77778888877 3336888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKN 429 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 429 (600)
.|...+.--..+|..+.+-.++.++.+ ++|..
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 888888887888888888888777665 56654
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.33 E-value=15 Score=35.87 Aligned_cols=126 Identities=14% Similarity=0.039 Sum_probs=68.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHh---HhcCCCCCChHHHHH-
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMP-----DDVTLVGVLSACSYTGKVKEGREIFESM---KSKYLVEPKTEHYAC- 369 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~- 369 (600)
|..++...+.++++++.|+...+..-.. .-..+..+-+.+.+..++++|.-+..+. ...+++..-..-|.+
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566677777776654421111 1134556666666666666665544332 222333222222322
Q ss_pred ----HHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 370 ----MVDLLGRAGQVEDAMKLIEAM-------PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 370 ----li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
|.-+|...|++.+|.+..++. +-+| .......+.+.|+..|+.+.|..-++.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 233455666666666655543 3222 234456667778888888888887777665
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.30 E-value=13 Score=31.86 Aligned_cols=90 Identities=17% Similarity=0.178 Sum_probs=55.9
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 413 (600)
..-...++.+.+..++..+.- +.|. +..-..-...+.+.|++++|..+|+++ .-.|....-..|+..|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334566788888888887765 3444 333344455677888999999999888 32455555566666666554433
Q ss_pred HHHHHHHHHhccCCC
Q 007517 414 LAEVAAKKLLQLEPK 428 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~ 428 (600)
.=....+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 344455556665553
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.27 E-value=0.9 Score=27.79 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46667777777777777777777743
No 288
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.23 E-value=0.97 Score=29.15 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
.+..+...|.+.|++++|.++|++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666666666666666666665
No 289
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.14 E-value=66 Score=39.73 Aligned_cols=308 Identities=12% Similarity=0.040 Sum_probs=165.1
Q ss_pred HHHHHhcCCChHHHHHHHhhCC--C----CCccchhHHHHHHHhcCCHHHHHHHHHh-cccCChhhHHHHHHHHHHcCCh
Q 007517 136 MLMGYTQCGRIQDAWELFKAMP--M----KSVVASNSMILGLGQNGEVQKARVVFDQ-MREKDDATWSGMIKVYERKGYE 208 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~~~~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~ 208 (600)
+..+-.+++.+..|...++.-. + .....+..+...|+.-+++|....+... ..++ +...-|.-....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 3344556677777777777632 1 1112233444577777777776666552 2222 223345556778889
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHcCCHHHHHhhhhh
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVY-VASVLITMYIKCGELVKGKLIFDN 287 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~ 287 (600)
..|...|+.+.+.+ ++...+++.++..-...+.++...-..+...... ++... .++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 89999999887753 3336677777776666676666655444333322 22222 23333444467777777666655
Q ss_pred cCCCCHHHHHHH-H-HHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH----------H
Q 007517 288 FASKDIVMWNSI-I-SGYAQYG--LGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE----------S 353 (600)
Q Consensus 288 ~~~~~~~~~~~l-i-~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~----------~ 353 (600)
..+..+|.+. + ....+.. +.-.-.++.+.+++.-+. =+.+|+..|.+..+.++.- .
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4555666654 2 2222211 111111233333322111 1223333332222222111 1
Q ss_pred hHhcCCCCCCh------HHHHHHH---HHHhhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 354 MKSKYLVEPKT------EHYACMV---DLLGRAGQVEDAMK-LIEAMPFEP-----DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 354 ~~~~~~~~p~~------~~~~~li---~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.....++.++. .-|..-+ +-+.+...+--|.+ .+.....+| -..+|-.....++..|.++.|...
T Consensus 1613 ~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1613 IEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred HHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11111222321 1222222 22222111111111 111111122 256799999999999999999998
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.-++.+..+ +..+...+......|+...|..+++.-.+...
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888887774 36889999999999999999999998886554
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.08 E-value=0.65 Score=28.42 Aligned_cols=25 Identities=16% Similarity=0.007 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~ 423 (600)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555555555555555555533
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.07 E-value=2 Score=40.64 Aligned_cols=61 Identities=20% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++..++..+...|+.+.+...++++++.+|-+-..|..+..+|...|+...|...++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566666667777777777777776666677777777777777777777766654
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.83 E-value=1.6 Score=37.22 Aligned_cols=38 Identities=18% Similarity=0.011 Sum_probs=17.6
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++.+|.++++.+.+-.|..+..-..++.++...|
T Consensus 55 i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 34455555555555554444444333333444443333
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.78 E-value=10 Score=33.47 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC------hHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK------TEH 366 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~ 366 (600)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+...-..-..+ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 44555556666666666666666666554444443 3445555566666666666665554432110011 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|..|.. ...|++.+|-+.|-..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHcc
Confidence 222222 3356777777776655
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.62 E-value=6.1 Score=34.11 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=27.6
Q ss_pred HcCCHHHHHhhhhhcCCC-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 274 KCGELVKGKLIFDNFASK-D---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
..|.+++.....+.+..+ + ...-.+|.-+-.+.|++.+|..+|.++......|.
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 345555555555444332 1 12334444455566666777777766655433443
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.39 E-value=42 Score=36.52 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc---CCCCC-chH-----HHHHHHHHhcCCchHHHHHHHHHH
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQL---EPKNA-GPY-----ILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~-~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
++++.-.-.|+..+..........+ .|+.. ..+ ..+...|...|+.++|.+...+..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3444433367777666555554442 23221 222 235556778899999888877654
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.24 E-value=1.8 Score=36.28 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=36.8
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 35667777777777777777776666666777777777777777777666544
No 297
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=87.85 E-value=34 Score=34.86 Aligned_cols=194 Identities=8% Similarity=-0.014 Sum_probs=95.0
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhH
Q 007517 87 GREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNS 166 (600)
Q Consensus 87 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (600)
...+.+.+..++.......++++...+.....-.+......++.......+.++...+. +-...+...+...+..+...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHH
Confidence 44444445455555566666666666655444443333333555555455555554331 22222333333555666666
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 167 MILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
-+..++..++.+..-.+-.-....|...-..-+.+....|. .+|...+..+.. .|+......+.......|. +.+
T Consensus 167 A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a 241 (410)
T TIGR02270 167 ALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDA 241 (410)
T ss_pred HHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhH
Confidence 66666666654433333333444566555556666666666 555555444322 2222222222222222222 233
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK 291 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 291 (600)
...+..+.+. + .+-...+.+..+.|+...+.-+.+.|..+
T Consensus 242 ~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~~l~d~ 281 (410)
T TIGR02270 242 QAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLEAMREP 281 (410)
T ss_pred HHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHHHhcCc
Confidence 3333333332 1 25556666777777777666666666543
No 298
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=17 Score=33.15 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=32.9
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHhccCCCC
Q 007517 369 CMVDLLGRA-GQVEDAMKLIEAM-----PFEPDAIIWGSLLGA---CRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 369 ~li~~~~~~-g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+.+.|... .++++|...++.. +-+.+...-..++.+ -...+++.+|..+|++......++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444443 4555555555554 112222223333332 345678899999999887754444
No 299
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.39 E-value=27 Score=34.66 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 394 PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP----KNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
....+|..+...+++.|.++.|...+.++....+ ..|.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4566899999999999999999999999988652 2456677788999999999999999888877333
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.38 E-value=17 Score=33.86 Aligned_cols=139 Identities=12% Similarity=0.099 Sum_probs=82.0
Q ss_pred CChHHHHHHHhhCCC----CC---cccHHHHHHHHHhCCChHHHHHHHhhcCC---------CCcchHHHHHHHHhcCCC
Q 007517 82 GRVDEGREIFDEMPK----KN---VISWTTMISGYVNNNRIDVARKLFEVMPE---------KNEVSWTAMLMGYTQCGR 145 (600)
Q Consensus 82 g~~~~A~~~~~~m~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------p~~~t~~~ll~~~~~~g~ 145 (600)
..+++|..-|++..+ +. -.+.-.+|..+.+.|++++.++.+.+|.. -+..+.+++++-.....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666655432 11 12344567777777888777777777754 233456667766666666
Q ss_pred hHHHHHHHhhCC-----CCCccc----hhHHHHHHHhcCCHHHHHHHHHhcccC---------------ChhhHHHHHHH
Q 007517 146 IQDAWELFKAMP-----MKSVVA----SNSMILGLGQNGEVQKARVVFDQMREK---------------DDATWSGMIKV 201 (600)
Q Consensus 146 ~~~a~~~~~~~~-----~~~~~~----~~~li~~~~~~g~~~~A~~~f~~~~~~---------------~~~~~~~li~~ 201 (600)
.+.-..+++.-. ..+... -..|...|...|.+.+-.+++.++... -...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555555554433 223332 345677777777777777777666421 13456666777
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 007517 202 YERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~ 220 (600)
|....+-.+-..+|++...
T Consensus 201 YT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hhhhcccHHHHHHHHHHHH
Confidence 7777666666666766543
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.99 E-value=0.023 Score=48.49 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=29.1
Q ss_pred hHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 232 SVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 232 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
.++..+.+.+.......+++.+.+.+...+....+.++..|++.++.+...++++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 4455555556666666666666655444445555555555555544444444444
No 302
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.99 E-value=3.8 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGY 509 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 509 (600)
...++-++.+.|++++|.++.+.+.+. .|...+.......+.+.|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~---------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI---------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH---------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh---------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456788899999999999999998763 56666666666777788887774
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.82 E-value=5.5 Score=40.04 Aligned_cols=85 Identities=13% Similarity=0.041 Sum_probs=43.1
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 374 LGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
....|.++.+.+.+... -+.....+...++......|+.+.|....+.++.-+-+++......+..--..|.++++.-
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHH
Confidence 44555666665555544 1222344455555555555666666666666665444443333332333334455566666
Q ss_pred HHHHHHh
Q 007517 452 LRKNMRK 458 (600)
Q Consensus 452 ~~~~m~~ 458 (600)
.+++...
T Consensus 413 ~wk~~~~ 419 (831)
T PRK15180 413 YWKRVLL 419 (831)
T ss_pred HHHHHhc
Confidence 6665544
No 304
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.77 E-value=21 Score=38.78 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHhhcCC---CCcchHHHHHHHHhcC
Q 007517 100 ISWTTMISGYVNNNRIDVARKLFEVMPE---KNEVSWTAMLMGYTQC 143 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---p~~~t~~~ll~~~~~~ 143 (600)
..|. +|--+.++|++++|.++...... .....|...+..+...
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3443 44456677777777777644443 3345556666666543
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.02 E-value=22 Score=30.87 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
.|..+|..+.+.|++. .+.++...++-||+......+-... +....+.++--.|.++.+ ..+..+++.+
T Consensus 31 L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~~~~~iievL 99 (167)
T PF07035_consen 31 LYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----TAYEEIIEVL 99 (167)
T ss_pred HHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----hhHHHHHHHH
Confidence 3334444444444432 3344555566666665554443322 233344444444443211 1355566777
Q ss_pred hhcCCHHHHHHHHHhC
Q 007517 375 GRAGQVEDAMKLIEAM 390 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m 390 (600)
...|++-+|.++.++.
T Consensus 100 L~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 100 LSKGQVLEALRYARQY 115 (167)
T ss_pred HhCCCHHHHHHHHHHc
Confidence 7777777777777664
No 306
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.80 E-value=2 Score=25.59 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3577777777888888888888887765
No 307
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.66 E-value=23 Score=30.76 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHh
Q 007517 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG--QVEDAMKLIEA 389 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~ 389 (600)
-+++.+.+.+.|+.|+...+..++..+.+.|....-.++++. ++-+|.....+.+-.++... -.+-|.+.+.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 356677778889999999999999999999998887776652 44455544444443333221 13445555555
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 390 MPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 390 m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
++. .+..++..+...|++-+|.++.++....+.- ....+..+-.+.++...-..+++-..+++
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 541 2344556777899999999998876443322 22344555555566555556666655544
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.48 E-value=8.7 Score=33.54 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
+++|...|+++...+|++ ..|..-+.+. ++|-+++.++.+.+..
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 567888888888899998 6666655554 4678888888777654
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.73 E-value=80 Score=36.16 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=48.0
Q ss_pred HHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 273 IKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
-+.|.+.+|..++.--.++--..|.+-..-+.+.+.+++|--+|+..-+ .--.+.++...|+++++..+..
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHH
Confidence 3444455555444332222223333333333444555555555443311 1123445555566666666655
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 990 ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 990 QLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred hhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4432 10011122244555555666666666665555
No 310
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.66 E-value=3.4 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.-++.+.|+++.|.+..+.+++.+|++.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 455678899999999999999999999984
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.60 E-value=13 Score=32.85 Aligned_cols=95 Identities=19% Similarity=0.075 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CCHHHHHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFASK------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM---PDDVTLVG 333 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ 333 (600)
..+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+....--. ++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667889999999999999999988764 2346677888888899999988888776543222 22222111
Q ss_pred HHH--HHhccCCHHHHHHHHHHhHhc
Q 007517 334 VLS--ACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 334 ll~--a~~~~g~~~~a~~~~~~~~~~ 357 (600)
+.. ++...+++..|-+.|-.....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 211 234567888888888766543
No 312
>PRK10941 hypothetical protein; Provisional
Probab=83.94 E-value=8.4 Score=36.58 Aligned_cols=62 Identities=21% Similarity=0.170 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+.|-.+|.+.++++.|+++.+.++.+.|++|.-+.--+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 35667788999999999999999999999999888888999999999999999988877654
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.67 E-value=2.6 Score=26.37 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+++.|...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444455555555555555544443
No 314
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.64 E-value=23 Score=37.08 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=103.0
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
-.|+++.|..++-.++++ .-+.++.-+-..|..++|+++ .||.. -|.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457888887777766632 334455666677777777654 33332 2322 236789999988765
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
+. .+..-|..|.++..+.|++..|.+-|.... -|..|+-.+...|+.+.-..+.....+...+|
T Consensus 662 e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 43 346679999999999999999999988652 35667777778888776666666666666555
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 007517 433 YILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.-..+|...|++++..+++.+-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 2334677889999999887653
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.58 E-value=2 Score=41.15 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=78.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCC
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMK 411 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~ 411 (600)
-.-|.+.|.+++|...+...... .| ++.++..-..+|.+..++..|+.-.+.. .+. .-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34577889999999999887653 45 8888988999999999999888766654 211 112345555555556788
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
.++|..-++..++++|++ ..|-..|+......|+.-+
T Consensus 181 ~~EAKkD~E~vL~LEP~~----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHHhHHHHHhhCccc----HHHHHHHHHhcchHhhhHH
Confidence 999999999999999986 3444555555555555433
No 316
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.48 E-value=11 Score=31.05 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhc-cCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 412 LDLAEVAAKKLLQ-LEPKNA-GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 412 ~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..++..+++.+.+ -.|... .....|+-.+.+.|++++++++.+...+
T Consensus 51 v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 51 VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445555555554 233321 2223344555566666666666555543
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.42 E-value=10 Score=36.12 Aligned_cols=97 Identities=11% Similarity=0.188 Sum_probs=70.7
Q ss_pred CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-C--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 257 QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-K--------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 257 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
|.+....+...++..-....+++++...+-++.. + ..++|--++. .-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 4555556666677666667788888777766543 1 3344443333 3367789999988889999999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 328 DVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 328 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..|++.++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999988887666543
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.69 E-value=78 Score=34.45 Aligned_cols=99 Identities=9% Similarity=0.084 Sum_probs=67.6
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCC-----cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHH
Q 007517 13 VRGYVEEGMITEAGTLFWQMPEKN-----VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEG 87 (600)
Q Consensus 13 l~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 87 (600)
|..+.+.+.+++|+..-+.....- ...+-..+..+...|++++|-.+.-.|...+..-|---+.-++..++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 567788899999999887766321 235777788888899999999988888877777777777777777666554
Q ss_pred HHHHhhCCC-CCcccHHHHHHHHHh
Q 007517 88 REIFDEMPK-KNVISWTTMISGYVN 111 (600)
Q Consensus 88 ~~~~~~m~~-~~~~~~~~li~~~~~ 111 (600)
..++=.-+. -+...|..++-.+..
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH
Confidence 433211111 133456666665554
No 319
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.66 E-value=62 Score=33.33 Aligned_cols=159 Identities=8% Similarity=0.087 Sum_probs=82.4
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIIS 301 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 301 (600)
.|...+.+++..+.......-...+..++...| .+...+-.++..|... ..++-..+++++.+ .|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 355555566666666666666666666665544 3444555566666655 33444445553333 33333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDD------VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
-|-+ ++.+.+..+|.+.... +-|-. ..|.-+... -..+.+.-.++...+.++.|...-...+.-+-.-|.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 3333 5556666666665543 12210 112222211 123455555555566555554444555555666677
Q ss_pred hcCCHHHHHHHHHhC
Q 007517 376 RAGQVEDAMKLIEAM 390 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m 390 (600)
...++++|.+++..+
T Consensus 217 ~~eN~~eai~Ilk~i 231 (711)
T COG1747 217 ENENWTEAIRILKHI 231 (711)
T ss_pred cccCHHHHHHHHHHH
Confidence 777777777777654
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.51 E-value=21 Score=30.21 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQ 219 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~ 219 (600)
.|..........|...++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 34444444445555555555555554
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.49 E-value=1.7 Score=24.20 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=17.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 007517 431 GPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777888888888877654
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.71 E-value=2.2 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
No 323
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.69 E-value=25 Score=27.38 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=46.6
Q ss_pred HHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG 333 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 333 (600)
+..+...|++++|..+.+....||+..|-+|-.. +.|..+++..-+.+|...| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3445678999999999999988999999887553 5677777777777887776 666666644
No 324
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.66 E-value=3.1 Score=25.06 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=12.5
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
|.+..+++.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334455555555555555555543
No 325
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.46 E-value=53 Score=31.85 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY--TG----KVKEGREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 380 (600)
+++.+.+++.|.+.|++-+..+|.+....... .. ....+..+|+.|++++.+-. +-..+..|+.. +.+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999999888887764433322 22 35678999999999875432 33344444332 44444
Q ss_pred HH----HHHHHHhC---CCCC-CHHHHHHHHHHHHHcC-C--HHHHHHHHHHHhcc
Q 007517 381 ED----AMKLIEAM---PFEP-DAIIWGSLLGACRTHM-K--LDLAEVAAKKLLQL 425 (600)
Q Consensus 381 ~~----A~~~~~~m---~~~p-~~~~~~~ll~~~~~~g-~--~~~a~~~~~~~~~~ 425 (600)
++ ++..++.+ ++.. |..-+.+-+-++.... + ..++..+++.+.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 33 33344433 4443 3333333333332222 1 23455566666553
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=80.00 E-value=13 Score=28.59 Aligned_cols=62 Identities=19% Similarity=0.360 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.-++.+-++.+....+.|+.....+.|.||-+..++..|.++|+.++.+-+ .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 345666677777778899999999999999999999999999998876533 34556766654
No 327
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.97 E-value=0.89 Score=38.58 Aligned_cols=124 Identities=15% Similarity=0.293 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
+|..+.+.+..+....+++.+.. .+....+.++..|++.+..++.+++++. .+......++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 45566666777777666666552 4577888889999988887888887772 222444567778888888
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMK 411 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 411 (600)
++++..++.++.... . .++.+...+++++|.+.+.+. ++...|..++..|...++
T Consensus 86 ~~~a~~Ly~~~~~~~----~------al~i~~~~~~~~~a~e~~~~~---~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD----E------ALEILHKLKDYEEAIEYAKKV---DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHT----T------CSSTSSSTHCSCCCTTTGGGC---SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHH----H------HHHHHHHHccHHHHHHHHHhc---CcHHHHHHHHHHHHhcCc
Confidence 888888887764321 1 112245566777777666664 357788888877766554
No 328
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.83 E-value=12 Score=29.22 Aligned_cols=60 Identities=20% Similarity=0.360 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
+..+-++.+....+.|+.....+.|.||-+..++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5556666666777899999999999999999999999999999987654 33337776665
No 329
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.75 E-value=59 Score=31.18 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 295 MWNSIISGYAQYGLG---EKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 295 ~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
+...++.+|...+.. ++|..+++.+... -|+ ...+..-+..+.+.++.+++.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e--~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE--YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 444555555555443 3455555555443 233 223334455555567777777777777664
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.74 E-value=4.8 Score=25.09 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777776543
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.73 E-value=3.1 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=13.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..++.+.|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444555555555555555555554
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.60 E-value=4.2 Score=22.87 Aligned_cols=31 Identities=26% Similarity=0.104 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
.|..+...+...|+++.|...+++.++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3445555666666667777666666666553
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.13 E-value=3.8 Score=22.81 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=14.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~ 388 (600)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445666667777777766654
No 334
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.28 E-value=49 Score=29.45 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHH-----HHHHHhhcCCHHHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVG--VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYAC-----MVDLLGRAGQVEDA 383 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----li~~~~~~g~~~~A 383 (600)
+.....+++....-+....++.. +...+...+++++|...++..... |....+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45555556654321222222222 234567788888888888766542 33333333 44567788999999
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 384 MKLIEAMPFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 384 ~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
+..++... .++ ......-.+.+...|+.++|...|+++++..+++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99988763 222 2223333466888899999999999988877543
No 335
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.20 E-value=7.2 Score=34.04 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC----chHHHHHHHHHH
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR----FHDVAELRKNMR 457 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 457 (600)
+++|..-|++++.++|+...++..++++|...|. ..+|.++|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777788888999999999999999987654 335555555554
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.92 E-value=35 Score=37.03 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=23.8
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhcc---cCChhhHHHHHHHHHHc
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMR---EKDDATWSGMIKVYERK 205 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 205 (600)
.-++|-.+.++|++++|.++..+.. .+....+-..+..|..+
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3456667777777777777773333 22344555566666554
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.47 E-value=11 Score=36.21 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=63.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
..-|.++|.+++|++.|..-.. +.| |.+++..-..||.+...+..|+.-......-. ..-+..|+.-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 3569999999999999998775 467 88999888899999988888877666554310 111333444444444456
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 007517 379 QVEDAMKLIEAM-PFEPDA 396 (600)
Q Consensus 379 ~~~~A~~~~~~m-~~~p~~ 396 (600)
...+|.+-++.. .++|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 666776666655 566763
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.34 E-value=12 Score=33.39 Aligned_cols=74 Identities=19% Similarity=0.229 Sum_probs=46.4
Q ss_pred hhcCCHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CC---CCchHHHHHHHHHhcCCch
Q 007517 375 GRAGQVEDAMKLIEAMPFEP---DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE-PK---NAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~---~~~~~~~l~~~~~~~g~~~ 447 (600)
.+.|+ ++|.+.|-.+.-.| ++..-.. +..|....|.+++..++-+++++. |+ ||..+..|+.+|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 45566555551122 3333333 444455678888888888888753 22 5677888888888888888
Q ss_pred HHH
Q 007517 448 DVA 450 (600)
Q Consensus 448 ~a~ 450 (600)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 774
No 339
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=77.07 E-value=5.2 Score=40.40 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=60.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPDAIIWGS-LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
+.+.+.++.|..++.++ ...||-..|.+ =..++.+.+++..|+.-+.++++++|.....|+.-+.++...+.+.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34555666666666555 45665444333 33667778888888888888888888887888888888888888888888
Q ss_pred HHHHHHh
Q 007517 452 LRKNMRK 458 (600)
Q Consensus 452 ~~~~m~~ 458 (600)
.++....
T Consensus 94 ~l~~~~~ 100 (476)
T KOG0376|consen 94 DLEKVKK 100 (476)
T ss_pred HHHHhhh
Confidence 7776543
No 340
>PRK09169 hypothetical protein; Validated
Probab=76.79 E-value=2.1e+02 Score=35.82 Aligned_cols=449 Identities=9% Similarity=0.034 Sum_probs=244.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHhhCC---------CCCcchHHHHHHHHHcCCCHHHHHHHHccCC-----------CCC
Q 007517 8 SWTAMVRGYVEEGMITEAGTLFWQMP---------EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP-----------EKD 67 (600)
Q Consensus 8 ~~~~ll~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----------~~~ 67 (600)
.|..+...+++.-+.....+.+..+- .-+...+..++++++|..+-..+...-..+. .-|
T Consensus 124 ~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~ 203 (2316)
T PRK09169 124 QLAHLGNKLSKYPDRPACMAAIAWIAGQLLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMD 203 (2316)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcc
Confidence 45556666666555444333332221 3466677888888888777665544433331 124
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHhhCC----C-------CCcccHHHHHHHHHhCCChHHHHHH----HhhcCC-----
Q 007517 68 VVAQTNMVLGYCQDGRVDEGREIFDEMP----K-------KNVISWTTMISGYVNNNRIDVARKL----FEVMPE----- 127 (600)
Q Consensus 68 ~~~~~~li~~~~~~g~~~~A~~~~~~m~----~-------~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~----- 127 (600)
......++++++|-=+-......-+.+. . -+......+++++.|-.+.+.+... -.++..
T Consensus 204 ~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr 283 (2316)
T PRK09169 204 AQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLR 283 (2316)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhh
Confidence 4455566777776644443333222221 1 1344566778888876554433222 222222
Q ss_pred --CCcchHHHHHHHHhcCCChHHHHHHHh----hCC-------CCCccchhHHHHHHHhcCCHHHHHHHH----Hhcc--
Q 007517 128 --KNEVSWTAMLMGYTQCGRIQDAWELFK----AMP-------MKSVVASNSMILGLGQNGEVQKARVVF----DQMR-- 188 (600)
Q Consensus 128 --p~~~t~~~ll~~~~~~g~~~~a~~~~~----~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~f----~~~~-- 188 (600)
-|..-....++++++-.+-+.+...-. .+. .-+..-....+++++|..+.+.+.... +.+.
T Consensus 284 ~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~ 363 (2316)
T PRK09169 284 LALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARD 363 (2316)
T ss_pred hhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhC
Confidence 466677888888888766544332222 211 233344456778888888766543322 2222
Q ss_pred -----cCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHc-C--CccCchhHhhHHHHHhhhcchHHHHHHHHHHH--
Q 007517 189 -----EKDDATWSGMIKVYERKGYELE----VIDLFTLMQKE-G--VRVNFPSLISVLSVCASLASLDHGRQVHAQLV-- 254 (600)
Q Consensus 189 -----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~-g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-- 254 (600)
.-+..-....+.++.+-++-+. |..+...+... + -..|..-...++.+|++.+.-+.+.+....+.
T Consensus 364 ~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~r 443 (2316)
T PRK09169 364 AGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAAR 443 (2316)
T ss_pred hhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 1145556667788887765432 33344444332 1 12567778889999998876554433332221
Q ss_pred --Hc---CCCCchhhHHHHHHHHHHcCCHHHH----HhhhhhcCC-------CCHHHHHHHHHHHHhcCChHHHHH----
Q 007517 255 --RC---QFDVDVYVASVLITMYIKCGELVKG----KLIFDNFAS-------KDIVMWNSIISGYAQYGLGEKSLK---- 314 (600)
Q Consensus 255 --~~---~~~~~~~~~~~li~~y~~~g~~~~A----~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~---- 314 (600)
.. .-..+..-....+.+++|.++.+.. ..+...+.. -+..-....+.++++-++.+....
T Consensus 444 l~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~a 523 (2316)
T PRK09169 444 LAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEA 523 (2316)
T ss_pred HhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 11 1134456666778888887765422 333333321 245566778888888877655432
Q ss_pred HHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHH----HHHHHhHhcC--CCCCChHHHHHHHHHHhhcCCHH----
Q 007517 315 VFHEMFSS---GVMPDDVTLVGVLSACSYTGKVKEGR----EIFESMKSKY--LVEPKTEHYACMVDLLGRAGQVE---- 381 (600)
Q Consensus 315 ~~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~----~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~---- 381 (600)
+..++... --.-|..-+..++.++++-++.+.+. .+...+..+- .-..+.......+.+++|.+.-.
T Consensus 524 LA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~ 603 (2316)
T PRK09169 524 LADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRA 603 (2316)
T ss_pred HHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHH
Confidence 22222221 12335566778889999877744333 3333332221 11245677888899999987643
Q ss_pred HHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCC-----CCCchHHHHHHHHHhcCCch
Q 007517 382 DAMKLIEAMP------FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ---LEP-----KNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 382 ~A~~~~~~m~------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~~~~~g~~~ 447 (600)
.|..+..... -.-|.--+..+++++.+-.+.+........+-. .+| -++.....+++++++-.+.+
T Consensus 604 Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~ 683 (2316)
T PRK09169 604 AAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEA 683 (2316)
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcH
Confidence 2333444431 123677788899999998877665544443332 111 13345666778888777766
Q ss_pred HHHHHHHHH
Q 007517 448 DVAELRKNM 456 (600)
Q Consensus 448 ~a~~~~~~m 456 (600)
.+.+.-..+
T Consensus 684 ~c~~Aa~aL 692 (2316)
T PRK09169 684 ACRAAALAL 692 (2316)
T ss_pred HHHHHHHHH
Confidence 544444444
No 341
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=76.49 E-value=81 Score=31.58 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=50.5
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 007517 395 DAIIWGSL---LGACRTHMKLDLAEVAAKKLLQLEPK-NAGPYILLSNIYA-SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 458 (600)
|...|.+| +..+.+.|-+..|.++.+-++.++|. ||..-...++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445544 45678899999999999999999999 8887778888885 77888878887776654
No 342
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.99 E-value=17 Score=28.11 Aligned_cols=58 Identities=7% Similarity=0.119 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHH-HcCCCCchhhHHHHH
Q 007517 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV-RCQFDVDVYVASVLI 269 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li 269 (600)
++.+-+..+....+.|++....+.|.||-+.+++..|.++++-++ +.|. +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 444555666667788999999999999999999999999998777 3332 333455444
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=75.33 E-value=24 Score=35.79 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=78.6
Q ss_pred hcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 305 QYGLGEKSL-KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 305 ~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
..|+.-.|- ++|.-++...-.|+.+.+.+.| ..+.|.++.+.+.+....+. +.....+..+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 345554443 4555555555567776665555 45778888888887766543 345667778888888888999998
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 384 MKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 384 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..+-+.| +-+ .++.+...-.......|-++++.-.+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 8888777 211 13333333334445667788888888888887765
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.82 E-value=5.7 Score=23.46 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998765
No 345
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.31 E-value=20 Score=34.25 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=58.0
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHhcccC-C-----hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHH
Q 007517 162 VASNSMILGLGQNGEVQKARVVFDQMREK-D-----DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS 235 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 235 (600)
.+...++..-....+++++...+-++... + ..+-.+.+..+ -.-++++++.++..=.+.|+-||.+|+..++.
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D 143 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD 143 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence 33444555545556677777766665532 1 01111222222 23356677777777777788888888888888
Q ss_pred HHhhhcchHHHHHHHHHHHHcC
Q 007517 236 VCASLASLDHGRQVHAQLVRCQ 257 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~~ 257 (600)
.+.+.+++..|.++.-.++...
T Consensus 144 ~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHhcccHHHHHHHHHHHHHHH
Confidence 8888888877777776666543
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.22 E-value=23 Score=27.70 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=32.7
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 389 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 345678999999999999999999999999998876544332345444
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.14 E-value=4 Score=23.84 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++..++.+|...|++++|.++++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 348
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.05 E-value=42 Score=26.15 Aligned_cols=49 Identities=4% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC
Q 007517 77 GYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE 127 (600)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
.+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 34455666666666666666666666555442 34444444444444433
No 349
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.03 E-value=1.2e+02 Score=32.54 Aligned_cols=155 Identities=14% Similarity=0.043 Sum_probs=85.6
Q ss_pred HHhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 303 YAQYGLGEKSLKVFHEMFS-------SGVMPDDVTLVGVLSACSYTG-----KVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
+....+.+.|+.+|+.+.+ .| +......+-.+|.+.. +.+.|..++....+. | .|+....-..
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~ 333 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGV 333 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHH
Confidence 4445567777777777655 44 2223344444554432 556677777776653 3 3444444333
Q ss_pred HHHHhh-cCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-C
Q 007517 371 VDLLGR-AGQVEDAMKLIEAMPFE--PDAIIWGSLLGACR--THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ-G 444 (600)
Q Consensus 371 i~~~~~-~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 444 (600)
....+. ..+...|.++|...... ++...+.++.-... ...+.+.|...+.++-+.++. .+...+...+... +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccc
Confidence 333333 24567888888776212 22222322221111 335788888888888887732 3333333333222 8
Q ss_pred CchHHHHHHHHHHhCCCccC
Q 007517 445 RFHDVAELRKNMRKRNVIKP 464 (600)
Q Consensus 445 ~~~~a~~~~~~m~~~g~~~~ 464 (600)
+++.+.-.+..+.+.|....
T Consensus 412 ~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYEVA 431 (552)
T ss_pred cccHHHHHHHHHHHhhhhHH
Confidence 88888888888877775533
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.76 E-value=33 Score=30.71 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC--CCCChHHHHHHHHHHhhcCCHHHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL--VEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
+|.+.|-++...+.--+......+..-| ...+.+++.+++....+-+. -.+|+..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444444444443332222222222222 23444444444444433211 123444444444444444444443
No 351
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.09 E-value=78 Score=34.26 Aligned_cols=183 Identities=19% Similarity=0.229 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC----------chhHhhHHHHHhhhcchHHHHHHHHHHHHcC--CCCc
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN----------FPSLISVLSVCASLASLDHGRQVHAQLVRCQ--FDVD 261 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~ 261 (600)
+-..++-.|....+++..+++.+.+++- || .+.|...++-=-+.|+.++|..+.-.+++.. +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 4455666777778888888888877653 32 1334445555556677778777666665532 3343
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT---LVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~ 338 (600)
+|+-||++ |+.|- +-+.|...+..+.|+++|++..+ +.|+..+ +..|+.+-
T Consensus 280 ---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 280 ---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred ---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 45556653 22221 12234455666789999998876 5777653 44455443
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.+. ++...+ +. ..--.|-..++|.|.++.-.+.++-. +.+.+-...+|+.+|.+.
T Consensus 334 G~~--Fens~E----lq---------~IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GEH--FENSLE----LQ---------QIGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hhh--ccchHH----HH---------HHHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHH
Confidence 221 111111 11 11123445678888888777666532 234455567789999999
Q ss_pred HHHHhccCCCCC
Q 007517 419 AKKLLQLEPKNA 430 (600)
Q Consensus 419 ~~~~~~~~p~~~ 430 (600)
.++|.++.|...
T Consensus 389 ae~mfKLk~P~W 400 (1226)
T KOG4279|consen 389 AEMMFKLKPPVW 400 (1226)
T ss_pred HHHHhccCCcee
Confidence 999999998753
No 352
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.85 E-value=79 Score=28.74 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=33.2
Q ss_pred CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhh-HHHHHH--HHHHcCChHHHHHHHHHHHHc
Q 007517 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDAT-WSGMIK--VYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-~~~li~--~~~~~g~~~~A~~~~~~m~~~ 221 (600)
+.-+.++|-|.-.+...|+++.|.+.|+...+-|+.- |..+=+ ++---|++.-|.+-|.+.-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3334556666666666677777777776666544321 222111 122345666666555554443
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.62 E-value=16 Score=34.55 Aligned_cols=60 Identities=17% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++.....|...|.+.+|.++.++++.++|-+...+-.|...|+..|+--.|.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 334456789999999999999999999999988899999999999998888888888754
No 354
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=69.56 E-value=1.4e+02 Score=30.58 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=61.3
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
+..+-..-+.++++.+..+..-.+-.-....|...-..-+.+....|. .+|......... .|+......+......
T Consensus 160 d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 160 DALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAV 235 (410)
T ss_pred CHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHh
Confidence 333334444444444443222222222334555555556666667776 566666555332 2222222222222222
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMP 391 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 391 (600)
.| .+++...+..+.++ +. +-...+.++++.|+...+.-+++.|.
T Consensus 236 ~~-~~~a~~~L~~ll~d----~~--vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 236 AG-GPDAQAWLRELLQA----AA--TRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred CC-chhHHHHHHHHhcC----hh--hHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 22 33566666555543 33 44567777888888887777777775
No 355
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.97 E-value=7.8 Score=42.10 Aligned_cols=115 Identities=14% Similarity=0.235 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMK 385 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 385 (600)
+.++++.+.+.+...--| .++|.-+.+.|-.+-|..+.+.=..++ +....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 455666666554432222 134445567777777776655433332 23457899999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH
Q 007517 386 LIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 386 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
...+.. |..+|..|...-..+|+.+.|+..+++.... ..|.-.|.-.|+.++-.++
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHH
Confidence 888764 7788999999999999999999988877543 3333444445555444443
No 356
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.93 E-value=1.1e+02 Score=28.78 Aligned_cols=239 Identities=17% Similarity=0.264 Sum_probs=134.6
Q ss_pred cCCHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc---CCc--cCchhHhhHHHHHhhhc
Q 007517 174 NGEVQKARVVFDQMREK-------DDATWSGMIKVYERKGYELEVIDLFTLMQKE---GVR--VNFPSLISVLSVCASLA 241 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~~ 241 (600)
..+.++|+.-|++..+- .-.+...||..+.+.|++++.++.|.+|..- .+. -+..+.++++...+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44677777777766532 2234456788888888888888888887532 222 23445666666655555
Q ss_pred chHHHHHHHHHHHHc-----CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--------CC-------HHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRC-----QFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--------KD-------IVMWNSIIS 301 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 301 (600)
+.+.-..+++.-.+. +-..--.+-+.|...|...|++..-.+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 554444444332221 0011112334566677777777777777665532 11 246666788
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHh-----ccCCHHHHHHHHHHhHhcCCC--CCC---hHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSG-VMPDDVTLVGVLSACS-----YTGKVKEGREIFESMKSKYLV--EPK---TEHYACM 370 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~~~~~~~~--~p~---~~~~~~l 370 (600)
.|....+-.+...+|++...-. .-|.+... .+|+-|. +.|.+++|..-|-+.-+.+.- .|. ---|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888777778888776432 34444443 5666664 457787776544444443321 222 2236667
Q ss_pred HHHHhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 371 VDLLGRAGQVEDAMKLIE--AM-PF--EPDAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~--~m-~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
..++.+.|-- =|+ +. |. .|.....+.|+.+|... +..+-++++
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 7788777621 111 11 33 35566678888887654 444434433
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=67.83 E-value=8.5 Score=24.86 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 434 ILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458899999999999999999888643
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.42 E-value=23 Score=32.08 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
+.-+..+.+.+++++|+...+.- .-+| |...-..|+..++..|++++|..-++-+-++.|+.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 34456677788888888776544 4455 45566677888888999999988888888888876
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=66.72 E-value=2.4e+02 Score=32.41 Aligned_cols=50 Identities=14% Similarity=-0.005 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMK 411 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 411 (600)
++...-...+..+++.|..+.+...+..+-..+|..+-...+.++...+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 44555555555555555544332222222113444444444444444443
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.47 E-value=1.9e+02 Score=31.04 Aligned_cols=272 Identities=11% Similarity=0.037 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcccC-ChhhHHHHHHH-----HHHcCChHHHHHHHHHHHH-------cCCccCchhHhhHHHHHhhhc--
Q 007517 177 VQKARVVFDQMREK-DDATWSGMIKV-----YERKGYELEVIDLFTLMQK-------EGVRVNFPSLISVLSVCASLA-- 241 (600)
Q Consensus 177 ~~~A~~~f~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 241 (600)
...|.+.++..... ++..-..+... +....+++.|+.+|+.+.. .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777766554 33333333322 4456788888888888866 44 3334445555555432
Q ss_pred ---chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH-cCCHHHHHhhhhhcCCC-CHHHHHHHHHHHH----hcCChHHH
Q 007517 242 ---SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK-CGELVKGKLIFDNFASK-DIVMWNSIISGYA----QYGLGEKS 312 (600)
Q Consensus 242 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~g~~~~A 312 (600)
+.+.|..++....+.|.+ +....-..+..... -.+...|.++|...... .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 566688888888877733 33322222222222 23567788887766542 3333222222222 23367788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHH---h--h--cCCHHHHHH
Q 007517 313 LKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLL---G--R--AGQVEDAMK 385 (600)
Q Consensus 313 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~---~--~--~g~~~~A~~ 385 (600)
..++++..+.| .|-..--...+..+.. +..+.+.-.+..+..- |.+.-...-..+.+.. . + ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888777 4443333334444444 5555555444444332 2211111111111111 0 1 124445555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-C--CchHHHHHHHHHHh
Q 007517 386 LIEAMPFEPDAIIWGSLLGACRTH----MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ-G--RFHDVAELRKNMRK 458 (600)
Q Consensus 386 ~~~~m~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 458 (600)
++.+....-+......|...|... .+++.|...+.++.+.. +.....++.++... | .+..|.+++....+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 555553333444444444333222 35666666666665554 34555566665432 1 14666666666554
No 361
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.42 E-value=4.3 Score=39.07 Aligned_cols=59 Identities=14% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.+++.+.+....|++-+..+++++|+....|-.-..+-...|.|++|...+....+.++
T Consensus 155 ~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 155 ASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred cceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 33444444444444444445555554444444444444444555555555444444443
No 362
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.42 E-value=16 Score=33.40 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=58.8
Q ss_pred CHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 379 QVEDAMKLIEAM-PFEPDAII-WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 379 ~~~~A~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
+++.|..-+.+. .+.|+..+ |..=+-.+.+..+++.+..--.+++++.|+.......++........+++|...+.+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444433333 45677644 5555666777788888888888888889988888888888888888889998888877
Q ss_pred HhC
Q 007517 457 RKR 459 (600)
Q Consensus 457 ~~~ 459 (600)
.+.
T Consensus 105 ~sl 107 (284)
T KOG4642|consen 105 YSL 107 (284)
T ss_pred HHH
Confidence 543
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.62 E-value=65 Score=33.94 Aligned_cols=99 Identities=11% Similarity=0.033 Sum_probs=54.3
Q ss_pred HHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 171 LGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
..+.|+++.|.++-.+. .+..-|..|..+..+.|++..|.+.|.+... |..++-.+...|+.+....+-
T Consensus 647 al~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 34556666666655443 2456677777777777777777777765543 344555555556555444444
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
....+.|. . |...-+|...|+++++.+++.
T Consensus 716 ~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 716 SLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence 44444441 1 222233444555555555543
No 364
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.01 E-value=1e+02 Score=27.01 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=75.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChH-HHHHH--HHHHhhcC
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE-HYACM--VDLLGRAG 378 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l--i~~~~~~g 378 (600)
.++.+..++|+.-|.++.+.|...-.+ ............|+...|...|+++-....+ |.+. -..-| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 456777888888888888776433222 1222233456778888888888888765332 2221 11111 23456678
Q ss_pred CHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 379 QVEDAMKLIEAMPF--EPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 379 ~~~~A~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
.+++...-.+.+.. .|- ...-..|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88887777776621 221 33345666667788888888888887776
No 365
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=62.23 E-value=78 Score=25.10 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35566666666665542 223333333445566778887744444455577777776543 456777777777776655
Q ss_pred CCCCCCHHHH
Q 007517 322 SGVMPDDVTL 331 (600)
Q Consensus 322 ~g~~p~~~t~ 331 (600)
.| .|....|
T Consensus 98 ~g-~~~~q~F 106 (116)
T PF09477_consen 98 SG-SPELQAF 106 (116)
T ss_dssp -S-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 4444444
No 366
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.22 E-value=16 Score=28.08 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=27.1
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+++.++.+|+++..-..++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555667777667777777777777777777766666543
No 367
>PRK12798 chemotaxis protein; Reviewed
Probab=61.16 E-value=1.9e+02 Score=29.26 Aligned_cols=179 Identities=14% Similarity=0.173 Sum_probs=115.1
Q ss_pred cCCHHHHHhhhhhcCC----CCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCCHH
Q 007517 275 CGELVKGKLIFDNFAS----KDIVMWNSIISGYA-QYGLGEKSLKVFHEMFSSGVMPDD----VTLVGVLSACSYTGKVK 345 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 345 (600)
.|+.++|.+.+..+.. +.+..+-+|+.+-. ...++.+|+++|++..-. .|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888999999888765 34566777776644 456899999999987653 4433 33444455677889999
Q ss_pred HHHHHHHHhHhcCCCCCChHHH-HHHHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHY-ACMVDLLGRA---GQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKK 421 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~-~~li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 421 (600)
++..+-.....+|.-.|=...+ ..++..+.+. -..+.-..++..|.-.--...|-.+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9887776666655444433222 2233333333 34455556666664222356788888888999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHh-----cCCchHHHHHHHHH
Q 007517 422 LLQLEPKNAGPYILLSNIYAS-----QGRFHDVAELRKNM 456 (600)
Q Consensus 422 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 456 (600)
++.+.... ..-...+..|.. ..+.+++.+.+..+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 99876432 333444455533 34455666555543
No 368
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.99 E-value=76 Score=25.32 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
-|..|+.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578888999999999999999988876
No 369
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.92 E-value=52 Score=30.12 Aligned_cols=64 Identities=13% Similarity=0.031 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHhccC--CC----CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 397 IIWGSLLGACRTHMKLDL-------AEVAAKKLLQLE--PK----NAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
..+--+...|+..|+.+. |...|+++.+.+ |. .......++.++.+.|+.++|.+.+.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345555666777777544 444444444422 22 23456678889999999999999999987543
No 370
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.59 E-value=1e+02 Score=27.73 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=49.6
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKL 412 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 412 (600)
..|++++|..-|...... .++. ...|..-..++.+.+.++.|.+-..+. .+.|. ......-..+|.+...+
T Consensus 107 ~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 345555555555544442 1111 223444445566667777766655544 33332 12222223456777788
Q ss_pred HHHHHHHHHHhccCCCC
Q 007517 413 DLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~ 429 (600)
+.|+.-++++++.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 99999999999999876
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.04 E-value=2.9e+02 Score=30.94 Aligned_cols=215 Identities=16% Similarity=0.047 Sum_probs=115.4
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchh-------hHHHHHH-HHHHcCCHHHHHhhhhhcCC--------CCHHHHHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVY-------VASVLIT-MYIKCGELVKGKLIFDNFAS--------KDIVMWNSIIS 301 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 301 (600)
....++.+|..+.+++...-..|+.. .+++|-. .....|+++.|.++-+.... ..++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888776643232221 2233222 22345788888776654432 36677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HH--HHHhccCC--HHHHHHHHHHhHhcCCC-----CCChHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG---VL--SACSYTGK--VKEGREIFESMKSKYLV-----EPKTEHYAC 369 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll--~a~~~~g~--~~~a~~~~~~~~~~~~~-----~p~~~~~~~ 369 (600)
+..-.|++++|..+..+..+..-.-|...|.. +. ..+...|. ..+....|......+.- .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88899999999988877655422333333322 21 22445563 33333344433332111 112344555
Q ss_pred HHHHHhhcCCHHHHHHH----HHhC-CCCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCCCchHHH---
Q 007517 370 MVDLLGRAGQVEDAMKL----IEAM-PFEPD--AII--WGSLLGACRTHMKLDLAEVAAKKLLQL--EPKNAGPYIL--- 435 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~----~~~m-~~~p~--~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~--- 435 (600)
+...+.| ++.+..- ++-- ...|. ... +..|.......|+.+.|.....++..+ ++.-...|..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 3333322 2211 11222 221 225667778899999999998888764 2321122222
Q ss_pred HH--HHHHhcCCchHHHHHHHH
Q 007517 436 LS--NIYASQGRFHDVAELRKN 455 (600)
Q Consensus 436 l~--~~~~~~g~~~~a~~~~~~ 455 (600)
.+ ..-...|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 11 122456888888776655
No 372
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=58.70 E-value=34 Score=25.91 Aligned_cols=35 Identities=9% Similarity=0.236 Sum_probs=18.8
Q ss_pred cCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChH
Q 007517 81 DGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 81 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 116 (600)
.|+.+.|+++++.++ +....+...++++-..|.-+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 45555555555555555433
No 373
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.70 E-value=1.1e+02 Score=28.95 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSS--GVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR- 376 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~- 376 (600)
|.+++..+++.+++...-+-.+. .++|...-..++ .|++.|....+.++-..-...-+ .-+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 67778888888877765554332 244444333333 46777887777777666554311 2223447777766654
Q ss_pred ----cCCHHHHHHHHHh
Q 007517 377 ----AGQVEDAMKLIEA 389 (600)
Q Consensus 377 ----~g~~~~A~~~~~~ 389 (600)
.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 6888888888744
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.68 E-value=77 Score=25.27 Aligned_cols=28 Identities=14% Similarity=0.509 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
.-|..++..|...|.+++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999999877
No 375
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=58.00 E-value=95 Score=25.89 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQVE---DAMKLIEAM-P-FEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
++..+--.+..++.+..+.+ +-..+++.. + -.| .......|.-++.+.++++.+.++.+.+++.+|+|.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34444444555555544433 333344443 1 122 223344466678899999999999999999999884
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=57.62 E-value=1.3e+02 Score=29.21 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=13.0
Q ss_pred HHHHHHHHHhccCCCCCch
Q 007517 414 LAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~ 432 (600)
.|.+...++.+.+|.-|..
T Consensus 380 ~AvEAihRAvEFNPHVPkY 398 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKY 398 (556)
T ss_pred HHHHHHHHHhhcCCCCcHH
Confidence 4666777788888876543
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.98 E-value=1.8e+02 Score=29.49 Aligned_cols=122 Identities=13% Similarity=0.054 Sum_probs=62.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhHhcCCC-CCChHHHHHHHHHHhh
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPDDV--TLVGVLSACS--YTGKVKEGREIFESMKSKYLV-EPKTEHYACMVDLLGR 376 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~~~~~~~~-~p~~~~~~~li~~~~~ 376 (600)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-+.++|.+.++........ .-....+..++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 218 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKA 218 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHH
Confidence 344788999999999999886 566554 3334444443 355778888888877653110 0112233333333222
Q ss_pred cCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHH--HcCCHHHHHHHHHHHhc
Q 007517 377 AGQVEDAMKLIEAMPFEPD-AIIWGSLLGACR--THMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 377 ~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 424 (600)
...+.........-+-++. .....-+.++-+ ..|+++.|...+-++++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 219 LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2222222211111111111 223333444444 35888888776665554
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.67 E-value=27 Score=22.58 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.41 E-value=1.7e+02 Score=27.11 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH---HHHH--HHH-cCCHHHHHHHHHHHhccCCCCCch
Q 007517 372 DLLGRAGQVEDAMKLIEAM---PFEPDAIIWGS---LLGA--CRT-HMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~~--~~~-~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
+.-+..|++.+|.++|++. .+..+..-|.. ++.+ |.. ..|.-.+.+.+++-.+++|.-..+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 4446778899999999887 22333333332 2222 322 378888888999999999975444
No 380
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.01 E-value=3.5e+02 Score=30.66 Aligned_cols=128 Identities=14% Similarity=0.166 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
-|..|+..|...|..++|++++.+....--.-|... .+.-..+.+.+.+.+-+ +. .|+-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NL----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhccc-ch----hHHHHHh
Confidence 477899999999999999999998876321011110 11111233444443322 11 1222222
Q ss_pred H---cCCHHHHHhhhhhcCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007517 274 K---CGELVKGKLIFDNFASKDIVMWNS-IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339 (600)
Q Consensus 274 ~---~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 339 (600)
. ..+.+...++|..-......+.+. -+-.|......+-++.+++.+....-.++..-.+.++.-|.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 2 345555666665411101111110 12345556667777788888777665566666666655553
No 381
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.89 E-value=64 Score=29.88 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=63.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCCHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 371 VDLLGRAGQVEDAMKLIEAM---------PFEPDAIIWG-----------SLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+-+.+.|++.+|..-+.+. .-+|...-|- ..-.++...|++-++++.-...+...|.+.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34456677777776665543 2345443332 222445567899999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+|..-+.+.+..=+.++|..=+....+.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999888888887778888888777654
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=55.01 E-value=59 Score=34.09 Aligned_cols=67 Identities=24% Similarity=0.150 Sum_probs=33.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
|...+.+.|..-+|-.++.+. .+ ...+.++..+.+++....+++.|++.++.++.++|+++..-..|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 444444455555555544433 11 12334455555555555556666666666666555555444433
No 383
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.97 E-value=42 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 393 EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=54.53 E-value=5.5e+02 Score=32.52 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=96.6
Q ss_pred HHHHHHHcCCCHHHHHHHHccCC----CC--CcchHHHHHHHHHhcCChHHHHHHHh-hCCCCCcccHHHHHHHHHhCCC
Q 007517 42 VMLGGFIRDSRIDDARRLFDMMP----EK--DVVAQTNMVLGYCQDGRVDEGREIFD-EMPKKNVISWTTMISGYVNNNR 114 (600)
Q Consensus 42 ~ll~~~~~~g~~~~A~~~~~~m~----~~--~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~li~~~~~~g~ 114 (600)
.|..+-.+++.+..|...++.-. +. ....+-.+...|+.-+++|....+.. ....|+ ...-|--....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 45566778899999998888832 21 12233344458888888888777766 233333 2334555677899
Q ss_pred hHHHHHHHhhcCC--CC-cchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhH-HHHHHHhcCCHHHHHHHHHhc
Q 007517 115 IDVARKLFEVMPE--KN-EVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNS-MILGLGQNGEVQKARVVFDQM 187 (600)
Q Consensus 115 ~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~~f~~~ 187 (600)
++.|...|+++.+ |+ ..+++-++......|.++......+-.. .....-+++ =+.+-.+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 9999999999988 55 6678877777777777777766555444 222222222 2334467777777666555
Q ss_pred ccCChhhHHHH
Q 007517 188 REKDDATWSGM 198 (600)
Q Consensus 188 ~~~~~~~~~~l 198 (600)
..+..+|...
T Consensus 1543 -~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 -DRNIEYWSVE 1552 (2382)
T ss_pred -cccccchhHH
Confidence 5566667655
No 385
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.47 E-value=1.7e+02 Score=26.71 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+..++.+.+.+...+|+...++-.+. +|.. -+-..++..++-.|++++|..-++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33445555555555555555554443 3322 233334455555555555554444
No 386
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.89 E-value=2.6e+02 Score=28.54 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 323 (600)
.|+.-|.-.|++.+|.....++.-| ..+.+.+++.+.-+.|+...-+.++++....|
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4666777788888888888776554 45677777777777777666666666666554
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.77 E-value=22 Score=26.27 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=28.9
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHH---HHHHHHHhcCCchHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYI---LLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~a~~~ 452 (600)
...+.+.|+..++++++..++.+.-|. .|+.+|+..|++++.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777776555444443 455667777777776654
No 388
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.43 E-value=2e+02 Score=27.20 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=45.7
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 339 (600)
-|+.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-..++. |.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL~-yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVLQ-YL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHHH-HH
Confidence 46777788889999999999998877655444444332233333333333222 2222233333 44
Q ss_pred ccCCHHHHHHHHHHhHhc
Q 007517 340 YTGKVKEGREIFESMKSK 357 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~ 357 (600)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 467888888877766553
No 389
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.90 E-value=22 Score=32.35 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=36.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..+.|+.+.|.+++.+. ...| ....|-.+...-.+.|+.+.|.+.+++.++++|++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44556666666666665 3333 35567666666667777777777777777766654
No 390
>PRK10941 hypothetical protein; Provisional
Probab=52.85 E-value=60 Score=30.90 Aligned_cols=66 Identities=15% Similarity=0.066 Sum_probs=50.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.+.+-..|.+.++++.|++..+.+ .+.|+ +.-|.--.-.|.+.|.+..|..-++..++..|++|.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 445666788888899988888887 44454 5567767777888899999999888888888887654
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.76 E-value=22 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 410 MKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
|+.+.+..++++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4567777788887777776655555443
No 392
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=52.69 E-value=2.3e+02 Score=27.61 Aligned_cols=83 Identities=19% Similarity=0.018 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHhHhcCCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 343 KVKEGREIFESMKSKYLV---EPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
-.+++.+.|+.......- ..++.....+.....+.|..++-..+++...-.++...-..++.+.....+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888887763111 34667777788888888887766666666544567888889999998899999999999
Q ss_pred HHHhcc
Q 007517 420 KKLLQL 425 (600)
Q Consensus 420 ~~~~~~ 425 (600)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 998884
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=51.07 E-value=2.2e+02 Score=26.95 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=48.7
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH-HHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL-LSNIY 440 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~ 440 (600)
-++.....+...|.+.|++.+|+.-|-.-. .|+...+..++......| .|.....|.. .+--|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~---------------~~~e~dlfi~RaVL~y 151 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKG---------------YPSEADLFIARAVLQY 151 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHT---------------SS--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhc---------------CCcchhHHHHHHHHHH
Confidence 367788889999999999999998776542 233333322333333333 3333333333 44457
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|+...|...+....++
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 7788899999988877654
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.98 E-value=64 Score=27.21 Aligned_cols=63 Identities=17% Similarity=0.075 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 380 VEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 380 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
-+.|.++.+-|+ .....-.........|++..|..+.+.++..+|++...-...+++|...|.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 456777777774 223333344556778999999999999999999998777777777765554
No 395
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.74 E-value=1.9e+02 Score=25.87 Aligned_cols=53 Identities=6% Similarity=-0.033 Sum_probs=24.3
Q ss_pred HHHHHcCCHHHHHhhhhhcCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007517 270 TMYIKCGELVKGKLIFDNFASKDIVM--WNSIISGYAQYGLGEKSLKVFHEMFSS 322 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~ 322 (600)
......|..++|+..++....++-.+ -..-.+.+...|+-++|..-|.+..+.
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444555555555555544443222 111223445555555555555555444
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.67 E-value=66 Score=28.77 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444444333334678888888888888888888888777776
No 397
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=49.64 E-value=95 Score=25.46 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+..+-++......+.|+.......|+||-+.+++..|.++|+-++.+- .+....|-.+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHHH---------HHHHHHHHh
Confidence 445556666677789999999999999999999999999999988753 344445666554 334455555
Q ss_pred C
Q 007517 391 P 391 (600)
Q Consensus 391 ~ 391 (600)
+
T Consensus 136 G 136 (149)
T KOG4077|consen 136 G 136 (149)
T ss_pred C
Confidence 4
No 398
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.45 E-value=49 Score=24.54 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=22.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDD--VTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
...+.++|+..|+...+.-..|.. .++..++.|++..|++++..++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666655543222221 2455555555555555555443
No 399
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.40 E-value=3.2e+02 Score=28.30 Aligned_cols=175 Identities=13% Similarity=0.087 Sum_probs=105.5
Q ss_pred HHHHHhhhhhcCCCC--H--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH-------HHHHHHH-HH
Q 007517 278 LVKGKLIFDNFASKD--I--------VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV-------TLVGVLS-AC 338 (600)
Q Consensus 278 ~~~A~~~~~~~~~~~--~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-------t~~~ll~-a~ 338 (600)
.|+|....++.++.| . .....++..-.-.|++.+|++-..+|.+-- -.|... -...++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 345555555555544 1 222333334455799999999999997632 234311 1122333 24
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH--------HHHH--H
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGS--------LLGA--C 406 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~--------ll~~--~ 406 (600)
...+.++.|+.-|....+... .-| ...-..+.-.|.+.|+-+.-.++++.++ .|+..++.+ ++.+ .
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~-~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTE-SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhh-HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHH
Confidence 556889999988877665321 122 2233456678999999999899999884 232222111 1112 2
Q ss_pred HHcCCHHHHHHHHHHHhccC-CC-----CCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLE-PK-----NAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~-p~-----~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
...+++.+|.+...+.+++. -. ..-..+.|+......|+..++.+...
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 35689999999999888753 11 12345668888888899888876544
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.26 E-value=2.8e+02 Score=29.35 Aligned_cols=62 Identities=21% Similarity=0.225 Sum_probs=43.7
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHH-hCCCccCC
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPK-NAGPYILLSNIYA-SQGRFHDVAELRKNMR-KRNVIKPP 465 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~-~~g~~~~~ 465 (600)
....+.|-+..|.+..+.+++++|. ||.....+++.|+ ++.+++--.++++..+ .+.+..-|
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~P 414 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLP 414 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcC
Confidence 4456778888888888888888887 7777777888875 5667777777776664 33343334
No 401
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.40 E-value=86 Score=31.93 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=28.2
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 391 PFEPDA--IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 391 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
+++|.. .++.+-++.+.+++++..|-.+.++++++.|..
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 555643 356777788889999999999999999999865
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.06 E-value=80 Score=23.96 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChH
Q 007517 175 GEVQKARVVFDQMREKDDATWSGMIKVYERKGYEL 209 (600)
Q Consensus 175 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 209 (600)
|+.+.|+++++.++ +.+-.|..++.++-..|...
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 44445555555544 44444444554444444433
No 403
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.21 E-value=33 Score=32.72 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=37.3
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
..+.|+.++|..+|+.. .+.|+ +....-+......+++.-+|..++-+++.+.|.+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 34677788888887755 44443 33333344444455677777777777777777765443
No 404
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.86 E-value=2.1e+02 Score=26.64 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=81.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS-YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
++..+-+.|+++++++.++++...+...+..--+.+-.||- ..|....+++++..+..+..-..+ .....++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45666778888888888888888766655554444444442 234445556666555443211111 2233333333221
Q ss_pred ------CCHHHHHHHHHhC--CC--CCCHHH-HHHHHHHHH----H-------cCCHHHHHHHHHHHhc-----cCCCCC
Q 007517 378 ------GQVEDAMKLIEAM--PF--EPDAII-WGSLLGACR----T-------HMKLDLAEVAAKKLLQ-----LEPKNA 430 (600)
Q Consensus 378 ------g~~~~A~~~~~~m--~~--~p~~~~-~~~ll~~~~----~-------~g~~~~a~~~~~~~~~-----~~p~~~ 430 (600)
.--.+..++++.. |. .+...+ |.-+-+-|. . ..-.+.|...++++.+ +.|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 1123445555543 21 122222 222221111 1 1123667777777665 567775
Q ss_pred chHHHHHH----HHHhcCCchHHHHHHHHHHhCCC
Q 007517 431 GPYILLSN----IYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 431 ~~~~~l~~----~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
.-....++ .|--.|+.++|.++-+...+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 44333222 24568999999999888776544
No 405
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=46.79 E-value=3.6e+02 Score=28.16 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=116.5
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
+.|....-++++.++..-..+-.+.+-.+|.. .+-..+-.++..|.++ ..++-..+|+++.+. .-|...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHH
Confidence 45666677888888888888888877777764 5677888999999998 567889999998875 345555555554
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPK------TEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPDAIIWGSLLGAC 406 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~ 406 (600)
-+...++.+.+..+|.++.... -|. .+.|.-|+..-+ .+.|.-..+...+ +...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrf--I~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRF--IPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHh--cchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4555588888888888887642 231 345666655332 3455555555544 3333455555566777
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
....++.+|++++...++.+..+..+--.++
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHH
Confidence 8888999999999988877655544433333
No 406
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.06 E-value=36 Score=23.92 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=12.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
.+|.||.+.|++++|.++.+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555543
No 407
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=45.91 E-value=52 Score=20.11 Aligned_cols=30 Identities=20% Similarity=-0.113 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHhccCCC
Q 007517 399 WGSLLGACRTHMKLDLAEVA--AKKLLQLEPK 428 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 428 (600)
|-.+.-.+-..|++++|..+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34455556666777777777 3355555543
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=1.1e+02 Score=29.88 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
.+|--=..-|.+..++..|...|.+- --.| +.+.|+.-..+-...|++..++.-..+++.++|.+...|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34444556688889999999988765 1123 46677777777778899999999999999999999888888888
Q ss_pred HHHhcCCchHHHHHHHH
Q 007517 439 IYASQGRFHDVAELRKN 455 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~~ 455 (600)
++....++++|...-++
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 88888886666654443
No 409
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.61 E-value=46 Score=25.11 Aligned_cols=58 Identities=14% Similarity=0.278 Sum_probs=33.6
Q ss_pred HHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChH
Q 007517 59 LFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 59 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 116 (600)
+++.+.+.++.+....-...+..-+.++|.++++..+.+...+|....+++-..|...
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4444444555555444444444556666666666666666666666666666665543
No 410
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.85 E-value=3.1e+02 Score=27.66 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHccCC------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-------------CCc
Q 007517 39 SWTVMLGGFIRDSRIDDARRLFDMMP------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK-------------KNV 99 (600)
Q Consensus 39 ~~~~ll~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------~~~ 99 (600)
.+.-+...|..+|+++.|.+.|.+.. +.-+..|-.+|..-.-.|++......-.+... +-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHhhcCC----------CCcchHHHHHHHHhcCCChHHHHHHHhhCC-----CCCccch
Q 007517 100 ISWTTMISGYVNNNRIDVARKLFEVMPE----------KNEVSWTAMLMGYTQCGRIQDAWELFKAMP-----MKSVVAS 164 (600)
Q Consensus 100 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----------p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-----~~~~~~~ 164 (600)
..+..|.....+ .++.|.+.|-.... |...+....+.+++.-++-+.-..+..... +..+.++
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr 309 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR 309 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcc---------cCChhhHHHHHH
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMR---------EKDDATWSGMIK 200 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~ 200 (600)
..|...| .+++....++++++. .|.+.+.-.+|.
T Consensus 310 ~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 310 EILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 411
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.75 E-value=2.2e+02 Score=27.15 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=11.5
Q ss_pred HHHHhccCCCCCchHHHHHH
Q 007517 419 AKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~ 438 (600)
+--...++|..|..+-.+..
T Consensus 267 yLLv~R~DPA~Pss~p~i~k 286 (309)
T PF07163_consen 267 YLLVVRLDPASPSSLPWIYK 286 (309)
T ss_pred HHHheeecCCCCCcchHHHH
Confidence 33445677777766554433
No 412
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.58 E-value=1.3e+02 Score=25.55 Aligned_cols=50 Identities=12% Similarity=0.276 Sum_probs=37.7
Q ss_pred ChhhHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh
Q 007517 191 DDATWSGMIKVYERKGY-ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 240 (600)
+-.+|++++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 56678888888866555 345677888888878888888888888887654
No 413
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=44.57 E-value=3.7e+02 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=17.9
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFA 289 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~ 289 (600)
.|+.-|.+++++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46677888888888888887775
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.43 E-value=39 Score=23.71 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 177 VQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 177 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
++...++++.+.. .|-.-.-.+|.+|.+.|++++|.++..++.+
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444432 1333444567788888888888887777654
No 415
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.15 E-value=70 Score=24.15 Aligned_cols=60 Identities=8% Similarity=0.163 Sum_probs=36.8
Q ss_pred HHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 007517 152 LFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEV 211 (600)
Q Consensus 152 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 211 (600)
++..+...++.+....-...+...+.+.|.++++.++.++..+|..+..++...|...-|
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 333333444444444444445555677777777777777777777777777776655443
No 416
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.13 E-value=3.7e+02 Score=27.53 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=30.4
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007517 296 WNSIISGYAQ---YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339 (600)
Q Consensus 296 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 339 (600)
+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4445555544 4788999999999999988887665554444443
No 417
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=44.09 E-value=3.5e+02 Score=27.18 Aligned_cols=108 Identities=18% Similarity=0.344 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHhcc---CCCC---
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSL------------LGACRTHMKLDLAEVAAKKLLQL---EPKN--- 429 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~---~p~~--- 429 (600)
..|...+..+|++++|..++.+.+++ ||+++ +..|...+|+-.|..+-++.... +|+-
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 45677888999999999999988543 33322 36688889999998888877652 2321
Q ss_pred -CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEE
Q 007517 430 -AGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMF 479 (600)
Q Consensus 430 -~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f 479 (600)
...|..+.....+.+.+=++.+.++...+.|-.+....-|+.+-..+-.|
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 24588888888899999999999999988765555444576654444334
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.61 E-value=1.3e+02 Score=24.73 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=30.7
Q ss_pred HHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 414 LAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 414 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.+..+|+.|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777765 4455566788888888888888888888764
No 419
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=43.28 E-value=3.3e+02 Score=26.64 Aligned_cols=10 Identities=40% Similarity=0.700 Sum_probs=7.7
Q ss_pred hHHHHHHHhh
Q 007517 533 SEKLAVAYGL 542 (600)
Q Consensus 533 ~e~la~~~~~ 542 (600)
-+.||.+||+
T Consensus 320 l~~MA~aFgV 329 (393)
T KOG0687|consen 320 LESMAKAFGV 329 (393)
T ss_pred HHHHHHHhCc
Confidence 4678888886
No 420
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.88 E-value=48 Score=31.77 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL 335 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 335 (600)
.-||..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346789999999999999999999999999877666765544
No 421
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.52 E-value=6.1e+02 Score=29.59 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAMPF-EPDAIIWGSLLGA 405 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~~ 405 (600)
|..+++.+-..+..+.+.++-..+.+.. +++ ..+++++..-....|.+-+|.+.+-+.+. +.-......|+..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l--~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENL--PDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5666777777778888887777766642 332 45678888888889999999888776421 1113345666666
Q ss_pred HHHcCCHH------------HHHH-HHHHHhccCCC-CCchHHHHHHHHHhcCCchHHHHH
Q 007517 406 CRTHMKLD------------LAEV-AAKKLLQLEPK-NAGPYILLSNIYASQGRFHDVAEL 452 (600)
Q Consensus 406 ~~~~g~~~------------~a~~-~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~ 452 (600)
....|..+ +.+. +++..-...|- .+..|..|---+...++|.+|..+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 66666543 2333 33333333333 234555555556788888888765
No 422
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.49 E-value=97 Score=20.35 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=20.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666666666777766666666665555543
No 423
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=42.46 E-value=11 Score=26.71 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.3
Q ss_pred ceEEEecCCcccccCCCccC
Q 007517 576 REIILRDANRFHHFKDGLCS 595 (600)
Q Consensus 576 ~~~~~~~~~~~h~~~~g~cs 595 (600)
..|-+.|.+..|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 46778999999999999864
No 424
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=42.37 E-value=4.7e+02 Score=28.19 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
+...|-.-+..+...++.. ....+.+...-.-.+......++..|.+.|-.+.+..+...+-..-+. ..-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHH
Confidence 3444655555444333222 444445444433334555667777777777777777777655443221 223455566
Q ss_pred HHHHcCCHHHHHhhhhhc
Q 007517 271 MYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~ 288 (600)
.+.++|+......+-+.+
T Consensus 447 ~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHH---------------
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 677777766655544433
No 425
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.11 E-value=1.6e+02 Score=22.48 Aligned_cols=62 Identities=18% Similarity=0.092 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCch-HHHHHHHHH
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGPYILLSNIYASQGRFH-DVAELRKNM 456 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 456 (600)
|......+...+...|+++.|+..+-.+++.+|+ +...-..|+.++...|.-+ -+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566667777788888888888888888776654 3456667777777777643 555555554
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.96 E-value=1.1e+02 Score=23.56 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=15.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334455667777777777776664
No 427
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.93 E-value=3e+02 Score=25.46 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=33.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT 408 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 408 (600)
++.++...|+.+.|..+++...-. ..+......++.. ..+|.+.||..+.+..+-+-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 445555556666666666544211 1122222333333 4456666666666654311113355555555543
No 428
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.59 E-value=5.2e+02 Score=28.17 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=28.8
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCC-------hHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPK-------TEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
-.|++..+.+..+.+.....-.|+ +..+....-.+-..|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457788888888877653221222 1222222223345688999999997
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.37 E-value=2.3e+02 Score=25.17 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=18.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+..|.+.|.+++|.+++++..+ +|++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 3557777777777777777777 66553
No 430
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.03 E-value=85 Score=24.14 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=36.5
Q ss_pred HHHcCCHHHHHHHHHHHhccCCC----C-----CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPK----N-----AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+.||+..|.+.+.+....... . ......++......|.+++|.+.+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35677888887776666653211 1 12344577788899999999999998765
No 431
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=39.60 E-value=2.4e+02 Score=23.96 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 292 DIVMWNSIISGYAQYGL-GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
+-.+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..++.+|.+
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 44456666666644443 23455666666666666666667667766654
No 432
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.56 E-value=35 Score=28.25 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 305 QYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 305 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
..|.-.+|..+|++|.+.|-+||. ++.|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345667899999999999999986 45566544
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.26 E-value=89 Score=20.55 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
..+.|...++..++++|.+.|+..+...+..++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 345566666666667776666665555555444
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.19 E-value=33 Score=28.36 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=22.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 203 ERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 203 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
-..|.-..|-.+|++|+..|-+||. +..|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456677788899999999988885 3444443
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.05 E-value=48 Score=31.78 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHh
Q 007517 194 TWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLI 231 (600)
Q Consensus 194 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 231 (600)
-||..|....+.|+.++|+.++++.++.|+.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 37899999999999999999999999998754444443
No 436
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.66 E-value=4.2e+02 Score=26.57 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCC--ChHHHHHHHHHHh-hcCCHHHHHHHHHhC
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEP--KTEHYACMVDLLG-RAGQVEDAMKLIEAM 390 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~m 390 (600)
+..+.+.|-+..|.++.+-+.. +.| |+...-.+||.|+ ++++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3455666666666666665554 233 3434444555553 556666666665554
No 437
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.47 E-value=4.8e+02 Score=27.14 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=44.5
Q ss_pred hHHHHHHHhhCCCC-Cc--chHHHHHHHHHcCC-CHHHHHHHHccCC--CCCcchHH-----HHHHHHHhcCChHHHHHH
Q 007517 22 ITEAGTLFWQMPEK-NV--VSWTVMLGGFIRDS-RIDDARRLFDMMP--EKDVVAQT-----NMVLGYCQDGRVDEGREI 90 (600)
Q Consensus 22 ~~~A~~~~~~m~~~-~~--~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~-----~li~~~~~~g~~~~A~~~ 90 (600)
++.|..+.+.|... |+ .+++.|...|.... .+..|+.++.+.. ..+...|. .|+..+.-..++..|.++
T Consensus 70 LekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 70 LEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 34444454444422 22 35666667776655 7778888887776 23444554 356677777888989888
Q ss_pred Hhh
Q 007517 91 FDE 93 (600)
Q Consensus 91 ~~~ 93 (600)
+.-
T Consensus 150 Lav 152 (629)
T KOG2300|consen 150 LAV 152 (629)
T ss_pred Hhc
Confidence 654
No 438
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.92 E-value=3.7e+02 Score=25.72 Aligned_cols=55 Identities=11% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH----HHcCCccCchhHhhHH-HHHhhhcchHHHHHHH
Q 007517 196 SGMIKVYERKGYELEVIDLFTLM----QKEGVRVNFPSLISVL-SVCASLASLDHGRQVH 250 (600)
Q Consensus 196 ~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~ 250 (600)
.-+|..+.+.|.+.+|+.+...+ .+..-+|+..+...+= .++-...++.+++.-+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHH
Confidence 45788899999999998865444 4445566655544332 2333344444444333
No 439
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.90 E-value=1.4e+02 Score=28.64 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=18.2
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
.++|..+|.+.+|.++.+....-. +.+...+-.|+..|...|+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhcc
Confidence 334444444444444444443321 2233344444444444444
No 440
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.16 E-value=1.5e+02 Score=31.83 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=27.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCH
Q 007517 298 SIISGYAQYGLGEKSLKVFHEMFSSG--VMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 298 ~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~ 344 (600)
+|..+|..+|++..+..+++...... -+--...++..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56677777777777777777665432 111123455556666666654
No 441
>PF15161 Neuropep_like: Neuropeptide-like
Probab=35.95 E-value=21 Score=23.95 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=11.6
Q ss_pred ccccccchhhHHHHhhh
Q 007517 557 LRVCGDCHSAIKLISKV 573 (600)
Q Consensus 557 l~~c~~~~~~~~~~s~~ 573 (600)
-|-|.|||.+. |+.+.
T Consensus 13 sRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 13 SRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCchhhHHHH-HHHHH
Confidence 47799999876 65543
No 442
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=35.65 E-value=2.6e+02 Score=28.71 Aligned_cols=107 Identities=16% Similarity=0.209 Sum_probs=53.2
Q ss_pred HHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHH-HHHHHHHcCChHHH
Q 007517 138 MGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMREKD---DATWSG-MIKVYERKGYELEV 211 (600)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~-li~~~~~~g~~~~A 211 (600)
.+.+..|.++-.+.+.+.-. .....+-++=+.+.+--|+++-...+.+.-.+++ ..-.+. ||.+| .|+.+
T Consensus 89 WaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~y--kGh~~-- 164 (615)
T KOG0508|consen 89 WAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACY--KGHVD-- 164 (615)
T ss_pred hHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeec--cCchH--
Confidence 34445566665555555444 2222333344445555566666655554433321 111222 22222 23333
Q ss_pred HHHHHHHHHcCCccCchhH--hhHHHHHhhhcchHHHHHHH
Q 007517 212 IDLFTLMQKEGVRVNFPSL--ISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 212 ~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~ 250 (600)
+-+.+.+.|..++..++ ++.+.-|+.+|.++-.+.++
T Consensus 165 --I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 165 --IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred --HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence 33444556666666655 67777888888776554443
No 443
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=35.16 E-value=2.5e+02 Score=22.94 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHh-------ccCCCCCchHH----HHHHHHHhcCCchHHHHHHHHH
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLL-------QLEPKNAGPYI----LLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 456 (600)
|...+..|-.++...|++++++.-.++++ +++.+....++ .-+.++...|+.++|.+.|+..
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 34455556666667777766655555444 35555433333 3445677789999998887743
No 444
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.09 E-value=1.7e+02 Score=24.80 Aligned_cols=47 Identities=11% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
-..++..+.+.+.+-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33455555555555556666666665555444444444444444333
No 445
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.05 E-value=5.8e+02 Score=27.16 Aligned_cols=56 Identities=5% Similarity=0.073 Sum_probs=35.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHh-hhcchHHHHHHHHHHH
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA-SLASLDHGRQVHAQLV 254 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~ 254 (600)
+....+.|.+..|+++-+-+.+-...-|+.....+|..++ +..+++--+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455677888888887777766554446666667777665 3345555555555543
No 446
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=34.43 E-value=65 Score=30.82 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=36.2
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP 394 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 394 (600)
-+.|+.++|..+|+....- .| ++....-+........++-+|-+.+-+. .+.|
T Consensus 127 ~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 4679999999999988763 44 3566555655555566677777776655 4445
No 447
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.35 E-value=3.3e+02 Score=28.76 Aligned_cols=58 Identities=10% Similarity=0.026 Sum_probs=37.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhcccC--Chh---hHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMREK--DDA---TWSGMIKVYERKGYELEVIDLFTLMQKE 221 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 221 (600)
...|+.-|.+++++++|..++..|.-. ... +.+.+...+.+..-..+....++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346888999999999999999998732 222 3344445555555455555555555543
No 448
>PRK11619 lytic murein transglycosylase; Provisional
Probab=34.22 E-value=6.7e+02 Score=27.58 Aligned_cols=184 Identities=9% Similarity=-0.058 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCCC--C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFASK--D-IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
+...-+....+.++++.+...+..|... + ..-..=+..++...|+.++|...|++... . .+|..++.+ .+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~ 386 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QR 386 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HH
Confidence 3344444445666666666666666431 1 11122234454556777777777766532 1 234333322 11
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCCh------HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKT------EHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
.|..-. +. ....|.. ..--.-+..+...|...+|...+..+--..+......+...-...|..+.
T Consensus 387 Lg~~~~----~~-----~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ 457 (644)
T PRK11619 387 LGEEYP----LK-----IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDL 457 (644)
T ss_pred cCCCCC----CC-----CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHH
Confidence 221100 00 0000000 00112345566778888888888766223455556666666678888888
Q ss_pred HHHHHHHHhcc---CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007517 415 AEVAAKKLLQL---EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIK 463 (600)
Q Consensus 415 a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 463 (600)
+.....+.... .-.-|..|...+..++..-.++.+.-+--...+.++.+
T Consensus 458 ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 458 SVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCC
Confidence 88777654331 11234557777777777667777664333334666654
No 449
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.99 E-value=1.5e+02 Score=31.26 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=86.8
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--CHHH
Q 007517 325 MPDDVTLVGVLSACSYT--GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVEDAMKLIEAM-PFEP--DAII 398 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 398 (600)
.|+..|...++.-...- ..-+-|-.++..|.. .+.|--...| +...|.| .|+...|.+-+... ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665555433321 223445556655543 2233222222 3444554 68888888877766 3333 2333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...|.....+.|-...|-.++.+.+.+.-..|.++..++++|....+.+.|.+.++...+.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4556666677777788999999988888778899999999999999999999999887664
No 450
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.18 E-value=2.4e+02 Score=28.62 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFAS-----------KDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
.-.|+..++-.|++..|.++++.+.- -.+.++.-+.-+|...+++.+|++.|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777888888887776532 134566667778888888888888887753
No 451
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=33.16 E-value=99 Score=23.68 Aligned_cols=55 Identities=7% Similarity=0.187 Sum_probs=29.6
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 007517 60 FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114 (600)
Q Consensus 60 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 114 (600)
++.+.+.++.+-...-...+..-+.+++.++++.++.+...+|..+..++-..+.
T Consensus 26 ~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 26 LIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 3333334444444333333444556666666666666666666666666655443
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.05 E-value=1.8e+02 Score=25.41 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
-..++..+...+.+-.|.++++.+.+.+..++..|.-..|..+...|
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 33444444445555566666666666665555555555555555444
No 453
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.88 E-value=4e+02 Score=24.60 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHH--cCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007517 266 SVLITMYIK--CGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK 343 (600)
Q Consensus 266 ~~li~~y~~--~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 343 (600)
..+++++.. .++++.|.+.+-.-.-.. .-..-++.++...|+.+.|+.+++.+.-..-.++ ....++.+ ...+.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~~-~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~--~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHPSLIP-WFPDKILQALLRRGDPKLALRYLRAVGPPLSSPE--ALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCCCCCc-ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHH--HHHHHHHH-HHcCC
Confidence 344444433 466777777764432211 1112367777778889999988887643222222 22222333 34578
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAII 398 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 398 (600)
+.+|..+-+..... -....+..++..+.....-....+.+-.+|+.+....
T Consensus 156 v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 156 VTEAFSFQRSYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred HHHHHHHHHhCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 88888776654432 1144666666666544432333334444565554433
No 454
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=32.80 E-value=1.3e+02 Score=22.98 Aligned_cols=49 Identities=4% Similarity=0.135 Sum_probs=29.4
Q ss_pred CccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCCh
Q 007517 160 SVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYE 208 (600)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 208 (600)
++.+....-...+...+.+.+.++++.++.+++.+|..+..++...+..
T Consensus 33 gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 33 DILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQE 81 (90)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChH
Confidence 3333333333344445667777777777777777777777777555443
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.71 E-value=2.4e+02 Score=25.07 Aligned_cols=56 Identities=13% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHhcCCCCCC-hH-----HHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPK-TE-----HYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIW 399 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~-~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~ 399 (600)
++.|..+|+.+.+....+.+ .. .--..+-.|.+.|.+++|.+++++.--.|+....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~ 146 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKL 146 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhH
Confidence 45556666666554321100 01 1123345567777777777777776224444433
No 456
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=32.57 E-value=6e+02 Score=26.57 Aligned_cols=239 Identities=10% Similarity=0.038 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHcCCccCchhHhhHHHHHhhhc------chHHHHHHHHHHHHcC-C-CCchhhHHHHHHHHHHcCCHHH-
Q 007517 210 EVIDLFTLMQKEGVRVNFPSLISVLSVCASLA------SLDHGRQVHAQLVRCQ-F-DVDVYVASVLITMYIKCGELVK- 280 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~y~~~g~~~~- 280 (600)
....+|++..+. -|+...+...|..|...- .+.....+++...+.+ . +.....|..+.-++.+...-.+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334555555442 345555555666664432 2333344444444432 2 2334455566666665554333
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHhcC-ChH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHH--HHHHHHhH
Q 007517 281 GKLIFDNFASKDIVMWNSIISGYAQYG-LGE-KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK-VKEG--REIFESMK 355 (600)
Q Consensus 281 A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a--~~~~~~~~ 355 (600)
|..+-.+....+...|-.-+....... +++ .-.++|...+..-..+-...+++.. .|+ ++.. ..+.....
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~ 452 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL 452 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH
Confidence 333333455556666665554444221 111 1122233333221222223333322 111 1111 11222222
Q ss_pred hcCCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHhccCCCCC
Q 007517 356 SKYLVEPKT-EHYACMVDLLGRAGQVEDAMKLIEAMP-F-EPDAIIWGSLLGACRT--HMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 356 ~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+. + .|+. ..-+.+++-+.+.|-..+|...+.... . +|+...+..++..-.. .-+..-+..+++.+...-..++
T Consensus 453 s~-~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 453 SV-I-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred Hh-c-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 21 1 3443 334677888888999999999988771 1 4567777777654221 2235666677777665333455
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
..+......=...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 555554444446677776666655443
No 457
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.34 E-value=3.5e+02 Score=26.20 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=45.1
Q ss_pred ChhhHHHHHHHHHH---cCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc-----hHHHHHHHHHHHHcCC
Q 007517 191 DDATWSGMIKVYER---KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS-----LDHGRQVHAQLVRCQF 258 (600)
Q Consensus 191 ~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 258 (600)
+...+-.+|+++.+ -.+++.|+-++.+|.+.|-.|....-..++.+.-..|. +..|...++.....|.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 44444456777755 47899999999999999988877766666666655552 3344444444444453
No 458
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.31 E-value=2.3e+02 Score=23.38 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=33.3
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 389 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
.+.+-|++.+...-+.+|++-+|+..|.++++-+...-++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 3467799999999999999999999999999987764443
No 459
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.94 E-value=5.5e+02 Score=25.89 Aligned_cols=100 Identities=15% Similarity=0.224 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 344 (600)
-..|..-+-.+|++++|..++.+.+ +.||.+| ...+...-++++|+ .|...+++
T Consensus 134 Tk~L~~ike~~Gdi~~Aa~il~el~---VETygsm-------~~~ekV~fiLEQmr----------------KOG~~~D~ 187 (439)
T KOG1498|consen 134 TKMLAKIKEEQGDIAEAADILCELQ---VETYGSM-------EKSEKVAFILEQMR----------------LCLLRLDY 187 (439)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhcc---hhhhhhh-------HHHHHHHHHHHHHH----------------HHHHhhhH
Confidence 3456667777888888888776654 3344433 23344445556654 34445566
Q ss_pred HHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 345 KEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
-.|.-+-.++..++--+|+ ...|+.|+......+.+-.+-+.++..
T Consensus 188 vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 188 VRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 6666666666555433454 345788888888888888888877776
No 460
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=31.89 E-value=1.7e+02 Score=29.77 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=16.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
+...+++..+-.||+..|.++++.+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccC
Confidence 34455666666677777666666554
No 461
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.73 E-value=4.3e+02 Score=24.60 Aligned_cols=55 Identities=13% Similarity=0.294 Sum_probs=37.0
Q ss_pred HhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 282 KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 282 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
..+|.-..+|.+.....|+..+. .+++++|.+++.++-+.|..|.... +.+.+++
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 44555555666666666666554 5678899999999999998887653 2344444
No 462
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.46 E-value=4e+02 Score=24.56 Aligned_cols=54 Identities=17% Similarity=0.366 Sum_probs=24.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH----HHhhcCCHHHHHHHHHh
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD----LLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~ 389 (600)
+......|+++.|.+....+... -+..|...+-.|.. -+.|.|..++|+++.+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33445556666665555544322 12223222221111 13466667777766654
No 463
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.82 E-value=3e+02 Score=29.71 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=16.9
Q ss_pred HHHHHHhcCCChHHHHHHHhhCC
Q 007517 135 AMLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 135 ~ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
+++.+|...|++-.+.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 67777777777777777777665
No 464
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.80 E-value=8.2e+02 Score=27.61 Aligned_cols=218 Identities=12% Similarity=0.064 Sum_probs=105.1
Q ss_pred HHhcCCHHHHHHHHHhcc----cCCh-------hhHHHHHHH-HHHcCChHHHHHHHHHHHHcC----CccCchhHhhHH
Q 007517 171 LGQNGEVQKARVVFDQMR----EKDD-------ATWSGMIKV-YERKGYELEVIDLFTLMQKEG----VRVNFPSLISVL 234 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~~~----~~~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll 234 (600)
.....++++|..+..+.. .++. ..|+.+-.. ....|++++|+++-+.....= ..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888776654 2221 245554432 345678888888877765531 122334455555
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHH-----HHHHHcCCH--HHHHhhhhhcCC-----CC-----HHHHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI-----TMYIKCGEL--VKGKLIFDNFAS-----KD-----IVMWN 297 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~y~~~g~~--~~A~~~~~~~~~-----~~-----~~~~~ 297 (600)
.+..-.|++++|..+.....+..-..+...+.... ..+...|+. ++....|..... .. +.++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66666788888887777666543333333332221 223344532 222333332221 11 23334
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHhcCCCCC----ChHHHHHH
Q 007517 298 SIISGYAQY-GLGEKSLKVFHEMFSSGVMPDDVTLV--GVLSACSYTGKVKEGREIFESMKSKYLVEP----KTEHYACM 370 (600)
Q Consensus 298 ~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l 370 (600)
.+..++.+. +...+|..-+.--......|-...+. .+.......|++++|...++++..-. ..+ +-..-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~-~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL-LNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCCCCCchHHHHHHH
Confidence 444444441 11122222222222221122222222 45556667788888888877776532 122 11111122
Q ss_pred H--HHHhhcCCHHHHHHHHHh
Q 007517 371 V--DLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 371 i--~~~~~~g~~~~A~~~~~~ 389 (600)
+ ..-...|+.++|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2 223456777777666655
No 465
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.80 E-value=6.1e+02 Score=26.07 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
...|+.-|...|++.+|.+-++++ |+-...+.+.+++.+.-+.|+-+.-+.+++..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345777788889999999999887 44445777888888888877766544444443
No 466
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.69 E-value=3.1e+02 Score=22.60 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 007517 415 AEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 415 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
...+|..|.. +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666665 344455667888888888888888888876
No 467
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.59 E-value=2.3e+02 Score=27.04 Aligned_cols=39 Identities=3% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 352 ESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 352 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
++..+..|-.-....+..+.+-|++.++.+.+.+...+.
T Consensus 103 ~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 103 REKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 333333333334667778888899999988888877654
No 468
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=30.55 E-value=1.2e+02 Score=29.33 Aligned_cols=76 Identities=7% Similarity=0.047 Sum_probs=49.5
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGS-LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 360 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
+..|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. ----+..+++++.+..+|.+.+.++|++|..+..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 3456666666665555566666666666655 2233 4555633 1223557789999999999999999998877554
No 469
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=30.24 E-value=1.7e+02 Score=27.66 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+=+++.+.++++.|.+..++.+.++|++|....--+-+|.+.|...-|.+-+....+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 344466888899999999999999999999877888899999999999999888875543
No 470
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=30.16 E-value=87 Score=22.71 Aligned_cols=29 Identities=3% Similarity=-0.024 Sum_probs=16.1
Q ss_pred HHHHHHHHccCC---CCCcchHHHHHHHHHhc
Q 007517 53 IDDARRLFDMMP---EKDVVAQTNMVLGYCQD 81 (600)
Q Consensus 53 ~~~A~~~~~~m~---~~~~~~~~~li~~~~~~ 81 (600)
.+-|+.++..+. ++.+..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 445555555555 34566666666555443
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.04 E-value=2.9e+02 Score=22.07 Aligned_cols=48 Identities=6% Similarity=0.057 Sum_probs=20.4
Q ss_pred HHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC
Q 007517 78 YCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE 127 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
+...|++++|...=.....||...|.+|-. .+.|-.+++...+.++..
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 444555555533333333355555544433 244555555555554433
No 472
>PHA02875 ankyrin repeat protein; Provisional
Probab=29.94 E-value=6e+02 Score=25.78 Aligned_cols=205 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCHHHHHHHHccCCCCCcch--HHHHHHHHHhcCChHHHHHHHhhCCCCCcc--cHHHHHHHHHhCCChHH
Q 007517 42 VMLGGFIRDSRIDDARRLFDMMPEKDVVA--QTNMVLGYCQDGRVDEGREIFDEMPKKNVI--SWTTMISGYVNNNRIDV 117 (600)
Q Consensus 42 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~ 117 (600)
..+...+..|+.+-+..+++.-..++... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.
T Consensus 4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 4 VALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Q ss_pred HHHHHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC--
Q 007517 118 ARKLFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMREK-- 190 (600)
Q Consensus 118 A~~~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-- 190 (600)
+..+++.-.. .....-.+.+...+..|+.+-...+++.-. ........+.+...+..|+.+-+..+++.-...
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~ 163 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163 (413)
T ss_pred HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC
Q ss_pred -ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHh---hHHHHHhhhcchHHHHHHHH
Q 007517 191 -DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLI---SVLSVCASLASLDHGRQVHA 251 (600)
Q Consensus 191 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~ 251 (600)
|..-++.+..+..... .++.+.+.+.|..|+...-. +.+...+..|+.+-+..+++
T Consensus 164 ~d~~g~TpL~~A~~~g~-----~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGD-----IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred CCCCCCCHHHHHHHcCC-----HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=29.51 E-value=1.7e+02 Score=23.19 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc
Q 007517 168 ILGLGQNGEVQKARVVFDQM 187 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~ 187 (600)
+.-|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 474
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.31 E-value=5.5e+02 Score=27.74 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=61.5
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCc
Q 007517 375 GRAGQVEDAMKLIEAM-PFEP-D------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRF 446 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m-~~~p-~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 446 (600)
.+..++..+.+.|..- ..-| | ......|--+|....+.+.|.++++++.+.+|.++..-..+..+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 3455667777766533 1111 1 234566666777788899999999999999998887777888888888999
Q ss_pred hHHHHHHHHHHhC
Q 007517 447 HDVAELRKNMRKR 459 (600)
Q Consensus 447 ~~a~~~~~~m~~~ 459 (600)
++|.......+..
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9998887777644
No 475
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.20 E-value=6.4e+02 Score=25.81 Aligned_cols=44 Identities=11% Similarity=0.054 Sum_probs=28.3
Q ss_pred hHHHHHHHHHH---cCChHHHHHHHHHHHHcCCccCchhHhhHHHHH
Q 007517 194 TWSGMIKVYER---KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC 237 (600)
Q Consensus 194 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 237 (600)
.+..+++++.+ .++++.|+.++..|...|..|....-..+..++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34555666555 477888888888888888776644444444443
No 476
>PRK09169 hypothetical protein; Validated
Probab=29.13 E-value=1.3e+03 Score=29.48 Aligned_cols=422 Identities=9% Similarity=0.023 Sum_probs=229.8
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHccCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHhhCC---------
Q 007517 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMP-----------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMP--------- 95 (600)
Q Consensus 36 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------- 95 (600)
+......++++++|..+-+.++..-..+. .-|..-....++++++-.+-+.+...-+.+.
T Consensus 245 ~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l 324 (2316)
T PRK09169 245 RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGL 324 (2316)
T ss_pred CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhh
Confidence 34556777888888766554443322221 1245556677788887765443332222111
Q ss_pred --CCCcccHHHHHHHHHhCCChHHH----HHHHhhcCC-------CCcchHHHHHHHHhcCCChHH----HHHHHhhCC-
Q 007517 96 --KKNVISWTTMISGYVNNNRIDVA----RKLFEVMPE-------KNEVSWTAMLMGYTQCGRIQD----AWELFKAMP- 157 (600)
Q Consensus 96 --~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~-------p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~- 157 (600)
.-|..-....++++.+-.+.+.+ ..+-.++.. -|..-..+.++++++-++-+. +..+...+.
T Consensus 325 ~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~ 404 (2316)
T PRK09169 325 LQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLAR 404 (2316)
T ss_pred hhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 11334455567777776665532 223333322 466678888888888776542 223333222
Q ss_pred ------CCCccchhHHHHHHHhcCCHHHHHHHHHhcc----c-------CChhhHHHHHHHHHHcCChHH----HHHHHH
Q 007517 158 ------MKSVVASNSMILGLGQNGEVQKARVVFDQMR----E-------KDDATWSGMIKVYERKGYELE----VIDLFT 216 (600)
Q Consensus 158 ------~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~-------~~~~~~~~li~~~~~~g~~~~----A~~~~~ 216 (600)
.-|..-....+++++|.+.-+.+.+....+. . -|.--....+.++.+-++... +..+..
T Consensus 405 ~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~ 484 (2316)
T PRK09169 405 DAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAA 484 (2316)
T ss_pred chhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 1233334456778888776554443333221 1 144456667777776655432 233344
Q ss_pred HHHHc---CCccCchhHhhHHHHHhhhcchHHHHHHHHHH----HH---cCCCCchhhHHHHHHHHHHcCCHHH----HH
Q 007517 217 LMQKE---GVRVNFPSLISVLSVCASLASLDHGRQVHAQL----VR---CQFDVDVYVASVLITMYIKCGELVK----GK 282 (600)
Q Consensus 217 ~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~---~~~~~~~~~~~~li~~y~~~g~~~~----A~ 282 (600)
.+... .-..+..-+..++.++++.+..+.....-..+ .. .--..+..-....+.+++|-.+.+. |.
T Consensus 485 rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~ 564 (2316)
T PRK09169 485 RLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAE 564 (2316)
T ss_pred HHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 34221 11245667888999999888776654433322 22 1123456667778888888776433 23
Q ss_pred hhhhhcCC-------CCHHHHHHHHHHHHhcCChH----HHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 283 LIFDNFAS-------KDIVMWNSIISGYAQYGLGE----KSLKVFHEMFSSG---VMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 283 ~~~~~~~~-------~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~g---~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.++..+.. -|...+...+.++++-+... .+..+.....+.. -.-|..-+..++.++++-.+.+...
T Consensus 565 aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr 644 (2316)
T PRK09169 565 ALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCR 644 (2316)
T ss_pred HHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHH
Confidence 33333322 25667777888888876542 2334444443321 1235566788899999988877666
Q ss_pred HHHHHhHhcC----C--CCCChHHHHHHHHHHhhcCCHHHHHHHHH----hCC------CCCCHHHHHHHHHHHHHcCCH
Q 007517 349 EIFESMKSKY----L--VEPKTEHYACMVDLLGRAGQVEDAMKLIE----AMP------FEPDAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 349 ~~~~~~~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~----~m~------~~p~~~~~~~ll~~~~~~g~~ 412 (600)
.....+.... + -..+......++.+++|-.+.+.+.+... .+. -.-|..-....++++.+--+-
T Consensus 645 ~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~ 724 (2316)
T PRK09169 645 QAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEE 724 (2316)
T ss_pred HHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCc
Confidence 5544443211 1 12356777888899999887665333322 221 122556667777777765443
Q ss_pred HHH----HHHHHHHhc----cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 413 DLA----EVAAKKLLQ----LEPKNAGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 413 ~~a----~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+.. ..++..+.+ ..--++.-....+|++++--+-..+.+.+-.+.
T Consensus 725 ~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La 777 (2316)
T PRK09169 725 EACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLA 777 (2316)
T ss_pred cHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 322 233333332 111233455667777777766666666655554
No 477
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.88 E-value=4.9e+02 Score=24.35 Aligned_cols=80 Identities=6% Similarity=-0.067 Sum_probs=42.0
Q ss_pred HHcCCHHHHHhhhhhcC--CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhccCCHHHHH
Q 007517 273 IKCGELVKGKLIFDNFA--SKDI-VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVL-SACSYTGKVKEGR 348 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~ 348 (600)
.....++.|...|.+.. .|++ .-|+.=+..+.+..+++.+..=-++..+ +.||.+--...+ .+......+++|.
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 33455666666655443 2444 3345555666666666666655555544 456655332222 3334455566666
Q ss_pred HHHHHh
Q 007517 349 EIFESM 354 (600)
Q Consensus 349 ~~~~~~ 354 (600)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 665554
No 478
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.83 E-value=3.3e+02 Score=22.36 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
..|......+.+.|++++|.++|+
T Consensus 100 ~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 100 LFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334444444444444444444443
No 479
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.55 E-value=5.6e+02 Score=24.92 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh----------hcCCHH
Q 007517 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG----------RAGQVE 381 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~----------~~g~~~ 381 (600)
-.++++.|...++.|.-..|..+.-.+++.=.+.....+++.+..+ |. -+..|+..++ -.|++.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~--rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQ--RFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hh--hhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 3567888888899999999888887888888888899999888764 21 1333333222 257888
Q ss_pred HHHHHHHhCC
Q 007517 382 DAMKLIEAMP 391 (600)
Q Consensus 382 ~A~~~~~~m~ 391 (600)
.-+++++.-|
T Consensus 336 ~nmkLLQ~yp 345 (370)
T KOG4567|consen 336 VNMKLLQNYP 345 (370)
T ss_pred HHHHHHhcCC
Confidence 8888887764
No 480
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.13 E-value=5.5e+02 Score=24.75 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 166 SMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 166 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
.++..+.+..++....+.+..+. .+..-...+......|++..|+++..+.++
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555555555443 233444567777788888888888877765
No 481
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.70 E-value=1e+03 Score=27.59 Aligned_cols=129 Identities=5% Similarity=-0.056 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CCCCCh--------HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKY---LVEPKT--------EHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAI 397 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 397 (600)
.+...++-..+..|.++-+.+..+.+.+.+ ..+-+. ..|-.=+.++.....++++.+.+...+..--..
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 768 (932)
T PRK13184 689 RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILY 768 (932)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHH
Confidence 344444445567788888777776665422 111111 112222455666667788877776653111133
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.+..++.-+..+++.+.-..+.+.+....+.. ......-+.+|.-..+|++|-+++....
T Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (932)
T PRK13184 769 AFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYP 831 (932)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCC
Confidence 34444555556666666666666555543322 1223346677888889999999886544
No 482
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.25 E-value=3.1e+02 Score=28.65 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=59.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--------CCchHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--------NAGPYI 434 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~ 434 (600)
++..|-..+.-|...+++++|.++..-.+ +...|.+|......+.+...++..+..+.+.+.- -+.--.
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~ 648 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEE 648 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHH
Confidence 45557777888888999999999887654 5678888888777788877777777666654321 111122
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~ 454 (600)
.++....-.|+..||.-++.
T Consensus 649 ~mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 649 QMAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHHhccchhhhHHHH
Confidence 34444445677777766554
No 483
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=27.24 E-value=3.6e+02 Score=25.29 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcCCCCHHHHHH--HHHHHHhcCChHHHHHHHHHH----HHCC-CCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007517 278 LVKGKLIFDNFASKDIVMWNS--IISGYAQYGLGEKSLKVFHEM----FSSG-VMPDDVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 278 ~~~A~~~~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m----~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
+..|.+.|......-...+-. |...|...|++++|+++|+.+ .+.| ..+...+...++.+..+.|+.+....+
T Consensus 161 L~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q ss_pred HHHhHh
Q 007517 351 FESMKS 356 (600)
Q Consensus 351 ~~~~~~ 356 (600)
.-++..
T Consensus 241 ~leLls 246 (247)
T PF11817_consen 241 SLELLS 246 (247)
T ss_pred HHHHhc
No 484
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=26.81 E-value=4.7e+02 Score=23.48 Aligned_cols=160 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred HcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc--------CCCCchhhHHHHHHHHHHcCCHHHH----------
Q 007517 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC--------QFDVDVYVASVLITMYIKCGELVKG---------- 281 (600)
Q Consensus 220 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~y~~~g~~~~A---------- 281 (600)
+.|..+|...++.++..+.+..-..+-..+.-.+..+ +...+......=+..+-+.|++.+-
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred ---------------HhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 007517 282 ---------------KLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346 (600)
Q Consensus 282 ---------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 346 (600)
..+..+.+++..+.|.....+-++.-+.+++-+.|--=..- +++..|-+.-++.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGi----------S~m~~Yhk~~qW~K 150 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGI----------SLMYSYHKTLQWSK 150 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHH----------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHh-------------cCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007517 347 GREIFESMKS-------------KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 347 a~~~~~~~~~-------------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 389 (600)
++++++.|.+ ..+..+.-...|.-...+.+.|.+|.|..++++
T Consensus 151 GrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 151 GRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 485
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.69 E-value=1e+03 Score=26.95 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=43.6
Q ss_pred HHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHH
Q 007517 138 MGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTL 217 (600)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 217 (600)
+.|...|++++|.++-+.-...-..+...-.+.|...+++..|-+++-++. .++-.+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 455666777777766443311111233334456667777777777777763 33444444444444444 4444322
Q ss_pred HHHcCCccCchh
Q 007517 218 MQKEGVRVNFPS 229 (600)
Q Consensus 218 m~~~g~~p~~~t 229 (600)
=+-..++|...+
T Consensus 441 KKL~~lt~~dk~ 452 (911)
T KOG2034|consen 441 KKLDRLTPEDKT 452 (911)
T ss_pred HHHhhCChHHHH
Confidence 222334444433
No 486
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=24.68 E-value=3.5e+02 Score=21.32 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=11.0
Q ss_pred HHHHHhcCCChHHHHHHHhhCC
Q 007517 136 MLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
++.-|...++.++|..-+.++.
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHhcCCCHHHHHHHHHHhC
Confidence 3444445556665555555544
No 487
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.61 E-value=6.9e+02 Score=24.67 Aligned_cols=126 Identities=13% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhHhcCCCCCCh
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS------YTGKVKEGREIFESMKSKYLVEPKT 364 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~------~~g~~~~a~~~~~~~~~~~~~~p~~ 364 (600)
.|-.-|+- +.+++++.++++....+. |-.+.....|.+|- ..-++..-..+|+.+.. +.|++
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 46666763 235688888888888764 88888887777662 22356667777776654 24543
Q ss_pred H-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 365 E-HYACMVDLLGRAGQVEDAMKLIEAMPFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 365 ~-~~~~li~~~~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
. +.|--+ +.++..-.+.++..++.+.-.|- ...+..-.+.+.+.|..++|...|++++.+.++.
T Consensus 330 vV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 330 VVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred eEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 3 233222 23334446666666666633321 2234444555778888888888888888887664
No 488
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=24.41 E-value=2.1e+02 Score=21.69 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=26.8
Q ss_pred HccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChH
Q 007517 60 FDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 60 ~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 116 (600)
++.+.+.++.+-.-.=..-++..+.++|..+++.++.+...+|....+++-..|...
T Consensus 20 ld~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~ 76 (86)
T cd08323 20 MDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKD 76 (86)
T ss_pred HHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChH
Confidence 333333333333333333334444555555555555555555555555555444433
No 489
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.38 E-value=6.6e+02 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=11.9
Q ss_pred HHHHHHHHHhc-c-cCChhhHHHHHHH
Q 007517 177 VQKARVVFDQM-R-EKDDATWSGMIKV 201 (600)
Q Consensus 177 ~~~A~~~f~~~-~-~~~~~~~~~li~~ 201 (600)
++.+.++...+ . +.+...|..++..
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~ 82 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSN 82 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 44555555555 2 3455555555443
No 490
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=24.02 E-value=31 Score=28.55 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=18.2
Q ss_pred cccccccchhhHHHHhhhhCc------eEEEec
Q 007517 556 NLRVCGDCHSAIKLISKVMGR------EIILRD 582 (600)
Q Consensus 556 ~l~~c~~~~~~~~~~s~~~~~------~~~~~~ 582 (600)
---+||||...+..+.++..- .++.||
T Consensus 49 ~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd 81 (129)
T PF14595_consen 49 TETWCGDCARNVPVLAKIAEANPNIEVRIILRD 81 (129)
T ss_dssp --TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HH
T ss_pred ECCCchhHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 347999999999888888544 566666
No 491
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.75 E-value=7.8e+02 Score=25.01 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=51.4
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH---HHH----HHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAI---IWG----SLLGA 405 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~---~~~----~ll~~ 405 (600)
++-..|+...-..++......-.+.. .....|+|++.|...+.++.|..+..+.. -|+.. -|. .+...
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-~pe~~snne~ARY~yY~GrI 256 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-YPEAASNNEWARYLYYLGRI 256 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-CccccccHHHHHHHHHHhhH
Confidence 34455665555555554433222222 24456777788888888888888887774 22211 121 12223
Q ss_pred HHHcCCHHHHHHHHHHHhccCCC
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
-..++++..|.+.+-.++...|.
T Consensus 257 kaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 257 KAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhcchhHHHHHHHHHHHhCcc
Confidence 34566777777777666666664
No 492
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=23.75 E-value=1.4e+02 Score=21.73 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=27.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
...|+.+.+.+++++....|..|.......+..+....
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~i 49 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEI 49 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44678888999999998888888777766666555433
No 493
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.59 E-value=3.7e+02 Score=21.22 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc
Q 007517 167 MILGLGQNGEVQKARVVFDQMR 188 (600)
Q Consensus 167 li~~~~~~g~~~~A~~~f~~~~ 188 (600)
++.-|...+++++|.+.+.++.
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhC
Confidence 3444444555555555554444
No 494
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.43 E-value=7.1e+02 Score=24.41 Aligned_cols=115 Identities=16% Similarity=0.140 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh---cCCHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR---AGQVEDAMK 385 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~ 385 (600)
.+.-+.++++..+.+ +.+.......|..+.+....+...+-++.+...+ +-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 467778888888772 2344566677888888888888888898888753 3467788877776544 224555555
Q ss_pred HHHhC---------CC------CC--CHHH---HHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 386 LIEAM---------PF------EP--DAII---WGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 386 ~~~~m---------~~------~p--~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+|.+. +. .| +... +..+..-+.+.|..+.|..+++.+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 55443 11 00 1111 2222333457788888888888888864
No 495
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=23.41 E-value=7.3e+02 Score=24.55 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEK-SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 346 (600)
+.+..++.++.+.+..+-+.+..-......++..++-...-.+. +..+++.+... ||......+++|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 34444444444444444333333223333333333332222222 22333333332 677777777777776655555
Q ss_pred HHHHHHHhHh
Q 007517 347 GREIFESMKS 356 (600)
Q Consensus 347 a~~~~~~~~~ 356 (600)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554444443
No 496
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.17 E-value=51 Score=17.11 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=8.1
Q ss_pred cchhhHHHHhh
Q 007517 562 DCHSAIKLISK 572 (600)
Q Consensus 562 ~~~~~~~~~s~ 572 (600)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 45888888873
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.16 E-value=1.1e+03 Score=26.67 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=86.9
Q ss_pred HHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
....||+++.|++.-..+. |..+|..|...-...|+.+-|...|++... |..|--.|.-.|+.++-.+.
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3457899999988766655 556899999999999999999999988654 22222235556888887776
Q ss_pred HHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 351 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
......+ .|... ....-.-.|+.++=.++++..+..|- .|. .-..+|.-++|.++.++...
T Consensus 721 ~~iae~r----~D~~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 6554432 22211 11111236888888889988864432 221 12467888999999888776
No 498
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=23.05 E-value=1.7e+02 Score=29.61 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=8.7
Q ss_pred HHHHHhhcCCHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKL 386 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~ 386 (600)
|+-.|.+.++.+-|+.-
T Consensus 234 lv~CYL~~rkpdlALnh 250 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNH 250 (569)
T ss_pred HHHhhhhcCCCchHHHH
Confidence 44455555555555543
No 499
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.99 E-value=1.6e+02 Score=23.50 Aligned_cols=46 Identities=11% Similarity=0.287 Sum_probs=30.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcch
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASL 243 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 243 (600)
++..+...+.+-.|.++++++.+.+..++..|.-..|..+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4455555566677788888887777666777766666666665543
No 500
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.88 E-value=2.9e+02 Score=24.14 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=32.9
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 319 MFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 319 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
+...|++++..-. .++..+...+..-.|.++++.+.+. +...+..|.---++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665555433 2333443344555677777777664 33444444444556667777653
Done!