Query 007517
Match_columns 600
No_of_seqs 761 out of 4514
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 03:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.4E-42 2.2E-46 369.4 39.2 453 2-459 80-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 5.6E-38 1.9E-42 338.6 30.5 437 3-442 114-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 2.6E-28 8.8E-33 253.2 21.1 198 179-377 8-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.4E-31 234.4 33.7 337 102-444 36-387 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-25 8.8E-30 226.0 38.3 348 105-459 5-368 (388)
6 4g26_A Pentatricopeptide repea 99.9 5.6E-27 1.9E-31 243.2 21.0 200 209-409 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-22 4E-27 214.2 29.6 386 69-459 7-478 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 3.8E-22 1.3E-26 206.8 30.4 328 99-455 26-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 1.1E-22 3.6E-27 214.6 25.0 427 6-436 6-489 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.1E-21 3.9E-26 208.0 31.1 411 40-459 28-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-20 3.7E-25 195.8 31.9 295 160-459 25-358 (450)
12 3ieg_A DNAJ homolog subfamily 99.8 3.8E-18 1.3E-22 170.4 33.5 290 166-459 8-335 (359)
13 3fp2_A TPR repeat-containing p 99.8 1.4E-18 4.7E-23 184.3 30.3 424 6-434 25-500 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 2.8E-18 9.5E-23 171.4 28.9 302 136-442 9-352 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.9E-18 6.4E-23 171.1 22.2 283 80-390 15-308 (449)
16 3hym_B Cell division cycle pro 99.8 1.6E-17 5.6E-22 163.8 28.6 286 158-446 19-321 (330)
17 1b89_A Protein (clathrin heavy 99.8 3.2E-17 1.1E-21 162.3 24.7 342 18-390 15-369 (449)
18 3hym_B Cell division cycle pro 99.8 8E-17 2.7E-21 158.9 27.8 264 190-458 20-298 (330)
19 2xm6_A Protein corresponding t 99.8 3.6E-16 1.2E-20 163.7 33.0 362 67-441 38-451 (490)
20 2ooe_A Cleavage stimulation fa 99.8 5.2E-16 1.8E-20 164.1 33.7 175 280-458 304-491 (530)
21 2ooe_A Cleavage stimulation fa 99.8 6.2E-16 2.1E-20 163.6 33.9 390 34-429 10-496 (530)
22 1xi4_A Clathrin heavy chain; a 99.8 5.9E-15 2E-19 162.2 41.6 373 41-451 989-1376(1630)
23 1fch_A Peroxisomal targeting s 99.8 3.9E-17 1.3E-21 164.0 22.6 292 142-455 37-355 (368)
24 2xm6_A Protein corresponding t 99.8 4E-15 1.4E-19 155.7 36.4 350 96-460 36-433 (490)
25 1fch_A Peroxisomal targeting s 99.8 1.3E-16 4.5E-21 160.1 24.2 277 111-422 37-356 (368)
26 1xi4_A Clathrin heavy chain; a 99.7 1.8E-14 6.1E-19 158.5 40.3 369 10-416 989-1375(1630)
27 3mkr_A Coatomer subunit epsilo 99.7 2.4E-15 8.3E-20 145.4 29.0 268 170-451 8-286 (291)
28 4eqf_A PEX5-related protein; a 99.7 1.9E-16 6.5E-21 158.9 21.2 257 195-455 68-352 (365)
29 4g1t_A Interferon-induced prot 99.7 9.4E-16 3.2E-20 159.6 26.5 322 132-469 96-469 (472)
30 4eqf_A PEX5-related protein; a 99.7 3.4E-16 1.2E-20 157.1 21.2 256 131-421 66-352 (365)
31 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.8E-20 147.8 22.7 246 199-459 6-264 (291)
32 3cv0_A Peroxisome targeting si 99.7 5.7E-16 1.9E-20 152.5 21.1 272 162-456 22-312 (327)
33 3spa_A Mtrpol, DNA-directed RN 99.7 5.2E-17 1.8E-21 173.1 8.8 132 258-390 123-262 (1134)
34 3cv0_A Peroxisome targeting si 99.7 1.4E-14 4.9E-19 142.4 24.9 220 133-356 24-268 (327)
35 4g1t_A Interferon-induced prot 99.6 1.9E-14 6.4E-19 149.7 24.5 371 37-437 51-471 (472)
36 3spa_A Mtrpol, DNA-directed RN 99.6 2E-16 6.8E-21 168.7 9.3 147 161-307 127-286 (1134)
37 2pl2_A Hypothetical conserved 99.6 4.2E-14 1.4E-18 130.5 19.3 194 259-456 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.6 5.7E-14 1.9E-18 132.9 20.6 225 193-459 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.6 6.4E-14 2.2E-18 132.6 18.8 232 162-437 6-254 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 9.2E-13 3.2E-17 135.8 26.3 339 108-461 12-389 (452)
41 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7E-18 130.4 19.9 245 163-443 5-268 (272)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 8.8E-14 3E-18 133.1 17.1 239 206-453 19-269 (275)
43 3e4b_A ALGK; tetratricopeptide 99.5 1.7E-13 5.7E-18 141.4 19.8 376 43-458 9-420 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 1.6E-12 5.5E-17 122.6 21.0 196 262-459 37-238 (252)
45 2ho1_A Type 4 fimbrial biogene 99.5 3.2E-12 1.1E-16 120.5 22.9 204 192-433 37-246 (252)
46 2vq2_A PILW, putative fimbrial 99.5 2E-12 6.7E-17 119.4 20.9 196 261-458 7-210 (225)
47 2q7f_A YRRB protein; TPR, prot 99.5 8.2E-13 2.8E-17 123.7 17.9 196 261-459 22-222 (243)
48 2q7f_A YRRB protein; TPR, prot 99.5 5.6E-13 1.9E-17 124.9 16.5 178 261-441 56-238 (243)
49 2h6f_A Protein farnesyltransfe 99.5 3E-12 1E-16 128.0 22.0 244 192-442 97-365 (382)
50 2vq2_A PILW, putative fimbrial 99.5 5.1E-12 1.7E-16 116.6 21.9 208 191-436 7-222 (225)
51 1ouv_A Conserved hypothetical 99.5 1.1E-11 3.6E-16 118.7 24.6 228 191-460 5-252 (273)
52 1ouv_A Conserved hypothetical 99.5 1.8E-11 6.3E-16 117.0 26.0 191 261-460 5-216 (273)
53 2pl2_A Hypothetical conserved 99.5 2.7E-12 9.1E-17 118.3 19.2 111 276-390 98-211 (217)
54 3u4t_A TPR repeat-containing p 99.5 9.5E-12 3.2E-16 118.7 23.7 189 129-320 2-206 (272)
55 4a1s_A PINS, partner of inscut 99.4 9.3E-13 3.2E-17 134.2 15.7 260 198-459 54-372 (411)
56 3sf4_A G-protein-signaling mod 99.4 2.6E-12 9E-17 130.3 17.9 260 197-458 14-335 (406)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.3E-12 1.1E-16 122.1 16.9 238 173-419 17-269 (275)
58 4e6h_A MRNA 3'-END-processing 99.4 3.2E-10 1.1E-14 120.9 33.5 226 209-440 326-584 (679)
59 3ro2_A PINS homolog, G-protein 99.4 2.7E-12 9.4E-17 126.2 16.2 198 262-459 83-332 (338)
60 2h6f_A Protein farnesyltransfe 99.4 9.9E-12 3.4E-16 124.2 20.3 225 228-458 98-347 (382)
61 3vtx_A MAMA; tetratricopeptide 99.4 2E-11 6.9E-16 109.0 20.1 164 292-459 4-170 (184)
62 4abn_A Tetratricopeptide repea 99.4 1.7E-12 5.7E-17 134.7 14.7 208 243-455 84-317 (474)
63 3sf4_A G-protein-signaling mod 99.4 1.6E-12 5.5E-17 131.9 13.5 154 294-447 188-364 (406)
64 2ond_A Cleavage stimulation fa 99.4 2E-10 6.9E-15 111.9 26.4 218 209-430 33-275 (308)
65 4a1s_A PINS, partner of inscut 99.4 7.5E-12 2.6E-16 127.4 16.2 166 263-428 167-375 (411)
66 3vtx_A MAMA; tetratricopeptide 99.3 4.8E-11 1.6E-15 106.5 17.1 167 260-429 3-174 (184)
67 3ro2_A PINS homolog, G-protein 99.3 3.2E-11 1.1E-15 118.4 17.2 135 294-428 184-335 (338)
68 3nf1_A KLC 1, kinesin light ch 99.3 4.5E-12 1.6E-16 123.4 9.5 238 191-458 26-306 (311)
69 3ulq_A Response regulator aspa 99.3 1E-10 3.4E-15 117.9 19.5 223 235-458 111-367 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.3 7E-11 2.4E-15 127.6 18.8 163 292-458 8-173 (723)
71 3ulq_A Response regulator aspa 99.3 5.2E-11 1.8E-15 120.0 16.7 227 200-426 111-369 (383)
72 3as5_A MAMA; tetratricopeptide 99.3 1.7E-10 5.8E-15 102.5 17.3 160 296-458 11-172 (186)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.6E-11 5.3E-16 119.5 11.4 238 161-428 27-310 (311)
74 1hz4_A MALT regulatory protein 99.2 2.9E-09 9.9E-14 106.7 26.8 258 201-458 23-321 (373)
75 2ond_A Cleavage stimulation fa 99.2 8.4E-10 2.9E-14 107.5 21.6 212 244-460 33-271 (308)
76 3as5_A MAMA; tetratricopeptide 99.2 5.1E-10 1.8E-14 99.4 18.0 168 262-432 8-180 (186)
77 4i17_A Hypothetical protein; T 99.2 3.1E-10 1.1E-14 105.1 17.1 188 261-459 6-209 (228)
78 4e6h_A MRNA 3'-END-processing 99.2 5.4E-09 1.8E-13 111.6 28.7 214 245-460 327-571 (679)
79 4i17_A Hypothetical protein; T 99.2 6.2E-10 2.1E-14 103.1 18.1 204 225-440 5-224 (228)
80 3q15_A PSP28, response regulat 99.2 4.9E-10 1.7E-14 112.6 18.0 221 237-458 111-364 (378)
81 4abn_A Tetratricopeptide repea 99.2 5.6E-10 1.9E-14 115.7 18.2 177 278-459 84-287 (474)
82 3q15_A PSP28, response regulat 99.2 5.1E-09 1.7E-13 105.2 23.5 225 200-425 109-365 (378)
83 1hz4_A MALT regulatory protein 99.1 6.9E-09 2.3E-13 103.9 23.0 259 169-427 22-324 (373)
84 1qqe_A Vesicular transport pro 99.1 2.2E-09 7.6E-14 103.6 16.8 187 270-456 45-266 (292)
85 3edt_B KLC 2, kinesin light ch 99.1 4.8E-10 1.6E-14 107.1 11.2 197 262-458 43-280 (283)
86 4gyw_A UDP-N-acetylglucosamine 99.0 1.5E-09 5.2E-14 117.2 14.3 165 259-427 6-176 (723)
87 1qqe_A Vesicular transport pro 99.0 5.6E-09 1.9E-13 100.7 16.7 166 264-429 79-273 (292)
88 3qky_A Outer membrane assembly 99.0 2.3E-08 7.9E-13 94.6 19.7 204 262-506 15-247 (261)
89 3mv2_B Coatomer subunit epsilo 99.0 2.4E-07 8.1E-12 87.9 24.9 163 292-459 99-282 (310)
90 3mv2_B Coatomer subunit epsilo 99.0 4.8E-08 1.6E-12 92.7 19.7 239 172-432 24-289 (310)
91 2fo7_A Synthetic consensus TPR 98.9 2.4E-08 8.2E-13 83.0 15.6 127 296-457 4-130 (136)
92 3edt_B KLC 2, kinesin light ch 98.9 1.5E-08 5E-13 96.6 16.1 162 264-425 87-281 (283)
93 2fo7_A Synthetic consensus TPR 98.9 2.1E-08 7.1E-13 83.4 14.6 96 365-460 2-99 (136)
94 4ga2_A E3 SUMO-protein ligase 98.9 1.5E-09 5.1E-14 93.2 6.6 141 301-445 5-149 (150)
95 3qky_A Outer membrane assembly 98.9 2.4E-08 8.2E-13 94.4 15.6 199 226-445 14-247 (261)
96 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.1E-07 3.7E-12 87.7 18.4 179 263-460 5-214 (225)
97 3qou_A Protein YBBN; thioredox 98.9 7.1E-08 2.4E-12 92.6 16.9 172 281-457 105-282 (287)
98 3rjv_A Putative SEL1 repeat pr 98.8 1.8E-07 6.1E-12 85.3 18.6 161 291-460 16-198 (212)
99 2pzi_A Probable serine/threoni 98.8 4.5E-08 1.5E-12 106.1 16.9 168 273-445 402-583 (681)
100 2uy1_A Cleavage stimulation fa 98.8 1.3E-06 4.5E-11 90.3 26.1 341 51-423 28-411 (493)
101 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4E-13 87.5 8.5 120 336-458 5-128 (150)
102 2pzi_A Probable serine/threoni 98.8 2.6E-07 8.7E-12 100.1 20.2 189 238-432 402-609 (681)
103 3urz_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 85.5 15.6 126 299-429 60-190 (208)
104 2ifu_A Gamma-SNAP; membrane fu 98.8 2.3E-07 7.8E-12 90.1 17.8 220 204-451 3-253 (307)
105 2vsy_A XCC0866; transferase, g 98.7 1.7E-07 5.8E-12 99.5 17.2 159 275-437 2-169 (568)
106 2vsy_A XCC0866; transferase, g 98.7 8.6E-08 3E-12 101.8 14.9 150 306-459 2-157 (568)
107 2r5s_A Uncharacterized protein 98.7 1.3E-07 4.5E-12 83.3 13.1 156 265-457 9-171 (176)
108 2vgx_A Chaperone SYCD; alterna 98.7 4.6E-08 1.6E-12 83.5 9.1 97 363-459 20-118 (148)
109 4gco_A Protein STI-1; structur 98.7 1.5E-07 5.1E-12 77.8 11.8 95 364-458 13-109 (126)
110 3gyz_A Chaperone protein IPGC; 98.7 7.2E-08 2.5E-12 82.3 10.1 100 360-459 31-133 (151)
111 3u3w_A Transcriptional activat 98.7 1.6E-06 5.4E-11 83.4 20.1 162 297-458 79-265 (293)
112 2r5s_A Uncharacterized protein 98.7 2.3E-07 7.7E-12 81.8 12.9 157 229-388 8-168 (176)
113 2qfc_A PLCR protein; TPR, HTH, 98.6 6.3E-07 2.2E-11 86.2 16.4 165 294-458 76-265 (293)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6E-07 2E-11 81.6 15.3 124 332-460 10-151 (213)
115 3dra_A Protein farnesyltransfe 98.6 4.4E-06 1.5E-10 80.0 21.5 219 205-429 46-292 (306)
116 3qou_A Protein YBBN; thioredox 98.6 1.2E-06 4.2E-11 83.9 17.6 157 263-423 118-282 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.6 1.2E-06 4.2E-11 79.5 16.8 143 267-429 11-154 (213)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 6.9E-07 2.3E-11 82.2 15.2 183 228-430 5-218 (225)
119 4gco_A Protein STI-1; structur 98.6 3.6E-07 1.2E-11 75.4 11.9 114 324-439 8-124 (126)
120 2xcb_A PCRH, regulatory protei 98.6 3E-07 1E-11 77.8 11.2 97 363-459 17-115 (142)
121 3urz_A Uncharacterized protein 98.6 1.3E-06 4.5E-11 79.2 15.6 134 266-404 58-198 (208)
122 1na0_A Designed protein CTPR3; 98.6 8.2E-07 2.8E-11 72.4 12.9 114 329-444 10-125 (125)
123 3rjv_A Putative SEL1 repeat pr 98.6 2.7E-06 9.3E-11 77.4 17.4 172 246-427 5-199 (212)
124 2uy1_A Cleavage stimulation fa 98.6 2.6E-06 9E-11 88.1 19.0 334 81-456 7-380 (493)
125 1a17_A Serine/threonine protei 98.6 1E-06 3.5E-11 76.2 13.7 126 331-458 16-145 (166)
126 3dra_A Protein farnesyltransfe 98.5 3.4E-05 1.2E-09 73.8 25.0 212 243-458 49-286 (306)
127 2vyi_A SGTA protein; chaperone 98.5 1.3E-06 4.4E-11 71.9 13.0 116 330-447 14-131 (131)
128 2e2e_A Formate-dependent nitri 98.5 7.6E-07 2.6E-11 78.3 12.0 119 339-459 21-144 (177)
129 3upv_A Heat shock protein STI1 98.5 7.2E-07 2.5E-11 73.5 11.1 96 364-459 4-101 (126)
130 2ifu_A Gamma-SNAP; membrane fu 98.5 4.7E-07 1.6E-11 87.8 11.1 197 239-457 3-222 (307)
131 2lni_A Stress-induced-phosphop 98.5 1.2E-06 4.3E-11 72.4 12.4 114 330-445 18-133 (133)
132 2c2l_A CHIP, carboxy terminus 98.5 1.9E-07 6.6E-12 89.2 8.2 189 262-458 4-198 (281)
133 3u3w_A Transcriptional activat 98.5 2.2E-05 7.4E-10 75.3 22.1 158 268-425 81-266 (293)
134 1p5q_A FKBP52, FK506-binding p 98.4 1.4E-06 4.7E-11 85.6 12.3 161 276-458 127-293 (336)
135 2qfc_A PLCR protein; TPR, HTH, 98.4 4.1E-06 1.4E-10 80.5 15.1 162 264-425 77-266 (293)
136 2kck_A TPR repeat; tetratricop 98.4 1.5E-06 5.1E-11 69.3 9.9 98 363-460 5-107 (112)
137 3gyz_A Chaperone protein IPGC; 98.4 3.4E-06 1.2E-10 71.8 11.8 105 324-430 31-138 (151)
138 3q49_B STIP1 homology and U bo 98.4 3E-06 1E-10 70.7 11.4 98 362-459 7-106 (137)
139 3gw4_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 75.9 12.2 151 274-424 4-175 (203)
140 4f3v_A ESX-1 secretion system 98.4 5E-06 1.7E-10 77.8 13.4 135 297-436 106-247 (282)
141 1elw_A TPR1-domain of HOP; HOP 98.3 7.3E-06 2.5E-10 65.8 12.9 93 366-458 6-100 (118)
142 4f3v_A ESX-1 secretion system 98.3 5.5E-06 1.9E-10 77.5 13.4 181 274-459 18-237 (282)
143 1hxi_A PEX5, peroxisome target 98.3 1.5E-06 5.2E-11 71.0 8.6 94 366-459 19-114 (121)
144 1elw_A TPR1-domain of HOP; HOP 98.3 9.5E-06 3.2E-10 65.1 13.4 109 329-439 5-115 (118)
145 3sz7_A HSC70 cochaperone (SGT) 98.3 2.4E-06 8.1E-11 74.1 10.2 95 364-458 11-107 (164)
146 2e2e_A Formate-dependent nitri 98.3 4.7E-06 1.6E-10 73.2 12.2 127 304-433 21-152 (177)
147 1wao_1 Serine/threonine protei 98.3 7.6E-06 2.6E-10 84.4 15.4 114 303-420 16-134 (477)
148 1na0_A Designed protein CTPR3; 98.3 4.6E-06 1.6E-10 67.8 11.1 96 364-459 9-106 (125)
149 2lni_A Stress-induced-phosphop 98.3 4.2E-06 1.4E-10 69.1 10.6 99 361-459 13-113 (133)
150 1wao_1 Serine/threonine protei 98.3 3.7E-06 1.3E-10 86.7 12.4 118 336-455 14-135 (477)
151 3gw4_A Uncharacterized protein 98.3 5.1E-06 1.7E-10 74.5 12.0 83 172-254 3-93 (203)
152 2vgx_A Chaperone SYCD; alterna 98.3 1.7E-06 5.8E-11 73.6 8.1 102 330-433 23-126 (148)
153 2dba_A Smooth muscle cell asso 98.3 6.1E-06 2.1E-10 69.6 11.7 96 363-458 27-127 (148)
154 4gcn_A Protein STI-1; structur 98.3 2.5E-06 8.6E-11 70.4 8.9 95 364-458 8-111 (127)
155 1a17_A Serine/threonine protei 98.3 1.5E-05 5E-10 68.7 14.0 129 293-424 13-145 (166)
156 2fbn_A 70 kDa peptidylprolyl i 98.3 6.3E-06 2.2E-10 73.9 11.4 171 268-459 10-186 (198)
157 2vyi_A SGTA protein; chaperone 98.2 8.2E-06 2.8E-10 66.9 11.3 97 363-459 11-109 (131)
158 3q7a_A Farnesyltransferase alp 98.2 7.3E-05 2.5E-09 72.3 19.3 228 200-459 62-331 (349)
159 2xcb_A PCRH, regulatory protei 98.2 6.4E-06 2.2E-10 69.4 10.3 105 330-436 20-126 (142)
160 3rkv_A Putative peptidylprolyl 98.2 7.5E-06 2.5E-10 70.7 10.9 94 366-459 13-126 (162)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.4E-05 4.8E-10 69.1 12.6 107 329-437 12-120 (164)
162 3q7a_A Farnesyltransferase alp 98.2 0.00064 2.2E-08 65.7 25.1 225 170-434 63-341 (349)
163 2c2l_A CHIP, carboxy terminus 98.2 1.1E-05 3.9E-10 76.8 12.7 182 132-321 6-198 (281)
164 2dba_A Smooth muscle cell asso 98.2 2.3E-05 7.8E-10 66.0 13.4 107 331-440 31-143 (148)
165 3upv_A Heat shock protein STI1 98.2 1.4E-05 4.9E-10 65.5 11.7 108 330-439 6-121 (126)
166 1elr_A TPR2A-domain of HOP; HO 98.1 1.8E-05 6.2E-10 64.8 11.0 96 364-459 4-108 (131)
167 2hr2_A Hypothetical protein; a 98.1 8.3E-06 2.8E-10 68.9 8.7 93 367-459 14-131 (159)
168 2xev_A YBGF; tetratricopeptide 98.1 9.4E-06 3.2E-10 66.7 8.6 89 370-458 8-104 (129)
169 3q49_B STIP1 homology and U bo 98.1 2.1E-05 7.1E-10 65.4 10.7 100 327-428 8-109 (137)
170 3dss_A Geranylgeranyl transfer 98.1 0.00043 1.5E-08 66.6 21.1 230 204-440 41-319 (331)
171 2kck_A TPR repeat; tetratricop 98.1 2.1E-05 7.3E-10 62.3 10.3 99 330-430 8-111 (112)
172 1p5q_A FKBP52, FK506-binding p 98.1 2E-05 7E-10 77.2 11.8 97 363-459 146-259 (336)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.7E-05 9.4E-10 79.8 12.9 160 277-458 249-414 (457)
174 3k9i_A BH0479 protein; putativ 98.1 3E-06 1E-10 68.7 4.6 82 377-458 3-89 (117)
175 2fbn_A 70 kDa peptidylprolyl i 98.0 5.3E-05 1.8E-09 67.7 13.2 118 340-459 16-151 (198)
176 1elr_A TPR2A-domain of HOP; HO 98.0 1.7E-05 5.9E-10 65.0 9.1 107 331-440 7-122 (131)
177 1hxi_A PEX5, peroxisome target 98.0 2.7E-05 9.1E-10 63.4 9.4 97 332-430 21-119 (121)
178 2xev_A YBGF; tetratricopeptide 98.0 7.4E-05 2.5E-09 61.2 12.2 99 334-434 8-114 (129)
179 4b4t_Q 26S proteasome regulato 98.0 5.5E-05 1.9E-09 76.9 13.8 164 295-458 57-244 (434)
180 3dss_A Geranylgeranyl transfer 98.0 0.00068 2.3E-08 65.2 20.4 217 239-459 41-304 (331)
181 3n71_A Histone lysine methyltr 98.0 5.5E-05 1.9E-09 77.5 12.9 124 337-460 318-465 (490)
182 3ro3_A PINS homolog, G-protein 98.0 3.8E-05 1.3E-09 65.5 10.0 93 366-458 51-157 (164)
183 1ihg_A Cyclophilin 40; ppiase 97.9 4E-05 1.4E-09 76.1 11.1 138 293-451 223-362 (370)
184 4gcn_A Protein STI-1; structur 97.9 0.00012 4.2E-09 60.0 12.0 31 398-428 85-115 (127)
185 2if4_A ATFKBP42; FKBP-like, al 97.9 3.3E-05 1.1E-09 75.7 9.7 148 292-459 178-328 (338)
186 3ro3_A PINS homolog, G-protein 97.9 4.6E-05 1.6E-09 65.0 9.4 131 295-425 11-158 (164)
187 2if4_A ATFKBP42; FKBP-like, al 97.9 5.3E-05 1.8E-09 74.2 10.5 150 262-430 179-333 (338)
188 2l6j_A TPR repeat-containing p 97.9 3.5E-05 1.2E-09 61.2 7.5 92 363-454 3-102 (111)
189 3k9i_A BH0479 protein; putativ 97.8 1.9E-05 6.4E-10 63.9 5.5 92 341-432 3-97 (117)
190 2hr2_A Hypothetical protein; a 97.8 4.2E-05 1.4E-09 64.6 7.6 70 366-435 59-141 (159)
191 1ihg_A Cyclophilin 40; ppiase 97.8 9.9E-05 3.4E-09 73.2 11.6 65 395-459 272-336 (370)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00018 6.2E-09 73.7 13.7 96 364-459 268-380 (457)
193 4b4t_Q 26S proteasome regulato 97.8 0.00024 8.2E-09 72.1 14.4 158 301-458 12-203 (434)
194 1dce_A Protein (RAB geranylger 97.8 0.00085 2.9E-08 70.4 18.8 168 278-448 45-244 (567)
195 3rkv_A Putative peptidylprolyl 97.8 7.6E-05 2.6E-09 64.2 9.0 119 293-430 11-131 (162)
196 1na3_A Designed protein CTPR2; 97.8 8.2E-05 2.8E-09 56.5 8.2 82 363-444 8-91 (91)
197 3ma5_A Tetratricopeptide repea 97.7 0.00011 3.8E-09 57.3 8.5 65 395-459 6-70 (100)
198 2kat_A Uncharacterized protein 97.6 0.00012 4.2E-09 58.6 7.1 76 383-458 4-81 (115)
199 3n71_A Histone lysine methyltr 97.6 0.00038 1.3E-08 71.3 11.9 114 373-505 318-449 (490)
200 1zu2_A Mitochondrial import re 97.6 3.4E-05 1.1E-09 65.0 3.0 84 376-459 14-120 (158)
201 3qwp_A SET and MYND domain-con 97.5 0.00045 1.6E-08 69.6 11.5 116 371-505 294-427 (429)
202 3bee_A Putative YFRE protein; 97.4 0.00061 2.1E-08 52.1 8.2 68 393-460 3-73 (93)
203 1zu2_A Mitochondrial import re 97.4 0.00017 5.9E-09 60.7 5.4 109 342-459 16-147 (158)
204 2l6j_A TPR repeat-containing p 97.3 0.00051 1.8E-08 54.2 7.3 66 394-459 2-67 (111)
205 1klx_A Cysteine rich protein B 97.3 0.0026 9E-08 52.7 11.5 89 370-460 31-127 (138)
206 1klx_A Cysteine rich protein B 97.2 0.002 7E-08 53.4 10.1 112 307-427 9-128 (138)
207 3qww_A SET and MYND domain-con 97.1 0.001 3.4E-08 67.0 8.7 83 376-458 310-410 (433)
208 1na3_A Designed protein CTPR2; 97.1 0.0012 4E-08 49.8 7.2 65 395-459 8-72 (91)
209 2kat_A Uncharacterized protein 97.1 0.0015 5.3E-08 52.0 7.9 81 347-429 4-86 (115)
210 1dce_A Protein (RAB geranylger 97.1 0.012 4E-07 61.8 16.2 149 306-458 42-220 (567)
211 3lvg_A Clathrin heavy chain 1; 97.0 0.0013 4.3E-08 65.0 7.4 139 6-149 54-218 (624)
212 3qwp_A SET and MYND domain-con 97.0 0.0056 1.9E-07 61.6 12.6 101 335-435 294-415 (429)
213 3qww_A SET and MYND domain-con 97.0 0.0033 1.1E-07 63.2 10.7 94 340-433 310-424 (433)
214 2kc7_A BFR218_protein; tetratr 96.9 0.0024 8E-08 49.2 7.3 64 370-433 6-72 (99)
215 3ly7_A Transcriptional activat 96.9 0.01 3.5E-07 57.3 12.7 137 291-429 192-343 (372)
216 1pc2_A Mitochondria fission pr 96.9 0.0053 1.8E-07 51.0 9.1 65 394-458 30-99 (152)
217 2kc7_A BFR218_protein; tetratr 96.8 0.0054 1.8E-07 47.0 8.6 87 334-430 6-95 (99)
218 1wy6_A Hypothetical protein ST 96.8 0.099 3.4E-06 41.7 15.0 140 304-462 18-157 (172)
219 3ma5_A Tetratricopeptide repea 96.7 0.0054 1.8E-07 47.4 7.7 63 292-355 6-68 (100)
220 3mkq_A Coatomer beta'-subunit; 96.6 0.16 5.3E-06 55.9 21.9 152 107-285 607-759 (814)
221 3lvg_A Clathrin heavy chain 1; 96.5 8.1E-05 2.8E-09 73.2 -4.9 259 36-314 53-325 (624)
222 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 56.5 19.7 48 271-320 661-708 (814)
223 3ly7_A Transcriptional activat 96.3 0.039 1.3E-06 53.3 12.3 133 324-460 190-340 (372)
224 3u64_A Protein TP_0956; tetrat 96.2 0.014 4.9E-07 54.0 8.3 87 380-466 179-276 (301)
225 3bee_A Putative YFRE protein; 96.1 0.034 1.2E-06 42.1 8.8 78 361-439 3-85 (93)
226 1pc2_A Mitochondria fission pr 95.9 0.046 1.6E-06 45.4 9.4 85 344-430 14-105 (152)
227 3mkq_B Coatomer subunit alpha; 95.9 0.3 1E-05 41.6 14.3 129 270-422 13-141 (177)
228 2v5f_A Prolyl 4-hydroxylase su 95.8 0.05 1.7E-06 42.2 9.0 73 363-435 4-85 (104)
229 1nzn_A CGI-135 protein, fissio 95.6 0.079 2.7E-06 42.3 9.0 85 343-429 16-107 (126)
230 3mkq_B Coatomer subunit alpha; 95.3 1.1 3.8E-05 38.1 15.7 103 169-288 13-115 (177)
231 1qsa_A Protein (soluble lytic 95.2 3.6 0.00012 43.0 28.5 115 307-424 228-347 (618)
232 3ltj_A Alpharep-4; protein eng 94.6 1.5 5E-05 38.3 16.0 155 65-220 25-179 (201)
233 3ltm_A Alpha-REP4; protein eng 94.5 1.4 5E-05 38.7 15.8 171 65-239 30-200 (211)
234 1y8m_A FIS1; mitochondria, unk 94.5 1.1 3.7E-05 36.4 12.9 66 393-458 36-105 (144)
235 3u64_A Protein TP_0956; tetrat 94.4 0.065 2.2E-06 49.6 6.4 81 345-428 180-272 (301)
236 3ltm_A Alpha-REP4; protein eng 94.1 2.9 9.8E-05 36.8 17.5 179 88-274 22-200 (211)
237 3ltj_A Alpharep-4; protein eng 94.0 1.1 3.8E-05 39.2 13.7 179 27-205 18-196 (201)
238 2v5f_A Prolyl 4-hydroxylase su 93.4 0.26 8.9E-06 38.0 7.5 65 395-459 4-75 (104)
239 1nzn_A CGI-135 protein, fissio 92.8 0.73 2.5E-05 36.7 9.1 87 306-395 14-106 (126)
240 4gns_B Protein CSD3, chitin bi 92.7 0.88 3E-05 48.6 12.4 53 404-456 345-397 (754)
241 1wy6_A Hypothetical protein ST 91.5 4.5 0.00015 32.4 14.8 62 295-357 93-154 (172)
242 3o48_A Mitochondria fission 1 90.6 0.87 3E-05 36.4 7.3 68 362-429 38-111 (134)
243 4ady_A RPN2, 26S proteasome re 90.4 21 0.00072 39.0 20.0 150 202-356 500-657 (963)
244 4h7y_A Dual specificity protei 89.0 1.9 6.5E-05 35.3 8.1 50 410-459 74-123 (161)
245 2uwj_G Type III export protein 86.7 8.3 0.00028 28.8 10.3 87 242-333 21-107 (115)
246 4h7y_A Dual specificity protei 86.4 7.9 0.00027 31.7 10.3 106 189-327 10-128 (161)
247 2p58_C Putative type III secre 86.2 8.9 0.0003 28.7 9.5 87 242-333 22-108 (116)
248 1oyz_A Hypothetical protein YI 85.1 23 0.00078 32.4 18.0 220 30-256 30-263 (280)
249 3o48_A Mitochondria fission 1 84.4 14 0.00048 29.5 10.8 73 323-396 35-111 (134)
250 2ff4_A Probable regulatory pro 83.8 2.5 8.6E-05 41.5 7.8 67 400-466 175-246 (388)
251 3lpz_A GET4 (YOR164C homolog); 83.8 30 0.001 32.7 22.6 182 138-356 20-215 (336)
252 1y8m_A FIS1; mitochondria, unk 83.0 17 0.00059 29.4 12.1 70 361-430 36-111 (144)
253 2wpv_A GET4, UPF0363 protein Y 82.6 32 0.0011 32.2 21.6 181 140-357 23-217 (312)
254 3txn_A 26S proteasome regulato 82.3 38 0.0013 32.9 15.6 57 334-390 105-165 (394)
255 4ady_A RPN2, 26S proteasome re 82.1 41 0.0014 36.8 16.7 146 239-390 502-655 (963)
256 1v54_E Cytochrome C oxidase po 81.4 7 0.00024 29.4 7.3 62 309-372 26-87 (109)
257 4b4t_P 26S proteasome regulato 81.1 46 0.0016 33.1 16.2 184 205-390 29-244 (445)
258 4gns_B Protein CSD3, chitin bi 79.9 6.5 0.00022 42.0 9.6 46 274-319 349-397 (754)
259 2ff4_A Probable regulatory pro 79.5 11 0.00036 37.0 10.6 67 299-366 177-247 (388)
260 3ffl_A Anaphase-promoting comp 79.1 8.2 0.00028 32.2 7.9 113 267-393 25-151 (167)
261 3lpz_A GET4 (YOR164C homolog); 78.9 44 0.0015 31.6 22.4 166 266-458 39-215 (336)
262 4fhn_B Nucleoporin NUP120; pro 77.4 51 0.0017 37.5 16.7 22 267-288 847-868 (1139)
263 3ffl_A Anaphase-promoting comp 76.3 16 0.00054 30.5 8.9 114 331-456 23-148 (167)
264 1oyz_A Hypothetical protein YI 74.6 50 0.0017 30.0 18.6 216 62-287 31-259 (280)
265 4fhn_B Nucleoporin NUP120; pro 74.5 23 0.0008 40.3 12.9 122 333-460 817-968 (1139)
266 1v54_E Cytochrome C oxidase po 74.3 25 0.00087 26.4 9.1 48 389-436 38-85 (109)
267 2p58_C Putative type III secre 73.9 26 0.00088 26.3 9.3 49 77-127 49-97 (116)
268 1zbp_A Hypothetical protein VP 73.8 52 0.0018 29.9 12.3 49 340-390 9-57 (273)
269 4b4t_P 26S proteasome regulato 73.0 77 0.0026 31.4 20.4 142 175-320 30-204 (445)
270 2y69_E Cytochrome C oxidase su 72.5 15 0.00052 29.3 7.3 62 309-372 69-130 (152)
271 1qsa_A Protein (soluble lytic 72.2 97 0.0033 32.2 29.1 170 276-458 228-409 (618)
272 2uwj_G Type III export protein 72.2 24 0.00083 26.4 7.9 49 77-127 48-96 (115)
273 3eiq_C Programmed cell death p 70.4 77 0.0026 30.3 15.8 66 164-229 220-290 (358)
274 2qx5_A Nucleoporin NIC96; mRNA 68.8 49 0.0017 34.7 12.7 40 101-141 155-197 (661)
275 3mv2_A Coatomer subunit alpha; 67.3 78 0.0027 29.6 12.2 55 391-459 200-256 (325)
276 2zu6_B Programmed cell death p 64.7 57 0.0019 30.4 11.1 62 165-226 170-236 (307)
277 3esl_A Checkpoint serine/threo 64.3 54 0.0018 28.3 9.9 102 382-510 62-169 (202)
278 2nsz_A Programmed cell death p 64.0 52 0.0018 26.0 9.4 63 164-226 10-77 (129)
279 1zbp_A Hypothetical protein VP 64.0 11 0.00038 34.2 5.8 58 372-429 5-64 (273)
280 2y69_E Cytochrome C oxidase su 62.4 58 0.002 26.0 9.1 49 388-436 80-128 (152)
281 2wpv_A GET4, UPF0363 protein Y 61.9 1E+02 0.0035 28.7 22.9 168 265-458 36-216 (312)
282 3txn_A 26S proteasome regulato 61.2 1.2E+02 0.0042 29.3 26.3 222 197-461 104-345 (394)
283 4b4t_R RPN7, 26S proteasome re 59.5 55 0.0019 32.3 10.7 58 163-220 133-196 (429)
284 3kea_A K1L; tropism, ANK repea 58.0 1.1E+02 0.0038 27.8 13.5 142 44-186 35-183 (285)
285 4b4t_R RPN7, 26S proteasome re 57.3 55 0.0019 32.3 10.3 55 264-318 133-193 (429)
286 3kea_A K1L; tropism, ANK repea 55.2 95 0.0032 28.3 11.1 173 13-186 35-217 (285)
287 2nsz_A Programmed cell death p 53.0 54 0.0019 25.9 7.6 65 265-329 10-79 (129)
288 2ion_A PDCD4, programmed cell 52.8 59 0.002 26.6 8.0 63 164-226 12-79 (152)
289 4b4t_S RPN3, 26S proteasome re 52.7 73 0.0025 32.1 10.0 59 69-127 232-298 (523)
290 3eu9_A Huntingtin-interacting 51.5 1.2E+02 0.004 26.2 13.8 51 201-255 183-235 (240)
291 1n11_A Ankyrin; clathrin, BAND 51.5 1.8E+02 0.0061 28.3 17.0 15 375-389 352-366 (437)
292 1wdy_A 2-5A-dependent ribonucl 51.1 1.3E+02 0.0046 26.7 16.5 53 41-93 6-61 (285)
293 4a1g_A Mitotic checkpoint seri 50.2 1E+02 0.0034 25.2 8.8 46 415-460 84-131 (152)
294 3ljn_A Hypothetical protein; a 49.6 1.4E+02 0.0047 28.2 11.7 49 169-218 58-107 (364)
295 2l0z_A Glycoprotein G2; zinc-b 48.4 6.2 0.00021 23.6 0.9 15 585-599 14-29 (42)
296 3hra_A Ankyrin repeat family p 47.9 1.2E+02 0.0042 25.3 10.5 17 171-187 12-28 (201)
297 2zu6_B Programmed cell death p 47.0 1.8E+02 0.0062 27.0 14.0 61 296-357 169-231 (307)
298 1wdy_A 2-5A-dependent ribonucl 46.4 1.6E+02 0.0054 26.2 16.9 82 11-93 7-94 (285)
299 2wvi_A Mitotic checkpoint seri 45.9 1.2E+02 0.0042 25.1 8.8 47 415-461 79-127 (164)
300 2r9g_A AAA ATPase, central reg 45.9 1.4E+02 0.0049 25.6 9.4 65 194-259 13-85 (204)
301 2k0q_A Putative uncharacterize 44.8 7.8 0.00027 26.5 1.1 21 576-596 8-28 (74)
302 4gq2_M Nucleoporin NUP120; bet 44.1 1.9E+02 0.0065 32.0 12.8 90 334-429 816-931 (950)
303 2ion_A PDCD4, programmed cell 43.1 54 0.0019 26.9 6.3 64 265-328 12-80 (152)
304 3eiq_C Programmed cell death p 42.6 2.3E+02 0.0079 27.0 14.7 25 133-157 57-81 (358)
305 2d2s_A Exocyst complex compone 42.5 1.4E+02 0.0047 26.5 9.4 23 198-220 24-46 (235)
306 3ctd_A Putative ATPase, AAA fa 35.2 2.1E+02 0.0073 24.7 8.8 69 191-259 31-107 (213)
307 2qx5_A Nucleoporin NIC96; mRNA 34.5 4.2E+02 0.014 27.7 19.8 21 375-395 549-569 (661)
308 1ug3_A EIF4GI, eukaryotic prot 34.1 1.9E+02 0.0064 27.3 9.5 91 165-255 15-113 (339)
309 3ygs_P Procaspase 9; apoptosis 33.1 37 0.0013 25.3 3.5 36 83-118 52-87 (97)
310 2d2s_A Exocyst complex compone 33.0 1.6E+02 0.0054 26.2 8.1 86 300-389 25-116 (235)
311 4b4t_S RPN3, 26S proteasome re 32.8 1.3E+02 0.0045 30.3 8.2 59 330-390 233-296 (523)
312 1qc6_A EVH1 domain from ENA/VA 31.4 16 0.00054 29.2 1.2 40 548-595 44-87 (130)
313 3e3v_A Regulatory protein RECX 31.4 2.2E+02 0.0075 23.8 8.5 30 365-394 137-167 (177)
314 3bge_A Predicted ATPase; struc 30.9 2E+02 0.0069 24.6 7.8 45 197-241 9-56 (201)
315 3eu9_A Huntingtin-interacting 30.6 2.5E+02 0.0087 23.9 15.3 114 169-290 114-235 (240)
316 3bqo_A Telomeric repeat-bindin 30.5 2.6E+02 0.0088 24.0 8.8 52 380-431 94-152 (211)
317 3esl_A Checkpoint serine/threo 28.8 2.8E+02 0.0096 23.8 10.4 55 206-260 93-148 (202)
318 2fe3_A Peroxide operon regulat 28.0 1.2E+02 0.004 24.4 6.0 44 197-240 26-69 (145)
319 2hgo_A CASSIICOLIN; toxin, dis 27.7 12 0.0004 19.3 -0.1 13 588-600 8-22 (27)
320 3hra_A Ankyrin repeat family p 27.4 2.6E+02 0.009 23.1 12.8 16 171-186 113-128 (201)
321 3mkr_B Coatomer subunit alpha; 26.7 2E+02 0.0068 26.8 7.8 56 391-460 191-248 (320)
322 2xig_A Ferric uptake regulatio 25.6 1.7E+02 0.0059 23.6 6.6 43 197-239 31-73 (150)
323 3ygs_P Procaspase 9; apoptosis 24.8 97 0.0033 23.0 4.5 37 175-211 51-87 (97)
324 4ets_A Ferric uptake regulatio 22.4 1.5E+02 0.005 24.5 5.7 57 220-277 26-84 (162)
325 2p1h_A APAF-1, apoptotic prote 22.1 78 0.0027 23.2 3.5 36 81-116 49-84 (94)
326 2p1h_A APAF-1, apoptotic prote 22.0 1.4E+02 0.0048 21.7 4.9 38 174-211 49-86 (94)
327 2yru_A Steroid receptor RNA ac 21.6 1.1E+02 0.0037 23.8 4.3 43 214-256 48-90 (118)
328 1te4_A Conserved protein MTH18 21.5 81 0.0028 24.6 3.8 19 65-83 53-71 (131)
329 3i5p_A Nucleoporin NUP170; hel 21.1 5.1E+02 0.017 26.1 10.2 68 393-460 175-247 (525)
330 1ya0_A SMG-7 transcript varian 21.1 2.2E+02 0.0076 28.6 7.6 43 407-449 163-205 (497)
331 4aez_C MAD3, mitotic spindle c 21.1 2.9E+02 0.01 24.1 7.4 47 414-460 132-180 (223)
332 3ljn_A Hypothetical protein; a 20.3 5.2E+02 0.018 23.9 13.2 51 44-95 24-77 (364)
333 4a1g_A Mitotic checkpoint seri 20.2 3.5E+02 0.012 22.0 7.8 52 210-261 83-135 (152)
334 2b7e_A PRE-mRNA processing pro 20.2 1E+02 0.0034 20.5 3.2 30 208-237 2-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-42 Score=369.37 Aligned_cols=453 Identities=9% Similarity=-0.011 Sum_probs=393.8
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCC--CCCcchHHHHHHH
Q 007517 2 PERNVVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP--EKDVVAQTNMVLG 77 (600)
Q Consensus 2 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~li~~ 77 (600)
|.+++..|+.++..|.+.|++++|+.+|++|. .|+..++..++.+|.+.|++++|..+|+.+. .++..+++.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 45788899999999999999999999999987 5788899999999999999999999999994 6789999999999
Q ss_pred HHhcCChHHHHHHHhhCCCC-------------------CcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcc-hHHH
Q 007517 78 YCQDGRVDEGREIFDEMPKK-------------------NVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEV-SWTA 135 (600)
Q Consensus 78 ~~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~-t~~~ 135 (600)
|.+.|++++|.++|+++... ++.+|+.++.+|.+.|++++|+++|++|.+ |+.. .+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999965433 378999999999999999999999999987 6544 4444
Q ss_pred HHHHHhcCCChHHHHH--H-HhhCCCC----CccchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcC
Q 007517 136 MLMGYTQCGRIQDAWE--L-FKAMPMK----SVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKG 206 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~--~-~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g 206 (600)
+...+...+..+.+.. + +..+... ...+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 5444433332222111 0 1112222 223456668889999999999999999987 79999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+
T Consensus 320 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999875 3478889999999999999999999999999764 6678899999999999999999999999
Q ss_pred hcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC
Q 007517 287 NFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK 363 (600)
Q Consensus 287 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~ 363 (600)
++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..+..+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD 474 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 875 3578899999999999999999999999999863 4577899999999999999999999999998753 457
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 899999999999999999999999988 45787 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.+|...|++++|.++++++.+.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-38 Score=338.56 Aligned_cols=437 Identities=9% Similarity=-0.016 Sum_probs=376.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCCCC--------------
Q 007517 3 ERNVVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK-------------- 66 (600)
Q Consensus 3 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-------------- 66 (600)
.||..+|+.++..|.+.|++++|+.+|+.+. ++++.+++.++.+|.++|++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 193 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQD 193 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCC
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccc
Confidence 3677899999999999999999999999995 788999999999999999999999999965543
Q ss_pred -----CcchHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHH---HhhcCC----CCcc
Q 007517 67 -----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKK---NVISWTTMISGYVNNNRIDVARKL---FEVMPE----KNEV 131 (600)
Q Consensus 67 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~---~~~m~~----p~~~ 131 (600)
+..+|+.++.+|.+.|++++|.++|++|.+. +..+|..+...+...+..+.+... +..+.. ++..
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 3789999999999999999999999999753 334555555544443332222111 222222 3345
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC--CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcC
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP--MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKG 206 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 206 (600)
+|+.++..|.+.|++++|.++|+.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence 67777888999999999999999998 48889999999999999999999999999873 37889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhh
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFD 286 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 286 (600)
++++|..+|+++.+.. +.+..++..+...+.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+
T Consensus 354 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 354 EKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998653 4567889999999999999999999999999865 4568899999999999999999999999
Q ss_pred hcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CC
Q 007517 287 NFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY---LV 360 (600)
Q Consensus 287 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~ 360 (600)
++.. .+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...+.+.|++++|.++|+++.+.. +.
T Consensus 432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 8753 478999999999999999999999999998753 4467899999999999999999999999987642 45
Q ss_pred CCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 361 EPK--TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 361 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+..+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 677 789999999999999999999999987 3334 789999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 007517 437 SNIYAS 442 (600)
Q Consensus 437 ~~~~~~ 442 (600)
+++|..
T Consensus 591 ~~~~~~ 596 (597)
T 2xpi_A 591 KRALEE 596 (597)
T ss_dssp HHTTC-
T ss_pred HHHHhc
Confidence 988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.6e-28 Score=253.25 Aligned_cols=198 Identities=13% Similarity=0.213 Sum_probs=170.3
Q ss_pred HHHHHHHhcccC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---------chH
Q 007517 179 KARVVFDQMREK-----DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---------SLD 244 (600)
Q Consensus 179 ~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~ 244 (600)
.+..+++++.++ ....++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555533 234588899999999999999999999999999999999999999998654 478
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+||+||.+|++.|+.++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999864 799999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 321 SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
+.|+.||..||++||.+|++.|++++|.++|++|.+. ++.|+..+|+.+++.+...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999886 8899999999999988753
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=234.45 Aligned_cols=337 Identities=12% Similarity=0.095 Sum_probs=212.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcC
Q 007517 102 WTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNG 175 (600)
Q Consensus 102 ~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g 175 (600)
+..+...+.+.|++++|...++...+ | +..++..+..++...|++++|...|+.+. +.+...+..+...|.+.|
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 115 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC
Confidence 33334444444444444444444433 2 23344444444444444444444444443 222334444555555555
Q ss_pred CHHHHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHH
Q 007517 176 EVQKARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQ 252 (600)
Q Consensus 176 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 252 (600)
++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.... +-+..++..+...+...|++++|...++.
T Consensus 116 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554432 2 23344445555555555555555555555432 11234455555555555555555555555
Q ss_pred HHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 007517 253 LVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFA---SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DD 328 (600)
Q Consensus 253 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 328 (600)
+.+.. +.+...+..+...|...|++++|...|++.. ..+..+|..+...|.+.|++++|++.|+++.+. .| +.
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 271 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFP 271 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCH
Confidence 55543 3345566667777777777777777776543 235677888888888888888888888888775 34 35
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
.++..+..++...|++++|.+.|+++.+. .+++...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 57777778888888888888888888764 2556778888888888888888888888877 3344 467788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++++|...++++++++|+++..|..++.++...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 88888888888888888888888888888888777665
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.6e-25 Score=226.03 Aligned_cols=348 Identities=11% Similarity=0.061 Sum_probs=305.1
Q ss_pred HHHHHHhCCChHHHHHHHhhcCC--CCc-chHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHH
Q 007517 105 MISGYVNNNRIDVARKLFEVMPE--KNE-VSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQ 178 (600)
Q Consensus 105 li~~~~~~g~~~~A~~~~~~m~~--p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 178 (600)
+...+.+.|++++|++.+..+.+ |+. ..+..+...+...|++++|...++... +.+..++..+...|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34567788999999999988876 664 455667777889999999999998887 566778999999999999999
Q ss_pred HHHHHHHhccc--C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 179 KARVVFDQMRE--K-DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 179 ~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
+|...|+++.. | +..+|..+..++.+.|++++|+..|+++.+. .|+.. .+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999864 3 5668999999999999999999999999885 45544 55667778888999999999999999
Q ss_pred HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 007517 255 RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVT 330 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t 330 (600)
+.. +.+..++..+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++.... .|+ ..+
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 239 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVV 239 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHH
Confidence 875 55678899999999999999999999998754 46788999999999999999999999999874 454 678
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~ 408 (600)
+..+..++...|++++|.+.|+.+.+.. +.+...|..++..|.+.|++++|.+.++++ ..+++..+|..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8889999999999999999999998742 345789999999999999999999999988 224578899999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.|++++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.6e-27 Score=243.18 Aligned_cols=200 Identities=13% Similarity=0.122 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHcCCccCc-hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC---------H
Q 007517 209 LEVIDLFTLMQKEGVRVNF-PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE---------L 278 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 278 (600)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455677788877776543 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 279 VKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 279 ~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
+.|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999864 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHc
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM---PFEPDAIIWGSLLGACRTH 409 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~ 409 (600)
.+. |+.||..+|++|+++|++.|++++|.+++++| +..|+..||+.++..+...
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 985 89999999999999999999999999999999 7899999999999988754
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.2e-22 Score=214.23 Aligned_cols=386 Identities=10% Similarity=-0.009 Sum_probs=313.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CC-cchHHHHHHHHhcC
Q 007517 69 VAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNNRIDVARKLFEVMPE--KN-EVSWTAMLMGYTQC 143 (600)
Q Consensus 69 ~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~-~~t~~~ll~~~~~~ 143 (600)
..+..+...+.+.|++++|...|+++.+ |+..+|..+..+|.+.|++++|+..|+++.+ |+ ..++..+..++...
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4566777889999999999999999864 8888999999999999999999999999887 54 46888999999999
Q ss_pred CChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHh----------------------------------
Q 007517 144 GRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQ---------------------------------- 186 (600)
Q Consensus 144 g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~---------------------------------- 186 (600)
|++++|...|+.+. +.+......++..+.+......+.+.+..
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999887 33444444455444443322222222211
Q ss_pred ----cc---------cC-ChhhHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCc--------cCchhHhhHHHH
Q 007517 187 ----MR---------EK-DDATWSGMIKVYER---KGYELEVIDLFTLMQK-----EGVR--------VNFPSLISVLSV 236 (600)
Q Consensus 187 ----~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ll~~ 236 (600)
.. .+ +...+......+.. .|++++|+..|+++.. .... .+..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00 01 13344444444554 8999999999999987 3112 234567778888
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 313 (600)
+...|+++.|...+..+.+.... ..++..+...|...|++++|...|+.+.. .+..+|..+...|...|++++|+
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 89999999999999999987644 88889999999999999999999998754 46788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 007517 314 KVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--- 390 (600)
Q Consensus 314 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--- 390 (600)
..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998863 3345678888899999999999999999998753 446788999999999999999999999887
Q ss_pred -CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 391 -PFEPD----AIIWGSLLGACRT---HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 391 -~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+-.|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22233 4489999999999 999999999999999999999999999999999999999999999998864
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.8e-22 Score=206.77 Aligned_cols=328 Identities=14% Similarity=0.110 Sum_probs=227.0
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHhhcCC--C-CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHH
Q 007517 99 VISWTTMISGYVNNNRIDVARKLFEVMPE--K-NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLG 172 (600)
Q Consensus 99 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~ 172 (600)
+.+|..+...+.+.|++++|+.+|+++.+ | +..++..+..++...|++++|...++.+. +.+..++..+...|.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 34455555666666666666666665544 2 34445555555555555555555555554 333444555555666
Q ss_pred hcCCHHHHHHHHHhcccCC---h---hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHH
Q 007517 173 QNGEVQKARVVFDQMREKD---D---ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHG 246 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 246 (600)
+.|++++|...|+++.+.+ . ..|..++..+...+ +......+...|++++|
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 6666666666666554322 2 34444433311111 11112234455666666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007517 247 RQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323 (600)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 323 (600)
...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL- 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 66666666543 44667778888888888888888888887653 57888999999999999999999999999864
Q ss_pred CCCCHHH-HHHH------------HHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHH
Q 007517 324 VMPDDVT-LVGV------------LSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMK 385 (600)
Q Consensus 324 ~~p~~~t-~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~ 385 (600)
.|+... +..+ ..++...|++++|..+|+.+.+. .|+ ..+|..++.+|.+.|++++|.+
T Consensus 241 -~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 241 -DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 555443 3333 67889999999999999999875 344 4588999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH------------HHHHhcC-----Cc
Q 007517 386 LIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS------------NIYASQG-----RF 446 (600)
Q Consensus 386 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~ 446 (600)
.++++ ...| +...|..+..+|...|++++|...++++++++|+++..+..++ +.|...| ..
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 99987 3344 6889999999999999999999999999999999999998888 4466666 44
Q ss_pred hHHHHHHHH
Q 007517 447 HDVAELRKN 455 (600)
Q Consensus 447 ~~a~~~~~~ 455 (600)
+++.+.+++
T Consensus 397 ~~~~~~y~~ 405 (450)
T 2y4t_A 397 QEIIKAYRK 405 (450)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555666655
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-22 Score=214.60 Aligned_cols=427 Identities=9% Similarity=-0.047 Sum_probs=309.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC--CCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHh
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP--EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQ 80 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~ 80 (600)
+..|......+.+.|++++|+..|+++. .|+..++..+..+|.+.|++++|...|+++. +.+...|..+...|.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3456777788888888888888888877 4677788888888888888888888888776 3345677778888888
Q ss_pred cCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC----CCcchHHHHH---HHHhcCCChHHHH
Q 007517 81 DGRVDEGREIFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE----KNEVSWTAML---MGYTQCGRIQDAW 150 (600)
Q Consensus 81 ~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----p~~~t~~~ll---~~~~~~g~~~~a~ 150 (600)
.|++++|...|+++.+ ++......++..+........+.+.+..+.. |+...+..-. .............
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 8888888888877643 2334444444444433333333332322211 1111111000 0000111111111
Q ss_pred HHHhhCC----------CCCccchhHHHHHHHh---cCCHHHHHHHHHhccc----------------C-ChhhHHHHHH
Q 007517 151 ELFKAMP----------MKSVVASNSMILGLGQ---NGEVQKARVVFDQMRE----------------K-DDATWSGMIK 200 (600)
Q Consensus 151 ~~~~~~~----------~~~~~~~~~li~~~~~---~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~ 200 (600)
..+.... +.+...+..+...+.. .|++++|...|+++.+ + +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1122333344444444 8999999999988765 1 3567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHH
Q 007517 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVK 280 (600)
Q Consensus 201 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 280 (600)
.+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998865 347778888899999999999999999998875 4567788999999999999999
Q ss_pred HHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 281 GKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 281 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
|...|+.... .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999988643 467889999999999999999999999998752 334567888889999999999999999998764
Q ss_pred CCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 358 YLVEPK----TEHYACMVDLLGR---AGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 358 ~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..-.++ ...+..+...|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 321222 4489999999999 99999999999987 2234 6788999999999999999999999999999999
Q ss_pred CCchHHHH
Q 007517 429 NAGPYILL 436 (600)
Q Consensus 429 ~~~~~~~l 436 (600)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 86665554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.1e-21 Score=207.98 Aligned_cols=411 Identities=11% Similarity=0.034 Sum_probs=216.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC---CCcccHHHHHHHHHhCC
Q 007517 40 WTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK---KNVISWTTMISGYVNNN 113 (600)
Q Consensus 40 ~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g 113 (600)
+..+...+.+.|++++|...|+++. +.++..|..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 107 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcC
Confidence 3444444444444444444444443 12334444444444444555555544444332 23344444555555555
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCC------CCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPM------KSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
++++|+..|+.+.. |+.. ...+..+...+....|...++.+.. .........+..|....+.+.+...+..
T Consensus 108 ~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (537)
T 3fp2_A 108 NFTDAMFDLSVLSLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185 (537)
T ss_dssp CHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred CHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence 55555555542222 2211 1111122222333444444444431 1112233344444445555554444444
Q ss_pred cccCChh---hHHHHHHHHH--------HcCChHHHHHHHHHHHHcCCccCc--------hhHhhHHHHHhhhcchHHHH
Q 007517 187 MREKDDA---TWSGMIKVYE--------RKGYELEVIDLFTLMQKEGVRVNF--------PSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 187 ~~~~~~~---~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~ 247 (600)
....+.. .+..+...+. ..|++++|+.+|+++.+. .|+. .++..+...+...|+++.|.
T Consensus 186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4333222 2222222211 113455555555555543 2221 12333444455555666666
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
..+..+.+.. |+...+..+...|.+.|++++|...|+.+.. .+..+|..+...|...|++++|++.|+++.+..
T Consensus 264 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 264 VLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 6666665543 2355555566666666666666666665432 355667777777777777777777777776642
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCCH
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----P----FEPDA 396 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~~ 396 (600)
+.+...+..+..++...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ + .....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 2234566666677777777777777777776642 344667777777777777777777777765 1 11122
Q ss_pred HHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 397 IIWGSLLGACRTH----------MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 397 ~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
..+..+...+... |++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2344444556666 77788888888888777777777777888888888888888877777654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.1e-20 Score=195.77 Aligned_cols=295 Identities=12% Similarity=0.068 Sum_probs=225.6
Q ss_pred CccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 160 SVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 160 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555566666666666666666666542 245566666666666666666666666666543 2234455566666
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCch---hhHHHH------------HHHHHHcCCHHHHHhhhhhcCC---CCHHHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQFDVDV---YVASVL------------ITMYIKCGELVKGKLIFDNFAS---KDIVMWNS 298 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 298 (600)
+...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+.+.. .+...|..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 666666666666666666543 2222 333333 4558899999999999998753 57889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH--------
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM-------- 370 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l-------- 370 (600)
+...|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...|+.+.+.. +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752 4467789999999999999999999999998742 3345555555
Q ss_pred ----HHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 ----VDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 ----i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+..|.+.|++++|.+.|+++ ...|+ ...|..+...+...|++++|...+++++++.|+++..+..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 33454 447888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++++.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.84 E-value=3.8e-18 Score=170.40 Aligned_cols=290 Identities=11% Similarity=0.049 Sum_probs=184.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc
Q 007517 166 SMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS 242 (600)
Q Consensus 166 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 242 (600)
.+...+.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC
Confidence 333444444444444444444331 123344444444444444444444444444331 1122334444444444444
Q ss_pred hHHHHHHHHHHHHcCCC--CchhhHHH------------HHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHh
Q 007517 243 LDHGRQVHAQLVRCQFD--VDVYVASV------------LITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQ 305 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~--~~~~~~~~------------li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 305 (600)
+++|...+..+.+.... .+...+.. +...|...|++++|...|+++.. .+...|..+...|..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 44444444444443210 12222222 25677778888888888877543 466778888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH------------HHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA------------CMVDL 373 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~------------~li~~ 373 (600)
.|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++...+.. +.+...+. .+...
T Consensus 167 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~ 243 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEE 243 (359)
T ss_dssp TTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887652 3455677777778888888888888888877642 22333332 33667
Q ss_pred HhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 374 LGRAGQVEDAMKLIEAM-PFEPD-A----IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
+.+.|++++|.+.++++ ...|+ . ..+..+...+...|++++|...++++++..|+++..+..++.+|...|+++
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 88899999999998877 22333 2 235557778889999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHhC
Q 007517 448 DVAELRKNMRKR 459 (600)
Q Consensus 448 ~a~~~~~~m~~~ 459 (600)
+|.+.+++..+.
T Consensus 324 ~A~~~~~~a~~~ 335 (359)
T 3ieg_A 324 EAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999988764
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.4e-18 Score=184.25 Aligned_cols=424 Identities=10% Similarity=-0.041 Sum_probs=328.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCC---CCCcchHHHHHHHHHcCCCHHHHHHHHccCC---CCCcchHHHHHHHHH
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMP---EKNVVSWTVMLGGFIRDSRIDDARRLFDMMP---EKDVVAQTNMVLGYC 79 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~ 79 (600)
...|..+...+.+.|++++|++.|+.+. +.++.++..+...|.+.|++++|.+.|+++. +.+...+..+...|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4568889999999999999999999987 4577889999999999999999999999887 346778889999999
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--C----CcchHHHHHHHHhcCCChHHHHHHH
Q 007517 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--K----NEVSWTAMLMGYTQCGRIQDAWELF 153 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p----~~~t~~~ll~~~~~~g~~~~a~~~~ 153 (600)
+.|++++|...|+.+. .+....+..+..+...+....|+..++.+.. | ........+..+....+.+.+...+
T Consensus 105 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999997543 2223333345556666677889999998866 1 1122334444555666777776666
Q ss_pred hhCCCCCcc---chhHHHHHHHhc--------CCHHHHHHHHHhcccCC----------hhhHHHHHHHHHHcCChHHHH
Q 007517 154 KAMPMKSVV---ASNSMILGLGQN--------GEVQKARVVFDQMREKD----------DATWSGMIKVYERKGYELEVI 212 (600)
Q Consensus 154 ~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~ 212 (600)
......+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+...|++++|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 655544333 344444443332 47899999999987642 224667778889999999999
Q ss_pred HHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--
Q 007517 213 DLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-- 290 (600)
Q Consensus 213 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-- 290 (600)
..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++...
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999886 4567788888899999999999999999999876 45678899999999999999999999998753
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcC----CCCCChH
Q 007517 291 -KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKY----LVEPKTE 365 (600)
Q Consensus 291 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~~~ 365 (600)
.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. .......
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 466889999999999999999999999998853 3345678888899999999999999999876532 1223345
Q ss_pred HHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 366 HYACMVDLLGRA----------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 366 ~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
.+..+...|.+. |++++|.+.|++. ...| +...|..+...+...|++++|...+++++++.|+++...
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 566777888888 9999999999987 3234 578899999999999999999999999999999876554
Q ss_pred H
Q 007517 434 I 434 (600)
Q Consensus 434 ~ 434 (600)
.
T Consensus 500 ~ 500 (537)
T 3fp2_A 500 Q 500 (537)
T ss_dssp H
T ss_pred H
Confidence 3
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=2.8e-18 Score=171.41 Aligned_cols=302 Identities=13% Similarity=0.039 Sum_probs=206.0
Q ss_pred HHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChH
Q 007517 136 MLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYEL 209 (600)
Q Consensus 136 ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 209 (600)
+...+...|++++|...++.+. +.++.++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 3333444444444444444333 22333444444455555555555555554432 13445555555555556666
Q ss_pred HHHHHHHHHHHcCCc--cCchhHhhH------------HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc
Q 007517 210 EVIDLFTLMQKEGVR--VNFPSLISV------------LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC 275 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 275 (600)
+|+..|++..+.... .+...+..+ ...+...|++++|...+..+.+.. +.+..++..+...|.+.
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKE 167 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHC
Confidence 666655555543210 111222222 456667788888888888877764 45677788888889999
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHH------------HHHHHHh
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-TLV------------GVLSACS 339 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~------------~ll~a~~ 339 (600)
|++++|...|+.+.. .+..+|..+...|...|++++|+..|++..+. .|+.. .+. .+...+.
T Consensus 168 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 245 (359)
T 3ieg_A 168 GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELI 245 (359)
T ss_dssp TCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887654 46788899999999999999999999998874 34432 222 2255688
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCCh----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKT----EHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
..|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++
T Consensus 246 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 323 (359)
T 3ieg_A 246 RDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYD 323 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHH
Confidence 8999999999999988753 2223 33566889999999999999999988 3344 6889999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 442 (600)
+|...++++++++|+++.....+..++..
T Consensus 324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 324 EAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999998877777766543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.9e-18 Score=171.05 Aligned_cols=283 Identities=10% Similarity=0.099 Sum_probs=115.6
Q ss_pred hcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCC--
Q 007517 80 QDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMP-- 157 (600)
Q Consensus 80 ~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-- 157 (600)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4466666666666664443 6667777777777777777766442 555566777777777777777777666555
Q ss_pred CCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHH
Q 007517 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVC 237 (600)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 237 (600)
.+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|..+..++
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp ------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 34456666777777777777776666643 55567777777777777777777777755 3667777777
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
.+.|+++.|.+.+..+ .++.+|..++.++...|+++.|......+. .++.-...++..|.+.|++++|+.+++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777666 256777777777777777777777666554 333334457778888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHH--HHHHhccCCHHHHHHHHHHhHhcCCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 318 EMFSSGVMPD-DVTLVGV--LSACSYTGKVKEGREIFESMKSKYLVEP------KTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 318 ~m~~~g~~p~-~~t~~~l--l~a~~~~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
..... .+. ...|+.+ +.+-.+.+++.+..+.|. ++-+++| +..+|..++..|..-++++.|...+-
T Consensus 232 ~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 232 AALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 87643 333 2334433 333334445555555554 2234444 46778899999999999999887665
Q ss_pred hC
Q 007517 389 AM 390 (600)
Q Consensus 389 ~m 390 (600)
+-
T Consensus 307 ~h 308 (449)
T 1b89_A 307 NH 308 (449)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-17 Score=163.83 Aligned_cols=286 Identities=11% Similarity=-0.028 Sum_probs=212.8
Q ss_pred CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHH
Q 007517 158 MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVL 234 (600)
Q Consensus 158 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 234 (600)
+.++.+...+...+...|++++|.++|+++.+. +...+..++..+...|++++|+.+++++.... +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455566666777777777777777777776532 44556667777777788888888777777642 23455666666
Q ss_pred HHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChH
Q 007517 235 SVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGE 310 (600)
Q Consensus 235 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 310 (600)
..+...| ++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.. .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777877777777654 44566777788888888888888888877643 34566777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC-------CCCChHHHHHHHHHHhhcCCHHHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL-------VEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
+|++.|++..+.. +.+...+..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888887652 33456777788888888888888888888765321 133467888999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCc
Q 007517 384 MKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY-ASQGRF 446 (600)
Q Consensus 384 ~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 446 (600)
.+.+++. ... .+...|..+...+...|++++|...+++++++.|+++..+..++.++ ...|+.
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9998877 222 35778888899999999999999999999999999988888888888 455553
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=3.2e-17 Score=162.31 Aligned_cols=342 Identities=11% Similarity=0.065 Sum_probs=166.3
Q ss_pred hCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC-
Q 007517 18 EEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK- 96 (600)
Q Consensus 18 ~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 96 (600)
+.|++++|.++++++..| .+|+.|..++.+.|++++|.+.|.+. +|...|..++..+.+.|++++|++.++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 668899999999999554 48999999999999999999999764 5777999999999999999999997776654
Q ss_pred -CCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC
Q 007517 97 -KNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG 175 (600)
Q Consensus 97 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 175 (600)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..|++.+.+.|
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLG 162 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTT
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhc
Confidence 456789999999999999999887774 388889999999999999999999999987 58999999999999
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 176 EVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
++++|.+.++++. ++.+|..++.+|...|+++.|......+ .+.|+. ...++..+.+.|.++++..+++....
T Consensus 163 ~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 163 EYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 9999999999984 8999999999999999999996655432 133433 44688889999999999999999887
Q ss_pred cCCCCchhhHHHHHHHHHHc--CCHHHHHhhhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CC
Q 007517 256 CQFDVDVYVASVLITMYIKC--GELVKGKLIFDNFAS--------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS-GV 324 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~--g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 324 (600)
.. +-....|+-|.-+|++- +++.+..+.|..-.. .+...|.-+.-.|...++++.|... |.+. ..
T Consensus 236 le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~ 311 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTD 311 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTT
T ss_pred Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChh
Confidence 66 66677888888888774 677888888865443 2456899999999999999998874 4443 12
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 325 MPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 325 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
.-+...|-.++ .+..+.+---+...-.... .| ...+-|+.++...=+...+.++|++.
T Consensus 312 a~~~~~f~~~~---~kv~n~elyYkai~fyl~~---~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 312 AWKEGQFKDII---TKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp TCCHHHHHHHH---HHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhhhHHHHHHH---hchhHHHHHHHHHHHHHhc---CH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 22334444443 3444433322222222222 22 23455555555555566666666555
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=8e-17 Score=158.87 Aligned_cols=264 Identities=11% Similarity=0.035 Sum_probs=229.5
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 190 KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
.+...+..+...+...|++++|+.+|+++.... +.+...+..++..+...|++++|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 467778889999999999999999999998764 3345566677888899999999999999999875 55678889999
Q ss_pred HHHHHcC-CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 007517 270 TMYIKCG-ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 270 ~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 345 (600)
..|...| ++++|...|++... .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998754 467889999999999999999999999998853 334566777888999999999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHHcCCHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF----------EPDAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~~~ 414 (600)
+|.+.++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999874 2456889999999999999999999999876 11 3346789999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|...++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999997654
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=3.6e-16 Score=163.69 Aligned_cols=362 Identities=11% Similarity=0.007 Sum_probs=270.3
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcccHHHHHHHHHh----CCChHHHHHHHhhcCC-CCcchHHHH
Q 007517 67 DVVAQTNMVLGYCQ----DGRVDEGREIFDEMPK-KNVISWTTMISGYVN----NNRIDVARKLFEVMPE-KNEVSWTAM 136 (600)
Q Consensus 67 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-p~~~t~~~l 136 (600)
++..+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|+..|++..+ .+...+..+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~L 117 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNL 117 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555 6667777777665443 355666667777776 6777777777777655 455566666
Q ss_pred HHHHhc----CCChHHHHHHHhhCC-CCCccchhHHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH--
Q 007517 137 LMGYTQ----CGRIQDAWELFKAMP-MKSVVASNSMILGLGQ----NGEVQKARVVFDQMREK-DDATWSGMIKVYER-- 204 (600)
Q Consensus 137 l~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~-- 204 (600)
...+.. .+++++|...|+... ..++..+..|..+|.. .++.++|.+.|++..+. +..++..+...|..
T Consensus 118 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 118 GVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 666666 677777777777766 4455666777777776 77888888888877654 67778888888887
Q ss_pred --cCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----
Q 007517 205 --KGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK---- 274 (600)
Q Consensus 205 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---- 274 (600)
.+++++|+..|++..+.| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|..
T Consensus 198 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~ 271 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAG 271 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTS
T ss_pred CCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCC
Confidence 788999999998887765 34555566666654 678899999998888765 45567778888888
Q ss_pred cCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHH
Q 007517 275 CGELVKGKLIFDNFAS-KDIVMWNSIISGYAQY-----GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG---KVK 345 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~ 345 (600)
.++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+-..+...| +.+
T Consensus 272 ~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 272 AKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp SCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 8999999999988765 4677888888888887 89999999999998875 3445555666665556 789
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEV 417 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~ 417 (600)
+|.++|++..+. .++..+..|..+|.. .+++++|.+.|++.-...+...+..|...|.. .++.++|..
T Consensus 349 ~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 424 (490)
T 2xm6_A 349 KAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWA 424 (490)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998874 467888899999988 89999999999987223467788888888888 899999999
Q ss_pred HHHHHhccCCC---CCchHHHHHHHHH
Q 007517 418 AAKKLLQLEPK---NAGPYILLSNIYA 441 (600)
Q Consensus 418 ~~~~~~~~~p~---~~~~~~~l~~~~~ 441 (600)
.++++.+.+|+ ++.....++.++.
T Consensus 425 ~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 425 WFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 99999998854 5555555555544
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=5.2e-16 Score=164.15 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=85.2
Q ss_pred HHHhhhhhcCC---C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 280 KGKLIFDNFAS---K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD--VTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 280 ~A~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+. .|+. ..|......+.+.|++++|+++|+.
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555554432 1 3455555555555555555555555555542 3332 2444444445555555555555555
Q ss_pred hHhcCCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 354 MKSKYLVEPKTEHYACMVDL-LGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
..+.. +.+...|...+.+ +...|++++|.++|++. ...| +...|..++..+...|+.+.|..+++++++..|.+|
T Consensus 382 Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 54421 1122222222211 22355555555555544 1122 345555555555555555555555555555544433
Q ss_pred c----hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 431 G----PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 431 ~----~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
. .+...+......|+.+.+.++.+++.+
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 344444444555555555555555543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.77 E-value=6.2e-16 Score=163.57 Aligned_cols=390 Identities=10% Similarity=0.092 Sum_probs=282.5
Q ss_pred CCCcchHHHHHHHHHcCCCHHHHHHHHccCCC---CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHH
Q 007517 34 EKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE---KDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISG 108 (600)
Q Consensus 34 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~ 108 (600)
+.|...|..++. +.+.|++++|+.+|+++.+ .+...|..++..+.+.|++++|+.+|++... |++..|...+..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 346778888888 4788999999999999874 3566789999999999999999999999876 777778777753
Q ss_pred H-HhCCChHHHHH----HHhhcCC-----C-CcchHHHHHHHHhc---------CCChHHHHHHHhhCCC-CCc---cch
Q 007517 109 Y-VNNNRIDVARK----LFEVMPE-----K-NEVSWTAMLMGYTQ---------CGRIQDAWELFKAMPM-KSV---VAS 164 (600)
Q Consensus 109 ~-~~~g~~~~A~~----~~~~m~~-----p-~~~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 164 (600)
. ...|+.++|.+ +|++... | +...|...+..... .|+++.|..+|+..+. |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 35677777665 6666533 2 34566666665543 6889999999999883 221 122
Q ss_pred hHHHHHH-------------HhcCCHHHHHHHHHhc------cc-------CC--------hhhHHHHHHHHHHc----C
Q 007517 165 NSMILGL-------------GQNGEVQKARVVFDQM------RE-------KD--------DATWSGMIKVYERK----G 206 (600)
Q Consensus 165 ~~li~~~-------------~~~g~~~~A~~~f~~~------~~-------~~--------~~~~~~li~~~~~~----g 206 (600)
....... .+.++++.|..++.+. .+ |+ ...|...+.....+ +
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2222211 1234567777766651 11 11 24566665443332 2
Q ss_pred Ch----HHHHHHHHHHHHcCCccCchhHhhHHHHHhh-------hcchH-------HHHHHHHHHHHcCCCCchhhHHHH
Q 007517 207 YE----LEVIDLFTLMQKEGVRVNFPSLISVLSVCAS-------LASLD-------HGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 207 ~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
+. .+|+.+|++..... +-+...|......+.. .|+++ .|..+++..++.-.+.+..++..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 47788899888752 2345566666666654 68877 889999998874345678889999
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC--C-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HhccC
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS--K-DI-VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSA-CSYTG 342 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~~g 342 (600)
+..+.+.|++++|..+|+++.. | +. ..|...+..+.+.|+.++|.++|++..+. .|+ ...+...... +...|
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999999998653 3 33 58999999899999999999999999875 333 2233322222 23589
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD--AIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.+.
T Consensus 406 ~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~ 483 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 483 (530)
T ss_dssp CHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred ChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999988753 346889999999999999999999999987 33342 558988899889999999999
Q ss_pred HHHHHHhccCCCC
Q 007517 417 VAAKKLLQLEPKN 429 (600)
Q Consensus 417 ~~~~~~~~~~p~~ 429 (600)
.+.+++.+..|++
T Consensus 484 ~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 484 KVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHTHHH
T ss_pred HHHHHHHHHCchh
Confidence 9999999998865
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=5.9e-15 Score=162.20 Aligned_cols=373 Identities=11% Similarity=0.107 Sum_probs=256.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHccCC-CC-----CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCC
Q 007517 41 TVMLGGFIRDSRIDDARRLFDMMP-EK-----DVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNR 114 (600)
Q Consensus 41 ~~ll~~~~~~g~~~~A~~~~~~m~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 114 (600)
+..+++|...|.+.+|.++++++. ++ +....+.|+.+..+. +..+..+..++...-+ ..-+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 334455555555556665555554 11 112333444444443 2333333333332211 3335566777788
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhh
Q 007517 115 IDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDAT 194 (600)
Q Consensus 115 ~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~ 194 (600)
+++|..+|++...++ ...+.++. ..+++++|.++.+++ .++.+|..+..++.+.|++++|...|.+. .|...
T Consensus 1065 yEEAf~IYkKa~~~~-~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVNT-SAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHHHHHHHHHcCCHH-HHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 888888888764311 11122222 567788888887766 44667888888888888888888888664 57778
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
|..++..+.+.|++++|+++|...++.. ++....+.+..++++.++++....+. + .++...+..+.+.|..
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYD 1207 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHh
Confidence 8888888888888888888888776653 33333445777888888777544332 2 3455566678888888
Q ss_pred cCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 007517 275 CGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESM 354 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~ 354 (600)
.|++++|..+|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|++..|......
T Consensus 1208 eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~- 1275 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 1275 (1630)
T ss_pred cCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-
Confidence 88899998888875 48888888898889999999888876 3557888888888888888888876553
Q ss_pred HhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHhccCC---
Q 007517 355 KSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTH--MKLDLAEVAAKKLLQLEP--- 427 (600)
Q Consensus 355 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p--- 427 (600)
+..++..+..++..|.+.|.+++|.++++.. +..|. ...|+-|...+.+. ++..++.+.|..-..+.|
T Consensus 1276 -----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred -----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 2346777889999999999999999999876 55554 44566666666654 566677777776666655
Q ss_pred --CCCchHHHHHHHHHhcCCchHHHH
Q 007517 428 --KNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 428 --~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.++..+..+...|.+.|+|+.|..
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 566778889999999999999984
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.9e-17 Score=164.04 Aligned_cols=292 Identities=12% Similarity=0.007 Sum_probs=197.2
Q ss_pred cCCChHHHHH-HHhhCC---CC----CccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHH
Q 007517 142 QCGRIQDAWE-LFKAMP---MK----SVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELE 210 (600)
Q Consensus 142 ~~g~~~~a~~-~~~~~~---~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 210 (600)
..|++++|.. .+.... +. +...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466777776 666555 11 234455666677777777777777776653 245566667777777777777
Q ss_pred HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC
Q 007517 211 VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS 290 (600)
Q Consensus 211 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 290 (600)
|+..|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+..+... .. . .
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~-~ 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G-A 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h-h
Confidence 777777766643 224455555666666666666666666666654321 11111111000 00 0 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP---DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHY 367 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 367 (600)
.....+..+. .+...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+.. +.+...+
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 254 (368)
T 1fch_A 180 GLGPSKRILG-SLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLW 254 (368)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred cccHHHHHHH-HHhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHH
Confidence 0001111223 333788999999999999875 34 46788888899999999999999999988752 4467899
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-----------CchHH
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-----------AGPYI 434 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~ 434 (600)
..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|...+++++++.|++ +..+.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 99999999999999999999987 3334 57889999999999999999999999999988877 67899
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.++.+|...|++++|..++++
T Consensus 335 ~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 335 TLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999988763
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=4e-15 Score=155.68 Aligned_cols=350 Identities=11% Similarity=0.025 Sum_probs=295.8
Q ss_pred CCCcccHHHHHHHHHh----CCChHHHHHHHhhcCC-CCcchHHHHHHHHhc----CCChHHHHHHHhhCC-CCCccchh
Q 007517 96 KKNVISWTTMISGYVN----NNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQ----CGRIQDAWELFKAMP-MKSVVASN 165 (600)
Q Consensus 96 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~ 165 (600)
..++.++..|...|.. .+++++|+..|++..+ .+...+..+...+.. .++.++|...|++.. ..++..+.
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 115 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQ 115 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3577788888888888 8999999999998877 677788888888888 899999999999988 55677788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcccC-ChhhHHHHHHHHHH----cCChHHHHHHHHHHHHcCCccCchhHhhHHHH
Q 007517 166 SMILGLGQ----NGEVQKARVVFDQMREK-DDATWSGMIKVYER----KGYELEVIDLFTLMQKEGVRVNFPSLISVLSV 236 (600)
Q Consensus 166 ~li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 236 (600)
.|..+|.. .++.++|...|++..+. +...+..+...|.. .+++++|++.|++..+.| +...+..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88899988 88999999999998765 67788888888988 889999999999998875 55667777777
Q ss_pred Hhh----hcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH----cCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHh--
Q 007517 237 CAS----LASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK----CGELVKGKLIFDNFAS-KDIVMWNSIISGYAQ-- 305 (600)
Q Consensus 237 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 305 (600)
+.. .++.++|...+....+.| +......|..+|.. .++.++|...|++..+ .+..++..+...|..
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 269 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGL 269 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Confidence 776 789999999999999876 56678888889987 8999999999998765 577788888888888
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC
Q 007517 306 --YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT-----GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG 378 (600)
Q Consensus 306 --~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 378 (600)
.++.++|+++|++..+.| +...+..+...+... ++.++|..+|+...+. .+...+..+..+|.+.|
T Consensus 270 ~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 270 AGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLG 342 (490)
T ss_dssp TSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCC
Confidence 899999999999998765 344555666666665 8999999999998874 35677888999998867
Q ss_pred ---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCch
Q 007517 379 ---QVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFH 447 (600)
Q Consensus 379 ---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~ 447 (600)
++++|.+.|++.-...+...+..|...|.. .+++++|...++++.+.. ++..+..|+.+|.. .++++
T Consensus 343 ~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 789999999987223578889999999988 899999999999998864 46789999999998 89999
Q ss_pred HHHHHHHHHHhCC
Q 007517 448 DVAELRKNMRKRN 460 (600)
Q Consensus 448 ~a~~~~~~m~~~g 460 (600)
+|.+.+++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999998866
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1.3e-16 Score=160.13 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=154.3
Q ss_pred hCCChHHHHH-HHhhcCC--C-----CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHH
Q 007517 111 NNNRIDVARK-LFEVMPE--K-----NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQK 179 (600)
Q Consensus 111 ~~g~~~~A~~-~~~~m~~--p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 179 (600)
..|++++|++ .|.+... | +...+..+...+...|++++|...++.+. +.+..++..+...|.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3456666666 6665544 2 23456666777777777777777777666 4455667777788888888888
Q ss_pred HHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhh----------------HHHHHhhh
Q 007517 180 ARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLIS----------------VLSVCASL 240 (600)
Q Consensus 180 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----------------ll~~~~~~ 240 (600)
|...|+++.+ .+..+|..+...|...|++++|+..|+++.... |+...... .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 8888887653 367788888999999999999999999988753 33222221 12222245
Q ss_pred cchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 241 ASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
|++++|...+..+.+..... ++..+|..+...|...|++++|+..|+++.
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555443111 023444445555555555555555555554
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----
Q 007517 321 SSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP----- 394 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----- 394 (600)
+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|.+.++++ ...|
T Consensus 245 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 321 (368)
T 1fch_A 245 SVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred HhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence 431 2223444555555555555555555555554421 233455555555555555555555555544 1111
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 395 -------DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 395 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
...+|..+..++...|+.++|..++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1455666666666666666666555543
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.8e-14 Score=158.46 Aligned_cols=369 Identities=11% Similarity=0.116 Sum_probs=236.6
Q ss_pred HHHHHHHHhCCChHHHHHHHhhCC-CCC-----cchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCC
Q 007517 10 TAMVRGYVEEGMITEAGTLFWQMP-EKN-----VVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 10 ~~ll~~~~~~g~~~~A~~~~~~m~-~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 83 (600)
...+++|...|.+.+|+++++++. .++ ...-+.|+.+..+. +.....+...+... .....+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhCCC
Confidence 567889999999999999999988 322 24555566555554 33444444433332 224456677777888
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccc
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVA 163 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (600)
+++|..+|++... ...+.+.++. ..+++++|.++.++. -++.+|..+..++...|++++|...|.+. .|...
T Consensus 1065 yEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~sa 1136 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSS 1136 (1630)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHH
Confidence 8888888887642 2222233332 566777777777755 33566777888888888888888777554 56666
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
|..++..+.+.|++++|.+.+....+ ++....+.++.+|++.+++++. +-| .+ .|+...+..+...|...|
T Consensus 1137 y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel-e~f---I~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1137 YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL-EEF---IN---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH-HHH---Hh---CCCHHHHHHHHHHHHhcC
Confidence 67778888888888888888766543 2333344577777777777743 333 11 345556666777777888
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~--- 1275 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 1275 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence 888888887764 36777888888888888888887766 4557777777777777777666665443
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhh--cCCHHHHHHHHHhC-CCCC---
Q 007517 322 SGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGR--AGQVEDAMKLIEAM-PFEP--- 394 (600)
Q Consensus 322 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~--~g~~~~A~~~~~~m-~~~p--- 394 (600)
+..+...+..++..|...|.+++|..+++.... +.+ ....|+-|..+|.+ -+++.++.++|..- .+.|
T Consensus 1276 --Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r 1350 (1630)
T 1xi4_A 1276 --IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 1350 (1630)
T ss_pred --hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH
Confidence 233444455666677777777777777765543 222 24445555555554 34555555555543 3222
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHH
Q 007517 395 ---DAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 395 ---~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+...|.-+.-.|.+.|+++.|.
T Consensus 1351 ~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1351 AAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3455777777777777777666
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=2.4e-15 Score=145.39 Aligned_cols=268 Identities=10% Similarity=-0.017 Sum_probs=206.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 170 GLGQNGEVQKARVVFDQMREKDD----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
-....|++..|+..+++....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 34556788888887777655432 2345567788888888888876644 134566677777777788888888
Q ss_pred HHHHHHHHHHcCC-CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007517 246 GRQVHAQLVRCQF-DVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 246 a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 324 (600)
|.+.++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888888877664 44566777788999999999999999998 568889999999999999999999999999885
Q ss_pred CCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007517 325 MPDDVTL---VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIW 399 (600)
Q Consensus 325 ~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~ 399 (600)
.|+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4665322 122344445689999999999999863 568899999999999999999999999987 3345 67789
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 400 GSLLGACRTHMKLDL-AEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
..++..+...|+.++ +.++++++++++|+++.. .+...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHH
Confidence 999999999999875 678999999999998643 344455555555543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=1.9e-16 Score=158.94 Aligned_cols=257 Identities=9% Similarity=-0.041 Sum_probs=170.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 195 WSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 195 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+..++..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444444444444444444332 1223334444444444444444444444444432 2334555555666666
Q ss_pred cCCHHHHHhhhhhcCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhc
Q 007517 275 CGELVKGKLIFDNFASK-------------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PDDVTLVGVLSACSY 340 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 340 (600)
.|++++|...|+++... ....+..+...|...|++++|++.|+++.+.... ++..++..+...+..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 66666666666554431 1223445577888899999999999999875311 156788888889999
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.|++++|.+.|+.+.+.. +.+...|..+..+|.+.|++++|.+.|+++ ...| +..+|..+...|...|++++|...
T Consensus 226 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999988752 456889999999999999999999999987 3344 488899999999999999999999
Q ss_pred HHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 419 AKKLLQLEPK------------NAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 419 ~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998776 356788999999999999988876653
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=9.4e-16 Score=159.62 Aligned_cols=322 Identities=12% Similarity=0.037 Sum_probs=180.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC--------C---CCccchhHHHHHHHhc--CCHHHHHHHHHhccc--C-ChhhH
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP--------M---KSVVASNSMILGLGQN--GEVQKARVVFDQMRE--K-DDATW 195 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~--------~---~~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~ 195 (600)
+|..+..+|...|++++|...++++. + ....++..+..++.+. +++++|...|++..+ | ++..+
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~ 175 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHH
Confidence 44455555555555555555544433 0 0112233333333333 346677777766543 2 34444
Q ss_pred HHHHHH---HHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHh----hhcchHHHHHHHHHHHHcCCCCchhhHHH
Q 007517 196 SGMIKV---YERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCA----SLASLDHGRQVHAQLVRCQFDVDVYVASV 267 (600)
Q Consensus 196 ~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 267 (600)
..+... +...++.++|++.|++..+. .|+ ..++..+...+. ..++.++|.+.+....+.. +.+..++..
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~ 252 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHH
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHH
Confidence 444433 23446666777777766654 233 333333333333 2345667777777766654 445566677
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHHCCCC
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQ-------------------YGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~ 325 (600)
+...|.+.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+.. +
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 77777777777777777776543 345555555554432 233567888888877642 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChH----HHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 007517 326 PDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTE----HYACMVD-LLGRAGQVEDAMKLIEAM-PFEPDAIIW 399 (600)
Q Consensus 326 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 399 (600)
.+..++..+...+...|++++|.+.|++..+. .|+.. .+..+.. .+...|+.++|.+.|++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 33456777888899999999999999988764 23322 2333333 235678999999999876 556665443
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeE
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSW 469 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~ 469 (600)
... ...+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 322 3445677888889999999999999999999999999999999998876443333444
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.72 E-value=3.4e-16 Score=157.09 Aligned_cols=256 Identities=10% Similarity=0.004 Sum_probs=134.5
Q ss_pred chHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHH
Q 007517 131 VSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYER 204 (600)
Q Consensus 131 ~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 204 (600)
..+..+...+.+.|++++|...++.+. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN 145 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc
Confidence 345555556666666666666666555 44455666667777777777777777776653 256677777777777
Q ss_pred cCChHHHHHHHHHHHHcCCccCc-h----------hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNF-P----------SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI 273 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~-~----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 273 (600)
.|++++|+..|+++.+.. |+. . .+..+...+...|++++|...+..+.+.....
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------- 210 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM------------- 210 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS-------------
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-------------
Confidence 778888877777776642 221 1 11122444455555555555555555543110
Q ss_pred HcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
.+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++...|++++|...|++
T Consensus 211 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 211 -----------------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 033444444444445555555555555544421 22234444455555555555555555555
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-------------DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-------------~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.+.. +.+...+..+..+|.+.|++++|.+.|+++ ...| +..+|..+..++...|+.+.+..+.
T Consensus 273 al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 273 ALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 44421 223445555555555555555555555544 0011 2455666666666666666665555
Q ss_pred HH
Q 007517 420 KK 421 (600)
Q Consensus 420 ~~ 421 (600)
++
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.1e-15 Score=147.82 Aligned_cols=246 Identities=9% Similarity=0.035 Sum_probs=202.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCccCc--hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC
Q 007517 199 IKVYERKGYELEVIDLFTLMQKEGVRVNF--PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG 276 (600)
Q Consensus 199 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 276 (600)
|+-....|++..|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4556678999999998877643 33443 3456678899999999999875543 24667788889999999999
Q ss_pred CHHHHHhhhhhcC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 007517 277 ELVKGKLIFDNFA----SK-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIF 351 (600)
Q Consensus 277 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 351 (600)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ ..+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 677788888999999999999999987 456778888889999999999999999
Q ss_pred HHhHhcCCCCCChHH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 352 ESMKSKYLVEPKTEH---YACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 352 ~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.+.+. .|+... ...++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 355321 233445556679999999999998 224578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHD-VAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 459 (600)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999986 57888888764
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=5.7e-16 Score=152.52 Aligned_cols=272 Identities=8% Similarity=0.006 Sum_probs=187.0
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHh
Q 007517 162 VASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCA 238 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 238 (600)
..+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|+..|+++.... +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3445556666667777777776666542 245566666666666677777766666666542 223344555555555
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHH--HHHhcCChHHHHHHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIIS--GYAQYGLGEKSLKVF 316 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~ 316 (600)
..|++++|...+..+.+... .+...+..+.... ++......+.. .+...|++++|++.+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 55555555555555554421 1111111110000 00011111112 266778899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007517 317 HEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP- 394 (600)
Q Consensus 317 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 394 (600)
+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ...|
T Consensus 162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9988753 3356788888889999999999999999988752 446888999999999999999999999987 3233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK------------NAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
+...|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++++|.+++++.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5788999999999999999999999999999998 6788999999999999999999887643
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.2e-17 Score=173.06 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=113.5
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFA-------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVT 330 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 330 (600)
...-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCH-HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 331 LVGVLSACSYTGKV-KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 331 ~~~ll~a~~~~g~~-~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....|.+-++...++...+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999874 7889999999986 89999999999998888776666555554433
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=1.4e-14 Score=142.37 Aligned_cols=220 Identities=12% Similarity=0.047 Sum_probs=120.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcC
Q 007517 133 WTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKG 206 (600)
Q Consensus 133 ~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 206 (600)
+..+...+...|++++|..+++.+. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 3344444444444554444444444 33344455556666666666666666666543 25667777778888888
Q ss_pred ChHHHHHHHHHHHHcCCccCchhHhhHH--------------H--HHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 207 YELEVIDLFTLMQKEGVRVNFPSLISVL--------------S--VCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 207 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
++++|+..|+++.... |+.......+ . .+...|++++|...+..+.+.. +.+..++..+..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 8888888888877642 3322222211 2 2556667777777777766654 334555555666
Q ss_pred HHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 347 (600)
.|.+.|++++|...|+++.. .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666666666655554432 234555555555555555555555555554431 12233444444555555555555
Q ss_pred HHHHHHhHh
Q 007517 348 REIFESMKS 356 (600)
Q Consensus 348 ~~~~~~~~~ 356 (600)
.+.++.+.+
T Consensus 260 ~~~~~~a~~ 268 (327)
T 3cv0_A 260 AKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.9e-14 Score=149.74 Aligned_cols=371 Identities=11% Similarity=-0.019 Sum_probs=203.5
Q ss_pred cchHHHHHHHHHcCCCHHHHHHHHccCC------------CCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------
Q 007517 37 VVSWTVMLGGFIRDSRIDDARRLFDMMP------------EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK-------- 96 (600)
Q Consensus 37 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------- 96 (600)
...||.|...+...|++++|++.|++.. .....+|+.+...|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4567888888888888888888876643 12345677788888888888888777765431
Q ss_pred ---CCcccHHHHHHHHHh--CCChHHHHHHHhhcCC--CCcc-hHHHHHHH---HhcCCChHHHHHHHhhCC---CCCcc
Q 007517 97 ---KNVISWTTMISGYVN--NNRIDVARKLFEVMPE--KNEV-SWTAMLMG---YTQCGRIQDAWELFKAMP---MKSVV 162 (600)
Q Consensus 97 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~--p~~~-t~~~ll~~---~~~~g~~~~a~~~~~~~~---~~~~~ 162 (600)
....+++.+..++.. .+++++|++.|++..+ |+.. .+..+..+ +...++.++|.+.+++.. +.+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~ 210 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY 210 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH
Confidence 122345544444444 3457788888887766 5533 33333333 344566677777776665 34444
Q ss_pred chhHHHHHHHh----cCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc-hhHhhHH
Q 007517 163 ASNSMILGLGQ----NGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF-PSLISVL 234 (600)
Q Consensus 163 ~~~~li~~~~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 234 (600)
++..+...+.. .|+.++|.+.+++... .+..++..+...|...|++++|+..|++..+. .|+. .++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 44444444443 3566777777776542 35566777777788888888888888777664 3433 2333333
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEK 311 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 311 (600)
..+...+.... ... ...........+..+.|...|+.... .+..+|..+...|...|++++
T Consensus 289 ~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 289 CCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH
Confidence 32221111000 000 00000111112335667777765533 455678888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 312 SLKVFHEMFSSGVMPDDV--TLVGVLS-ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
|++.|++..+....|... .+..+.. .....|+.++|...|.+..+ +.|+....... .+.+.++++
T Consensus 353 A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~ 420 (472)
T 4g1t_A 353 AEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHH
Confidence 999999988764333321 1222221 23567899999999998876 34554332222 223333443
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 389 AM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 389 ~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
.. .. +.+..+|..|...+...|++++|+..+++++++.|.+|.+...++
T Consensus 421 ~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 33 11 346778999999999999999999999999999998877665543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=168.65 Aligned_cols=147 Identities=10% Similarity=0.067 Sum_probs=126.3
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhcc-------cCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhH
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMR-------EKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISV 233 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 233 (600)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|+++|++|...|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999998764 479999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcch-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC-----CHHHHHHHHHHHHhcC
Q 007517 234 LSVCASLASL-DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK-----DIVMWNSIISGYAQYG 307 (600)
Q Consensus 234 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g 307 (600)
|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999999888887777777776655432 1334444555565544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=4.2e-14 Score=130.46 Aligned_cols=194 Identities=12% Similarity=0.045 Sum_probs=154.0
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGV 334 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 334 (600)
|++...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777888888888999999988887654 46788888999999999999999999998875 454 4577777
Q ss_pred HHHHhcc-----------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 007517 335 LSACSYT-----------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSL 402 (600)
Q Consensus 335 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 402 (600)
..++... |++++|...+++..+.. +.+...+..+..+|...|++++|.+.|++. .+..+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 7888888 99999999999998752 345788999999999999999999999987 212788899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 403 LGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 403 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888764
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=5.7e-14 Score=132.94 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=164.3
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 272 (600)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 355666666666666666666666666554 444444444444444444444444444443321000
Q ss_pred HHcCCHHHHHhhhhhcCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 273 IKCGELVKGKLIFDNFASKD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.++ ..+|..+...|...|++++|++.|++..+. .|+.. .+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHH
Confidence 001 467778888888888888999988888874 45533 345567889999
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
+.++.+.... +.+...+..+...|.+.|++++|.+.+++. .. +.+...|..+...+...|++++|...++++++..
T Consensus 126 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999887642 335678888999999999999999999887 22 3367889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.4e-14 Score=132.56 Aligned_cols=232 Identities=10% Similarity=-0.032 Sum_probs=158.7
Q ss_pred cchhHHHHHHHhcCCHHHHHHHHHhccc--CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc--cC----chhHhhH
Q 007517 162 VASNSMILGLGQNGEVQKARVVFDQMRE--KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR--VN----FPSLISV 233 (600)
Q Consensus 162 ~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~l 233 (600)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++....... |+ ..++..+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4567788899999999999999988753 57788999999999999999999999998774211 11 2445555
Q ss_pred HHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHH
Q 007517 234 LSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSL 313 (600)
Q Consensus 234 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 313 (600)
...+...|++++|...+..+.+.. |+ ...+...|++++|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------------~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RT--------------------------------------ADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CC--------------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--ch--------------------------------------hHHHHHHhHHHHHH
Confidence 555556666666666666555533 11 12244445566666
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 007517 314 KVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P 391 (600)
Q Consensus 314 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 391 (600)
..++++... .|+ ...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++. .
T Consensus 126 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 126 KKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 666666553 333 2345556666666777777777777666542 345667777777777788888887777766 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCCCchHHHHH
Q 007517 392 FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE------PKNAGPYILLS 437 (600)
Q Consensus 392 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~ 437 (600)
..| +...|..+...+...|++++|...+++++++. |++...+..+.
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 233 46777888888888888888888888888877 66654444443
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=9.2e-13 Score=135.77 Aligned_cols=339 Identities=9% Similarity=0.014 Sum_probs=183.4
Q ss_pred HHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCCh---HHHHHHHhhCCCCCccchhHHHHHHHhcC-----CHH
Q 007517 108 GYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRI---QDAWELFKAMPMKSVVASNSMILGLGQNG-----EVQ 178 (600)
Q Consensus 108 ~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~ 178 (600)
.+.+.|++++|+++|++..+ .+...+..+...+...|+. ++|...|+.....++..+..|..++...| +.+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~ 91 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHH 91 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHH
Confidence 33344444444444444433 2223333333333334444 45555554444334444444444333333 445
Q ss_pred HHHHHHHhcccC-ChhhHHHHHHHHHHcCChHH---HHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHH
Q 007517 179 KARVVFDQMREK-DDATWSGMIKVYERKGYELE---VIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLV 254 (600)
Q Consensus 179 ~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 254 (600)
+|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...+...+.++.+......+.
T Consensus 92 ~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~ 168 (452)
T 3e4b_A 92 EAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERIC 168 (452)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHH
Confidence 555555554433 33445555555554443322 333333333332 23334444444444443333333322222
Q ss_pred HcCCCCchhhHHHHHHHHHHcC---CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhc----CChHHHHHHHHHHHHCCC
Q 007517 255 RCQFDVDVYVASVLITMYIKCG---ELVKGKLIFDNFAS---KDIVMWNSIISGYAQY----GLGEKSLKVFHEMFSSGV 324 (600)
Q Consensus 255 ~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~ 324 (600)
+.-...++..+..|..+|.+.| +.++|.+.|+...+ ++...+..|...|... +++++|+++|++.. .|
T Consensus 169 ~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g- 246 (452)
T 3e4b_A 169 KAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG- 246 (452)
T ss_dssp HHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-
Confidence 2222233336666777777777 67777777765533 3444445566666443 57888888888876 32
Q ss_pred CCCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCH
Q 007517 325 MPDDVTLVGVLSA-C--SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-----QVEDAMKLIEAMPFEPDA 396 (600)
Q Consensus 325 ~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~ 396 (600)
+...+..+-.. + ...++.++|.++|++..+. | +...+..|..+|. .| ++++|.+.|++.- ..++
T Consensus 247 --~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~ 318 (452)
T 3e4b_A 247 --YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREV 318 (452)
T ss_dssp --STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCH
T ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCH
Confidence 23333334333 2 4578888888888887763 2 6677777888877 55 8999999999887 5577
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007517 397 IIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 397 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 461 (600)
..+..|...|.. ..+.++|...++++.+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 319 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 319 AADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 777777776665 34899999999998774 445778889999875 4588899999999888774
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.1e-13 Score=130.41 Aligned_cols=245 Identities=10% Similarity=-0.057 Sum_probs=131.9
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCc--hhHhhHHHHH
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNF--PSLISVLSVC 237 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~ 237 (600)
........+.+.|++++|...|++..+. +...|..+...|...|++++|+..|++....+..|+. ..+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3444556666677777777777665432 3446666666667777777777776666653211111 1144445555
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007517 238 ASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFH 317 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 317 (600)
...|++++|...+..+.+.. +.+..++..+...|. ..|++++|++.|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~-------------------------------~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY-------------------------------NKGNFPLAIQYME 132 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH-------------------------------HTTCHHHHHHHHG
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH-------------------------------HccCHHHHHHHHH
Confidence 55555555555555555543 223344444444444 4444455554444
Q ss_pred HHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC---
Q 007517 318 EMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ---VEDAMKLIEAM--- 390 (600)
Q Consensus 318 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m--- 390 (600)
+..+. .|+ ...+..+...+...+++++|.+.|+.+.+.. +.+...+..+...+...|+ +++|...+++.
T Consensus 133 ~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 133 KQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 44432 222 2223333212222335555555555554431 2224445555555555555 44454444443
Q ss_pred -CCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 391 -PFEPD------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 391 -~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
...|+ ...|..+...+...|++++|...++++++++|+++.....+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 11122 246777888889999999999999999999999977766666555443
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=8.8e-14 Score=133.12 Aligned_cols=239 Identities=11% Similarity=-0.064 Sum_probs=169.3
Q ss_pred CChHHHHHHHHHHHHcCC--c-cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH
Q 007517 206 GYELEVIDLFTLMQKEGV--R-VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK 282 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~--~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 282 (600)
|++++|+..|+++.+... . .+..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455556666655555321 1 123445555555556666666666666665543 345667777777888888888888
Q ss_pred hhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 283 LIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 283 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
..|++... .+..+|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...+.......
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88876643 35778888899999999999999999999874 5665555555556677799999999998877652
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 360 VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 360 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+++...+. ++..+...++.++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|++...
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 251 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE- 251 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-
Confidence 34444444 777788888889999999876 33332 5778899999999999999999999999999977443
Q ss_pred HHHHHHHHhcCCchHHHHHH
Q 007517 434 ILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 434 ~~l~~~~~~~g~~~~a~~~~ 453 (600)
...++...|++++|.+.+
T Consensus 252 --~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 --HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHhhHHHH
Confidence 366778888888887665
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.7e-13 Score=141.36 Aligned_cols=376 Identities=9% Similarity=0.001 Sum_probs=193.2
Q ss_pred HHHHHHcCCCHHHHHHHHccCCC-CCcchHHHHHHHHHhcCCh---HHHHHHHhhCCCCCcccHHHHHHHHHhCC-----
Q 007517 43 MLGGFIRDSRIDDARRLFDMMPE-KDVVAQTNMVLGYCQDGRV---DEGREIFDEMPKKNVISWTTMISGYVNNN----- 113 (600)
Q Consensus 43 ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g----- 113 (600)
+...+.+.|++++|.++|++..+ .++..+..|...|...|+. ++|..+|++..+.+..++..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34445556666666666665542 2344444455555555555 56666666555445555555555344433
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcc-cCC
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMR-EKD 191 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~ 191 (600)
++++|+..|++..+ .+...+..+...|...+..+.+.. +.+.+.... ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~----------------------------a~~~~~~a~~~g~ 140 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN----------------------------AQQQISQWQAAGY 140 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC----------------------------HHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH----------------------------HHHHHHHHHHCCC
Confidence 44555555555444 223344444444443332222111 122222211 123
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc---chHHHHHHHHHHHHcCCCCchhhHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA---SLDHGRQVHAQLVRCQFDVDVYVASVL 268 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l 268 (600)
...+..+...|...+.++++......+.+.-...+...+..+...+...| +.++|...+....+.| +++...+..|
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~L 219 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSV 219 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 44445555555555544444433333322212222234444444555555 5555556665555555 3333433455
Q ss_pred HHHHHHc----CCHHHHHhhhhhcCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 269 ITMYIKC----GELVKGKLIFDNFASKDIVMWNSIISG-Y--AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 269 i~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
..+|... ++.++|...|+.....+...+..|... | ...+++++|+++|++..+.| +...+..+-..|. .
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 5556444 577777777777663356667777666 3 45788888999888888776 4445555555554 4
Q ss_pred C-----CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 007517 342 G-----KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT---- 408 (600)
Q Consensus 342 g-----~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~---- 408 (600)
| +.++|.++|++.. +.++..+..|..+|.. ..++++|.+.|++.--..+......|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~ 370 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGT 370 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTB
T ss_pred CCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCC
Confidence 4 8888988888765 3456777778877766 34889999999877222344455556555553
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HhcCCchHHHHHHHHHHh
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY--ASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~~~~m~~ 458 (600)
..|.++|...++++.+..+.. ....+..+. ...++.++|.++.++-.+
T Consensus 371 ~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 371 KPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 458899999999988876543 233333332 233455666666665543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=1.6e-12 Score=122.64 Aligned_cols=196 Identities=8% Similarity=-0.035 Sum_probs=141.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34556666677777777777777766542 356677777777777888888888887777642 23455666677777
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 415 (600)
...|++++|.++++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 778888888888877765 22233 4566777778888888888888887776 2223 466777777888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++++++..|+++..+..++.+|...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888877777778888888888888888888877654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=3.2e-12 Score=120.54 Aligned_cols=204 Identities=11% Similarity=-0.001 Sum_probs=148.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
...|..+...+...|++++|+..|+++.... +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------------------------------------~~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID------------------------------------PSSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------------------------------------CChHHHHHHHHHH
Confidence 4556666777777777777777777766542 2233445555555
Q ss_pred HHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEG 347 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 347 (600)
|.+.|++++|.+.|+++.. .+...|..+...|...|++++|+++|+++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666655432 3566777777788888888888888888876334554 34666777788888888888
Q ss_pred HHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 348 REIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 348 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.++|...++++.+.
T Consensus 161 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888887642 345778888999999999999999999887 333 45677888888899999999999999999999
Q ss_pred CCCCCchH
Q 007517 426 EPKNAGPY 433 (600)
Q Consensus 426 ~p~~~~~~ 433 (600)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99885443
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2e-12 Score=119.41 Aligned_cols=196 Identities=13% Similarity=0.035 Sum_probs=133.9
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
+..++..+...|...|++++|...|+.+.. .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 345556666666777777777777665432 355667777777777777777777777776642 2345566666677
Q ss_pred Hhcc-CCHHHHHHHHHHhHhcCCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 338 CSYT-GKVKEGREIFESMKSKYLVEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 338 ~~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
+... |++++|...++.+.+ .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777765 22223 2566777777777777777777777766 2223 4666777777777777788
Q ss_pred HHHHHHHHHhccCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 414 LAEVAAKKLLQLEP-KNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 414 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+|...++++++..| +++..+..++..+...|+.+++..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88777777777777 7767777777777777777777777777654
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=8.2e-13 Score=123.75 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=140.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
....+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677777788888888888877643 366778888888888888888888888887652 3355677777788
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 415 (600)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888887642 446777888888888888888888888876 22 23577788888888888899999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99998888888888888888888898999999999888888764
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=5.6e-13 Score=124.90 Aligned_cols=178 Identities=11% Similarity=0.039 Sum_probs=136.8
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSA 337 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 337 (600)
+...+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345555566666666666666666665432 366777888888888888888888888887753 3456677778888
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 415 (600)
+...|++++|.++++++.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 888899999999998887752 446788889999999999999999999887 22 34577899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+++++++.|+++..+..+..+..
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHh
Confidence 99999999999998777666655443
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.48 E-value=3e-12 Score=127.99 Aligned_cols=244 Identities=9% Similarity=0.040 Sum_probs=179.2
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcc-hHHHHHHHHHHHHcCCCCchhhHHHHH
Q 007517 192 DATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLAS-LDHGRQVHAQLVRCQFDVDVYVASVLI 269 (600)
Q Consensus 192 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 269 (600)
...|+.+...+.+.|++++|+..|++.... .|+ ...|..+..++...|+ +++|...++.+++.. +.+..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666667777777777777776664 333 3455566666666675 777777777777665 44667777788
Q ss_pred HHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-cCCH
Q 007517 270 TMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSY-TGKV 344 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~ 344 (600)
.+|.+.|++++|...|+++.. .+...|..+..++.+.|++++|+..|+++++. .| +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 888888888888888877653 57788888888888899999999999998875 44 45577777777777 5555
Q ss_pred HHH-----HHHHHHhHhcCCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC------
Q 007517 345 KEG-----REIFESMKSKYLVEPKTEHYACMVDLLGRAG--QVEDAMKLIEAMPFEP-DAIIWGSLLGACRTHM------ 410 (600)
Q Consensus 345 ~~a-----~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g------ 410 (600)
++| ...+++..+.. +-+...|..+..+|.+.| ++++|.+.++++...| +...+..|...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 666 47777777642 345778888888898888 6889998888774445 4677888888888764
Q ss_pred --C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHh
Q 007517 411 --K-LDLAEVAAKKL-LQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 411 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 442 (600)
+ .++|..+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999988888877776643
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=5.1e-12 Score=116.60 Aligned_cols=208 Identities=11% Similarity=-0.061 Sum_probs=153.1
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLIT 270 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 270 (600)
+...|..+...+...|++++|+..|+++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34556666666777777777777776665532 223334555556
Q ss_pred HHHHcCCHHHHHhhhhhcC---CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHH
Q 007517 271 MYIKCGELVKGKLIFDNFA---SKDIVMWNSIISGYAQY-GLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 345 (600)
.|...|++++|...|+++. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 6666666666666665543 23566778888888888 999999999998887433444 456777888888999999
Q ss_pred HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 346 EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE--PDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 346 ~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
+|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999887752 345788899999999999999999999887 222 46677777788889999999999999999
Q ss_pred hccCCCCCchHHHH
Q 007517 423 LQLEPKNAGPYILL 436 (600)
Q Consensus 423 ~~~~p~~~~~~~~l 436 (600)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999986554443
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.1e-11 Score=118.70 Aligned_cols=228 Identities=11% Similarity=-0.029 Sum_probs=111.4
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh----hcchHHHHHHHHHHHHcCCCCchhhHH
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS----LASLDHGRQVHAQLVRCQFDVDVYVAS 266 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 266 (600)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34455556666666666666666666665521 22333334444444 444444444444444433 333333
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cC
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSY----TG 342 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g 342 (600)
.+..+|... ....+++++|++.|++..+.+ +...+..+-..+.. .+
T Consensus 79 ~lg~~~~~g---------------------------~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 79 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHHHhCC---------------------------CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 444444440 000444444444444444432 33334444444444 45
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDL 414 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~ 414 (600)
++++|.+.|++..+. + +...+..+...|.+ .+++++|.+.+++.--..+...+..+...+.. .+++++
T Consensus 129 ~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 129 DFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred CHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHH
Confidence 555555555544432 1 33444444555544 55555555555544111234445555555555 566666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007517 415 AEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 415 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 460 (600)
|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 205 A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 205 ALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666555544 3455556666665 566666666666555543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.8e-11 Score=116.98 Aligned_cols=191 Identities=11% Similarity=-0.018 Sum_probs=163.5
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS-KDIVMWNSIISGYAQ----YGLGEKSLKVFHEMFSSGVMPDDVTLVGVL 335 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 335 (600)
++..+..+...|...|++++|...|++..+ .+..++..+...|.. .+++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 455667778888888999999998887655 467788888999999 999999999999999876 667777888
Q ss_pred HHHhc----cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 336 SACSY----TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 336 ~a~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
..+.. .+++++|.+.|++..+. .+...+..+..+|.+ .|++++|.+.+++.-...+...+..+...+.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 88888 99999999999999874 378889999999999 9999999999998721236778888888888
Q ss_pred H----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007517 408 T----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS----QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 408 ~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g 460 (600)
. .+++++|...++++.+.+ ++..+..++.+|.. .+++++|.+.+++..+.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 8 899999999999999875 45788999999999 999999999999988765
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.47 E-value=2.7e-12 Score=118.29 Aligned_cols=111 Identities=11% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..++...|++++|...|+
T Consensus 98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~ 175 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYA 175 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666655432 345666666667777777777777777776654 555666666666777777777777777
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
...+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus 176 ~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 176 KALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 766532 334666666777777777777777666654
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=9.5e-12 Score=118.72 Aligned_cols=189 Identities=12% Similarity=0.017 Sum_probs=131.6
Q ss_pred CcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhccc--CChh----hHHHHH
Q 007517 129 NEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMRE--KDDA----TWSGMI 199 (600)
Q Consensus 129 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~----~~~~li 199 (600)
|...+......+...|++++|...++.+. +.+..++..+...|...|++++|...|++..+ ++.. +|..+.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34556677888999999999999999987 55667899999999999999999999998875 2333 388999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHH-HHHHHcCCH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLI-TMYIKCGEL 278 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~ 278 (600)
..|...|++++|+..|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+. ..|. .+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999998863 3355788888899999999999999988877653 33444444444 2222 2355
Q ss_pred HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q 007517 279 VKGKLIFDNFAS---KDIVMWNSIISGYAQYGL---GEKSLKVFHEMF 320 (600)
Q Consensus 279 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 320 (600)
++|.+.|+++.+ .+...|..+...+...|+ +++|+..|++..
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 555554444322 223344444444444444 444444444433
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=9.3e-13 Score=134.16 Aligned_cols=260 Identities=11% Similarity=-0.017 Sum_probs=163.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCccCc-----hhHhhHHHHHhhhcchHHHHHHHHHHHHc----C-CCCchhhHHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQKEGVRVNF-----PSLISVLSVCASLASLDHGRQVHAQLVRC----Q-FDVDVYVASV 267 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 267 (600)
+...+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+..+.+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3344444555555555555444431 221 23334444444455555555544444332 1 1122345556
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCC---------CCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFAS---------KDIVMWNSIISGYAQYGL-----------------GEKSLKVFHEMFS 321 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 321 (600)
+...|...|++++|...|++... ....+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66666667777777666665432 123466777777777777 7777777776543
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 007517 322 S----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-- 390 (600)
Q Consensus 322 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-- 390 (600)
. +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11121 235666777788888888888888877653211112 236788888899999999999888766
Q ss_pred --CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 391 --PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 391 --~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+-..+ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11111 4567888888999999999999999988764332 34788899999999999999999998875
Q ss_pred C
Q 007517 459 R 459 (600)
Q Consensus 459 ~ 459 (600)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.43 E-value=2.6e-12 Score=130.27 Aligned_cols=260 Identities=12% Similarity=0.009 Sum_probs=157.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCc-----hhHhhHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchhhHH
Q 007517 197 GMIKVYERKGYELEVIDLFTLMQKEGVRVNF-----PSLISVLSVCASLASLDHGRQVHAQLVRC----QFD-VDVYVAS 266 (600)
Q Consensus 197 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 266 (600)
.....+...|++++|+..|++....+ |+. ..+..+...+...|+++.|...+..+.+. +.+ ....++.
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 33344444444444444444444431 111 22333334444444444444444443321 111 1133455
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007517 267 VLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGL--------------------GEKSLKVFH 317 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 317 (600)
.+...|...|++++|...|++... ++ ..++..+...|...|+ +++|++.++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 566666666676666666655432 11 3466667777777777 777777777
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHH
Q 007517 318 EMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIE 388 (600)
Q Consensus 318 ~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~ 388 (600)
+.... +-.|. ..++..+...+...|++++|.+.+++..+...-.++ ...+..+...|...|++++|.+.++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 65431 11122 235666677777888888888888776543211122 3367788888888888888888887
Q ss_pred hC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHH
Q 007517 389 AM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 389 ~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 454 (600)
+. +..++ ..++..+...+...|++++|...+++++++.+.. +..+..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65 11112 4567778888888899999999988888764332 4467788888999999999998888
Q ss_pred HHHh
Q 007517 455 NMRK 458 (600)
Q Consensus 455 ~m~~ 458 (600)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=3.3e-12 Score=122.05 Aligned_cols=238 Identities=8% Similarity=-0.079 Sum_probs=170.3
Q ss_pred hcCCHHHHHHHHHhcccC-------ChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHH
Q 007517 173 QNGEVQKARVVFDQMREK-------DDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDH 245 (600)
Q Consensus 173 ~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 245 (600)
..|++++|...|+++.+. +..+|..+...|...|++++|+..|++..... +.+..++..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777776642 35567778888888888888888888887753 2346677777778888888888
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSG 323 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 323 (600)
|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. |+...+...+..+...|++++|+..+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888888888764 44577888888889999999999999887753 333333344445566799999999998887652
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 007517 324 VMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI 397 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 397 (600)
+++...+ .++..+...++.++|.+.+...... .|+ ...+..+...|.+.|++++|.+.|++. ...|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-
Confidence 3444444 4666777888889999998877542 232 578889999999999999999999987 555633
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007517 398 IWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222344566777788777665
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.42 E-value=3.2e-10 Score=120.95 Aligned_cols=226 Identities=11% Similarity=0.016 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH-HHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhh
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR-QVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN 287 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 287 (600)
+.+..+|++.... .+-+...|.....-+...|+.+.|. .+++..+.. ++.+..++-.++...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456678777765 2335566667777777888888996 999999874 356677788889999999999999999987
Q ss_pred cCC-------------C------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhc
Q 007517 288 FAS-------------K------------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS-G-VMPDDVTLVGVLSACSY 340 (600)
Q Consensus 288 ~~~-------------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~ 340 (600)
+.. | ....|-..+....+.|..+.|..+|.+..+. + ..+......+.+.-. .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-I 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-h
Confidence 753 2 1236888888888899999999999999886 2 122222222333322 2
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP----DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a 415 (600)
.++.+.|+++|+...+.+ +.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 356999999999998864 456777889999999999999999999987 2233 356899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHH
Q 007517 416 EVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
..+.+++.+..|+++ ....+++-|
T Consensus 561 ~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 999999999999874 444444444
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.7e-12 Score=126.17 Aligned_cols=198 Identities=13% Similarity=0.034 Sum_probs=136.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGL--------------------GEKS 312 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 312 (600)
..++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 34455566666666777666666655432 11 2366667777777777 7777
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHH
Q 007517 313 LKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 313 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 383 (600)
++.+++.... +..|. ...+..+...+...|++++|.+.++...+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777765432 11111 235666667778888888888888876543111111 33778888899999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHH
Q 007517 384 MKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 384 ~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 449 (600)
.+.+++. +..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9888876 11122 4567788888999999999999999988764432 34677899999999999999
Q ss_pred HHHHHHHHhC
Q 007517 450 AELRKNMRKR 459 (600)
Q Consensus 450 ~~~~~~m~~~ 459 (600)
.+.+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=9.9e-12 Score=124.24 Aligned_cols=225 Identities=9% Similarity=0.030 Sum_probs=190.8
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC-HHHHHhhhhhcCC---CCHHHHHHHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE-LVKGKLIFDNFAS---KDIVMWNSIISGY 303 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~ 303 (600)
..+..+..++...|++++|...+..+++.. +.+..+++.+...|.+.|+ +++|...|+++.. .+...|+.+...+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345566677788899999999999999976 5578889999999999997 9999999998764 5789999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh-cCCHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR-AGQVE 381 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~ 381 (600)
...|++++|+..|+++++. .| +...|..+..++...|++++|...++++.+.. +.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 45 45688888889999999999999999998852 4468899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC--------
Q 007517 382 DA-----MKLIEAM-PFEP-DAIIWGSLLGACRTHM--KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG-------- 444 (600)
Q Consensus 382 ~A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 444 (600)
+| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..++.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667665 3345 5778999999998888 689999999998 899999999999999999875
Q ss_pred -CchHHHHHHHHH-Hh
Q 007517 445 -RFHDVAELRKNM-RK 458 (600)
Q Consensus 445 -~~~~a~~~~~~m-~~ 458 (600)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=2e-11 Score=108.98 Aligned_cols=164 Identities=13% Similarity=0.100 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|...+....... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 4566777777888888888888888887764 444 4467777777788888888888888776642 3456677777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
...+...++++.|.+.+++. ...| +...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 78888888888888888776 2233 567788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhC
Q 007517 449 VAELRKNMRKR 459 (600)
Q Consensus 449 a~~~~~~m~~~ 459 (600)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88888887664
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.41 E-value=1.7e-12 Score=134.74 Aligned_cols=208 Identities=8% Similarity=0.032 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCH-HHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGEL-VKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 318 (600)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555565544432 45677888888889999999 999999987643 4678999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc--------CCHH
Q 007517 319 MFSSGVMPDDVTLVGVLSACSYT---------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA--------GQVE 381 (600)
Q Consensus 319 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 381 (600)
..+. .|+...+..+..++... |++++|.+.|++..+.. +.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 68878888888999999 99999999999998752 44688999999999999 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 382 DAMKLIEAM-PFEP----DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 382 ~A~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988 4455 7889999999999999999999999999999999999999999999999999999875543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.40 E-value=1.6e-12 Score=131.87 Aligned_cols=154 Identities=12% Similarity=-0.005 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 364 (600)
.+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|...++...+...-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 467777888888888888888888876421 0122 126667777888889999998888877643111111 5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCC
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP------KNA 430 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~ 430 (600)
.++..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 67888899999999999999998876 11122 55788888899999999999999999887632 224
Q ss_pred chHHHHHHHHHhcCCch
Q 007517 431 GPYILLSNIYASQGRFH 447 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~ 447 (600)
.++..++.+|...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56777888888877664
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=2e-10 Score=111.91 Aligned_cols=218 Identities=11% Similarity=0.038 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHh-------hhcch-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCA-------SLASL-------DHGRQVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
++|+..|++..... +-+...|......+. ..|+. ++|..+++..++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666776666531 223334444444443 24664 7888888888774224456688888888888
Q ss_pred cCCHHHHHhhhhhcCC--C-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCHHHHHH
Q 007517 275 CGELVKGKLIFDNFAS--K-DIV-MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC-SYTGKVKEGRE 349 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~ 349 (600)
.|++++|..+|++... | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999998887754 2 343 78888888999999999999999998753 23333444333322 23699999999
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 007517 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P---FEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLL 423 (600)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 423 (600)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988753 346888999999999999999999999887 2 355 46789999999999999999999999999
Q ss_pred ccCCCCC
Q 007517 424 QLEPKNA 430 (600)
Q Consensus 424 ~~~p~~~ 430 (600)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9999864
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=7.5e-12 Score=127.38 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHcCC-----------------HHHHHhhhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHH
Q 007517 263 YVASVLITMYIKCGE-----------------LVKGKLIFDNFAS-------K--DIVMWNSIISGYAQYGLGEKSLKVF 316 (600)
Q Consensus 263 ~~~~~li~~y~~~g~-----------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~ 316 (600)
.++..+...|...|+ +++|...|++... + ...+|..+...|...|++++|++.|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344555556666666 6666555554322 1 2346777788888888888888888
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC----ChHHHHHHHHHHhhcCCHHHHHHHH
Q 007517 317 HEMFSSGV-MPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKLI 387 (600)
Q Consensus 317 ~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~ 387 (600)
++..+... .++ ..++..+...+...|++++|.+.+++..+...-.. ....+..+...|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88765310 011 12667777888889999999998887765321011 1567888999999999999999998
Q ss_pred HhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 388 EAM-PF---EPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 388 ~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
++. .+ .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 876 11 112 446788888999999999999999999887663
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.33 E-value=4.8e-11 Score=106.55 Aligned_cols=167 Identities=12% Similarity=0.047 Sum_probs=141.8
Q ss_pred CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007517 260 VDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLS 336 (600)
Q Consensus 260 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 336 (600)
.+..+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+.+..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 3567888899999999999999999987653 478899999999999999999999999988752 334456666777
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 414 (600)
.+...++++.+.+.+....+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999999988752 456888999999999999999999999987 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCC
Q 007517 415 AEVAAKKLLQLEPKN 429 (600)
Q Consensus 415 a~~~~~~~~~~~p~~ 429 (600)
|...++++++++|++
T Consensus 160 A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHhCCccC
Confidence 999999999999976
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=3.2e-11 Score=118.41 Aligned_cols=135 Identities=12% Similarity=-0.005 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPD----DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~ 364 (600)
.++..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3455566666666666666666666543210 011 124555666667777777777777665442110111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
..+..+...|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 56777888888888888888887765 10112 446777888888899999999999998887654
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=4.5e-12 Score=123.38 Aligned_cols=238 Identities=13% Similarity=0.087 Sum_probs=124.3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc------C
Q 007517 191 DDATWSGMIKVYERKGYELEVIDLFTLMQKE-------GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC------Q 257 (600)
Q Consensus 191 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 257 (600)
+..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3456888888899999999999999888763 11222334445555555556666666555555432 1
Q ss_pred CCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007517 258 FDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GVMPD-DVT 330 (600)
Q Consensus 258 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 330 (600)
..+ ....+|..+...|...|++++|++.|+++.+. +-.|+ ...
T Consensus 106 ~~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 106 DHP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp TCH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCh------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 101 12234455555555555555555555555432 11122 224
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcC-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCC
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKY-----L-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P---------FEP 394 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---------~~p 394 (600)
+..+...+...|++++|.++++.+.+.. + .+.....+..+...|.+.|++++|.+.++++ . ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4455555666666666666666554420 0 1112345566666666666666666666554 0 011
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 395 D-------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 395 ~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
. ...+..+...+...+.+.++...++++....|..+..+..++.+|...|++++|.+++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111222223333445555556666666666677767777788888888888888888777654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=1e-10 Score=117.93 Aligned_cols=223 Identities=7% Similarity=-0.026 Sum_probs=141.5
Q ss_pred HHHhhhcchHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----C-----CHHHHHHH
Q 007517 235 SVCASLASLDHGRQVHAQLVRC----QFDV-DVYVASVLITMYIKCGELVKGKLIFDNFAS-----K-----DIVMWNSI 299 (600)
Q Consensus 235 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l 299 (600)
..+...|++++|...+..+.+. +-++ ...++..+...|...|++++|...|++... + ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666666553 1111 234566677777777777777776665432 1 13467777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhc---CCC-CCChHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSSGV-MPDD----VTLVGVLSACSYTGKVKEGREIFESMKSK---YLV-EPKTEHYACM 370 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~-~p~~~~~~~l 370 (600)
...|...|++++|++.|++..+... .++. .++..+...+...|++++|.+.+++..+. .+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7778888888888888877654210 1111 35666777777888888888888776551 112 2235667778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PF-----EPD-AIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 10 121 2234556666777777 66666666665 23333345677788888
Q ss_pred HhcCCchHHHHHHHHHHh
Q 007517 441 ASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~ 458 (600)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888888888888887764
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.29 E-value=7e-11 Score=127.58 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=138.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACM 370 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 370 (600)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...+..+..++.+.|++++|.+.|++..+.. +.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4567888888888888889999998888874 555 4578888888888999999999998887742 3347889999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 371 VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
..+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 4455 477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007517 449 VAELRKNMRK 458 (600)
Q Consensus 449 a~~~~~~m~~ 458 (600)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=5.2e-11 Score=120.02 Aligned_cols=227 Identities=10% Similarity=0.002 Sum_probs=154.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHc----CCcc-CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCC------CCchhhHHHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKE----GVRV-NFPSLISVLSVCASLASLDHGRQVHAQLVRCQF------DVDVYVASVL 268 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l 268 (600)
..+...|++++|+..|++.... +-.+ ...++..+...+...|+++.|...+....+... +....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3444555555555555555442 1011 123344445555555555555555555544210 1123466677
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGV 334 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~l 334 (600)
...|...|++++|...|++... ++ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7888888888888888876543 11 247888899999999999999999988762 23243 4578888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcC---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKY---LVEPKTEHYACMVDLLGRAGQ---VEDAMKLIEAMPFEPD-AIIWGSLLGACR 407 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 407 (600)
..++...|++++|...+++..+.. +-+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 889999999999999998876531 111123346778899999999 9999999999864444 346778889999
Q ss_pred HcCCHHHHHHHHHHHhccC
Q 007517 408 THMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~ 426 (600)
..|++++|...+++++++.
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.27 E-value=1.7e-10 Score=102.51 Aligned_cols=160 Identities=15% Similarity=0.072 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.+...+..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 3334444444445555555444443321 1233344444444555555555555555544431 234555555666666
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 007517 376 RAGQVEDAMKLIEAM-P-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (600)
..|++++|.+.++++ . .+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666655 1 12345566666667777777777777777777777777667777777777777777777777
Q ss_pred HHHHh
Q 007517 454 KNMRK 458 (600)
Q Consensus 454 ~~m~~ 458 (600)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=119.54 Aligned_cols=238 Identities=11% Similarity=0.060 Sum_probs=142.2
Q ss_pred ccchhHHHHHHHhcCCHHHHHHHHHhccc--------C---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc------CC
Q 007517 161 VVASNSMILGLGQNGEVQKARVVFDQMRE--------K---DDATWSGMIKVYERKGYELEVIDLFTLMQKE------GV 223 (600)
Q Consensus 161 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 223 (600)
..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|+..|++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35677888999999999999999998864 2 3456888999999999999999999998764 21
Q ss_pred cc-CchhHhhHHHHHhhhcchHHHHHHHHHHHHc------CCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHH
Q 007517 224 RV-NFPSLISVLSVCASLASLDHGRQVHAQLVRC------QFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMW 296 (600)
Q Consensus 224 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 296 (600)
.| ...++..+...+...|++++|...+..+.+. +..+. ...+|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 3455666777777888888888887776653 11111 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcC------CCCC-
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSS------GVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKY------LVEP- 362 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p- 362 (600)
..+...|...|++++|+++|+++.+. +..|+. .++..+..++...|++++|.++++++.+.. ...+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44444555555555555555554432 112221 234445555555566666655555554310 0011
Q ss_pred ------ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 363 ------KTEHYACMVDLLGRAGQVEDAMKLIEAMP-FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 363 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
....+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11223333344445556666666666652 233 3567888999999999999999999999887764
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.24 E-value=2.9e-09 Score=106.68 Aligned_cols=258 Identities=12% Similarity=0.013 Sum_probs=156.6
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCch----hHhhHHHHHhhhcchHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHH
Q 007517 201 VYERKGYELEVIDLFTLMQKEGVRVNFP----SLISVLSVCASLASLDHGRQVHAQLVRCQFD-VD----VYVASVLITM 271 (600)
Q Consensus 201 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~ 271 (600)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+.... .+ ..+...+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445555566655555554432111111 2233334444556666665555554432100 01 1234456666
Q ss_pred HHHcCCHHHHHhhhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHH
Q 007517 272 YIKCGELVKGKLIFDNFAS----------K-DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM--P--DDVTLVGVLS 336 (600)
Q Consensus 272 y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~ 336 (600)
|...|++++|...+++... + ....+..+...|...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 7777777777777765432 1 1245566777788888888888888887653211 1 1235666667
Q ss_pred HHhccCCHHHHHHHHHHhHhcCCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKYLVEPKTEHYA-----CMVDLLGRAGQVEDAMKLIEAM-PFEPD-----AIIWGSLLGA 405 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~ 405 (600)
.+...|++++|...++.......-......+. ..+..+...|++++|.+.+++. ...|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77888888888888887764311111111121 2345577889999999998887 22221 3356677788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKN------AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
+...|++++|...++++.+..+.. ...+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888899999999998887653221 13566788889999999999998888764
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=8.4e-10 Score=107.48 Aligned_cols=212 Identities=10% Similarity=0.053 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------HcCCH-------HHHHhhhhhcCC----CCHHHHHHHHHHHHh
Q 007517 244 DHGRQVHAQLVRCQFDVDVYVASVLITMYI-------KCGEL-------VKGKLIFDNFAS----KDIVMWNSIISGYAQ 305 (600)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 305 (600)
+.|..+++++++.. +.++.+|..++..+. +.|++ ++|..+|++... .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56778888888764 567778888887776 35886 899999987654 366799999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh-hcCCHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG-RAGQVED 382 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 382 (600)
.|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999997 466543 78888888899999999999999998742 345566655554433 3699999
Q ss_pred HHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 383 AMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL---EPK-NAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 383 A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
|.++|++. ... .+...|..++..+...|+.++|..+|+++++. .|+ ....+..++..+...|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 222 36788999999999999999999999999995 553 5567888899999999999999999998
Q ss_pred HhCC
Q 007517 457 RKRN 460 (600)
Q Consensus 457 ~~~g 460 (600)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8653
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.22 E-value=5.1e-10 Score=99.36 Aligned_cols=168 Identities=8% Similarity=-0.004 Sum_probs=143.9
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSAC 338 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 338 (600)
...+..+...|...|++++|...|+++.. .+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999998865 367889999999999999999999999998752 34566788888899
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988753 456888999999999999999999999987 22 346788999999999999999999
Q ss_pred HHHHHHhccCCCCCch
Q 007517 417 VAAKKLLQLEPKNAGP 432 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~ 432 (600)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.22 E-value=3.1e-10 Score=105.13 Aligned_cols=188 Identities=10% Similarity=-0.050 Sum_probs=99.4
Q ss_pred chhhHHHHHHHHHHcCCHHHHHhhhhhcCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 007517 261 DVYVASVLITMYIKCGELVKGKLIFDNFAS----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVL 335 (600)
Q Consensus 261 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll 335 (600)
|+..+..+...|.+.|++++|...|+.... ++...|..+...|...|++++|++.|++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345555555666666666666666654432 44455555556666666666666666666553 3332 3455555
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPKT-------EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---AIIWGSLLG 404 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~ 404 (600)
.++...|++++|.+.++...+.. +.+. ..|..+...+.+.|++++|.+.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55666666666666666655532 1223 33555555555666666666666554 33443 234444444
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 4432 23334455555544443333222 223344458888888887664
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.22 E-value=5.4e-09 Score=111.56 Aligned_cols=214 Identities=9% Similarity=-0.065 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHH-hhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 245 HGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGK-LIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
....++++.+.. ++....+|-..+..+.+.|+.++|. ++|++... ++...|-..+...-+.|++++|.++|+++.
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455677777775 3557788888888888999999996 99987653 466778888888999999999999999998
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-
Q 007517 321 SSG---------VMPD------------DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG- 378 (600)
Q Consensus 321 ~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g- 378 (600)
... -.|+ ...|...+....+.|..+.|+++|..+.+..+ .+....|...+.+-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 631 0142 23566677777788999999999999987411 223455555555555555
Q ss_pred CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHhcCCchHHHHHH
Q 007517 379 QVEDAMKLIEAM--PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK---NAGPYILLSNIYASQGRFHDVAELR 453 (600)
Q Consensus 379 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~ 453 (600)
+.+.|.++|+.. .+.-+...|...+......|+.+.|..+|++++...|+ ....+...+..-...|+.+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 599999999987 22346777888888888899999999999999998773 3345666777777889999999999
Q ss_pred HHHHhCC
Q 007517 454 KNMRKRN 460 (600)
Q Consensus 454 ~~m~~~g 460 (600)
+++.+.-
T Consensus 565 ~R~~~~~ 571 (679)
T 4e6h_A 565 KRFFEKF 571 (679)
T ss_dssp HHHHHHS
T ss_pred HHHHHhC
Confidence 9998753
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.20 E-value=6.2e-10 Score=103.09 Aligned_cols=204 Identities=10% Similarity=0.041 Sum_probs=159.9
Q ss_pred cCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHH
Q 007517 225 VNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIIS 301 (600)
Q Consensus 225 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 301 (600)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355777888888999999999999999999987547777777799999999999999999998754 36678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC---hHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSSGVMPD-D-------VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK---TEHYACM 370 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 370 (600)
.|...|++++|++.|++..+. .|+ . ..+..+-..+...|++++|.+.|++..+. .|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 999999999999999999875 454 3 34666777888999999999999998863 454 6778888
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 371 VDLLGRAGQV--EDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 371 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
...|...|+. ++|..+ . ..+...+..+. ....+.+++|...++++++++|+++.....+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~----~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPL----A-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGG----T-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776654 333222 1 22344444433 34456789999999999999999977766665543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=4.9e-10 Score=112.64 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=136.1
Q ss_pred HhhhcchHHHHHHHHHHHHcC--CC---CchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----C-----CHHHHHHHHH
Q 007517 237 CASLASLDHGRQVHAQLVRCQ--FD---VDVYVASVLITMYIKCGELVKGKLIFDNFAS-----K-----DIVMWNSIIS 301 (600)
Q Consensus 237 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 301 (600)
+...|+++.|...+..+.+.. .+ ....++..+...|...|+++.|...+++... + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445566666666666665431 11 1234556666777777777777666655432 1 1346677777
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CCCCChHHHHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY---LVEPKTEHYACMVDL 373 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p~~~~~~~li~~ 373 (600)
.|...|++++|++.|++..+. +-.+. ..++..+..++...|++++|.+.+++..+.. +.+....++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 777888888888877776542 11111 2355666677777888888888877766510 112235667777888
Q ss_pred HhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 374 LGRAGQVEDAMKLIEAM----PF--EPD-AIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
|.+.|++++|.+.+++. +. .|. ...+..+...+...++ ..+|...+++. ...|.....+..++..|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 88888888888887765 11 122 3344555555666666 66666666652 22233335566788888888
Q ss_pred CCchHHHHHHHHHHh
Q 007517 444 GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 g~~~~a~~~~~~m~~ 458 (600)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877653
No 81
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=5.6e-10 Score=115.69 Aligned_cols=177 Identities=9% Similarity=-0.012 Sum_probs=155.4
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLG-EKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
++++...++.... .+...|..+...|...|++ ++|++.|++..+. .|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555666655432 4788999999999999999 9999999999875 454 6688889999999999999999999
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc--------CCHH
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRA---------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH--------MKLD 413 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 413 (600)
...+. .|+...+..+...|... |++++|.+.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99864 57889999999999999 9999999999987 3344 588899999999998 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 414 LAEVAAKKLLQLEP---KNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 414 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+..++++++++| +++..+..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 89999999999999999999999999998764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.15 E-value=5.1e-09 Score=105.17 Aligned_cols=225 Identities=11% Similarity=0.021 Sum_probs=154.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCc-cC----chhHhhHHHHHhhhcchHHHHHHHHHHHHcCC-----C-CchhhHHHH
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVR-VN----FPSLISVLSVCASLASLDHGRQVHAQLVRCQF-----D-VDVYVASVL 268 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 268 (600)
..+...|++++|+..|++....... +| ..++..+...+...|+++.|...+....+... . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3445566666666666665542111 11 23445555556666666666666665554210 1 124456677
Q ss_pred HHHHHHcCCHHHHHhhhhhcCC-----C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007517 269 ITMYIKCGELVKGKLIFDNFAS-----K----DIVMWNSIISGYAQYGLGEKSLKVFHEMFS-----SGVMPDDVTLVGV 334 (600)
Q Consensus 269 i~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 334 (600)
...|...|++++|...|++... + ...+++.+...|...|++++|++.|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 7888888888888888776543 1 235678888899999999999999998876 32 2224577778
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCC---CCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLV---EPKTEHYACMVDLLGRAGQ---VEDAMKLIEAMPFEPD-AIIWGSLLGACR 407 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 407 (600)
..++...|++++|..++++..+...- +.....+..+...|...|+ +++|...+++.+..|+ ...+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 88899999999999999988764321 2224567777888888888 9999999998754444 345667888899
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 007517 408 THMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~ 425 (600)
..|++++|...++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988763
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=6.9e-09 Score=103.93 Aligned_cols=259 Identities=10% Similarity=-0.016 Sum_probs=160.6
Q ss_pred HHHHhcCCHHHHHHHHHhccc----CCh----hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc-cC----chhHhhHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMRE----KDD----ATWSGMIKVYERKGYELEVIDLFTLMQKEGVR-VN----FPSLISVLS 235 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~ 235 (600)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++....... ++ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344556666666666555332 111 13445556666677777777777665542111 11 112344455
Q ss_pred HHhhhcchHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C------CHHHHHHHH
Q 007517 236 VCASLASLDHGRQVHAQLVRC----QFD--V-DVYVASVLITMYIKCGELVKGKLIFDNFAS--K------DIVMWNSII 300 (600)
Q Consensus 236 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~------~~~~~~~li 300 (600)
.+...|++++|...+....+. +.+ | ....+..+...|...|++++|...+++... + ...+|..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566677777777777666542 211 2 234555677778888888888888776432 1 235677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHHhccCCHHHHHHHHHHhHhcCCCCC--ChHHHHHHHH
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLV-----GVLSACSYTGKVKEGREIFESMKSKYLVEP--KTEHYACMVD 372 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~li~ 372 (600)
..+...|++++|...+++.....-.++. ..+. .....+...|+.++|...++.......-.+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999887653212211 1111 223346688999999999988765321111 1235677888
Q ss_pred HHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 007517 373 LLGRAGQVEDAMKLIEAM-------PFEPDA-IIWGSLLGACRTHMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 427 (600)
.+...|++++|.+.+++. +..++. ..+..+..++...|+.++|...+++++++.+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 899999999999988876 211122 2566667778889999999999999887543
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=2.2e-09 Score=103.58 Aligned_cols=187 Identities=10% Similarity=-0.017 Sum_probs=124.5
Q ss_pred HHHHHcCCHHHHHhhhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 007517 270 TMYIKCGELVKGKLIFDNFAS-------K--DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV---MPD--DVTLVGVL 335 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll 335 (600)
..|...|++++|...|++... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666654432 1 135677778888888888888888877654210 111 24677777
Q ss_pred HHHhcc-CCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHH
Q 007517 336 SACSYT-GKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---A-----IIWGS 401 (600)
Q Consensus 336 ~a~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~-----~~~~~ 401 (600)
.++... |++++|...|++..+...-..+ ..++..+...|.+.|++++|.+.|++. ...|+ . ..|..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 888885 9999999999887653210111 356888999999999999999999887 22222 1 15677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGP-----YILLSNIYA--SQGRFHDVAELRKNM 456 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 456 (600)
+..++...|+++.|...+++.++++|+.+.. +..++.+|. ..+++++|.+.++.+
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 8888999999999999999999999986543 344566664 456777777776543
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=4.8e-10 Score=107.11 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=112.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS-----------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GV 324 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 324 (600)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34445555555555665555555554321 12345666677777777777777777776543 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC----C--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-----
Q 007517 325 MPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY----L--VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-P----- 391 (600)
Q Consensus 325 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~----- 391 (600)
.|+ ..++..+...+...|++++|..+++++.+.. + .+.....+..+...|.+.|++++|.+.+++. .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 122 3456666677777778887777777765530 0 1122556777778888888888888877765 1
Q ss_pred ----CCCC-HHHHHHHHHHHHHcCC------HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 392 ----FEPD-AIIWGSLLGACRTHMK------LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 392 ----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+. ...|..+.......+. +..+...++......|..+..+..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2233333333333222 22333333333333455556788889999999999999998887764
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.03 E-value=1.5e-09 Score=117.16 Aligned_cols=165 Identities=10% Similarity=0.079 Sum_probs=136.4
Q ss_pred CCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007517 259 DVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGV 334 (600)
Q Consensus 259 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 334 (600)
+.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|++.|++..+. .|+ ...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34466788888888888999999888887653 46788999999999999999999999998874 565 5578888
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 412 (600)
..++...|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|.+.|++. .+.| +...|..|...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 889999999999999999888742 335788999999999999999999999887 4455 477889999999999999
Q ss_pred HHHHHHHHHHhccCC
Q 007517 413 DLAEVAAKKLLQLEP 427 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p 427 (600)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=5.6e-09 Score=100.72 Aligned_cols=166 Identities=9% Similarity=0.007 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC----H
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS-----KD----IVMWNSIISGYAQY-GLGEKSLKVFHEMFSSGVM-PD----D 328 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-p~----~ 328 (600)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444455555555555555555544322 01 34677777778775 8888888888877652100 01 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-----
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT-----EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAI----- 397 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~----- 397 (600)
.++..+...+...|++++|...|+...+...-.+.. ..|..+..+|...|++++|...+++. .+.|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 356677778888888888888888877642111111 15677778888888888888888877 4444322
Q ss_pred -HHHHHHHHHH--HcCCHHHHHHHHHHHhccCCCC
Q 007517 398 -IWGSLLGACR--THMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 398 -~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
.+..++.++. ..+++++|+..++++..++|..
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2444555554 3466888888888877777755
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.01 E-value=2.3e-08 Score=94.57 Aligned_cols=204 Identities=10% Similarity=0.029 Sum_probs=119.1
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--K-D---IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPD-DVTLVG 333 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ 333 (600)
...+-.+...+.+.|++++|...|+.+.. | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444455555566666666666655543 1 2 34555555566666666666666666555311 111 123333
Q ss_pred HHHHHhc--------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007517 334 VLSACSY--------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGA 405 (600)
Q Consensus 334 ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~ 405 (600)
+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4444444 555566666655555432 11111221111111000000 1113567788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCceeEEEe
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQ----------GRFHDVAELRKNMRKRNVIKPPGCSWIEV 472 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s~~~~ 472 (600)
+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...+++..+.. |.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p~------ 227 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----PD------ 227 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----TT------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----CC------
Confidence 9999999999999999999999854 4688899999877 89999999999987642 32
Q ss_pred CCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHH
Q 007517 473 EKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLRE 506 (600)
Q Consensus 473 ~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~ 506 (600)
+|........+.++...+.+
T Consensus 228 --------------~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 228 --------------SPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHHHHHHHHH
Confidence 55666666667776666544
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=2.4e-07 Score=87.94 Aligned_cols=163 Identities=14% Similarity=0.040 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC-----ChH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP-----KTE 365 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p-----~~~ 365 (600)
+..++..+..++...|++++|++++.+.+..|-.++ ...+..++..+.+.|+.+.|.+.++.|.+. .| +..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~ 175 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNE 175 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchH
Confidence 334444555555566666666666665544332122 234444555556666666666666665542 34 133
Q ss_pred HHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----------CCCCC
Q 007517 366 HYACMVDL--LGRAG--QVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQL----------EPKNA 430 (600)
Q Consensus 366 ~~~~li~~--~~~~g--~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----------~p~~~ 430 (600)
+...|..+ ....| +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+. +|+++
T Consensus 176 ~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 176 MILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 33333333 22223 566666666665 22343222233333556666666666666655554 35565
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++..++......|+ +|.+++.++++.
T Consensus 256 ~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 256 TFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 555555555555554 566666666553
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=4.8e-08 Score=92.71 Aligned_cols=239 Identities=10% Similarity=0.008 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHHHHhcccCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHH
Q 007517 172 GQNGEVQKARVVFDQMREKDD-ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVH 250 (600)
Q Consensus 172 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 250 (600)
.-.|.+..++.-..++...+. ..---+.++|...|++.... .-.|....+..+. .+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345667666665555543222 22233446777777765321 1122222222222 222222 55666
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007517 251 AQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-----KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM 325 (600)
Q Consensus 251 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 325 (600)
+..+..+ +++......+..+|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+. .
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--I 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 6666554 44555556788889999999999999988733 35677888899999999999999999999874 6
Q ss_pred C-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---
Q 007517 326 P-----DDVTLVGVLSAC--SY--TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF--- 392 (600)
Q Consensus 326 p-----~~~t~~~ll~a~--~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~--- 392 (600)
| +..+...+..++ .. .++.++|..+|+++..++ |+...-..+..++.+.|++++|.+.++.+ ..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 356666666663 22 348999999999998753 55333334444899999999999999765 21
Q ss_pred -------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 393 -------EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 393 -------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.| |+.+...++......|+ .|.++++++.+..|++|..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 45666677767667787 8899999999999998643
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.4e-08 Score=83.03 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHh
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLG 375 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~ 375 (600)
|..+...|...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++.+.+.. +.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~------------- 67 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR------------- 67 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CC-------------
Confidence 4445555555556666666555555432 1223344444444444555555555555444321 12
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 376 RAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.+++
T Consensus 68 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 68 -------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp -------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 2334444444444555555555555555555554444455555555555555555555554
Q ss_pred HH
Q 007517 456 MR 457 (600)
Q Consensus 456 m~ 457 (600)
+.
T Consensus 129 ~~ 130 (136)
T 2fo7_A 129 AL 130 (136)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=1.5e-08 Score=96.64 Aligned_cols=162 Identities=13% Similarity=0.070 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS-----------KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS------GVMP 326 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p 326 (600)
++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 344444444445555555444443321 12345666666667777777777777666543 1122
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC------CCCC-ChHHHHHHHHHHhh------cCCHHHHHHHHHhCC-
Q 007517 327 D-DVTLVGVLSACSYTGKVKEGREIFESMKSKY------LVEP-KTEHYACMVDLLGR------AGQVEDAMKLIEAMP- 391 (600)
Q Consensus 327 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~------~~~p-~~~~~~~li~~~~~------~g~~~~A~~~~~~m~- 391 (600)
+ ..++..+..++...|++++|.++++++.+.. ...+ ....+..+...+.. ...+.++...++..+
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2 2356666667777777777777777665420 0111 22233333333332 223445555555553
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 392 FEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 392 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
..| ...++..+...+...|++++|...++++++.
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223 2456888888899999999999999988765
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=2.1e-08 Score=83.41 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS 442 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 442 (600)
..|..++..|.+.|++++|.++++++ .. +.+...|..+...+...|++++|...++++.+..|.++..+..++.+|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677888889999999999999877 22 34677888899999999999999999999999999998899999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 007517 443 QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 443 ~g~~~~a~~~~~~m~~~g 460 (600)
.|++++|.++++.+.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD 99 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhC
Confidence 999999999999987643
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.91 E-value=1.5e-09 Score=93.18 Aligned_cols=141 Identities=9% Similarity=-0.014 Sum_probs=102.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ 379 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 379 (600)
..+...|++++|+..+++.... .|+. ..+..+...|...|++++|.+.|++..+.. +.+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCc
Confidence 3344556777777777776532 3332 345556677777888888888888777642 3457788888888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 380 VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEV-AAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
+++|...|++. .+.| +...|..+...+...|+.++|.. .++++++++|+++..|.....++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888876 4445 47778888888888888876655 4689999999998888888888887775
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.90 E-value=2.4e-08 Score=94.45 Aligned_cols=199 Identities=13% Similarity=0.051 Sum_probs=142.1
Q ss_pred CchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--C----CHHHH
Q 007517 226 NFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVD---VYVASVLITMYIKCGELVKGKLIFDNFAS--K----DIVMW 296 (600)
Q Consensus 226 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~~ 296 (600)
+...+......+...|++++|...+..+++.. +.+ ...+..+..+|.+.|++++|...|+.... | ...++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44566677778889999999999999999875 223 56778899999999999999999998754 2 24567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHH
Q 007517 297 NSIISGYAQ--------YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYA 368 (600)
Q Consensus 297 ~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 368 (600)
..+...+.. .|++++|+..|++..+. .|+..... .+...+..+... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD-------------DATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH-------------HHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH-------------HHHHHHHHHHHH-----HHHHHH
Confidence 788888888 99999999999999875 45432111 111111111111 122356
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHhccCCCCCch-
Q 007517 369 CMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTH----------MKLDLAEVAAKKLLQLEPKNAGP- 432 (600)
Q Consensus 369 ~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~- 432 (600)
.+...|.+.|++++|...|+++ ...|+ ...+..+..++... |++++|...++++++..|+++..
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788899999999999998877 22232 44677777777755 88999999999999999998543
Q ss_pred --HHHHHHHHHhcCC
Q 007517 433 --YILLSNIYASQGR 445 (600)
Q Consensus 433 --~~~l~~~~~~~g~ 445 (600)
...+..++...|+
T Consensus 233 ~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 233 TAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 3334444433333
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.1e-07 Score=87.71 Aligned_cols=179 Identities=9% Similarity=-0.006 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC--CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS--KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV----TLV 332 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 332 (600)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877653 21 246666777777888888888888877764 33321 222
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007517 333 GVLSACSY------------------TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEP 394 (600)
Q Consensus 333 ~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 394 (600)
.+..++.. .|+.++|...|+.+.+.+ +-+...+.++..+. .+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----HHHHHH----------
Confidence 23333322 344555555555555432 11111111111000 000000
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA---GPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113455678889999999999999999999875 468889999999999999999999988764
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=7.1e-08 Score=92.63 Aligned_cols=172 Identities=9% Similarity=0.010 Sum_probs=132.9
Q ss_pred HHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC
Q 007517 281 GKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYL 359 (600)
Q Consensus 281 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~ 359 (600)
....+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+..++...|++++|...++.+...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333444444445566777778888899999999999998874 454 456777888888999999999999888664
Q ss_pred CCCChHHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC--CchHH
Q 007517 360 VEPKTEHYACM-VDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN--AGPYI 434 (600)
Q Consensus 360 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 434 (600)
.|+....... ...+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ +..+.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554433333 33466777888888888776 3334 57889999999999999999999999999999987 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
.++.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998877653
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.8e-07 Score=85.28 Aligned_cols=161 Identities=11% Similarity=-0.055 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHhcCCCCCChHH
Q 007517 291 KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG----KVKEGREIFESMKSKYLVEPKTEH 366 (600)
Q Consensus 291 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 366 (600)
.+..++..+...|...+++++|+++|++..+.| +...+..+-..+.. + +.++|.++|+...+. .++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466777777777878888888888888887765 44555556666666 6 788898888888653 35777
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 367 YACMVDLLGR----AGQVEDAMKLIEAM-PFEPD---AIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 367 ~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+..|..+|.. .+++++|.+.|++. ...|+ +..+..|...|.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7888888877 78999999999887 33343 7788888888888 78999999999999888 66667889
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCC
Q 007517 435 LLSNIYASQ-G-----RFHDVAELRKNMRKRN 460 (600)
Q Consensus 435 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~g 460 (600)
.|+.+|... | ++++|.+++++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999764 3 8999999999988776
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=4.5e-08 Score=106.08 Aligned_cols=168 Identities=9% Similarity=-0.048 Sum_probs=135.9
Q ss_pred HHcCCHHHHHhhhhhcC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc
Q 007517 273 IKCGELVKGKLIFDNFA-----------SKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSY 340 (600)
Q Consensus 273 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 340 (600)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 66788999998888775 346678888888999999999999999998874 44 45577777788888
Q ss_pred cCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVA 418 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 418 (600)
.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888742 3357888889999999999999 8888876 3344 577888899999999999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 419 AKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 419 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
++++++++|+++..+..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999988888889998877665
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=1.3e-06 Score=90.31 Aligned_cols=341 Identities=10% Similarity=-0.004 Sum_probs=161.5
Q ss_pred CCHHHHHHHHccCC--CCCcchHHHHHHHHHhcCC-hHHHHHHHhhCC------CCCcccHHHHHHHHH----hCCChHH
Q 007517 51 SRIDDARRLFDMMP--EKDVVAQTNMVLGYCQDGR-VDEGREIFDEMP------KKNVISWTTMISGYV----NNNRIDV 117 (600)
Q Consensus 51 g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~------~~~~~~~~~li~~~~----~~g~~~~ 117 (600)
|+++.++.+|++.. .|++..|...+....+.+. .+....+|+... ..+...|...+..+. .+++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 67777777777766 3566677766666655542 234444555432 124455666555433 2345566
Q ss_pred HHHHHhhcCC-CCcchHHHHHHHHhc---CCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhccc----
Q 007517 118 ARKLFEVMPE-KNEVSWTAMLMGYTQ---CGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMRE---- 189 (600)
Q Consensus 118 A~~~~~~m~~-p~~~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---- 189 (600)
+..+|++... |... +..+-..|.. ..+...+..+... + .+.+..|+.+++.+..
T Consensus 108 vR~iy~rAL~~P~~~-~~~lw~~Y~~fE~~~~~~~~~~~~~~---------------~--~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 108 IRNGYMRALQTPMGS-LSELWKDFENFELELNKITGKKIVGD---------------T--LPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHHHHHTSCCTT-HHHHHHHHHHHHHHHCHHHHHHHHHH---------------H--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhChhhh-HHHHHHHHHHHHHHhccccHHHHHHH---------------H--hHHHHHHHHHHHHHHHHHhh
Confidence 6667766665 3211 1122111111 0111111111111 0 1122333333333221
Q ss_pred CChhhHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 007517 190 KDDATWSGMIKVYERKG--Y-----ELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDV 262 (600)
Q Consensus 190 ~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 262 (600)
.+...|...+.--..++ - .+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++..++. |.+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcH
Confidence 13345555444322221 1 234566777776642 334455655666666777888888888887777 3333
Q ss_pred hhHHHHHHHHHHcCCHHHHH-hhhhhcC----------C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007517 263 YVASVLITMYIKCGELVKGK-LIFDNFA----------S--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~-~~~~~~~----------~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 329 (600)
..+. .|+...+.++.. .+.+... . .....|-..+....+.+..+.|..+|++. ... .++..
T Consensus 247 ~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 247 FLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 3222 222221111110 1111100 0 01234555555555556666777777666 211 11222
Q ss_pred HHHH--HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007517 330 TLVG--VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~--ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 407 (600)
.|.. .+... ..++.+.|+.+|+...+.+ +.++..+...++...+.|+.+.|..+|+++. .....|...+.--.
T Consensus 321 v~i~~A~lE~~-~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 321 VFIYCAFIEYY-ATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 2221 11111 1225666777777666643 2234445556666666667777777776652 24555666665555
Q ss_pred HcCCHHHHHHHHHHHh
Q 007517 408 THMKLDLAEVAAKKLL 423 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~ 423 (600)
.+|+.+.+..++++..
T Consensus 396 ~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 396 MVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5566555555555443
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.80 E-value=1.2e-08 Score=87.53 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=100.5
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL 412 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 412 (600)
..+...|++++|...++..... .|+ ...+-.+...|.+.|++++|.+.|++. .+.| +...|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 3455678899999998877542 343 455677999999999999999999987 4455 588899999999999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHh
Q 007517 413 DLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAEL-RKNMRK 458 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 458 (600)
++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765 466655
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=2.6e-07 Score=100.15 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=147.1
Q ss_pred hhhcchHHHHHHHHHHH--------HcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhc
Q 007517 238 ASLASLDHGRQVHAQLV--------RCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQY 306 (600)
Q Consensus 238 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 306 (600)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 33 245667888889999999999999999988764 4788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMK 385 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 385 (600)
|++++|++.|++..+. .|+ ...+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875 454 4577888888999999999 99999988742 3467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHhccCCCCCch
Q 007517 386 LIEAM-PFEPD-AIIWGSLLGACRTHMK-----LDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 386 ~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.|++. ...|+ ...|..+..++...++ .+...+..+.+.++.+.++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 99998 56776 5567777777766555 344444445555555555443
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.5e-07 Score=85.52 Aligned_cols=126 Identities=10% Similarity=0.056 Sum_probs=97.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMP-DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA 377 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 377 (600)
+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|++..+.. +.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 888899999999999999999875 45 45678888888999999999999999998752 34588888899888766
Q ss_pred CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 378 GQ--VEDAMKLIEAMPFEPDA--IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 378 g~--~~~A~~~~~~m~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|. .+.+...++... .|+. ..|..+..++...|++++|...+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 445666666653 3443 345556667778899999999999999999975
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=2.3e-07 Score=90.06 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=155.7
Q ss_pred HcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 204 RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 204 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~--~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS--F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC--S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc--c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877642 111 1 11146777777766554 456788899999988
Q ss_pred hhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHH
Q 007517 284 IFDNFAS-----KD----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSG---VMPD--DVTLVGVLSACSYTGKVKEGRE 349 (600)
Q Consensus 284 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 349 (600)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876543 12 3578888999999999999999999875421 1222 2467777888888 99999999
Q ss_pred HHHHhHhcCCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHHcCCHHHHHH
Q 007517 350 IFESMKSKYLVEP----KTEHYACMVDLLGRAGQVEDAMKLIEAM-PF---EPD----AIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 350 ~~~~~~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
.|++..+...-.. ...++..+...|.+.|++++|.+.|++. .+ .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998765321011 1467888999999999999999999877 11 122 2356667777888899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCCchHHHH
Q 007517 418 AAKKLLQLEPKNAGP-----YILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 418 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 451 (600)
.+++.+ +.|..... ...++.+| ..|+.+...+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99976443 33455555 5677665555
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=1.7e-07 Score=99.54 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=121.7
Q ss_pred cCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHH
Q 007517 275 CGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREI 350 (600)
Q Consensus 275 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 350 (600)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3677888888877654 35778888999999999999999999998875 444 56788888889999999999999
Q ss_pred HHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHhcc
Q 007517 351 FESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---MKLDLAEVAAKKLLQL 425 (600)
Q Consensus 351 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 425 (600)
+++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988752 445788999999999999999999999987 3334 577888999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 007517 426 EPKNAGPYILLS 437 (600)
Q Consensus 426 ~p~~~~~~~~l~ 437 (600)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777665
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.74 E-value=8.6e-08 Score=101.84 Aligned_cols=150 Identities=15% Similarity=0.013 Sum_probs=116.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.|++++|++.|++..+. .|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998764 454 5678888889999999999999999998742 345889999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHhC
Q 007517 385 KLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ---GRFHDVAELRKNMRKR 459 (600)
Q Consensus 385 ~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~ 459 (600)
+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3334 5788999999999999999999999999999999999999999999999 9999999999887654
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.72 E-value=1.3e-07 Score=83.32 Aligned_cols=156 Identities=9% Similarity=0.020 Sum_probs=95.2
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
...+...+.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++.... .|+.. +..+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHH---
Confidence 34455556666666666666666553 24556666666666666666666666655432 23221 11111000
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAA 419 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 419 (600)
. +.+.+...+|.+.+++. ...| +...+..+...+...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 00111112234444443 2234 4777888888888888999999999
Q ss_pred HHHhccCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007517 420 KKLLQLEPKN--AGPYILLSNIYASQGRFHDVAELRKNMR 457 (600)
Q Consensus 420 ~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 457 (600)
+++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9888888864 4578888889999999999888887654
No 108
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.70 E-value=4.6e-08 Score=83.50 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4667778888999999999999999887 3334 6888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.5e-07 Score=77.77 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344555666666666666666666655 2223 45666666666666777777777777777777766666667777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.+++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777776666654
No 110
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=7.2e-08 Score=82.32 Aligned_cols=100 Identities=8% Similarity=-0.005 Sum_probs=88.4
Q ss_pred CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 360 VEP-KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 360 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
+.| +...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 3667788888999999999999999988 3345 688899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHhC
Q 007517 437 SNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 437 ~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+.+|...|++++|.+.+++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998764
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=1.6e-06 Score=83.43 Aligned_cols=162 Identities=7% Similarity=-0.030 Sum_probs=121.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV----TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHY 367 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~ 367 (600)
...+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 334677888999999999999987642 223321 2334566677778999999999988763211223 3468
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-----CC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------Cch
Q 007517 368 ACMVDLLGRAGQVEDAMKLIEAM-----PF---EPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGP 432 (600)
Q Consensus 368 ~~li~~~~~~g~~~~A~~~~~~m-----~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~ 432 (600)
+.+...|...|++++|.+.++++ .. .+. ..++..+...|...|++++|...+++++++.+.. +..
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999988876 11 122 3468889999999999999999999999864332 467
Q ss_pred HHHHHHHHHhcCC-chHHHHHHHHHHh
Q 007517 433 YILLSNIYASQGR-FHDVAELRKNMRK 458 (600)
Q Consensus 433 ~~~l~~~~~~~g~-~~~a~~~~~~m~~ 458 (600)
|..++.+|...|+ +++|.+.+++..+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999995 5999999887754
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=2.3e-07 Score=81.79 Aligned_cols=157 Identities=13% Similarity=0.063 Sum_probs=96.2
Q ss_pred hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCC--CHHHHHHHHHH-HHh
Q 007517 229 SLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASK--DIVMWNSIISG-YAQ 305 (600)
Q Consensus 229 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~-~~~ 305 (600)
.+......+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|++.... +...+..+... +.+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 45566677889999999999999887764 456788899999999999999999999998653 34333222111 112
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAM 384 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 384 (600)
.+...+|+..|++..+. .|+ ...+..+..++...|++++|...|+.+.+...-..+...+..+...|...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22223456666665543 333 344555555555666666666666655543110112335555555555555555555
Q ss_pred HHHH
Q 007517 385 KLIE 388 (600)
Q Consensus 385 ~~~~ 388 (600)
..|+
T Consensus 165 ~~y~ 168 (176)
T 2r5s_A 165 SKYR 168 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=6.3e-07 Score=86.22 Aligned_cols=165 Identities=6% Similarity=-0.046 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCC--CCCC--h
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDD-----VTLVGVLSACSYTGKVKEGREIFESMKSKYL--VEPK--T 364 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--~~p~--~ 364 (600)
..+...+..+...|++++|++.+.+..+.....+. ..+..+...+...|++++|...++...+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 45556677888999999999999988775322111 1233445566788899999999988765321 1122 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC------C
Q 007517 365 EHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD-----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK------N 429 (600)
Q Consensus 365 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 429 (600)
..|+.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...+++++++.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58889999999999999999998876 11222 257888999999999999999999999876432 1
Q ss_pred CchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007517 430 AGPYILLSNIYASQGRFHDV-AELRKNMRK 458 (600)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 458 (600)
+.+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45688899999999999999 777776653
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.64 E-value=6e-07 Score=81.61 Aligned_cols=124 Identities=13% Similarity=0.006 Sum_probs=98.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTH 409 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~ 409 (600)
..+...+...|++++|...|++. ++|+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 33444566677777777777655 2456777888888888888888888888776 222 3577888888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNA----------------GPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
|++++|...++++++..|.++ ..+..++.+|...|++++|.+.+++..+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999888776 788999999999999999999999987653
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=4.4e-06 Score=79.97 Aligned_cols=219 Identities=9% Similarity=0.066 Sum_probs=102.5
Q ss_pred cCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc--chHHHHHHHHHHHHcCCCCchhhHHHHHHHH----HHc--
Q 007517 205 KGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA--SLDHGRQVHAQLVRCQFDVDVYVASVLITMY----IKC-- 275 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 275 (600)
....++|++++.++... .|+..| ++.--.++...+ +++++...+..++... +-+..+++.--..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 34446788888777764 455443 333334444455 6666666666666654 33334444333333 333
Q ss_pred -CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------
Q 007517 276 -GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGE--KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK------ 343 (600)
Q Consensus 276 -g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------ 343 (600)
++++++..+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...++.-.....+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 455555555555432 34555555555555555555 5555555555432 1223333333333333333
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCCHHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED-AMKLIEAM-PF----EPDAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
++++.+.++.+.... +-|...|+.+..++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 444444444444321 2334444444444444444222 22333333 11 1233444444444444444444444
Q ss_pred HHHHHhc-cCCCC
Q 007517 418 AAKKLLQ-LEPKN 429 (600)
Q Consensus 418 ~~~~~~~-~~p~~ 429 (600)
+++.+.+ .+|..
T Consensus 280 ~~~~l~~~~Dpir 292 (306)
T 3dra_A 280 VYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHTTCGGG
T ss_pred HHHHHHhccChHH
Confidence 4444443 34443
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=1.2e-06 Score=83.87 Aligned_cols=157 Identities=6% Similarity=-0.057 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHH
Q 007517 263 YVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVG-VLSAC 338 (600)
Q Consensus 263 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~ 338 (600)
.....+...+.+.|++++|...|++... .+...+..+...|.+.|++++|+..+++.... .|+...... ....+
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence 3334444444455555555555544322 23444555555555555555555555544332 233321111 11123
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHHcCCHHH
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD---AIIWGSLLGACRTHMKLDL 414 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 414 (600)
...+..++|...+++..... +.+...+..+...|...|++++|.+.++++ ...|+ ...+..|+..+...|+.+.
T Consensus 196 ~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 33444444555555544431 233555555555555555555555555554 11222 4455555555555565555
Q ss_pred HHHHHHHHh
Q 007517 415 AEVAAKKLL 423 (600)
Q Consensus 415 a~~~~~~~~ 423 (600)
|...+++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.62 E-value=1.2e-06 Score=79.48 Aligned_cols=143 Identities=8% Similarity=-0.087 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 007517 267 VLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE 346 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 346 (600)
.+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHH
Confidence 344445555555555555555554455555555555555555555555555554421 1222334444444444444444
Q ss_pred HHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 347 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
|.+.|+...+...-.+... +...| +...|+ ...|..+..++...|++++|...+++++++
T Consensus 90 A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 4444444443210000000 00000 012232 367888888999999999999999999999
Q ss_pred CCCC
Q 007517 426 EPKN 429 (600)
Q Consensus 426 ~p~~ 429 (600)
.|++
T Consensus 151 ~p~~ 154 (213)
T 1hh8_A 151 KSEP 154 (213)
T ss_dssp CCSG
T ss_pred Cccc
Confidence 9976
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.62 E-value=6.9e-07 Score=82.22 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=130.4
Q ss_pred hhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CC-H---HHHHHH
Q 007517 228 PSLISVLSVCASLASLDHGRQVHAQLVRCQFDV--DVYVASVLITMYIKCGELVKGKLIFDNFAS--KD-I---VMWNSI 299 (600)
Q Consensus 228 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l 299 (600)
..+......+...|++++|...++.+++..... ....+..+..+|.+.|++++|...|++... |+ . .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 345556677889999999999999999864321 235677889999999999999999998754 22 1 245555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCC
Q 007517 300 ISGYAQ------------------YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVE 361 (600)
Q Consensus 300 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~ 361 (600)
...+.. .|++++|+..|++..+. .|+....... ......+...
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a-------------~~~l~~~~~~---- 145 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDA-------------TKRLVFLKDR---- 145 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHH-------------HHHHHHHHHH----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHH-------------HHHHHHHHHH----
Confidence 555554 57899999999999875 5665421111 1111111110
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.......+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|...++++....|++.
T Consensus 146 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112345678899999999999999987 22343 24688889999999999999999999999888764
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=3.6e-07 Score=75.41 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=89.5
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007517 324 VMPDD-VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWG 400 (600)
Q Consensus 324 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 400 (600)
+.|+. ..+......+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 245566667778888888888888877642 446788888888889999999999888876 3334 577899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
.+..++...|++++|...++++++++|+++..+..|.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998777776654
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=3e-07 Score=77.75 Aligned_cols=97 Identities=13% Similarity=0.005 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3556667788889999999999999887 3334 6788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.58 E-value=1.3e-06 Score=79.17 Aligned_cols=134 Identities=11% Similarity=0.004 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYT 341 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~ 341 (600)
+.+...|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+. .|+ ..++..+..++...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4466777777777777777776543 36677777777788888888888888877764 444 44555555555444
Q ss_pred CC--HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007517 342 GK--VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLG 404 (600)
Q Consensus 342 g~--~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~ 404 (600)
|. .+.+...+..... ..|....+..+...+...|++++|...|++. ...|+......+..
T Consensus 136 ~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33 3334444444321 1222223344555666678888888888776 56677665555443
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=8.2e-07 Score=72.41 Aligned_cols=114 Identities=20% Similarity=0.198 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|.++++.+.+.. +.+...+..+...|.+.|++++|...++++ .. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345555556666666666666666665532 334566777777777777777777777766 21 23567788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQG 444 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 444 (600)
...|++++|...++++++..|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999998888888888777777777776543
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.57 E-value=2.7e-06 Score=77.36 Aligned_cols=172 Identities=6% Similarity=-0.084 Sum_probs=123.9
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCC-CCHHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007517 246 GRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFAS-KDIVMWNSIISGYAQYG----LGEKSLKVFHEMF 320 (600)
Q Consensus 246 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 320 (600)
|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .+..++..|...|.. + ++++|+++|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344455555543 555666677777777777777777776544 366777777777776 5 7888999998887
Q ss_pred HCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHhcCCCCCC---hHHHHHHHHHHhh----cCCHHHHHHHHHh
Q 007517 321 SSGVMPDDVTLVGVLSACSY----TGKVKEGREIFESMKSKYLVEPK---TEHYACMVDLLGR----AGQVEDAMKLIEA 389 (600)
Q Consensus 321 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 389 (600)
+.| +...+..+-..+.. .+++++|.++|++..+. .|. +..+..|..+|.. .+++++|.+.|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 765 45566666666666 78899999999888763 232 6788888888888 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHhccCC
Q 007517 390 M-PFEPDAIIWGSLLGACRTH-M-----KLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 390 m-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 427 (600)
. ...++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3234566777777777653 3 89999999998887754
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=2.6e-06 Score=88.07 Aligned_cols=334 Identities=13% Similarity=0.027 Sum_probs=172.6
Q ss_pred cC-ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC--CCcchHHHHHHHHhcCCC-hHHHHHHHhhC
Q 007517 81 DG-RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE--KNEVSWTAMLMGYTQCGR-IQDAWELFKAM 156 (600)
Q Consensus 81 ~g-~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~ 156 (600)
.| +++.|+.+|+.+.. .+-. |+++.+..+|++... |+...|...+....+.++ .+....+|+.+
T Consensus 7 ~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred cCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 45 36667776665432 2211 788888888888877 887777777776655553 34455666655
Q ss_pred C------CCCccchhHHHHHHH----hcCCHHHHHHHHHhcccCChhhHHHHHHHHH---HcCChHHHHHHHHHHHHcCC
Q 007517 157 P------MKSVVASNSMILGLG----QNGEVQKARVVFDQMREKDDATWSGMIKVYE---RKGYELEVIDLFTLMQKEGV 223 (600)
Q Consensus 157 ~------~~~~~~~~~li~~~~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~ 223 (600)
+ ..+...|...+..+. ..|+++.+.++|++...--...+..+-..|. +......+..++.+.
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~----- 149 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT----- 149 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH-----
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH-----
Confidence 4 223345555555443 2456777888887775421111111111111 111111122221111
Q ss_pred ccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc--CC-----HHHHHhhhhhcCC---CCH
Q 007517 224 RVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC--GE-----LVKGKLIFDNFAS---KDI 293 (600)
Q Consensus 224 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~--g~-----~~~A~~~~~~~~~---~~~ 293 (600)
.+.+..|+.++..+...--..+...|...++.-... |- .+.+..+|+++.. .+.
T Consensus 150 ----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~ 213 (493)
T 2uy1_A 150 ----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE 213 (493)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred ----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence 112233333333333210001223444433332111 00 2234556665443 356
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCC--------C---CC
Q 007517 294 VMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYL--------V---EP 362 (600)
Q Consensus 294 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~--------~---~p 362 (600)
..|-..+.-+.+.|+.++|..+|++.... |+...+... +......++ +++.+...+- . ..
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~ 284 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKE 284 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCTH---HHHHHHHHTC----------CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchhH---HHHHHHHHHHhhccchhhhhcccc
Confidence 67777777777888888888888888875 554332221 111111111 1222222110 0 01
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAMPFE-PDAIIWGSLLGACR-THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
....|...++.+.+.|.++.|.++|++.... ++...|......-. ..++.+.|..+++.+++..|+++..+...++..
T Consensus 285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 1345667777777788888888888877211 23334432222222 233688888888888887787766666667777
Q ss_pred HhcCCchHHHHHHHHH
Q 007517 441 ASQGRFHDVAELRKNM 456 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m 456 (600)
...|+.+.|+.++++.
T Consensus 365 ~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 365 LRIGDEENARALFKRL 380 (493)
T ss_dssp HHHTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHH
Confidence 7788888888888875
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.55 E-value=1e-06 Score=76.23 Aligned_cols=126 Identities=9% Similarity=-0.023 Sum_probs=91.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRT 408 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~ 408 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|.+.+++. ... .+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 4444455556666666666666665532 335667777777777888888888777766 222 356778888888899
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHH--HHHHHhcCCchHHHHHHHHHHh
Q 007517 409 HMKLDLAEVAAKKLLQLEPKNAGPYILL--SNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 409 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.|++++|...++++++..|.++..+..+ +..+...|++++|.+.++...+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999887776444 4447788999999998887653
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.54 E-value=3.4e-05 Score=73.81 Aligned_cols=212 Identities=10% Similarity=0.069 Sum_probs=150.6
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcC--CHHHHHhhhhhcCC---CCHHHHHHHHHHH----Hhc---CChH
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCG--ELVKGKLIFDNFAS---KDIVMWNSIISGY----AQY---GLGE 310 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~~ 310 (600)
.++|......++... +.+..+++.--..+...| +++++++.++.+.. ++..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 356777777777765 445666777777777777 88888888887654 4556676654444 444 6788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC------HHH
Q 007517 311 KSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVK--EGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ------VED 382 (600)
Q Consensus 311 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~------~~~ 382 (600)
+++++++++.+.. +-|...+..-...+.+.|.++ ++.++++.+.+.. +-+-..|+.-..++.+.|+ +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888752 334556665555666667776 8888888887753 3466777777777777666 788
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHhccC---CCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 383 AMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDL-AEVAAKKLLQLE---PKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 383 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
+++.++++ ...| |...|+.+...+...|+... ...+.+++.+++ |.++.....++.+|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 88888766 2233 67788888888877776444 555777777665 777777888888888888888888888888
Q ss_pred Hh
Q 007517 457 RK 458 (600)
Q Consensus 457 ~~ 458 (600)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=1.3e-06 Score=71.86 Aligned_cols=116 Identities=14% Similarity=0.018 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 44455555666666666666666665532 335666777777777777777777777765 2223 4677888888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFH 447 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 447 (600)
..|++++|...++++++..|+++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999988888888888888877753
No 128
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=7.6e-07 Score=78.33 Aligned_cols=119 Identities=10% Similarity=0.119 Sum_probs=86.7
Q ss_pred hccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHcCCH--H
Q 007517 339 SYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGA-CRTHMKL--D 413 (600)
Q Consensus 339 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~-~~~~g~~--~ 413 (600)
...|++++|...++...+.. +.+...|..+...|...|++++|.+.|++. ... .+...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777766542 345677777888888888888888888776 222 356677777777 6677887 8
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888887764
No 129
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.52 E-value=7.2e-07 Score=73.47 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677788888889999999888876 3234 57888888999999999999999999999999999889999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007517 442 SQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~ 459 (600)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=4.7e-07 Score=87.81 Aligned_cols=197 Identities=8% Similarity=-0.016 Sum_probs=148.0
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 318 (600)
..|++++|.++++...+.... . .+...+++++|...|... ...|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 457888999999888764311 1 011147888888877653 5678899999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcC---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007517 319 MFSS----GVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKY---LVEP-KTEHYACMVDLLGRAGQVEDAMKLIEA 389 (600)
Q Consensus 319 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 389 (600)
..+. |-.+. ..+|..+...+...|++++|...|++..+.+ |-.+ ...++..+..+|.+ |++++|.+.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 2467888888999999999999998876532 1111 14678889999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCCchHHHHHHHH
Q 007517 390 M-PFE---PD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA------GPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 390 m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
. .+. .+ ..++..+...+...|++++|...+++++++.|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 111 11 45788889999999999999999999999766543 2566778888899999999999998
Q ss_pred HH
Q 007517 456 MR 457 (600)
Q Consensus 456 m~ 457 (600)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=1.2e-06 Score=72.37 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=73.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|.+.+++. ... .+...|..+...+.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444445555555555555555554321 224555666666666666666666666655 222 34667777777888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGR 445 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 445 (600)
..|++++|...++++++..|.++..+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888888888888888888887778888877776553
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.50 E-value=1.9e-07 Score=89.25 Aligned_cols=189 Identities=8% Similarity=-0.064 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSA 337 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 337 (600)
...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34455566666666777777666665432 35666777777777777777777777776653 333 4456666667
Q ss_pred HhccCCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007517 338 CSYTGKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+...|++++|...|+...+.. |+ ...+...+....+......... .......++......+. .+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHHH
Confidence 777777777777776665421 21 0011111111111111111111 12222233444433332 22 267888999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQ-GRFHDVAELRKNMRK 458 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 458 (600)
..++++++++|++......+...+... +.+++|.++|....+
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999998766666666666665 778889999887765
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=2.2e-05 Score=75.34 Aligned_cols=158 Identities=12% Similarity=-0.034 Sum_probs=120.0
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC-----C----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK-----D----IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVM-PD----DVTLVG 333 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ 333 (600)
.+..+...|++++|...++..... + ...+..+...+...|++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999876541 2 123344666777788999999999999884322 22 226888
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcC----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKY----LVEPK-TEHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWG 400 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~ 400 (600)
+..++...|++++|..+|+++.+.. +..+. ..+|..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999887421 11122 447889999999999999999998876 22222 66888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhcc
Q 007517 401 SLLGACRTHM-KLDLAEVAAKKLLQL 425 (600)
Q Consensus 401 ~ll~~~~~~g-~~~~a~~~~~~~~~~ 425 (600)
.+..++...| ++++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999988763
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.43 E-value=1.4e-06 Score=85.60 Aligned_cols=161 Identities=14% Similarity=0.071 Sum_probs=116.5
Q ss_pred CCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 276 GELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++..+. .|+...+ ..+.+.++-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-
Confidence 344445555544332 24567777778888888888888888887764 3332110 001111110
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+.....|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|...++++++++|+++
T Consensus 193 --------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 193 --------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp --------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 012467888899999999999999999887 3334 678899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007517 431 GPYILLSNIYASQGRFHDV-AELRKNMRK 458 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~~ 458 (600)
..+..++.++...|++++| .+.++.|.+
T Consensus 265 ~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 265 AAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 456666643
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.41 E-value=4.1e-06 Score=80.45 Aligned_cols=162 Identities=10% Similarity=-0.067 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC---CC------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS---KD------IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGV---MPD--DV 329 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~---~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 329 (600)
.+...+..|...|++++|.+.++...+ .. ...+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567778889999999888865432 11 12344466667888899999999999875421 122 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------CC-CH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-----TEHYACMVDLLGRAGQVEDAMKLIEAM-PF------EP-DA 396 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------~p-~~ 396 (600)
+++.+...+...|++++|..+|++..+.....|+ ..++..+...|.+.|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999999988732111222 258889999999999999999999876 11 11 16
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHhcc
Q 007517 397 IIWGSLLGACRTHMKLDLA-EVAAKKLLQL 425 (600)
Q Consensus 397 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 425 (600)
.+|..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 7778887753
No 136
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=1.5e-06 Score=69.32 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK--NAGPYILLSN 438 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 438 (600)
+...+..+...+.+.|++++|...+++. .. ..+...|..+...+...|++++|...++++++..|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556667778888888888888888776 22 235777888888888999999999999999999998 8888889999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCC
Q 007517 439 IYASQ-GRFHDVAELRKNMRKRN 460 (600)
Q Consensus 439 ~~~~~-g~~~~a~~~~~~m~~~g 460 (600)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999887653
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.37 E-value=3.4e-06 Score=71.82 Aligned_cols=105 Identities=10% Similarity=-0.036 Sum_probs=87.4
Q ss_pred CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007517 324 VMPDDV-TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWG 400 (600)
Q Consensus 324 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 400 (600)
+.|+.. .+..+...+...|++++|...|+.+.+.. +.+...|..+..+|.+.|++++|.+.|++. .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455543 56677778889999999999999988752 446888999999999999999999999987 3344 477889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999763
No 138
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.37 E-value=3e-06 Score=70.65 Aligned_cols=98 Identities=9% Similarity=0.050 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 362 PKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45778888888899999999999988876 2233 577888889999999999999999999999999998999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007517 440 YASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 440 ~~~~g~~~~a~~~~~~m~~~ 459 (600)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=3.1e-06 Score=75.93 Aligned_cols=151 Identities=12% Similarity=0.015 Sum_probs=70.1
Q ss_pred HcCCHHHHHh---hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCCHH
Q 007517 274 KCGELVKGKL---IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSS----GVMPD-DVTLVGVLSACSYTGKVK 345 (600)
Q Consensus 274 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~ 345 (600)
..|++++|.+ .+..-+.....+++.+...|...|++++|+..|++.... +..|. ...+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455666665 443322234455666666666666666666666665441 11111 123444445555566666
Q ss_pred HHHHHHHHhHhc---CCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCH
Q 007517 346 EGREIFESMKSK---YLVEP--KTEHYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKL 412 (600)
Q Consensus 346 ~a~~~~~~~~~~---~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~ 412 (600)
+|...+++..+. .+-.| ....+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666555554432 11001 1233445555555555555555555443 00011 11234444445555555
Q ss_pred HHHHHHHHHHhc
Q 007517 413 DLAEVAAKKLLQ 424 (600)
Q Consensus 413 ~~a~~~~~~~~~ 424 (600)
++|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.35 E-value=5e-06 Score=77.78 Aligned_cols=135 Identities=10% Similarity=-0.073 Sum_probs=84.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC--hHHHHHHHHHH
Q 007517 297 NSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPK--TEHYACMVDLL 374 (600)
Q Consensus 297 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~li~~~ 374 (600)
-.....+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566667777777777666543 344433333444566777777777777644331 0 111 23566677777
Q ss_pred hhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 375 GRAGQVEDAMKLIEAM---PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.+.|++++|++.|++. +..|. ...+..+..++...|+.++|...|+++...+|+ +.....|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888887776 22143 335666777788888888888888888888886 4443333
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.35 E-value=7.3e-06 Score=65.83 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
.+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3444444555555555555555444 1112 3444555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 007517 444 GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 g~~~~a~~~~~~m~~ 458 (600)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.34 E-value=5.5e-06 Score=77.54 Aligned_cols=181 Identities=10% Similarity=0.005 Sum_probs=135.6
Q ss_pred HcCCHHHHHhhhhhcCC---CCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 007517 274 KCGELVKGKLIFDNFAS---KDIVMWNSI-------ISGYAQYGLGEKSLKVFHEMFSSGVMPDDV-------------- 329 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 329 (600)
..++.+.|.+.|.++.. .....|+.+ ...+.+.++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888888888887754 355778877 4556666666666666655443 344321
Q ss_pred --------HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 007517 330 --------TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDA----I 397 (600)
Q Consensus 330 --------t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 397 (600)
....+..++...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456678899999999999988753 354436677778999999999999999977433433 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLE--PK-NAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.+..+..++...|++++|+..+++..... |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 68888899999999999999999998543 54 4446788999999999999999999999874
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=1.5e-06 Score=71.01 Aligned_cols=94 Identities=17% Similarity=0.058 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888899999999999887 3344 6778888889999999999999999999999999989999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 007517 444 GRFHDVAELRKNMRKR 459 (600)
Q Consensus 444 g~~~~a~~~~~~m~~~ 459 (600)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.34 E-value=9.5e-06 Score=65.14 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|...++...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455556666677777777777666532 335667777777788888888888877766 2233 567788888888
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNI 439 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 439 (600)
...|++++|...++++++..|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 888999999999999998888887666665554
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.33 E-value=2.4e-06 Score=74.08 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555666666666666666666655 2223 45556666666666666666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666666554
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=4.7e-06 Score=73.17 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=96.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH-HhhcCCH--
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL-LGRAGQV-- 380 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~-- 380 (600)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+.. +.+...+..+..+ |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34677788888888877642 3345677777888888889999999888887642 3467778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 381 EDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999998877 3334 577888888999999999999999999999999885433
No 147
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=7.6e-06 Score=84.39 Aligned_cols=114 Identities=11% Similarity=-0.024 Sum_probs=57.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHH
Q 007517 303 YAQYGLGEKSLKVFHEMFSSGVMPD-DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVE 381 (600)
Q Consensus 303 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 381 (600)
+.+.|++++|++.|++..+. .|+ ...+..+..++...|++++|.+.+++..+.. +.+...|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 44455566666666655553 232 4455555555666666666666666555431 233555566666666666666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007517 382 DAMKLIEAM-PFEP-DAIIWGSLLGA--CRTHMKLDLAEVAAK 420 (600)
Q Consensus 382 ~A~~~~~~m-~~~p-~~~~~~~ll~~--~~~~g~~~~a~~~~~ 420 (600)
+|.+.+++. ...| +...+..+..+ +...|++++|+..++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666554 1122 12233333333 555566666666666
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=4.6e-06 Score=67.81 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYA 441 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 441 (600)
...+..+...+.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...++++.+..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 22 3467889999999999999999999999999999999899999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007517 442 SQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~~ 459 (600)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=4.2e-06 Score=69.08 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=89.5
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSN 438 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 438 (600)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778889999999999999999999987 4445 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007517 439 IYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 439 ~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 150
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.30 E-value=3.7e-06 Score=86.75 Aligned_cols=118 Identities=7% Similarity=-0.035 Sum_probs=99.3
Q ss_pred HHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHH
Q 007517 336 SACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLD 413 (600)
Q Consensus 336 ~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 413 (600)
..+...|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34567899999999999998752 345889999999999999999999999987 4445 5788999999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchHHHHHHHH
Q 007517 414 LAEVAAKKLLQLEPKNAGPYILLSNI--YASQGRFHDVAELRKN 455 (600)
Q Consensus 414 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 455 (600)
+|+..++++++++|+++..+..++.+ +...|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998888888888 8899999999998874
No 151
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=5.1e-06 Score=74.53 Aligned_cols=83 Identities=14% Similarity=0.001 Sum_probs=43.3
Q ss_pred HhcCCHHHHHH---HHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHc----CCcc-CchhHhhHHHHHhhhcch
Q 007517 172 GQNGEVQKARV---VFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKE----GVRV-NFPSLISVLSVCASLASL 243 (600)
Q Consensus 172 ~~~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~ 243 (600)
...|++++|.+ ++..-+.....+++.+...+...|++++|+..|++.... +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34567777777 444433334556777777777777777777777776542 1111 122333444444455555
Q ss_pred HHHHHHHHHHH
Q 007517 244 DHGRQVHAQLV 254 (600)
Q Consensus 244 ~~a~~~~~~~~ 254 (600)
++|...+....
T Consensus 83 ~~A~~~~~~al 93 (203)
T 3gw4_A 83 DAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=1.7e-06 Score=73.64 Aligned_cols=102 Identities=10% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45555666777788888888887776642 346777778888888888888888888876 3334 5677888888899
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
..|++++|...+++++++.|+++...
T Consensus 101 ~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999988876553
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=6.1e-06 Score=69.60 Aligned_cols=96 Identities=14% Similarity=0.086 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666655 33454 455566666666666666666666666666666666666666
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007517 438 NIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666554
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=2.5e-06 Score=70.35 Aligned_cols=95 Identities=7% Similarity=0.029 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc-------hHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG-------PYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 434 (600)
...+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345677888999999999999999887 3344 5778999999999999999999999999998887653 567
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHh
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.++.+|...|++++|.+.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 788889999999999999998765
No 155
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=1.5e-05 Score=68.74 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence 3456677777888888888888888877642 3345667777777888888888888888877642 345777888888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHhc
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGS--LLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
.|.+.|++++|.+.+++. ...| +...+.. +...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888876 2223 3444433 33346677888888888877654
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.25 E-value=6.3e-06 Score=73.92 Aligned_cols=171 Identities=9% Similarity=-0.076 Sum_probs=108.2
Q ss_pred HHHHHHHcCCHHHHHhhhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 007517 268 LITMYIKCGELVKGKLIFDNFASK---DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV 344 (600)
Q Consensus 268 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 344 (600)
.+......|+++.|.+.|+..... ....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~---------- 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ---------- 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH----------
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh----------
Confidence 344455567777777777654332 4556777888888899999999999988874 2322111000
Q ss_pred HHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 345 KEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
....-.. ......|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++
T Consensus 78 -----~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 78 -----ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp -----HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0000000 011456777888888999999999888877 2233 6778888999999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHhcCCchHHH-HHHHHHHhC
Q 007517 423 LQLEPKNAGPYILLSNIYASQGRFHDVA-ELRKNMRKR 459 (600)
Q Consensus 423 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 459 (600)
++++|+++..+..+..++...|+.+++. ..++.|...
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999889999999998888887777 455555443
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=8.2e-06 Score=66.90 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFE-PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...+...|++++|.+.+++. ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4667888899999999999999999987 223 36788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007517 441 ASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 441 ~~~g~~~~a~~~~~~m~~~ 459 (600)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.25 E-value=7.3e-05 Score=72.34 Aligned_cols=228 Identities=11% Similarity=0.064 Sum_probs=111.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCccCchh-HhhHHHHHhhhc-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHc-C
Q 007517 200 KVYERKGYELEVIDLFTLMQKEGVRVNFPS-LISVLSVCASLA-SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKC-G 276 (600)
Q Consensus 200 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g 276 (600)
....+.+..++|++++.++... .|+..| ++.--.++...+ .++++..++..+++.. +-+..+++.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3334455566777777777764 344333 233333333344 3556666665555543 33344444444444443 4
Q ss_pred -CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 007517 277 -ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFE 352 (600)
Q Consensus 277 -~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 352 (600)
+.++++++++.+.+ +|..+|+.-.-.+.+.|.++. . ....++++.++++
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~--------------~-------------~~~~~~eELe~~~ 191 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGR--------------I-------------SEAQWGSELDWCN 191 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTC--------------C-------------CHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccc--------------c-------------chhhHHHHHHHHH
Confidence 44555555554443 233444443333333332220 0 0000124555555
Q ss_pred HhHhcCCCCCChHHHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCH-----------
Q 007517 353 SMKSKYLVEPKTEHYACMVDLLGRAGQ-------VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKL----------- 412 (600)
Q Consensus 353 ~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~----------- 412 (600)
++.+.. +-|...|+....++.+.++ ++++++.++++ ...| |...|+.+-..+.+.|..
T Consensus 192 k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 554431 2344555555555555544 45555555544 2223 455566555555554432
Q ss_pred ---------HHHHHHHHHHhcc------CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 413 ---------DLAEVAAKKLLQL------EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 413 ---------~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.........+... ++.++.....|+.+|...|+.++|.++++.+.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1122222222222 1455566778999999999999999999998643
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=6.4e-06 Score=69.36 Aligned_cols=105 Identities=13% Similarity=-0.008 Sum_probs=76.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+..+...+...|++++|...|+...... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34445556667777777777777776642 345677777888888888888888888776 2233 4667778888888
Q ss_pred HcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
..|++++|...+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 89999999999999999888876655443
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=7.5e-06 Score=70.71 Aligned_cols=94 Identities=11% Similarity=0.047 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PF------------------EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~------------------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+......+.+.|++++|.+.|++. .. .| +...|..+..++...|+++.|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555555655555555543 11 12 2457888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9999899999999999999999999999887664
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.22 E-value=1.4e-05 Score=69.10 Aligned_cols=107 Identities=15% Similarity=0.040 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007517 329 VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGAC 406 (600)
Q Consensus 329 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~ 406 (600)
..+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|.+.|++. .+.| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345556666777777777777777776642 335777888888888888888888888877 3334 577899999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLS 437 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 437 (600)
...|++++|...++++++++|+++..+....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999987655443
No 162
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.00064 Score=65.75 Aligned_cols=225 Identities=9% Similarity=0.018 Sum_probs=134.7
Q ss_pred HHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhh-c-c
Q 007517 170 GLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKG-YELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASL-A-S 242 (600)
Q Consensus 170 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~-~-~ 242 (600)
...+.+..++|+++++++... +..+|+.--..+...| .++++++++..+.... |. ...++.--..+... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 344555667899999998753 5567888777888888 5999999999998753 43 34455544445555 5 7
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHH--------HHHhhhhhcCC---CCHHHHHHHHHHHHhcCC---
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELV--------KGKLIFDNFAS---KDIVMWNSIISGYAQYGL--- 308 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~g~--- 308 (600)
.+++..++..+.+.. +.+..+++--...+.+.|.++ ++.+.++++.+ .|..+|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence 889999999988765 456667766555555555444 55555554433 355566655555544443
Q ss_pred ----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH----
Q 007517 309 ----GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV---- 380 (600)
Q Consensus 309 ----~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---- 380 (600)
++++++.++++... .| -|...|+-+-..+.+.|+.
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P-----------------------------------~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IP-----------------------------------HNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CT-----------------------------------TCHHHHHHHHHHHHHTTCCSGGG
T ss_pred chHHHHHHHHHHHHHHHh--CC-----------------------------------CCHHHHHHHHHHHHhcCCCcccc
Confidence 34444444444432 22 2334444433334333322
Q ss_pred ----------------HHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh-ccCCCCCchHH
Q 007517 381 ----------------EDAMKLIEAM-PF-------EPDAIIWGSLLGACRTHMKLDLAEVAAKKLL-QLEPKNAGPYI 434 (600)
Q Consensus 381 ----------------~~A~~~~~~m-~~-------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~ 434 (600)
.+..++..++ +. .+....+..|+..|...|+.++|.++++.+. +.+|-....+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2223333333 11 2467777778888888888888888888876 56776533333
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.20 E-value=1.1e-05 Score=76.80 Aligned_cols=182 Identities=8% Similarity=-0.124 Sum_probs=100.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHhhCC---CCCccchhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHc
Q 007517 132 SWTAMLMGYTQCGRIQDAWELFKAMP---MKSVVASNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERK 205 (600)
Q Consensus 132 t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 205 (600)
.+..+...+...|++++|...+..+. +.+...+..+...|.+.|++++|...|++..+. +...|..+..+|...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 44455555666666666666666655 345556666777777777777777777776542 556677788888888
Q ss_pred CChHHHHHHHHHHHHcCCccC-chhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhh
Q 007517 206 GYELEVIDLFTLMQKEGVRVN-FPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLI 284 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 284 (600)
|++++|+..|++..... |+ ...+...+........ .. .+........+.+..+...+...+ .|+.++|.+.
T Consensus 86 g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~ 157 (281)
T 2c2l_A 86 ESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAK---KK-RWNSIEERRIHQESELHSYLTRLI--AAERERELEE 157 (281)
T ss_dssp TCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHH---HH-HHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHH---HH-HHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHH
Confidence 88888888888776642 22 1222222222221111 11 112223333444555544443322 5677777777
Q ss_pred hhhcCCC---CHHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 007517 285 FDNFASK---DIVMWNSIISGYAQY-GLGEKSLKVFHEMFS 321 (600)
Q Consensus 285 ~~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~ 321 (600)
++...+. +......+...+.+. +.+++|.++|.+..+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7665442 222333333333333 455666666666543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2.3e-05 Score=65.99 Aligned_cols=107 Identities=15% Similarity=-0.012 Sum_probs=64.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLG 404 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 404 (600)
+..+...+...|++++|.+.|+...+. .|+ ...+..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 333333444444444444444444331 232 345555666666666666666666654 2223 4666777777
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
++...|++++|...+++++++.|+++..+..+..+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 788888888888888888888888766655555544
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.4e-05 Score=65.46 Aligned_cols=108 Identities=7% Similarity=-0.092 Sum_probs=72.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACR 407 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~ 407 (600)
.+......+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++. .+.| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444555666666666666666665532 334667777777777777777777777766 2233 4667777888888
Q ss_pred HcCCHHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 007517 408 THMKLDLAEVAAKKLLQLE------PKNAGPYILLSNI 439 (600)
Q Consensus 408 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 439 (600)
..|++++|...++++++++ |+++.....+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 8888888888888888887 6665555555444
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.14 E-value=1.8e-05 Score=64.83 Aligned_cols=96 Identities=9% Similarity=0.100 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC-------CchHH
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN-------AGPYI 434 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 434 (600)
...+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455677788888888888888888876 22 3367778888888889999999999999999887765 67788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8999999999999999999988763
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.13 E-value=8.3e-06 Score=68.90 Aligned_cols=93 Identities=15% Similarity=0.025 Sum_probs=72.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------
Q 007517 367 YACMVDLLGRAGQVEDAMKLIEAM-PFEPD-------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQL------- 425 (600)
Q Consensus 367 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------- 425 (600)
+......+.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444555566666777776666655 11222 338888888899999999999999999988
Q ss_pred CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPY----ILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..| ...+.++...|++++|.+.|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99998889 99999999999999999999988753
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.10 E-value=9.4e-06 Score=66.73 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=56.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEPD-A---IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN---AGPYILLSNIYA 441 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 441 (600)
+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|++ +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 445556666666666666655 11222 2 355566666667777777777777777777766 455666777777
Q ss_pred hcCCchHHHHHHHHHHh
Q 007517 442 SQGRFHDVAELRKNMRK 458 (600)
Q Consensus 442 ~~g~~~~a~~~~~~m~~ 458 (600)
..|++++|.+.++...+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777776654
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.10 E-value=2.1e-05 Score=65.38 Aligned_cols=100 Identities=11% Similarity=-0.071 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007517 327 DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLG 404 (600)
Q Consensus 327 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 404 (600)
+...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|...+++. ...| +...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34555666666666777777777777666532 334667777777777777777777777766 2233 4667778888
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCC
Q 007517 405 ACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 405 ~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
++...|++++|...+++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888888888888888888887776
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.00043 Score=66.59 Aligned_cols=230 Identities=11% Similarity=0.060 Sum_probs=130.1
Q ss_pred HcCCh-HHHHHHHHHHHHcCCccCchhH-hh---HHHHHhhh-------cchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 007517 204 RKGYE-LEVIDLFTLMQKEGVRVNFPSL-IS---VLSVCASL-------ASLDHGRQVHAQLVRCQFDVDVYVASVLITM 271 (600)
Q Consensus 204 ~~g~~-~~A~~~~~~m~~~g~~p~~~t~-~~---ll~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 271 (600)
+.|.+ ++|++++..+... .|+..|. +. ++...... ..++++..++..+.... +-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44444 3677777777653 4554432 21 12221111 12566666777776654 4466667666666
Q ss_pred HHHcC--CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 007517 272 YIKCG--ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL-GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYT---- 341 (600)
Q Consensus 272 y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---- 341 (600)
+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+.++.+.. .-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66666 37778777777654 567777777666677776 478888888887753 22333444333333222
Q ss_pred ----------CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 007517 342 ----------GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA-----------GQVEDAMKLIEAM-PFEPDAIIW 399 (600)
Q Consensus 342 ----------g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~ 399 (600)
+.++++.+.+....... +-|...|+-+-..+.+. +.++++++.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 34667777777766532 34566666555555554 3466677666666 334543 33
Q ss_pred HHHHHHH-----HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 400 GSLLGAC-----RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 400 ~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
..+..+. ...|..++....+.++.+++|....-|.-+...+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 3222111 1245666777777777777776655555554433
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=2.1e-05 Score=62.34 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP---DAIIWGSLLGA 405 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~ll~~ 405 (600)
.+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44445555666677777777776666532 334666777777777777777777777766 2233 46677777778
Q ss_pred HHHc-CCHHHHHHHHHHHhccCCCCC
Q 007517 406 CRTH-MKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 406 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+... |++++|...++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888877653
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.07 E-value=2e-05 Score=77.17 Aligned_cols=97 Identities=9% Similarity=-0.025 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
+...+..+...|.+.|++++|.+.|++. .+.|+ ...|..+..++...|++++|+..+++++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777888888888888888888876 22333 578999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 426 EPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 426 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.06 E-value=2.7e-05 Score=79.81 Aligned_cols=160 Identities=12% Similarity=0.066 Sum_probs=111.1
Q ss_pred CHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 007517 277 ELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFES 353 (600)
Q Consensus 277 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 353 (600)
++++|...|+.... .....|..+...|.+.|++++|+..|++..+. .|+...+ . -+... .
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----H
Confidence 44445555544332 23457777888888888888888888887763 2222110 0 01111 0
Q ss_pred hHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 354 MKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 354 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
.. +.....|..+..+|.+.|++++|.+.+++. .+.| +...|..+..+|...|++++|...++++++++|++..
T Consensus 312 ~~-----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~ 386 (457)
T 1kt0_A 312 SE-----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386 (457)
T ss_dssp HH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----C
T ss_pred HH-----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 10 112467888999999999999999999887 3334 6788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHH-HHHHHHh
Q 007517 432 PYILLSNIYASQGRFHDVAE-LRKNMRK 458 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~-~~~~m~~ 458 (600)
.+..++.++...|+++++.+ .++.|..
T Consensus 387 a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988774 4555543
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.06 E-value=3e-06 Score=68.71 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHH
Q 007517 377 AGQVEDAMKLIEAM-PF---EP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAE 451 (600)
Q Consensus 377 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 451 (600)
.|++++|.+.|++. .. .| +...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555544 22 13 234455566666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 007517 452 LRKNMRK 458 (600)
Q Consensus 452 ~~~~m~~ 458 (600)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=5.3e-05 Score=67.72 Aligned_cols=118 Identities=10% Similarity=-0.017 Sum_probs=86.5
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-D----------------AIIWGS 401 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~----------------~~~~~~ 401 (600)
..|.++.+.+.++..... .......+..+...+.+.|++++|.+.|++. ...| + ...|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 345555555554422221 0112445667777788888888888888766 2122 1 268888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988764
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.04 E-value=1.7e-05 Score=64.96 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=60.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----CCC----HHHHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PF----EPD----AIIWGS 401 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~----~p~----~~~~~~ 401 (600)
+..+...+...|++++|...|+...+.. +.+...+..+...|.+.|++++|...+++. .. .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3334444445555555555555554431 234455555666666666666666666554 11 122 556667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 402 LLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 402 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+...|++++|...++++++..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77777777788888888877777777 344444444443
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.01 E-value=2.7e-05 Score=63.44 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=68.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 007517 332 VGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH 409 (600)
Q Consensus 332 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 409 (600)
..+...+...|++++|...|+...+.. +.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344456667788888888887777642 345777778888888888888888888776 3344 466788888888888
Q ss_pred CCHHHHHHHHHHHhccCCCCC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~ 430 (600)
|++++|...++++++++|+++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888753
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.00 E-value=7.4e-05 Score=61.20 Aligned_cols=99 Identities=13% Similarity=0.006 Sum_probs=67.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKT---EHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----AIIWGSLLGA 405 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~ 405 (600)
+...+...|++++|...|+.+.+.. +.+. ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3344556677777777777666542 1222 46666777777788888887777766 22232 4567777788
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCCCchHH
Q 007517 406 CRTHMKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 406 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+...|++++|...++++++..|+++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888898888888888888754433
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=5.5e-05 Score=76.85 Aligned_cols=164 Identities=8% Similarity=-0.083 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHhc---CCCCC-ChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDV----TLVGVLSACSYTGKVKEGREIFESMKSK---YLVEP-KTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~ 365 (600)
++..+...|...|++++|.+++.++...- ..++.. ..+.+-..+...|+.+++.+++...... .+..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777888888888888777765421 112221 1222223344567888888887765431 11122 256
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---CCC----C
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-----P--FEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLE---PKN----A 430 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 430 (600)
++..++..|...|++++|..++++. + -+|. ..++..++..|...|++++|..++++++... ++. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788889999999999999888765 1 1222 4467788888999999999999998887643 222 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 431 GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677788888999999888776643
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.00 E-value=0.00068 Score=65.23 Aligned_cols=217 Identities=9% Similarity=0.016 Sum_probs=152.7
Q ss_pred hhcch-HHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCC----------HHHHHhhhhhcCC---CCHHHHHHHHHHHH
Q 007517 239 SLASL-DHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGE----------LVKGKLIFDNFAS---KDIVMWNSIISGYA 304 (600)
Q Consensus 239 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~ 304 (600)
+.|.+ ++|......++..+ |.+..+++.--..+...|. ++++..+++.+.. ++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 33443 46788888888765 3344555544333333332 6788888887653 58889998888888
Q ss_pred hcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhc----
Q 007517 305 QYGL--GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK-VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRA---- 377 (600)
Q Consensus 305 ~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---- 377 (600)
..|. ++++++++.++.+.. +-|...|+.--.++...|. ++++.+.++.+.+.. +.|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhhcc
Confidence 8784 899999999999853 3355566665556667777 689999999998863 45777888777777665
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHhccCCCCCchHH
Q 007517 378 ----------GQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH-----------MKLDLAEVAAKKLLQLEPKNAGPYI 434 (600)
Q Consensus 378 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 434 (600)
+.++++++.+++. ...| |...|+.+-..+... +.+++++..++++++++|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 5588899988877 2234 678888776666555 4578999999999999999854444
Q ss_pred HHHHH---HHhcCCchHHHHHHHHHHhC
Q 007517 435 LLSNI---YASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 435 ~l~~~---~~~~g~~~~a~~~~~~m~~~ 459 (600)
.++.. ....|..++....+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 43322 22467778888888888763
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=5.5e-05 Score=77.53 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=97.0
Q ss_pred HHhccCCHHHHHHHHHHhHhcC--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 007517 337 ACSYTGKVKEGREIFESMKSKY--LVEP----KTEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWG 400 (600)
Q Consensus 337 a~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 400 (600)
.+...|++++|..++++..+.. -+.| ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788888888887765421 1122 2567889999999999999999988775 33454 45689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 401 SLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAGP---YILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 401 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.|...|...|++++|+.+++++++ +.|++|.+ ...+..++...|++++|..+++++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 47887655 4567888889999999999999998743
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=3.8e-05 Score=65.47 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC------CCCc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM----PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP------KNAG 431 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~ 431 (600)
.+..+...|...|++++|.+.+++. +..++ ...+..+...+...|++++|...+++++++.+ ..+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555555555555555543 00111 33456666667777777777777777665421 1134
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 432 PYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 432 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567788888888888888888877654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.94 E-value=4e-05 Score=76.06 Aligned_cols=138 Identities=9% Similarity=-0.028 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|..+...+.+.|++++|++.|++..+. .|+.. .... .+...+. -+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~~~--~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGAKL--QPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHHHH--HHHHHHHHHHHHH
Confidence 345777788888888888888888887652 11100 0001 1111111 0224678889999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHH
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVA 450 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 450 (600)
+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 5555 57789999999999999999999999999999999888899999998888877765
Q ss_pred H
Q 007517 451 E 451 (600)
Q Consensus 451 ~ 451 (600)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 184
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=0.00012 Score=60.00 Aligned_cols=31 Identities=16% Similarity=-0.042 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 398 IWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 398 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+|..+..++...|++++|+..++++++..|+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 4555666666777777777777777766664
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=3.3e-05 Score=75.73 Aligned_cols=148 Identities=12% Similarity=0.027 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMV 371 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li 371 (600)
....|..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 3456777888888999999999999998763 555442 233344444433221 23778899
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCchH
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY-ASQGRFHD 448 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~ 448 (600)
.+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..|..+. ...+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887 3344 6788999999999999999999999999999999988888888774 45567778
Q ss_pred HHHHHHHHHhC
Q 007517 449 VAELRKNMRKR 459 (600)
Q Consensus 449 a~~~~~~m~~~ 459 (600)
+.++++.|.+.
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888887654
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=4.6e-05 Score=64.96 Aligned_cols=131 Identities=11% Similarity=0.010 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCC----ChH
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGV-MPDD----VTLVGVLSACSYTGKVKEGREIFESMKSKYLVEP----KTE 365 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 365 (600)
++..+...|...|++++|+..+++..+... .++. .++..+...+...|++++|.+.++...+...-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444445555555555555554433210 0110 2344445555556666666666555443210001 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-------PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQL 425 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 425 (600)
.+..+...|...|++++|.+.+++. +..+ ....+..+...+...|++++|...+++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666667777777777777766654 1111 1345666777788888888888888887764
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.87 E-value=5.3e-05 Score=74.24 Aligned_cols=150 Identities=10% Similarity=0.028 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHhhhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007517 262 VYVASVLITMYIKCGELVKGKLIFDNFAS--KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACS 339 (600)
Q Consensus 262 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 339 (600)
...+..+...|.+.|++++|...|++... ++.. .+...|+.+++...+. ...+..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34566788888899999999999988654 2222 1223334444433321 135667777888
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGA-CRTHMKLDLAE 416 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~~~~a~ 416 (600)
+.|++++|...++...+.. +.+...|..+..+|...|++++|.+.|++. .+.|+ ...+..|... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887742 346788899999999999999999999988 55564 3445555444 33456778888
Q ss_pred HHHHHHhccCCCCC
Q 007517 417 VAAKKLLQLEPKNA 430 (600)
Q Consensus 417 ~~~~~~~~~~p~~~ 430 (600)
..+.++++..|+++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 89999999888764
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=3.5e-05 Score=61.22 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC------CchHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN------AGPYI 434 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 434 (600)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567778888999999999999999877 3334 67889999999999999999999999999999998 66777
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRK 454 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~ 454 (600)
.++.++...|++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888888887777765443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=1.9e-05 Score=63.88 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHhHhcCC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 007517 341 TGKVKEGREIFESMKSKYL-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEV 417 (600)
Q Consensus 341 ~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 417 (600)
.|++++|...|++..+... -+.+...+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4666667777776664210 0223566777777888888888888888776 2233 46677778888888888888888
Q ss_pred HHHHHhccCCCCCch
Q 007517 418 AAKKLLQLEPKNAGP 432 (600)
Q Consensus 418 ~~~~~~~~~p~~~~~ 432 (600)
.++++++..|+++..
T Consensus 83 ~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 83 LLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHCCCHHH
T ss_pred HHHHHHHhCCCcHHH
Confidence 888888888877543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.83 E-value=4.2e-05 Score=64.60 Aligned_cols=70 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCch
Q 007517 366 HYACMVDLLGRAGQVEDAMKLIEAM-PF-------EPD-AIIW----GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGP 432 (600)
Q Consensus 366 ~~~~li~~~~~~g~~~~A~~~~~~m-~~-------~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 432 (600)
.|..+..++.+.|++++|+..+++. .+ .|+ ...| .....++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777788888888777777665 33 776 4578 899999999999999999999999999988655
Q ss_pred HHH
Q 007517 433 YIL 435 (600)
Q Consensus 433 ~~~ 435 (600)
+..
T Consensus 139 ~~~ 141 (159)
T 2hr2_A 139 TPG 141 (159)
T ss_dssp CTT
T ss_pred HHH
Confidence 433
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=9.9e-05 Score=73.20 Aligned_cols=65 Identities=8% Similarity=-0.028 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+..++.+.|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999998764
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00018 Score=73.66 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 007517 364 TEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPD----------------AIIWGSLLGACRTHMKLDLAEVAAKKLLQLE 426 (600)
Q Consensus 364 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 426 (600)
...|..+...|.+.|++++|...|++. .+.|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445666777777788888887777766 21222 5788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|+++.+|..++.+|...|++++|...+++..+.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998865
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00024 Score=72.09 Aligned_cols=158 Identities=9% Similarity=0.023 Sum_probs=117.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCCh
Q 007517 301 SGYAQYGLGEKSLKVFHEMFSSGVMPD----------------DVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKT 364 (600)
Q Consensus 301 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~ 364 (600)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677888888888888877532211 1236778889999999999999999887643222222
Q ss_pred ----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------C
Q 007517 365 ----EHYACMVDLLGRAGQVEDAMKLIEAM-------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQL------E 426 (600)
Q Consensus 365 ----~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 426 (600)
.+.+.+...+...|++++|.++++.. +..+. ..++..|...+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23455566677789999999988765 22333 557888999999999999999999988763 1
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 427 PKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 427 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|.....+..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345688899999999999999999988764
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.00085 Score=70.42 Aligned_cols=168 Identities=7% Similarity=-0.048 Sum_probs=132.2
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGL----------GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTG-- 342 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 342 (600)
-++|.+.++.+.. .+..+|+.--..+...|+ ++++++.++++.+.. +-+...|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4566777776653 456778776666666666 899999999998752 334456776666777888
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc----------
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG-QVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH---------- 409 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---------- 409 (600)
+++++.+.++++.+.. +-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6799999999998853 456788888888888889 899999999988 4445 677888888776663
Q ss_pred ----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchH
Q 007517 410 ----MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHD 448 (600)
Q Consensus 410 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 448 (600)
+.++++.+.+.+++.++|++..+|..+..++...|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.79 E-value=7.6e-05 Score=64.22 Aligned_cols=119 Identities=17% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 293 IVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 293 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
...|......+.+.|++++|+..|.+.... +............. ...+. +.+...|..+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~nla~ 71 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVELD-----RKNIPLYANMSQ 71 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHHH-----HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHHH-----HHHHHHHHHHHH
Confidence 456677777788888888888888776642 00000000000000 00000 223567888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 373 LLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999877 3344 577899999999999999999999999999999986
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=8.2e-05 Score=56.48 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIY 440 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 440 (600)
+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3566777888888899999999888876 2233 5778888889999999999999999999999999988888888887
Q ss_pred HhcC
Q 007517 441 ASQG 444 (600)
Q Consensus 441 ~~~g 444 (600)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6654
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.74 E-value=0.00011 Score=57.28 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999999999999999999999999999999999987653
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.00012 Score=58.62 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 383 AMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 383 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444 2334 5677888888888888888888888888888888888888888888888888888888887765
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00038 Score=71.34 Aligned_cols=114 Identities=12% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCc---hHH
Q 007517 373 LLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAG---PYI 434 (600)
Q Consensus 373 ~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~ 434 (600)
.+...|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++|. ++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988765 22343 45789999999999999999999999886 4666654 477
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 435 LLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 435 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
.|+.+|..+|++++|..++++..+.-.. ..|. . ||...++...+.+....++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG~-~-Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THGP-S-HPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTCT-T-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhCC-C-ChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999988652110 1121 1 8988888877766665543
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.56 E-value=3.4e-05 Score=65.03 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=60.9
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 007517 376 RAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMK----------LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ 443 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 443 (600)
|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555555544 2223 34455555555544443 57999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhC
Q 007517 444 G-----------RFHDVAELRKNMRKR 459 (600)
Q Consensus 444 g-----------~~~~a~~~~~~m~~~ 459 (600)
| ++++|.+.|++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999998874
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.00045 Score=69.63 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=85.1
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCC---ch
Q 007517 371 VDLLGRAGQVEDAMKLIEAM------PFEPD----AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNA---GP 432 (600)
Q Consensus 371 i~~~~~~g~~~~A~~~~~~m------~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 432 (600)
+.-+.+.|++++|.+++++. -+.|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44456778888888887655 11222 44688888899999999999999998886 355554 45
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHH
Q 007517 433 YILLSNIYASQGRFHDVAELRKNMRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLR 505 (600)
Q Consensus 433 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~ 505 (600)
+..|+.+|..+|++++|..++++..+--. + ..|. . ||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~----------------~lG~-~-Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-V----------------THGR-E-HSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H----------------HTCT-T-SHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-H----------------hcCC-C-ChHHHHHHHHHHHHHHHHh
Confidence 77899999999999999999998865210 0 1121 1 8999998888888877775
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.41 E-value=0.00061 Score=52.06 Aligned_cols=68 Identities=21% Similarity=0.128 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 393 EPDAIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+|+..+..+..++...++ .++|..+++++++++|+++.....++..+...|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567788888888766655 6999999999999999999999999999999999999999999998765
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.40 E-value=0.00017 Score=60.68 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc
Q 007517 342 GKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQ----------VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTH 409 (600)
Q Consensus 342 g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 409 (600)
+.+++|.+.++...+.. +.+...|..+..++.+.|+ +++|+..|++. .+.| +...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 34555555555555431 3345556656666655554 34777777666 4445 355677777777765
Q ss_pred -----------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 410 -----------MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 410 -----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
|++++|+..|+++++++|+++ .|...+.. .++|.+++-.....
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccc
Confidence 489999999999999999983 44333332 24555655555544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.33 E-value=0.00051 Score=54.18 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 394 PDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
++...|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678889999999999999999999999999999999999999999999999999999998764
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.29 E-value=0.0026 Score=52.75 Aligned_cols=89 Identities=7% Similarity=-0.102 Sum_probs=41.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh---
Q 007517 370 MVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYAS--- 442 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 442 (600)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .++.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333333334444444333111233344444444443 44555555555555443 233455555555555
Q ss_pred -cCCchHHHHHHHHHHhCC
Q 007517 443 -QGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 443 -~g~~~~a~~~~~~m~~~g 460 (600)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 555556665555555544
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.22 E-value=0.002 Score=53.44 Aligned_cols=112 Identities=7% Similarity=-0.154 Sum_probs=92.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhh----cCCHHH
Q 007517 307 GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGR----AGQVED 382 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 382 (600)
+++++|+++|++..+.| .|+.. +-..+...+.+++|.++|++..+. .++..+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 44444 556677778889999999998874 467888889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 007517 383 AMKLIEAMPFEPDAIIWGSLLGACRT----HMKLDLAEVAAKKLLQLEP 427 (600)
Q Consensus 383 A~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 427 (600)
|.+.|++.-...++..+..|...|.. .++.++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988323578888888888888 8999999999999988753
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.14 E-value=0.001 Score=67.00 Aligned_cols=83 Identities=10% Similarity=0.052 Sum_probs=65.5
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCC---chHHHHH
Q 007517 376 RAGQVEDAMKLIEAM---------PFEPD-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNA---GPYILLS 437 (600)
Q Consensus 376 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 437 (600)
..|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|++| .+|..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888777654 22343 45688899999999999999999999886 356654 4588899
Q ss_pred HHHHhcCCchHHHHHHHHHHh
Q 007517 438 NIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 438 ~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.+|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.14 E-value=0.0012 Score=49.81 Aligned_cols=65 Identities=28% Similarity=0.332 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999988764
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.10 E-value=0.0015 Score=51.99 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 347 GREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 347 a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
+...|+...+.. +.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555431 335667777777777888888888777766 2233 466777778888888888888888888887
Q ss_pred cCCCC
Q 007517 425 LEPKN 429 (600)
Q Consensus 425 ~~p~~ 429 (600)
+.|..
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 76643
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.06 E-value=0.012 Score=61.77 Aligned_cols=149 Identities=15% Similarity=0.035 Sum_probs=118.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCC----------HHHHHHHHHHhHhcCCCCCChHHHHHHHHHH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVT-LVGVLSACSYTGK----------VKEGREIFESMKSKYLVEPKTEHYACMVDLL 374 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~ 374 (600)
....++|++.++++... .|+..| |+.--.++...|+ ++++.+.++.+.+.. +-+...|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 34457889999999984 676654 4444444444555 899999999998853 45688898888899
Q ss_pred hhcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc------
Q 007517 375 GRAG--QVEDAMKLIEAM-PF-EPDAIIWGSLLGACRTHM-KLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQ------ 443 (600)
Q Consensus 375 ~~~g--~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 443 (600)
.+.| ++++|.+.++++ .. ..|...|+.-.......| ..++++..++++++.+|.+..+|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999998 22 347888999888888888 899999999999999999999999988888764
Q ss_pred --------CCchHHHHHHHHHHh
Q 007517 444 --------GRFHDVAELRKNMRK 458 (600)
Q Consensus 444 --------g~~~~a~~~~~~m~~ 458 (600)
+.++++.+.++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 556788887777664
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.00 E-value=0.0013 Score=64.96 Aligned_cols=139 Identities=12% Similarity=0.273 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCC--CCcchHHHHHHHHHhcCC
Q 007517 6 VVSWTAMVRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPE--KDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 6 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~ 83 (600)
..+|+.|..+..+.+...+|++.|-+. .|+..|..++....+.|.+++-.+.+....+ +++..-+.|+-+|++.|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 456888888888888888888776544 4666778888888888988888888876663 567777888888988887
Q ss_pred hHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC------------------------CCcchHHHHHHH
Q 007517 84 VDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE------------------------KNEVSWTAMLMG 139 (600)
Q Consensus 84 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------------p~~~t~~~ll~~ 139 (600)
+.+-.+++. .||+.-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+
T Consensus 132 L~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 132 LAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp SSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 666443322 35555556666666666666666665554432 355677777777
Q ss_pred HhcCCChHHH
Q 007517 140 YTQCGRIQDA 149 (600)
Q Consensus 140 ~~~~g~~~~a 149 (600)
|...+.+..|
T Consensus 209 Cvd~~EfrLA 218 (624)
T 3lvg_A 209 CVDGKEFRLA 218 (624)
T ss_dssp HHHSCTTTTT
T ss_pred HhCchHHHHH
Confidence 7776665544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0056 Score=61.62 Aligned_cols=101 Identities=10% Similarity=-0.052 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHhcC--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007517 335 LSACSYTGKVKEGREIFESMKSKY--LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AII 398 (600)
Q Consensus 335 l~a~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~ 398 (600)
+..+...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888887776432 12222 567888888999999999998888765 33454 446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQ-----LEPKNAGPYIL 435 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 435 (600)
++.|...|...|++++|+.+++++++ +.|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 88999999999999999999999887 47887655443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.98 E-value=0.0033 Score=63.22 Aligned_cols=94 Identities=17% Similarity=0.032 Sum_probs=70.9
Q ss_pred ccCCHHHHHHHHHHhHhcC--CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 007517 340 YTGKVKEGREIFESMKSKY--LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM---------PFEPD-AIIWGSLL 403 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll 403 (600)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4577888888887765421 12222 567888999999999999999988876 33455 44689999
Q ss_pred HHHHHcCCHHHHHHHHHHHhc-----cCCCCCchH
Q 007517 404 GACRTHMKLDLAEVAAKKLLQ-----LEPKNAGPY 433 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 433 (600)
..|...|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999887 478876443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.93 E-value=0.0024 Score=49.17 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=38.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 370 MVDLLGRAGQVEDAMKLIEAM-PFEP-DAI-IWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 370 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344556666666666666655 2223 344 566666666666666666666666666666665444
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.01 Score=57.34 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc----cC----CHHHHHHHHHHhHh
Q 007517 291 KDIVMWNSIISGYA--QYG---LGEKSLKVFHEMFSSGVMPDD-VTLVGVLSACSY----TG----KVKEGREIFESMKS 356 (600)
Q Consensus 291 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~----~g----~~~~a~~~~~~~~~ 356 (600)
.+..+|...+.+.. ..+ ...+|+.+|++..+. .|+. ..+..+..++.. .+ ......+.+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665543 222 347888888888874 6764 334333333320 00 00111111111111
Q ss_pred cCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 357 KYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 357 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
....+.+..+|..+.-.+...|++++|...++++ ...|+...|..+...+...|++++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112344555555555555556666666666655 334555555555555666666666666666666666654
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.86 E-value=0.0053 Score=51.02 Aligned_cols=65 Identities=6% Similarity=-0.077 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 394 PDAIIWGSLLGACRTHM---KLDLAEVAAKKLLQLE-P-KNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 394 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
++..+...+..++.+.+ +.++|..+++.+.+.+ | ++...+..|+-+|.+.|++++|+++++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45666666666666665 4557777777777666 5 3345666677777777777777777777665
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.81 E-value=0.0054 Score=47.05 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcC
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTE-HYACMVDLLGRAGQVEDAMKLIEAM-PFEPD-AIIWGSLLGACRTHM 410 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 410 (600)
....+...|++++|.+.|+...+.. +.+.. .+..+..+|.+.|++++|.+.|++. ...|+ ...|.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 3456677888999999988887742 33566 7888888888899999999888876 33343 222211 4
Q ss_pred CHHHHHHHHHHHhccCCCCC
Q 007517 411 KLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 411 ~~~~a~~~~~~~~~~~p~~~ 430 (600)
.+.++...+++....+|+++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 56667777777776666653
No 218
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.78 E-value=0.099 Score=41.74 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=97.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 304 AQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 304 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
.-.|..++..++..+.... .+..-++.++--....-+-+-..+.++.+-+.+.+ ..+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3456666777777766542 23344555554444444555555555555443322 356777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007517 384 MKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNVI 462 (600)
Q Consensus 384 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 462 (600)
..-+-.++ .+....+.-++....+|..+.-..+...++.-+|.+|....-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66666664 344555667788889999999999999977777777888999999999999999999999999999975
No 219
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.70 E-value=0.0054 Score=47.43 Aligned_cols=63 Identities=8% Similarity=0.036 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 007517 292 DIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMK 355 (600)
Q Consensus 292 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~ 355 (600)
+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555431 1122344444555555555555555555443
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.63 E-value=0.16 Score=55.86 Aligned_cols=152 Identities=12% Similarity=0.075 Sum_probs=91.1
Q ss_pred HHHHhCCChHHHHH-HHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHH
Q 007517 107 SGYVNNNRIDVARK-LFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFD 185 (600)
Q Consensus 107 ~~~~~~g~~~~A~~-~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 185 (600)
......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|++++|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 33445677777776 443332 122336666667777777777665421 1 122445667888888888877
Q ss_pred hcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhH
Q 007517 186 QMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVA 265 (600)
Q Consensus 186 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 265 (600)
.+. +...|..+...+.+.|+++.|...|.++.. |..+...+...++.+....+-......| -+
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~ 739 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KF 739 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CH
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------ch
Confidence 664 567888888888888888888888887643 2233333444555555544444444433 22
Q ss_pred HHHHHHHHHcCCHHHHHhhh
Q 007517 266 SVLITMYIKCGELVKGKLIF 285 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~ 285 (600)
+....+|.++|++++|.+++
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444566666666665543
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.50 E-value=8.1e-05 Score=73.17 Aligned_cols=259 Identities=12% Similarity=0.076 Sum_probs=180.6
Q ss_pred CcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCC--CCcccHHHHHHHHHhCC
Q 007517 36 NVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPK--KNVISWTTMISGYVNNN 113 (600)
Q Consensus 36 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g 113 (600)
.+.+|+.|..+....|++.+|+.-|-+ ..|+..|..+|....+.|.+++-.+.+....+ ++...=+.|+-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhC
Confidence 456788888888888888888776533 45777788889988899999988888776554 56666778888999988
Q ss_pred ChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCCh
Q 007517 114 RIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDD 192 (600)
Q Consensus 114 ~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~ 192 (600)
+..+-. +... ||..-...+.+-|...|.++.|+-+|..+. -|..|...+.+.|++..|.+.-++ ..++
T Consensus 131 rL~elE----efl~~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--Ans~ 199 (624)
T 3lvg_A 131 RLAELE----EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--ANST 199 (624)
T ss_dssp SSSTTT----STTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CCSS
T ss_pred cHHHHH----HHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cCCh
Confidence 865422 2222 888888888888888888888877775543 444555556667776666533222 2478
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 007517 193 ATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMY 272 (600)
Q Consensus 193 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 272 (600)
.+|-.+-.+|...+.+.-|.-.--.+. ....-+..++..|-..|.+++-..+++.-.... ......++-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 899999999999999887754332222 223344556667788888888888877766322 45778888898888
Q ss_pred HHcCCHHHHH---hhhh-hcCCC-------CHHHHHHHHHHHHhcCChHHHHH
Q 007517 273 IKCGELVKGK---LIFD-NFASK-------DIVMWNSIISGYAQYGLGEKSLK 314 (600)
Q Consensus 273 ~~~g~~~~A~---~~~~-~~~~~-------~~~~~~~li~~~~~~g~~~~A~~ 314 (600)
+|- +.++-. ++|- ++.-| ....|.-++-.|....+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 333333 3332 22222 44679999999998888887754
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.13 Score=56.52 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=30.6
Q ss_pred HHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007517 271 MYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 271 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 320 (600)
....+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3445666666666655543 44567777777777777777777776653
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.30 E-value=0.039 Score=53.32 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHhHhcCCCCCC-hHHHHHHHHHHh----hcC-------CHHHHHHH
Q 007517 324 VMPDDVTLVGVLSACSY--T---GKVKEGREIFESMKSKYLVEPK-TEHYACMVDLLG----RAG-------QVEDAMKL 386 (600)
Q Consensus 324 ~~p~~~t~~~ll~a~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 386 (600)
.+.+...|...+.+... . ....+|..+|++..+. .|+ ...|..+..+|. ..+ .+..|.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 35566677777766432 2 3468899999999874 565 445554443332 111 11223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 387 IEAMP-FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 387 ~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
...+. ...++.+|..+...+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 23332 2457888888887788889999999999999999975 5778899999999999999999999887643
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.19 E-value=0.014 Score=53.96 Aligned_cols=87 Identities=14% Similarity=0.131 Sum_probs=69.9
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CCchH
Q 007517 380 VEDAMKLIEAM-PFEPD---AIIWGSLLGACRT-----HMKLDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQ-GRFHD 448 (600)
Q Consensus 380 ~~~A~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 448 (600)
..+|...+++. .+.|+ ...|..|...|.+ .|+.++|.+.|+++++++|+. +.+++..+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45566666655 44565 5678888888888 499999999999999999975 89999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 007517 449 VAELRKNMRKRNVIKPPG 466 (600)
Q Consensus 449 a~~~~~~m~~~g~~~~~~ 466 (600)
+.+++++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866543344
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.09 E-value=0.034 Score=42.14 Aligned_cols=78 Identities=13% Similarity=0.071 Sum_probs=58.5
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHH
Q 007517 361 EPKTEHYACMVDLLGRAGQ---VEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYIL 435 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 435 (600)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4567788888888765554 68898888877 3345 46777778888999999999999999999999884 44444
Q ss_pred HHHH
Q 007517 436 LSNI 439 (600)
Q Consensus 436 l~~~ 439 (600)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.93 E-value=0.046 Score=45.38 Aligned_cols=85 Identities=19% Similarity=0.080 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHHH
Q 007517 344 VKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAG---QVEDAMKLIEAM-PFE-P--DAIIWGSLLGACRTHMKLDLAE 416 (600)
Q Consensus 344 ~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a~ 416 (600)
+..+++-|.+.... + +++..+...+..++.+.+ +++++..+++.. ... | +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555544442 2 356666666777777766 455777766665 212 4 2445667778889999999999
Q ss_pred HHHHHHhccCCCCC
Q 007517 417 VAAKKLLQLEPKNA 430 (600)
Q Consensus 417 ~~~~~~~~~~p~~~ 430 (600)
+.++++++.+|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999884
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.3 Score=41.56 Aligned_cols=129 Identities=11% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 007517 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGRE 349 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 349 (600)
+....+|+++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456789999998887766 4677899999999999999999999987642 3334444555677766665
Q ss_pred HHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007517 350 IFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKL 422 (600)
Q Consensus 350 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 422 (600)
+-+....+ | -++.-...+.-.|+++++.+++.+.+.-|....+ ...+|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~------A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAV------AKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH------HHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHH------HHHcCcHHHHHHHHHHh
Confidence 54444332 2 2445556667789999999988887633322221 23467777777776655
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.83 E-value=0.05 Score=42.21 Aligned_cols=73 Identities=18% Similarity=0.069 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchH
Q 007517 363 KTEHYACMVDLLGRAGQVEDAMKLIEAM-----P----FEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPY 433 (600)
Q Consensus 363 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 433 (600)
+..-+..|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556677777777777777776654 1 023467788999999999999999999999999999986553
Q ss_pred HH
Q 007517 434 IL 435 (600)
Q Consensus 434 ~~ 435 (600)
..
T Consensus 84 ~n 85 (104)
T 2v5f_A 84 GN 85 (104)
T ss_dssp HH
T ss_pred hh
Confidence 33
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.56 E-value=0.079 Score=42.27 Aligned_cols=85 Identities=20% Similarity=0.076 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHHcCCHHHH
Q 007517 343 KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVED---AMKLIEAM-PFE-P--DAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 343 ~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m-~~~-p--~~~~~~~ll~~~~~~g~~~~a 415 (600)
.+..+++-+...... + .|+..+--.+..++.+..+..+ +..+++.. ... | .....-.|.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444332 2 2555555555566666555444 55555544 111 2 112233344455555666666
Q ss_pred HHHHHHHhccCCCC
Q 007517 416 EVAAKKLLQLEPKN 429 (600)
Q Consensus 416 ~~~~~~~~~~~p~~ 429 (600)
.+.++.+++.+|++
T Consensus 94 ~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 94 LKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCCC
Confidence 66666666666655
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.27 E-value=1.1 Score=38.08 Aligned_cols=103 Identities=9% Similarity=0.020 Sum_probs=62.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQ 248 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 248 (600)
....++|+++.|.++.+++ .+...|..+.......|+++-|...|.+... +..+.-.+...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888877765 3567788888888888888888888876532 2333344445566555554
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhc
Q 007517 249 VHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 288 (600)
+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444444433 1233334444556666665555443
No 231
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.21 E-value=3.6 Score=43.04 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHH
Q 007517 307 GLGEKSLKVFHEMFSSG-VMPDDV--TLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDA 383 (600)
Q Consensus 307 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 383 (600)
.+.+.|..+|......+ +.+... ....+.......+...++...+...... .++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 322222 1222333334445355666666665432 23433444445555678999999
Q ss_pred HHHHHhCCCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 007517 384 MKLIEAMPFEP-D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQ 424 (600)
Q Consensus 384 ~~~~~~m~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 424 (600)
.+.|+.|+..+ + ..-.-=+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999995332 2 22122234566778999999999998875
No 232
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=94.61 E-value=1.5 Score=38.35 Aligned_cols=155 Identities=8% Similarity=0.097 Sum_probs=71.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCC
Q 007517 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCG 144 (600)
Q Consensus 65 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g 144 (600)
.+|.......+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+..-.+...+..++...-...+.++...+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33443333444444444443333333333333444333334444444444332222223232355555555555555555
Q ss_pred ChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 145 RIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
+.+....+...+..++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+.|. .++...+..+.+
T Consensus 105 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 105 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 544333444433355555555556666666554433344444444555555555555555554 345555555554
No 233
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.50 E-value=1.4 Score=38.74 Aligned_cols=171 Identities=8% Similarity=0.061 Sum_probs=76.7
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCC
Q 007517 65 EKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCG 144 (600)
Q Consensus 65 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g 144 (600)
.+|...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.+..+..-.+...+..+|...-...+.++...+
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 33333333344444444443333333333334444333334444444444322222222222255555555555555555
Q ss_pred ChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCc
Q 007517 145 RIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVR 224 (600)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 224 (600)
+.+....+...+..++..+....+.++.+.|..+....+.+.+.+++...-...+.++.+.+. .++...+..+.+.
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d--- 185 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAET--- 185 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC---
Confidence 544333333333355555555556666665554433334444444555555555555555554 3455555555543
Q ss_pred cCchhHhhHHHHHhh
Q 007517 225 VNFPSLISVLSVCAS 239 (600)
Q Consensus 225 p~~~t~~~ll~~~~~ 239 (600)
++...-...+.++..
T Consensus 186 ~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 186 GTGFARKVAVNYLET 200 (211)
T ss_dssp CCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHh
Confidence 333333344444433
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.50 E-value=1.1 Score=36.38 Aligned_cols=66 Identities=5% Similarity=-0.116 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 393 EPDAIIWGSLLGACRTHMK---LDLAEVAAKKLLQLEPKN-AGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.|+..+--.+..++.+..+ ..+++.+++.+....|.. -.....|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3455554445555555443 345666666666655532 23445566677777777777777776665
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.42 E-value=0.065 Score=49.60 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHHhHhcCCCCCC---hHHHHHHHHHHhhc-----CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHH-cCCH
Q 007517 345 KEGREIFESMKSKYLVEPK---TEHYACMVDLLGRA-----GQVEDAMKLIEAM-PFEPD--AIIWGSLLGACRT-HMKL 412 (600)
Q Consensus 345 ~~a~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~-~g~~ 412 (600)
..|...+++..+ +.|+ -..|..|...|.+. |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444444444443 3454 34566666666663 7777777777766 44452 5555556666655 3777
Q ss_pred HHHHHHHHHHhccCCC
Q 007517 413 DLAEVAAKKLLQLEPK 428 (600)
Q Consensus 413 ~~a~~~~~~~~~~~p~ 428 (600)
+.+.+.+++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776665
No 236
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.07 E-value=2.9 Score=36.75 Aligned_cols=179 Identities=11% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHH
Q 007517 88 REIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSM 167 (600)
Q Consensus 88 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 167 (600)
..+.+.+..+|...-...+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+...+..++..+....
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a 101 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 33444444455555445555555556543333333333336665555666666666655444444444446666666666
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHH
Q 007517 168 ILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGR 247 (600)
Q Consensus 168 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 247 (600)
+.++.+.|+.+....+.+.+.+++...-...+.++.+.|..+ ++..+..+.+ .++...-...+.++...+. ..+.
T Consensus 102 ~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~ 176 (211)
T 3ltm_A 102 AVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVR 176 (211)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHH
Confidence 677777776554445555555566655555666666666543 4444444432 2444445555556665555 3344
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHH
Q 007517 248 QVHAQLVRCQFDVDVYVASVLITMYIK 274 (600)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~li~~y~~ 274 (600)
..+..+.+. ++..+-...+.++.+
T Consensus 177 ~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 177 AAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred HHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 444444442 344444444444443
No 237
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=93.97 E-value=1.1 Score=39.18 Aligned_cols=179 Identities=8% Similarity=0.018 Sum_probs=112.5
Q ss_pred HHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHH
Q 007517 27 TLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMI 106 (600)
Q Consensus 27 ~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li 106 (600)
.+++.+..+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+....+.+.+..++...-...+
T Consensus 18 ~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~ 97 (201)
T 3ltj_A 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA 97 (201)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444555666666666677777666555555666666667666666777777777766666666666667776666677
Q ss_pred HHHHhCCChHHHHHHHhhcCCCCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 107 SGYVNNNRIDVARKLFEVMPEKNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~m~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
.++.+.+..+..-.+...+..+|...-...+.++...++.+....+...+..++..+....+.++.+.|..+....+.+.
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~ 177 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKL 177 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 77777777644444444444477777777777777777765555555555567777777888888888775443334444
Q ss_pred cccCChhhHHHHHHHHHHc
Q 007517 187 MREKDDATWSGMIKVYERK 205 (600)
Q Consensus 187 ~~~~~~~~~~~li~~~~~~ 205 (600)
+.+++...-...+.++.+.
T Consensus 178 l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 178 AETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHCCHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHH
Confidence 4455555544455554443
No 238
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.41 E-value=0.26 Score=37.99 Aligned_cols=65 Identities=17% Similarity=-0.001 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 395 DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLE-------PKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 395 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+...+..|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788889999999999999999988742 234566889999999999999999999998763
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.80 E-value=0.73 Score=36.66 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHhHhcCCCCC--ChHHHHHHHHHHhhcCCH
Q 007517 306 YGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKE---GREIFESMKSKYLVEP--KTEHYACMVDLLGRAGQV 380 (600)
Q Consensus 306 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~ 380 (600)
......+.+-|.+....|. |+..+-..+..++.++..... |..+++.+.+.. .| .....-.|.-++.|.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence 3344555666666555443 666655566667777776555 888888776641 23 234444566778888888
Q ss_pred HHHHHHHHhC-CCCCC
Q 007517 381 EDAMKLIEAM-PFEPD 395 (600)
Q Consensus 381 ~~A~~~~~~m-~~~p~ 395 (600)
++|.+.++.+ .++|+
T Consensus 91 ~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888888877 44554
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.71 E-value=0.88 Score=48.61 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=49.5
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 404 GACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 404 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
.-|...|+++.|+.+++++....|.+..++..|+.+|...|+|+.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44678899999999999999999999999999999999999999999998887
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.54 E-value=4.5 Score=32.43 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 295 MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 295 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
..+..+......|.-++-.+++.++.. +.+|++.....+..||.+.|+..++.+++.+..++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556667777777777777777533 24667777777777777778777777777777764
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.63 E-value=0.87 Score=36.43 Aligned_cols=68 Identities=13% Similarity=0.035 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 362 PKTEHYACMVDLLGRAGQVE---DAMKLIEAM-PFEP--DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 362 p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
|++.+--.+..++.+....+ ++..+++.. ...| ....+-.|.-++.+.|+++.|.+..+.+++.+|++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 44444444555555554432 344444433 1122 12233444445555555555555555555555555
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.44 E-value=21 Score=39.04 Aligned_cols=150 Identities=10% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCccCchhHhhHHH--HHhhhcchHHHHHHHHHHHHcCCCCchhhHH--HHHHHHHHcCC
Q 007517 202 YERKGYELEVIDLFTLMQKEGVRVNFPSLISVLS--VCASLASLDHGRQVHAQLVRCQFDVDVYVAS--VLITMYIKCGE 277 (600)
Q Consensus 202 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~ 277 (600)
|...|+.+-...++..+.... +......+.. ++...|+.+.+..+.+.+.... .|...... ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 334555555555555544321 2222222222 2335566666666666655432 22222222 23334556666
Q ss_pred HHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHH
Q 007517 278 LVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKV-KEGREIFES 353 (600)
Q Consensus 278 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~ 353 (600)
.....+++..+.+ .++...-.+.-|+...|+.+.+.+++..+.+.+ .|....-..+.-+....|.. .++...+..
T Consensus 576 ~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 576 NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 6666556655432 122222222234444565555566665554432 33332222222222223332 455666666
Q ss_pred hHh
Q 007517 354 MKS 356 (600)
Q Consensus 354 ~~~ 356 (600)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 654
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.03 E-value=1.9 Score=35.32 Aligned_cols=50 Identities=20% Similarity=0.006 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 410 MKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 410 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+|.++|..+|+.++++...-+..+...+.-=.++|+...|++++......
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 56666666666665553333333444444445666666666666665543
No 245
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.66 E-value=8.3 Score=28.83 Aligned_cols=87 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655543 22232233445667899999999999999999999988755 467888888888888877
Q ss_pred CCCCCCHHHHHH
Q 007517 322 SGVMPDDVTLVG 333 (600)
Q Consensus 322 ~g~~p~~~t~~~ 333 (600)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 666666644
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.44 E-value=7.9 Score=31.74 Aligned_cols=106 Identities=11% Similarity=0.114 Sum_probs=62.7
Q ss_pred cCChhhHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCccCchh----HhhHHHH---HhhhcchHHHHHHHHHHHH
Q 007517 189 EKDDATWSGMIKVYERKGYE------LEVIDLFTLMQKEGVRVNFPS----LISVLSV---CASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 189 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t----~~~ll~~---~~~~~~~~~a~~~~~~~~~ 255 (600)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... |.-+.-- +...++.+.|+++|..+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44788888888888888998 8888888887764 5665321 1111111 1223556666666655554
Q ss_pred cCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007517 256 CQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPD 327 (600)
Q Consensus 256 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 327 (600)
.. + +=...|-.-..--.++|+...|.+++.+.+..+.+|.
T Consensus 89 ~h-K-------------------------------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NC-K-------------------------------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HC-T-------------------------------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred Hh-H-------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 31 1 1123344444444567777777777777776655544
No 247
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.18 E-value=8.9 Score=28.72 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007517 242 SLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFS 321 (600)
Q Consensus 242 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 321 (600)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||+..|-+|-. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34566666666655542 22222233445667899999999999999999999988755 356777788877778776
Q ss_pred CCCCCCHHHHHH
Q 007517 322 SGVMPDDVTLVG 333 (600)
Q Consensus 322 ~g~~p~~~t~~~ 333 (600)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 565555543
No 248
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=85.09 E-value=23 Score=32.42 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=122.8
Q ss_pred hhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCCh----HHHHHHHhh--CCCCCcccHH
Q 007517 30 WQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRV----DEGREIFDE--MPKKNVISWT 103 (600)
Q Consensus 30 ~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~--m~~~~~~~~~ 103 (600)
..+..+|..+-...+.++.+.|..+....+...+..++.......+.++.+.|.. .....++.. ..+++...-.
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~ 109 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRA 109 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHH
Confidence 3334556655555666666666544444455555566666666666677766643 223334432 2245555545
Q ss_pred HHHHHHHhCCC-----hHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcC--
Q 007517 104 TMISGYVNNNR-----IDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNG-- 175 (600)
Q Consensus 104 ~li~~~~~~g~-----~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g-- 175 (600)
..+.++.+.+. ...+...+..+.. ++...-...+.++...++.+....+...+..++..+....+.+..+.|
T Consensus 110 ~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 110 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC
Confidence 55555555441 3455565555544 777777777788887776543344444444677777777777777765
Q ss_pred CHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 176 EVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 176 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
..+....+.+.+.+++...-...+.++.+.|+.. ++..+..+.+. |+ .-...+.++...|.. .+...+..+.+
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 3333344445555667777777777888888654 44444444432 33 234456677777764 44455555544
Q ss_pred c
Q 007517 256 C 256 (600)
Q Consensus 256 ~ 256 (600)
.
T Consensus 263 ~ 263 (280)
T 1oyz_A 263 K 263 (280)
T ss_dssp T
T ss_pred c
Confidence 3
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.38 E-value=14 Score=29.47 Aligned_cols=73 Identities=10% Similarity=0.050 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 007517 323 GVMPDDVTLVGVLSACSYTG---KVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM-PFEPDA 396 (600)
Q Consensus 323 g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 396 (600)
+-.|+..|--....++.++. +..+|..+++.+.+.. -.-..+..--|.-++.|.|++++|.+..+.+ .++|+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 33455554444444555554 3456777777776642 1112445555667777888888888887776 556653
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.82 E-value=2.5 Score=41.53 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCc
Q 007517 400 GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK-----RNVIKPPG 466 (600)
Q Consensus 400 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~ 466 (600)
..++.++...|+.+++...++.++..+|-+...+..++.+|...|+..+|.+.|+...+ .|+.|.|.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556677788888888888888888888877888888888888888888888877643 47665554
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.80 E-value=30 Score=32.74 Aligned_cols=182 Identities=13% Similarity=0.043 Sum_probs=105.0
Q ss_pred HHHhcCCCh---HHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH
Q 007517 138 MGYTQCGRI---QDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL 214 (600)
Q Consensus 138 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 214 (600)
......|++ =+|.+. +.++..-|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 344455676 445444 356777788889999888876542 2334555665544443
Q ss_pred H----HHHHHcCCccCchhHhhHHHHHhhhcch-----HHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHh
Q 007517 215 F----TLMQKEGVRVNFPSLISVLSVCASLASL-----DHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKL 283 (600)
Q Consensus 215 ~----~~m~~~g~~p~~~t~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~ 283 (600)
- +-..+.++++|..+...++..+.....- .-..+...+-.+.| ..-|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3 4445567777777766666666544321 11222233333333 34567788889999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh
Q 007517 284 IFDNFASKDIVMWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS 356 (600)
Q Consensus 284 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~ 356 (600)
.|-.-..+....+..|+.-+...+... .+|.+.-..+|. |...+++..|..+++...+
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 885323223356655554444433221 122223333443 3446788888887766554
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.01 E-value=17 Score=29.40 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=47.1
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCC
Q 007517 361 EPKTEHYACMVDLLGRAGQVE---DAMKLIEAM-PFEP-D-AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNA 430 (600)
Q Consensus 361 ~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 430 (600)
.|+..+--.+..++.+..+.+ ++..+++.. ...| + ....-.|.-++.+.|++++|.++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 455666555666666665543 455555554 1123 2 33445566789999999999999999999999983
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=82.62 E-value=32 Score=32.23 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=106.1
Q ss_pred HhcCCChHHHHHHHhhCCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHHHHH----H
Q 007517 140 YTQCGRIQDAWELFKAMPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEVIDL----F 215 (600)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~ 215 (600)
....|++=+|.+.+ .++..-|.+.+++++|.+++..- ...+.+.|+...|-++ .
T Consensus 23 ~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHH
Confidence 34456666665554 56777788888888888776542 2334555665554443 4
Q ss_pred HHHHHcCCccCchhHhhHHHHHhhhc-----chHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHHcCCHHHHHhhhhhc
Q 007517 216 TLMQKEGVRVNFPSLISVLSVCASLA-----SLDHGRQVHAQLVRCQ--FDVDVYVASVLITMYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 216 ~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 288 (600)
+-..+.++++|..+...++..+.... +..-.........+.| ..-++.....+...|.+.|++.+|+..|-.-
T Consensus 81 ev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~ 160 (312)
T 2wpv_A 81 EVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG 160 (312)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC
Confidence 44455677777777766666654422 1122223333333333 2347788888999999999999999887643
Q ss_pred CCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhc
Q 007517 289 ASKDIVMWNSIISGYAQY---GLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSK 357 (600)
Q Consensus 289 ~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~ 357 (600)
...+...+..|+.-+... |...++-- ..-..++. +...|++..|..+|+...++
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 333555665555544443 43333211 12222332 33468888888888876543
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.29 E-value=38 Score=32.93 Aligned_cols=57 Identities=7% Similarity=-0.066 Sum_probs=27.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+...+...|++.+|.+++..+.+...-..+ .++|..-+.+|...|++.++...+...
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444555555555555555555442110001 334445555555666666555555443
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.12 E-value=41 Score=36.84 Aligned_cols=146 Identities=10% Similarity=0.075 Sum_probs=63.3
Q ss_pred hhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH--HcCCHHHHHhhhhhcCC-CCH-HHHH---HHHHHHHhcCChHH
Q 007517 239 SLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYI--KCGELVKGKLIFDNFAS-KDI-VMWN---SIISGYAQYGLGEK 311 (600)
Q Consensus 239 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~--~~g~~~~A~~~~~~~~~-~~~-~~~~---~li~~~~~~g~~~~ 311 (600)
..|+-+....++..+.+.. +..+...++.+++ -.|+.+.+..+.+.+.. .|. +-|. ++.-+|+..|+...
T Consensus 502 GTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 502 GTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp TCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred ccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4455555555555555422 2222222333332 45666655555555432 222 2232 22334556666544
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhC
Q 007517 312 SLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQV-EDAMKLIEAM 390 (600)
Q Consensus 312 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 390 (600)
..++++.+.... ..+......+--++...|+.+.+.++++.+...+ .|.+..-.++.-+....|.. .+|.+++..+
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L 655 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 445666666531 1111111111123333455555555555444321 34443333343333334432 4555555555
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.36 E-value=7 Score=29.40 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.-+..+-++.+....+.|+.....+.|.||-+..++..|.++|+.++.+-+ +...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 446666777777778899999999999999999999999999999887643 34556777665
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.11 E-value=46 Score=33.07 Aligned_cols=184 Identities=10% Similarity=0.080 Sum_probs=116.4
Q ss_pred cCChHHHHHHHHHHHHc-----CCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc-CCCCchhhHHHHHH----HHHH
Q 007517 205 KGYELEVIDLFTLMQKE-----GVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC-QFDVDVYVASVLIT----MYIK 274 (600)
Q Consensus 205 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~----~y~~ 274 (600)
.|++++|++.+..+.+. ...........++..|...++++...+.+..+.+. |.. ......+++ ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 37889999988777653 22333445777888999999999887777666543 322 222233333 2223
Q ss_pred cCCHH--HHHhhhhhcCC---C-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHH
Q 007517 275 CGELV--KGKLIFDNFAS---K-------DIVMWNSIISGYAQYGLGEKSLKVFHEMFSS--GVMPDD---VTLVGVLSA 337 (600)
Q Consensus 275 ~g~~~--~A~~~~~~~~~---~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a 337 (600)
....+ .-..+.+.... . .......|...|-..|++.+|.+++.++... |..+.. ..+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33322 22233333222 1 1123456778889999999999999998643 322221 245556778
Q ss_pred HhccCCHHHHHHHHHHhHhcC-CCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 338 CSYTGKVKEGREIFESMKSKY-LVEPK----TEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 338 ~~~~g~~~~a~~~~~~~~~~~-~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
|...+++..|..++.++.... ...+. ...|.+++..+...+++.+|.+.|.+.
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 889999999999998874321 11222 346788888888999999988877664
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=79.94 E-value=6.5 Score=41.99 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=21.9
Q ss_pred HcCCHHHHHhhhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007517 274 KCGELVKGKLIFDNFAS---KDIVMWNSIISGYAQYGLGEKSLKVFHEM 319 (600)
Q Consensus 274 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 319 (600)
..|+++.|+++-++... .+-.+|..|...|...|+++.|+-.++.+
T Consensus 349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34555555554444321 23445555555555555555555444443
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.54 E-value=11 Score=36.97 Aligned_cols=67 Identities=6% Similarity=0.076 Sum_probs=34.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHh----cCCCCCChHH
Q 007517 299 IISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKS----KYLVEPKTEH 366 (600)
Q Consensus 299 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~ 366 (600)
++..+...|++++|+..+..+... -+-+...+..++.++...|+..+|.+.|+...+ +.|+.|...+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 444555556666666555555443 123444555556666666666666555554432 2345554433
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=79.07 E-value=8.2 Score=32.20 Aligned_cols=113 Identities=6% Similarity=0.023 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCHHHHHhhhhhcCC-----CCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH-HH
Q 007517 267 VLITMYIKCGELVKGKLIFDNFAS-----KDI-------VMWNSIISGYAQYGLGEKSLKVFHEMFSSG-VMPDDVT-LV 332 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t-~~ 332 (600)
.=+..+...|.++.|+-+.+.+.. +++ .+...+..++...|++.+|...|++..+.. .-|...+ ..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345666777888888776665432 221 244556677777888888888888764321 1111111 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 007517 333 GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFE 393 (600)
Q Consensus 333 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 393 (600)
++- ...... ......++.+.---+...|.+.|++++|+.+++.+|.+
T Consensus 105 ~~~----~~ss~p----------~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 STG----NSASTP----------QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccc----ccCCCc----------ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 110 000000 00012234445455777888888888888888888533
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.93 E-value=44 Score=31.56 Aligned_cols=166 Identities=12% Similarity=0.064 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHHhcc
Q 007517 266 SVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKVF----HEMFSSGVMPDDVTLVGVLSACSYT 341 (600)
Q Consensus 266 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~ 341 (600)
.++..=|.+.+++++|.+++-.- ...+.++|+..-|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 34555577788888887765322 23455566655544443 4455667788887777777766655
Q ss_pred CCHHHH-HHHHHHhHh---cCC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007517 342 GKVKEG-REIFESMKS---KYL--VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLA 415 (600)
Q Consensus 342 g~~~~a-~~~~~~~~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 415 (600)
..-+-. ..+.+.+.+ +.| -.-++.....+...|.+.|++.+|..-|- .+-.+.+..+..++..+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~---- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE---- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC----
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC----
Confidence 431111 112222211 112 23467778889999999999999998884 3434445677666655554443
Q ss_pred HHHHHHHhccCCCCCchHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 007517 416 EVAAKKLLQLEPKNAGPYIL-LSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 416 ~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
|.....|.. .+--|...|+...|...++...+
T Consensus 183 -----------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -----------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222233332 34446677888999887766654
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.40 E-value=51 Score=37.47 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=12.4
Q ss_pred HHHHHHHHcCCHHHHHhhhhhc
Q 007517 267 VLITMYIKCGELVKGKLIFDNF 288 (600)
Q Consensus 267 ~li~~y~~~g~~~~A~~~~~~~ 288 (600)
.+..+|..+|++++|...|.+.
T Consensus 847 l~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 847 LKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555566666666666543
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=76.33 E-value=16 Score=30.52 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=56.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCC-------hHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHH
Q 007517 331 LVGVLSACSYTGKVKEGREIFESMKSKYLVEPK-------TEHYACMVDLLGRAGQVEDAMKLIEAM-----PFEPDAII 398 (600)
Q Consensus 331 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~ 398 (600)
+..-+..+...|.++.|+-+.+.+....+.+|+ ..++..+.+++...|++..|...|++. .+..+...
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344455566667777777666554432222233 124555666677777777776666653 00001100
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 007517 399 WGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNM 456 (600)
Q Consensus 399 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 456 (600)
..++. . ...... -..+ +.+...-.-++.+|.+.|++++|..+++.+
T Consensus 103 ~~~~~-~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccc-c---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 10000 0 000000 0001 112244566899999999999999998754
No 264
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.57 E-value=50 Score=29.98 Aligned_cols=216 Identities=10% Similarity=0.004 Sum_probs=115.3
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCCh----HHHHHHHhh-c-CCCCcchHHH
Q 007517 62 MMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRI----DVARKLFEV-M-PEKNEVSWTA 135 (600)
Q Consensus 62 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~-m-~~p~~~t~~~ 135 (600)
.+..+|...-..-+..+.+.|..+....+.+.+..++...-...+.++.+.|.. ...+.++.. + ..++...-..
T Consensus 31 ~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~ 110 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRAT 110 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHH
Confidence 334455555555555666666544333444444456655545555666666642 223334432 2 2266666666
Q ss_pred HHHHHhcCCC-----hHHHHHHHhh-CCCCCccchhHHHHHHHhcCCHHHHHHHHHhcccCChhhHHHHHHHHHHcC-Ch
Q 007517 136 MLMGYTQCGR-----IQDAWELFKA-MPMKSVVASNSMILGLGQNGEVQKARVVFDQMREKDDATWSGMIKVYERKG-YE 208 (600)
Q Consensus 136 ll~~~~~~g~-----~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~ 208 (600)
.+.++...+. ...+...+.. +..++..+....+.+..+.|+.+..-.+.+.+.+++...-...+.+..+.| ..
T Consensus 111 a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~ 190 (280)
T 1oyz_A 111 AIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 190 (280)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc
Confidence 6666665541 2233333333 337777777778888888877543444445555666655555566666555 24
Q ss_pred HHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHcCCHHHHHhhhhh
Q 007517 209 LEVIDLFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRCQFDVDVYVASVLITMYIKCGELVKGKLIFDN 287 (600)
Q Consensus 209 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 287 (600)
..+...+..+.. .++...-...+.++...|+......+...+ +. ++ +-...+.++.+.|.. .+...+..
T Consensus 191 ~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l-~d---~~--vr~~a~~aL~~i~~~-~~~~~L~~ 259 (280)
T 1oyz_A 191 SDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDEL-KK---NT--VYDDIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHH-TS---SS--CCHHHHHHHHHHCCG-GGHHHHHH
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHh-cC---cc--HHHHHHHHHHhcCch-hhhHHHHH
Confidence 456666655543 345555566677777777655444444443 22 23 334556777777774 34444433
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.54 E-value=23 Score=40.27 Aligned_cols=122 Identities=4% Similarity=-0.117 Sum_probs=78.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC----------------
Q 007517 333 GVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEP---------------- 394 (600)
Q Consensus 333 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p---------------- 394 (600)
.++..+...+..+.+.++..-. +.++..--.+..+|..+|++++|.+.|++. ++.+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 3445555666666665544322 223333345666777888888888888776 1111
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCCc----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 395 -------DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEP-KNAG----PYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 395 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
-..-|..++..+.++|.++.+.++.+.+++..+ +++. .|..+.+.+...|++++|-..+-.+.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 112356677778888999999988888887543 3321 46667788888899999988887776543
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.29 E-value=25 Score=26.44 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=37.4
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 389 AMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 389 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
.+.+-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|-.+
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 336679999999999999999999999999998876443333445554
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.92 E-value=26 Score=26.30 Aligned_cols=49 Identities=4% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC
Q 007517 77 GYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE 127 (600)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
.+...|++++|..+.+...-||.+.|.+|-.. +.|..+++...+.++..
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34455666666666666666666666555442 44555555554444433
No 268
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.80 E-value=52 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=21.8
Q ss_pred ccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 340 YTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 340 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
+.|.++++++....-.+.. +-|...-..|++.|+-.|+++.|.+-++..
T Consensus 9 ~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3444444444444433321 334444444445555555555554444433
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.05 E-value=77 Score=31.43 Aligned_cols=142 Identities=11% Similarity=0.079 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHhccc-----C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHc-CCccCchhHhhHHHHH----hhh
Q 007517 175 GEVQKARVVFDQMRE-----K----DDATWSGMIKVYERKGYELEVIDLFTLMQKE-GVRVNFPSLISVLSVC----ASL 240 (600)
Q Consensus 175 g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~----~~~ 240 (600)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+.-+.+. |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 677888777655432 1 2344677888999999999888877766543 322222 23333333 223
Q ss_pred cchHHHHHHHHHHHHc--CCCC--------chhhHHHHHHHHHHcCCHHHHHhhhhhcCC-----C----CHHHHHHHHH
Q 007517 241 ASLDHGRQVHAQLVRC--QFDV--------DVYVASVLITMYIKCGELVKGKLIFDNFAS-----K----DIVMWNSIIS 301 (600)
Q Consensus 241 ~~~~~a~~~~~~~~~~--~~~~--------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~ 301 (600)
...+.... ...... .... ...+...|...|...|++.+|..++..+.. . -+..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 32222111 111111 1111 123345688899999999999998887642 1 2356677788
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 007517 302 GYAQYGLGEKSLKVFHEMF 320 (600)
Q Consensus 302 ~~~~~g~~~~A~~~~~~m~ 320 (600)
.|...+++.+|..++++..
T Consensus 186 l~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 8999999999999998864
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.45 E-value=15 Score=29.30 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHH
Q 007517 309 GEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVD 372 (600)
Q Consensus 309 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~ 372 (600)
.-+..+-++.+....+.|+.......|.||-+..++..|.++|+.++.+-| +...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 335666667777778899999999999999999999999999999987643 44666777765
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.24 E-value=97 Score=32.24 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=97.0
Q ss_pred CCHHHHHhhhhhcCC---CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 007517 276 GELVKGKLIFDNFAS---KDIV----MWNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGKVKEGR 348 (600)
Q Consensus 276 g~~~~A~~~~~~~~~---~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 348 (600)
.+.+.|...|..... -+.. .+..+...+...+...++...+...... .++.....-.+....+.|+++.+.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 378999999976632 1222 3333333444455456777777776554 334333333444445679999999
Q ss_pred HHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 007517 349 EIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPK 428 (600)
Q Consensus 349 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 428 (600)
+.|..|.... .....-.--+..++.+.|+.++|..+|+.+. .+. +|-.++.+- +.|.... . ......+.
T Consensus 306 ~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a-~~~--~fYg~lAa~-~Lg~~~~-~----~~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLM-QQR--GFYPMVAAQ-RIGEEYE-L----KIDKAPQN 374 (618)
T ss_dssp HHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSC--SHHHHHHHH-HTTCCCC-C----CCCCCCSC
T ss_pred HHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHh-cCC--ChHHHHHHH-HcCCCCC-C----CCCCCChh
Confidence 9999986531 1234434456778889999999999999984 232 343344332 2221100 0 00011111
Q ss_pred CC-----chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 429 NA-----GPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 429 ~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
.. ..-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 11 1123445667788999998887777654
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=72.16 E-value=24 Score=26.38 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHhhcCC
Q 007517 77 GYCQDGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVARKLFEVMPE 127 (600)
Q Consensus 77 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
.+...|++++|..+.+...-||.+.|.+|-. .+.|..+++...+.++..
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 3455666777766666666666666666544 355555555555544443
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.39 E-value=77 Score=30.30 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=45.7
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCccCchh
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKGY--ELEVIDLFTLMQKEGVRVNFPS 229 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t 229 (600)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+....++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3678888999999999999999998763 3334455555554433 3457788888887776544433
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=68.82 E-value=49 Score=34.70 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhCCChHHHHHHHhhcCC-CC--cchHHHHHHHHh
Q 007517 101 SWTTMISGYVNNNRIDVARKLFEVMPE-KN--EVSWTAMLMGYT 141 (600)
Q Consensus 101 ~~~~li~~~~~~g~~~~A~~~~~~m~~-p~--~~t~~~ll~~~~ 141 (600)
.|- +|--+.++|+.++|.++.++... .+ ...|...+..++
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 454 44456777777777777766644 21 135555555555
No 275
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=67.27 E-value=78 Score=29.58 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=42.0
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007517 391 PFEPD--AIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKR 459 (600)
Q Consensus 391 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 459 (600)
+++|. ..+..+-++.+.+++++..|..+.++++++.|... ..++|.++...-.+.
T Consensus 200 ~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 200 KLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 56665 34577778889999999999999999999998532 235677777766554
No 276
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=64.72 E-value=57 Score=30.45 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=37.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCccC
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGY--ELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 226 (600)
+.++.-|...|+.++|.+.++++..| ..+....+..+.-+.++ .+.+..++..+.+.|+-+.
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 45777777788888888888887655 12233344444444322 2445567777776665433
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.35 E-value=54 Score=28.30 Aligned_cols=102 Identities=19% Similarity=0.212 Sum_probs=65.4
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 007517 382 DAMKLIEAM-PFEPDAI---IWGSLLGACRTHMKLDLAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKN 455 (600)
Q Consensus 382 ~A~~~~~~m-~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 455 (600)
.+.+.|... ..+.|+. .|-..+..| ..++...+..+|..|.. +.-..+..|...+..+...|++++|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334444443 2344544 454444443 24446788888888876 4555667788999999999999999999998
Q ss_pred HHhCCCccCCceeEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHHHHHHHcCcc
Q 007517 456 MRKRNVIKPPGCSWIEVEKKVHMFTGRDCVSHPEHPMIMRMLEKIGGLLREAGYC 510 (600)
Q Consensus 456 m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 510 (600)
-.+++-. | .+.......+...+|.+.+++
T Consensus 141 GI~~~A~-------------------------P-~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCR-------------------------P-YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCB-------------------------S-HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCc-------------------------c-HHHHHHHHHHHHHHHHhcCCC
Confidence 7766532 2 223444555667777777763
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=64.05 E-value=52 Score=26.03 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=43.2
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCccC
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGY--ELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 226 (600)
.+.++.-|...|+.++|.+.++++..| ..+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356788899999999999999998765 22334445555555432 3567778888877765443
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=64.01 E-value=11 Score=34.24 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=42.3
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCC
Q 007517 372 DLLGRAGQVEDAMKLIEAM-PFEP-DAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKN 429 (600)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 429 (600)
..+.+.|++++|++....- .-.| |...-..|+.-++..|++++|..-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 3456778888888776544 2244 56666677788888888888888888888888865
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.41 E-value=58 Score=26.01 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=38.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007517 388 EAMPFEPDAIIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILL 436 (600)
Q Consensus 388 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 436 (600)
-.+.+-|++.+..+-+.+|++.+|+..|.++++-....-.+....|-.+
T Consensus 80 ~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~ 128 (152)
T 2y69_E 80 VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 128 (152)
T ss_dssp TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 3446789999999999999999999999999998876433333445554
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=61.92 E-value=1e+02 Score=28.73 Aligned_cols=168 Identities=9% Similarity=-0.005 Sum_probs=98.5
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYAQYGLGEKSLKV----FHEMFSSGVMPDDVTLVGVLSACSY 340 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 340 (600)
+.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 344555677778888887765432 2345566776555553 4555566788888777777766654
Q ss_pred cCCHH-HHHHHHHHhH----hcCC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CC
Q 007517 341 TGKVK-EGREIFESMK----SKYL-VEPKTEHYACMVDLLGRAGQVEDAMKLIEAMPFEPDAIIWGSLLGACRTH---MK 411 (600)
Q Consensus 341 ~g~~~-~a~~~~~~~~----~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~---g~ 411 (600)
...-+ .=.++.+.+. +..+ -.-++.....+...|.+.|++.+|..-|-. +-.-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 1122222222 1111 124678888999999999999999987762 2112455666666555544 54
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007517 412 LDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRK 458 (600)
Q Consensus 412 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 458 (600)
..++..+.- ..+--|...|+...|..+++...+
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 444322221 123345577888899988887653
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=61.16 E-value=1.2e+02 Score=29.35 Aligned_cols=222 Identities=11% Similarity=0.067 Sum_probs=108.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCchh-----HhhHHHHHhhhcchHHHHHHHHHHHHc--CCCCchhhHHHHH
Q 007517 197 GMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS-----LISVLSVCASLASLDHGRQVHAQLVRC--QFDVDVYVASVLI 269 (600)
Q Consensus 197 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li 269 (600)
-++..|...|++.+|+.++.++.+.=-+.|..+ +..-+..+...+++.+++..+...... .+.+++.+. +.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHH
Confidence 467788888888888888888876422233222 223334455556666666655554432 111222211 111
Q ss_pred HHHHHcCCHHHHHhhhhhcCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHC---CCCCC---HHHHHHHHHHHhccC
Q 007517 270 TMYIKCGELVKGKLIFDNFASKDIVMWNSIISGYA-QYGLGEKSLKVFHEMFSS---GVMPD---DVTLVGVLSACSYTG 342 (600)
Q Consensus 270 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~---g~~p~---~~t~~~ll~a~~~~g 342 (600)
+.++ ...+. ..+++.+|...|-+..+. -..|. ...|. ++.+.....
T Consensus 183 ~~~~--------------------------Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl-vL~aLl~~~ 235 (394)
T 3txn_A 183 DLQS--------------------------GILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM-LLCKIMLGQ 235 (394)
T ss_dssp HHHH--------------------------HHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-HHHHHHTTC
T ss_pred HHHh--------------------------hHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHcCC
Confidence 1111 11233 445555555555443210 00121 12232 222222222
Q ss_pred CHHHHHHHH-HHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHH---HHHHHHHHHcCCHHHHH
Q 007517 343 KVKEGREIF-ESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPDAIIW---GSLLGACRTHMKLDLAE 416 (600)
Q Consensus 343 ~~~~a~~~~-~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~---~~ll~~~~~~g~~~~a~ 416 (600)
..+- ..++ +.....+ ..|....+..++.+| +.+++.+..++++.. .+..|.... ..|......
T Consensus 236 r~el-~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~-------- 304 (394)
T 3txn_A 236 SDDV-NQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE-------- 304 (394)
T ss_dssp GGGH-HHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------
T ss_pred HHHH-HHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------
Confidence 2222 2222 1211222 246666666677665 556787777777766 244565532 112111111
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 417 VAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 417 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
..+.++ ..|-....+..++..+.- ..+++...+-+|...|.
T Consensus 305 ~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 111111 356666778888877754 57899999999987764
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.51 E-value=55 Score=32.32 Aligned_cols=58 Identities=12% Similarity=-0.034 Sum_probs=41.4
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHhcccC------ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQMREK------DDATWSGMIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
+...+...|.+.|+++.|.+.|.++... -+..+-..|..+...+++..+...+.+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5566778888888888888888777632 234566677777777888877777777643
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.99 E-value=1.1e+02 Score=27.80 Aligned_cols=142 Identities=10% Similarity=0.011 Sum_probs=64.0
Q ss_pred HHHHHcCCCHHHHHHHHccCCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHH
Q 007517 44 LGGFIRDSRIDDARRLFDMMPEKDVVAQTNMVLGYCQDGRVDEGREIFDEMPKK---NVISWTTMISGYVNNNRIDVARK 120 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 120 (600)
+...+..|+.+-+..+++.-...+...-.+.+...++.|+.+-+..+++.-..+ |..-++.|. ..+..|+.+-+.-
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~ 113 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTVKL 113 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHHHH
Confidence 344455677777766666533322222233444455666666666666543332 222223332 2334555554444
Q ss_pred HHhhcCC---CCcchHHHHHHHHhcCCChHHHHHHHhhCC-CCCccchhHHHHHHHhcCCHHHHHHHHHh
Q 007517 121 LFEVMPE---KNEVSWTAMLMGYTQCGRIQDAWELFKAMP-MKSVVASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 121 ~~~~m~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
+++.-.. .|..-+.+.+...+..|+.+-...+++.-. ..+.....+.+...+..|..+-+.-+++.
T Consensus 114 Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 4443222 222222233333444555555555554433 11111233444444555555555555443
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.32 E-value=55 Score=32.29 Aligned_cols=55 Identities=13% Similarity=-0.049 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHcCCHHHHHhhhhhcCC------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007517 264 VASVLITMYIKCGELVKGKLIFDNFAS------KDIVMWNSIISGYAQYGLGEKSLKVFHE 318 (600)
Q Consensus 264 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 318 (600)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+...+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~k 193 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEA 193 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 334455555555555555555544432 1123333344444444444444444444
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=55.19 E-value=95 Score=28.26 Aligned_cols=173 Identities=12% Similarity=0.033 Sum_probs=99.9
Q ss_pred HHHHHhCCChHHHHHHHhhCCCCCcchHHHHHHHHHcCCCHHHHHHHHccCCCC---CcchHHHHHHHHHhcCChHHHHH
Q 007517 13 VRGYVEEGMITEAGTLFWQMPEKNVVSWTVMLGGFIRDSRIDDARRLFDMMPEK---DVVAQTNMVLGYCQDGRVDEGRE 89 (600)
Q Consensus 13 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~ 89 (600)
+...+..|+.+-+..+++.-..++.....+.+...+..|+.+-+..+++.-..+ |..-++. +...+..|+.+-+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHH
Confidence 444556788887777777644333322344566677889998888888765433 2323333 444567788888888
Q ss_pred HHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHhhcCC-CCcchHHHHHHHHhcCCChHHHHHHHhhCC---CCCcc
Q 007517 90 IFDEMPK---KNVISWTTMISGYVNNNRIDVARKLFEVMPE-KNEVSWTAMLMGYTQCGRIQDAWELFKAMP---MKSVV 162 (600)
Q Consensus 90 ~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~ 162 (600)
+++.-.. ++..-|.+.+...+..|+.+-+.-+++.-.. .+...-.+.+...+..|+.+-+.-+++.-. ..+..
T Consensus 114 Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~ 193 (285)
T 3kea_A 114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL 193 (285)
T ss_dssp HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCC
T ss_pred HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCC
Confidence 8876433 2333334455556677887766666655433 233233445555667788887777765533 22323
Q ss_pred chhHHHHHHHhcCCHHHHHHHHHh
Q 007517 163 ASNSMILGLGQNGEVQKARVVFDQ 186 (600)
Q Consensus 163 ~~~~li~~~~~~g~~~~A~~~f~~ 186 (600)
-.+..+...++.|+.+-+.-+++.
T Consensus 194 g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 194 LFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp BCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred CCChHHHHHHHcCCHHHHHHHHHc
Confidence 333334444555665554444443
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=53.01 E-value=54 Score=25.93 Aligned_cols=65 Identities=12% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKD---IVMWNSIISGYAQYGL--GEKSLKVFHEMFSSGVMPDDV 329 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 329 (600)
.+.++.-|...|+.++|.+.++++..|. .....++..++-+.+. -+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567888888899999999999887652 3444555555555432 356777888887777544433
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=52.76 E-value=59 Score=26.63 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=42.5
Q ss_pred hhHHHHHHHhcCCHHHHHHHHHhcccC---ChhhHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCccC
Q 007517 164 SNSMILGLGQNGEVQKARVVFDQMREK---DDATWSGMIKVYERKGY--ELEVIDLFTLMQKEGVRVN 226 (600)
Q Consensus 164 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 226 (600)
.+.++.-|...|+.++|.+.++++..| ..+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356888899999999999999998765 22334445555555332 3456778888877765443
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.73 E-value=73 Score=32.15 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=34.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCCc-ccHHH-------HHHHHHhCCChHHHHHHHhhcCC
Q 007517 69 VAQTNMVLGYCQDGRVDEGREIFDEMPKKNV-ISWTT-------MISGYVNNNRIDVARKLFEVMPE 127 (600)
Q Consensus 69 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-------li~~~~~~g~~~~A~~~~~~m~~ 127 (600)
..+|.++..|...+.++.|..+..+..-|.. .+.+- +...+.-.+++.+|.+.|.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566666777777777777777776654422 22111 23445556677777666666443
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.49 E-value=1.2e+02 Score=26.19 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=23.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCccCchhH--hhHHHHHhhhcchHHHHHHHHHHHH
Q 007517 201 VYERKGYELEVIDLFTLMQKEGVRVNFPSL--ISVLSVCASLASLDHGRQVHAQLVR 255 (600)
Q Consensus 201 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~ 255 (600)
..+..|+.+- .+.+.+.|..++.... .+.+......|+.+-++.+++.-.+
T Consensus 183 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 183 WAVLAGNTTV----ISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHTCHHH----HHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 3344555443 3333344554443221 2345555566666666655554433
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=51.47 E-value=1.8e+02 Score=28.25 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=8.4
Q ss_pred hhcCCHHHHHHHHHh
Q 007517 375 GRAGQVEDAMKLIEA 389 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~ 389 (600)
.+.|+.+-+.-+++.
T Consensus 352 ~~~g~~~iv~~Ll~~ 366 (437)
T 1n11_A 352 AQQGHTDIVTLLLKN 366 (437)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHCChHHHHHHHHHC
Confidence 456666655555543
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.10 E-value=1.3e+02 Score=26.69 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHccCCCCCcc---hHHHHHHHHHhcCChHHHHHHHhh
Q 007517 41 TVMLGGFIRDSRIDDARRLFDMMPEKDVV---AQTNMVLGYCQDGRVDEGREIFDE 93 (600)
Q Consensus 41 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~ 93 (600)
++.+...++.|+++..+.+++.-...+.. ...+.+...++.|+.+-...+++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 34455556667777666666654332211 112334444455666555555554
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=50.18 E-value=1e+02 Score=25.24 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 415 AEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 415 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
+..+|..|.. +.-..+..|...+..+...|++++|.++++.-.+++
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6677777766 344455668888888888888888888888766654
No 294
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.64 E-value=1.4e+02 Score=28.21 Aligned_cols=49 Identities=12% Similarity=-0.124 Sum_probs=20.6
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCh-hhHHHHHHHHHHcCChHHHHHHHHHH
Q 007517 169 LGLGQNGEVQKARVVFDQMREKDD-ATWSGMIKVYERKGYELEVIDLFTLM 218 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m 218 (600)
...+..|+.+-+.-+++.-...+. .-++ .+...+..|+.+-+..+++.-
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGA 107 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhc
Confidence 344445555555555544332222 1122 222233445555444444443
No 295
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=48.36 E-value=6.2 Score=23.62 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=10.6
Q ss_pred ccccc-CCCccCCCCC
Q 007517 585 RFHHF-KDGLCSCRDY 599 (600)
Q Consensus 585 ~~h~~-~~g~csc~~~ 599 (600)
.=|.. .+|.||||-|
T Consensus 14 kPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 14 LPHRLNSLGGCRCGKY 29 (42)
T ss_dssp TTSCCCTTSSBTTTTB
T ss_pred CCceecCCceeccccc
Confidence 33444 6899999976
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.94 E-value=1.2e+02 Score=25.32 Aligned_cols=17 Identities=6% Similarity=0.282 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHhc
Q 007517 171 LGQNGEVQKARVVFDQM 187 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~~ 187 (600)
.+..|+.+....++..-
T Consensus 12 A~~~g~~~~v~~ll~~~ 28 (201)
T 3hra_A 12 AANQRDTKKVKEILQDT 28 (201)
T ss_dssp HHHTTCHHHHHHHHTCT
T ss_pred HHHhccHHHHHHHHHcC
Confidence 34455555555555443
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=46.97 E-value=1.8e+02 Score=27.01 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHhHhc
Q 007517 296 WNSIISGYAQYGLGEKSLKVFHEMFSSGVMPDDVTLVGVLSACSYTGK--VKEGREIFESMKSK 357 (600)
Q Consensus 296 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~ 357 (600)
.+.++.-|...|+.++|.+.++++..-... .......+..+.-+.+. .+...+++..+.+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 445666666667777777776666311000 11233334444444322 34455556555544
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.40 E-value=1.6e+02 Score=26.18 Aligned_cols=82 Identities=13% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHHHHhCCChHHHHHHHhhCCCCCc---chHHHHHHHHHcCCCHHHHHHHHccCCCCCc---chHHHHHHHHHhcCCh
Q 007517 11 AMVRGYVEEGMITEAGTLFWQMPEKNV---VSWTVMLGGFIRDSRIDDARRLFDMMPEKDV---VAQTNMVLGYCQDGRV 84 (600)
Q Consensus 11 ~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~ 84 (600)
+.+...++.|+.+....+++.-...+. ....+.+...+..|+.+-...+++.-..++. .-. +.+...++.|+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~ 85 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGA-TPFLLAAIAGSV 85 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC-CHHHHHHHHTCH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-CHHHHHHHcCCH
Confidence 345555667777776666665443221 1122344555566777766666665432221 111 223333344555
Q ss_pred HHHHHHHhh
Q 007517 85 DEGREIFDE 93 (600)
Q Consensus 85 ~~A~~~~~~ 93 (600)
+-+..+++.
T Consensus 86 ~~v~~Ll~~ 94 (285)
T 1wdy_A 86 KLLKLFLSK 94 (285)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 554444443
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.91 E-value=1.2e+02 Score=25.10 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=35.5
Q ss_pred HHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007517 415 AEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRNV 461 (600)
Q Consensus 415 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 461 (600)
+..+|..|.. +.-..+..|...+..+...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5566777665 4455566788888889999999999999988776653
No 300
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=45.90 E-value=1.4e+02 Score=25.55 Aligned_cols=65 Identities=5% Similarity=-0.002 Sum_probs=42.5
Q ss_pred hHHHHHHHHH---HcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc-----hHHHHHHHHHHHHcCCC
Q 007517 194 TWSGMIKVYE---RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS-----LDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 194 ~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 259 (600)
..-.+|+++. +..+++.|+-++-+|...| .|....-..++.+....|. +..+...++.....|.+
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3444666664 4689999999999999999 7766655666666655543 34444455555555543
No 301
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=44.82 E-value=7.8 Score=26.49 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=17.7
Q ss_pred ceEEEecCCcccccCCCccCC
Q 007517 576 REIILRDANRFHHFKDGLCSC 596 (600)
Q Consensus 576 ~~~~~~~~~~~h~~~~g~csc 596 (600)
..|-+.|.+..|+|+||+-+-
T Consensus 8 k~v~LkDGstvyiFKDGKMam 28 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGM 28 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEE
T ss_pred eeEecCCCcEEEEEcCCceeh
Confidence 467789999999999998653
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.09 E-value=1.9e+02 Score=31.99 Aligned_cols=90 Identities=4% Similarity=-0.114 Sum_probs=56.2
Q ss_pred HHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC----------------
Q 007517 334 VLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDLLGRAGQVEDAMKLIEAM--PFEPD---------------- 395 (600)
Q Consensus 334 ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~---------------- 395 (600)
++..|...|..+.+.++..- .+.++..--.+..+|..+|++++|.+.|+++ ++.++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 56667777777766654322 2334333345677888899999999999877 22110
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCC
Q 007517 396 -------AIIWGSLLGACRTHMKLDLAEVAAKKLLQ-LEPKN 429 (600)
Q Consensus 396 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~ 429 (600)
..-|..++..+.+++-++-+..+.+.+++ ..+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 11355566666677777777777777775 34444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.08 E-value=54 Score=26.86 Aligned_cols=64 Identities=13% Similarity=0.292 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHhhhhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCH
Q 007517 265 ASVLITMYIKCGELVKGKLIFDNFASKD---IVMWNSIISGYAQYGL--GEKSLKVFHEMFSSGVMPDD 328 (600)
Q Consensus 265 ~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 328 (600)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. -+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567888888899999999999887652 3444555555555332 34567777777776654443
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.60 E-value=2.3e+02 Score=26.98 Aligned_cols=25 Identities=16% Similarity=0.400 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHhhCC
Q 007517 133 WTAMLMGYTQCGRIQDAWELFKAMP 157 (600)
Q Consensus 133 ~~~ll~~~~~~g~~~~a~~~~~~~~ 157 (600)
..+++.-|...++.+++.+.++.+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3445555556666666666666655
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.51 E-value=1.4e+02 Score=26.52 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=17.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 007517 198 MIKVYERKGYELEVIDLFTLMQK 220 (600)
Q Consensus 198 li~~~~~~g~~~~A~~~~~~m~~ 220 (600)
-+..+....++++|++++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 45677778888888888877654
No 306
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=35.21 E-value=2.1e+02 Score=24.73 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHH---HcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhcc-----hHHHHHHHHHHHHcCCC
Q 007517 191 DDATWSGMIKVYE---RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLAS-----LDHGRQVHAQLVRCQFD 259 (600)
Q Consensus 191 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 259 (600)
+-...-.+|+++. +..+++.|+-++-+|.+.|-.|....-..++.+.-..|. +..|...+......|.+
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4444455677775 468999999999999999987776666666666555443 33444444445555543
No 307
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.46 E-value=4.2e+02 Score=27.67 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=17.2
Q ss_pred hhcCCHHHHHHHHHhCCCCCC
Q 007517 375 GRAGQVEDAMKLIEAMPFEPD 395 (600)
Q Consensus 375 ~~~g~~~~A~~~~~~m~~~p~ 395 (600)
...|++++|++.++++++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 678999999999999866663
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.15 E-value=1.9e+02 Score=27.32 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=47.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHHhcccCC---hhhHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCccCchh---HhhHHHHH
Q 007517 165 NSMILGLGQNGEVQKARVVFDQMREKD---DATWSGMIKVYERKG-YELEVIDLFTLMQKEGVRVNFPS---LISVLSVC 237 (600)
Q Consensus 165 ~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~ 237 (600)
..++.-|...|++++|.+.++++..|. .+....+..+.-+.. .-+.+..++..+.+.|+-+.... |..++..+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 467778888888888888888887652 122222233332221 12345566777766654332222 22333333
Q ss_pred hhhc-chHHHHHHHHHHHH
Q 007517 238 ASLA-SLDHGRQVHAQLVR 255 (600)
Q Consensus 238 ~~~~-~~~~a~~~~~~~~~ 255 (600)
.... |...|...+..+..
T Consensus 95 ~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHG
T ss_pred hHhhcCccchHHHHHHHHH
Confidence 2222 44555555555544
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.15 E-value=37 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=22.3
Q ss_pred ChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 007517 83 RVDEGREIFDEMPKKNVISWTTMISGYVNNNRIDVA 118 (600)
Q Consensus 83 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 118 (600)
+.+.|+++++.++.+...+|..++.++...|+..-|
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 556666666666666666666666666555554444
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.96 E-value=1.6e+02 Score=26.16 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHhHhcCCCCCChHHHHHHHHH
Q 007517 300 ISGYAQYGLGEKSLKVFHEMFSS--GVMP----DDVTLVGVLSACSYTGKVKEGREIFESMKSKYLVEPKTEHYACMVDL 373 (600)
Q Consensus 300 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~li~~ 373 (600)
++.+....++++|++++++..+. ++++ +.......+..-.....-.-+..+.+.+.. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Confidence 45566677777777777665431 2221 111222222222222222333344444422 3455556666777
Q ss_pred HhhcCCHHHHHHHHHh
Q 007517 374 LGRAGQVEDAMKLIEA 389 (600)
Q Consensus 374 ~~~~g~~~~A~~~~~~ 389 (600)
+.|.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888888888887754
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.82 E-value=1.3e+02 Score=30.34 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHhcCCC--CCCh--HH-HHHHHHHHhhcCCHHHHHHHHHhC
Q 007517 330 TLVGVLSACSYTGKVKEGREIFESMKSKYLV--EPKT--EH-YACMVDLLGRAGQVEDAMKLIEAM 390 (600)
Q Consensus 330 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~--~p~~--~~-~~~li~~~~~~g~~~~A~~~~~~m 390 (600)
.++.+++.|.+.+.+++|..+..+.. +.. .++. .. +-.+...+.-.+++.+|.+.+...
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 45566666777777777777766553 110 0111 11 223445555666777776666553
No 312
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=31.45 E-value=16 Score=29.19 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=29.6
Q ss_pred CCcEEEEc----cccccccchhhHHHHhhhhCceEEEecCCcccccCCCccC
Q 007517 548 GVPIRVMK----NLRVCGDCHSAIKLISKVMGREIILRDANRFHHFKDGLCS 595 (600)
Q Consensus 548 ~~~~~~~~----~l~~c~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 595 (600)
...+||+. ..++|.+| .++..-..-.+.-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45677774 57888887 455555556799999999999874
No 313
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=31.37 E-value=2.2e+02 Score=23.83 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhcC-CHHHHHHHHHhCCCCC
Q 007517 365 EHYACMVDLLGRAG-QVEDAMKLIEAMPFEP 394 (600)
Q Consensus 365 ~~~~~li~~~~~~g-~~~~A~~~~~~m~~~p 394 (600)
....-++..+.+.| .++.+..+++.+...|
T Consensus 137 ~~~~K~~~~L~rrGF~~~~I~~vl~~l~~~~ 167 (177)
T 3e3v_A 137 NKQNKIKQSLLTKGFSYDIIDTIIQELDLIF 167 (177)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCcCCC
Confidence 34445555666666 3555555665553333
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.92 E-value=2e+02 Score=24.60 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=32.7
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhhc
Q 007517 197 GMIKVYE---RKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASLA 241 (600)
Q Consensus 197 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 241 (600)
.+|+++. +..+++.|+-.+-+|.+.|-.|....-..++.+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4566664 46899999999999999997776665555555554444
No 315
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.58 E-value=2.5e+02 Score=23.90 Aligned_cols=114 Identities=10% Similarity=0.009 Sum_probs=52.3
Q ss_pred HHHHhcCCHHHHHHHHHhccc---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHcCCccCchh---HhhHHHHHhhhcc
Q 007517 169 LGLGQNGEVQKARVVFDQMRE---KDDATWSGMIKVYERKGYELEVIDLFTLMQKEGVRVNFPS---LISVLSVCASLAS 242 (600)
Q Consensus 169 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~ 242 (600)
...+..|+.+-+..+++.-.. .+....+.+..+... +...+..++ +.+.|..++... -.+.+...+..|+
T Consensus 114 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~ 189 (240)
T 3eu9_A 114 HLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGN 189 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-CCSSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred HHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHh-CChHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence 334445555555555443222 122233334333333 332333332 344454444322 2244555566677
Q ss_pred hHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHHcCCHHHHHhhhhhcCC
Q 007517 243 LDHGRQVHAQLVRCQFDVDVYV--ASVLITMYIKCGELVKGKLIFDNFAS 290 (600)
Q Consensus 243 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~y~~~g~~~~A~~~~~~~~~ 290 (600)
.+.++.+ .+.|..++... ..+.+....+.|+.+-+.-+++....
T Consensus 190 ~~~v~~L----l~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 190 TTVISLL----LEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHH----HHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHH----HHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 6644444 44455444321 22345566777888777776665443
No 316
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.48 E-value=2.6e+02 Score=23.95 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHHcCCHHHHHHHHHHHhccCCCCCc
Q 007517 380 VEDAMKLIEAMPFEPDAI--IW-----GSLLGACRTHMKLDLAEVAAKKLLQLEPKNAG 431 (600)
Q Consensus 380 ~~~A~~~~~~m~~~p~~~--~~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 431 (600)
++.|+.+++.+.-.-|.. .- -..+..|.+.|.+++|.+++++..+..|.+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~ 152 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMP 152 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchH
Confidence 556666777663222211 11 22345688999999999999998887766533
No 317
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.79 E-value=2.8e+02 Score=23.83 Aligned_cols=55 Identities=7% Similarity=-0.016 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCC
Q 007517 206 GYELEVIDLFTLMQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLVRCQFDV 260 (600)
Q Consensus 206 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 260 (600)
+...++.++|..|...|+--... -|......+...|++.+|.+++..-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 33556777777777776644322 33444444555566666666665555554444
No 318
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.99 E-value=1.2e+02 Score=24.43 Aligned_cols=44 Identities=7% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhhh
Q 007517 197 GMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCASL 240 (600)
Q Consensus 197 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 240 (600)
.++..+...+.+-.|.++++.+.+.+...+..|....|..+...
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 69 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRES 69 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHC
Confidence 33444444444445555555555444444444444444444333
No 319
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=27.65 E-value=12 Score=19.35 Aligned_cols=13 Identities=38% Similarity=1.416 Sum_probs=8.9
Q ss_pred ccCCCcc--CCCCCC
Q 007517 588 HFKDGLC--SCRDYW 600 (600)
Q Consensus 588 ~~~~g~c--sc~~~~ 600 (600)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 6777777 566655
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.36 E-value=2.6e+02 Score=23.08 Aligned_cols=16 Identities=6% Similarity=0.534 Sum_probs=7.8
Q ss_pred HHhcCCHHHHHHHHHh
Q 007517 171 LGQNGEVQKARVVFDQ 186 (600)
Q Consensus 171 ~~~~g~~~~A~~~f~~ 186 (600)
.++.|+.+-+..+++.
T Consensus 113 A~~~~~~~~v~~Ll~~ 128 (201)
T 3hra_A 113 AAEKGHIDNVKLLLED 128 (201)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3444555555545444
No 321
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.73 E-value=2e+02 Score=26.83 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=42.0
Q ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 391 PFEPDA--IIWGSLLGACRTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 391 ~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
++.|.. .+..+-++...+++++..|..+.++++++.|+.. ..++|.+++..-.+.+
T Consensus 191 ~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 191 NLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 566653 4577778889999999999999999999988531 2356777777766553
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.59 E-value=1.7e+02 Score=23.60 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCccCchhHhhHHHHHhh
Q 007517 197 GMIKVYERKGYELEVIDLFTLMQKEGVRVNFPSLISVLSVCAS 239 (600)
Q Consensus 197 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 239 (600)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|..+..
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3444444444455555555555554444444444444444433
No 323
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.80 E-value=97 Score=22.96 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 007517 175 GEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEV 211 (600)
Q Consensus 175 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 211 (600)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3577788888888888888888888888766665554
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.39 E-value=1.5e+02 Score=24.46 Aligned_cols=57 Identities=5% Similarity=0.045 Sum_probs=26.5
Q ss_pred HcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHHcCC
Q 007517 220 KEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC--QFDVDVYVASVLITMYIKCGE 277 (600)
Q Consensus 220 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~ 277 (600)
+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.---++.+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 345554332 223344444444445555566555554 444444444444455555553
No 325
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.10 E-value=78 Score=23.17 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=21.5
Q ss_pred cCChHHHHHHHhhCCCCCcccHHHHHHHHHhCCChH
Q 007517 81 DGRVDEGREIFDEMPKKNVISWTTMISGYVNNNRID 116 (600)
Q Consensus 81 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 116 (600)
....++|.++++.++.+...++..++.++.+.+...
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 345566666666666666666666666666555443
No 326
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.04 E-value=1.4e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.311 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHhcccCChhhHHHHHHHHHHcCChHHH
Q 007517 174 NGEVQKARVVFDQMREKDDATWSGMIKVYERKGYELEV 211 (600)
Q Consensus 174 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 211 (600)
....+.|.++++.++.++...+..++.++.+.+...-|
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 45677888888888888888888888888777754433
No 327
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.61 E-value=1.1e+02 Score=23.77 Aligned_cols=43 Identities=12% Similarity=0.061 Sum_probs=29.2
Q ss_pred HHHHHHHcCCccCchhHhhHHHHHhhhcchHHHHHHHHHHHHc
Q 007517 214 LFTLMQKEGVRVNFPSLISVLSVCASLASLDHGRQVHAQLVRC 256 (600)
Q Consensus 214 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 256 (600)
+|..+....+.|+...-..-+..+...++++.|..+|..+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4555666666666554445555666778999999998887763
No 328
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.55 E-value=81 Score=24.60 Aligned_cols=19 Identities=5% Similarity=-0.209 Sum_probs=8.1
Q ss_pred CCCcchHHHHHHHHHhcCC
Q 007517 65 EKDVVAQTNMVLGYCQDGR 83 (600)
Q Consensus 65 ~~~~~~~~~li~~~~~~g~ 83 (600)
++|...-...+.++.+.|+
T Consensus 53 d~~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444444444444444443
No 329
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.14 E-value=5.1e+02 Score=26.15 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHH----HH-HHhccCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 393 EPDAIIWGSLLGACRTHMKLDLAEVA----AK-KLLQLEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 393 ~p~~~~~~~ll~~~~~~g~~~~a~~~----~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+|......|-.=+..+|..++-+.+ ++ -+.+..|++......|-.-|.+.|++-+|.+++-.+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34555544555555555554433221 11 1222345565556677777888999999999999888764
No 330
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.10 E-value=2.2e+02 Score=28.57 Aligned_cols=43 Identities=28% Similarity=0.316 Sum_probs=21.5
Q ss_pred HHcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchHH
Q 007517 407 RTHMKLDLAEVAAKKLLQLEPKNAGPYILLSNIYASQGRFHDV 449 (600)
Q Consensus 407 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 449 (600)
+.....+.|...+.++..+.|++...|..|+......|+.-+|
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a 205 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHH
Confidence 3334445555555555555555555555555555544444333
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.07 E-value=2.9e+02 Score=24.14 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHhc--cCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007517 414 LAEVAAKKLLQ--LEPKNAGPYILLSNIYASQGRFHDVAELRKNMRKRN 460 (600)
Q Consensus 414 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 460 (600)
.+..+|..|.. +.-..+..|...+..+...|++.+|.++|+.-.+++
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 45567776665 444555668888888888888888888888766554
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.25 E-value=5.2e+02 Score=23.95 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=23.9
Q ss_pred HHHHHcCCCHHHHHHHHccCCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCC
Q 007517 44 LGGFIRDSRIDDARRLFDMMPEK---DVVAQTNMVLGYCQDGRVDEGREIFDEMP 95 (600)
Q Consensus 44 l~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 95 (600)
+...+..|+.+....+++.-..+ |..-++ .+...+..|+.+-+..+++.-.
T Consensus 24 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCC
Confidence 33444556666666666543322 111122 2333344566665555555544
No 333
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.24 E-value=3.5e+02 Score=21.97 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCccCch-hHhhHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 007517 210 EVIDLFTLMQKEGVRVNFP-SLISVLSVCASLASLDHGRQVHAQLVRCQFDVD 261 (600)
Q Consensus 210 ~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 261 (600)
++.++|..|...|+--... -|......+...|++.+|.+++..-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3566666666666544332 344555555666777777777766666655554
No 334
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.18 E-value=1e+02 Score=20.52 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHcCCccCchhHhhHHHHH
Q 007517 208 ELEVIDLFTLMQKEGVRVNFPSLISVLSVC 237 (600)
Q Consensus 208 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 237 (600)
.++|.+.|.+|++..-.+...||..++..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 467888888888765455567888777776
Done!