BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007518
(600 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/534 (43%), Positives = 311/534 (58%), Gaps = 30/534 (5%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
++ALIS+ DK L L GL G I+STG TA ++ + G+ VT VEQLT FPE+LDGR
Sbjct: 11 RRALISVYDKTGLVDLAQGLSAAGVEIISTGSTAKTIADTGIPVTPVEQLTGFPEVLDGR 70
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP +H G+LA + H AL + GI F+LVVVNLYPF V S +D D +E
Sbjct: 71 VKTLHPRVHAGLLADLRKSEHAAALEQLGIEAFELVVVNLYPFSQTVESGASVD--DCVE 128
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255
IDIGGPAM+RAAAKNH VV Y +L L+ R++LA AFQH+A Y
Sbjct: 129 QIDIGGPAMVRAAAKNHPSAAVVTDPLGYHGVLAALRAGGFTLAERKRLASLAFQHIAEY 188
Query: 256 DSAVSEWLWKQIAEED---KFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312
D AV+ W+ + +A E FP F + LRYGENPHQ+AA Y D + G
Sbjct: 189 DIAVASWMQQTLAPEHPVAAFPQWFGRSWRRVAMLRYGENPHQQAALYGDPTAWP----G 244
Query: 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVA-SRDDILEAYKLA 371
+A A Q HGK+MSYNN+ DADAAW + + I+KH NPCG+A S + +A++ A
Sbjct: 245 LAQAEQLHGKDMSYNNFTDADAAWRAAFDHEQTCVAIIKHANPCGIAISSVSVADAHRKA 304
Query: 372 VKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRG 431
+ DP+SA+GG++A N EV + E+ EY S +F E++VAP Y L++L
Sbjct: 305 HECDPLSAYGGVIAANTEV----SVEMAEYVS------TIFTEVIVAPGYAPGALDVL-A 353
Query: 432 KSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDDL-----TPEDIQFKVVSEKKPQESEL 486
+ KN+R+L + G LR + GG L Q SD L P + S P + L
Sbjct: 354 RKKNIRVLVAAEPLAGGSELRPISGGLLIQQSDQLDAHGDNPANWTLATGSPADP--ATL 411
Query: 487 HDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKGAALASDA 546
D FAW + VKSNAIVIA + +G+G GQ NR ++ R+A+++ G+ V+GA ASDA
Sbjct: 412 TDLVFAWRACRAVKSNAIVIAADGATVGVGMGQVNRVDAARLAVERGGERVRGAVAASDA 471
Query: 547 FFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600
FFPF D +E G+ + PGGS+RD + + K GV L LT RHF H
Sbjct: 472 FFPF--PDGLETLAAAGVTAVVHPGGSVRDEEVTEAAAKAGVTLYLTGARHFAH 523
>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
Phosphoribosylaminoimidazolecarboxamide
FormyltransferaseIMP Cyclohydrolase
Length = 534
Score = 358 bits (919), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 206/533 (38%), Positives = 311/533 (58%), Gaps = 33/533 (6%)
Query: 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRV 136
+AL+S+SDK+ + G L+ LG+ I+STGGT L+ G+ V +V T PE+ +GRV
Sbjct: 26 RALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPELFEGRV 85
Query: 137 KTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN 196
KTLHP IHGGIL +R ++H+ E+ I DLV VNLYPF K T+ DF++ IEN
Sbjct: 86 KTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYPF--KKTTIXSDDFDEIIEN 143
Query: 197 IDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYD 256
IDIGGPA IR+AAKN+KDV V+ DY ++E LK Q+D+ FR L KA++H A+YD
Sbjct: 144 IDIGGPAXIRSAAKNYKDVXVLCDPLDYEKVIETLKKGQNDENFRLNLXIKAYEHTANYD 203
Query: 257 SAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGGIATA 316
+ ++ + ++ F S + + +YGENPHQK A Y + N +
Sbjct: 204 AYIANYXNERF--NGGFGASKFIVGQKVFDTKYGENPHQKGALYEFDAFFSANFKALKG- 260
Query: 317 IQHHGKEMSYNNYLDADAAWNCVSEF-KNPTCVIVKHTNPCGVASRDDILEAYKLAVKAD 375
E S+NN D +AA N S F K P IVKH NPCG A +++++++Y A+K D
Sbjct: 261 ------EASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIKENLVQSYIHALKCD 314
Query: 376 PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKN 435
VSA+GG+VA N +DEALA ++ E ++ E+++A + E+ L + GK K
Sbjct: 315 SVSAYGGVVAINGTLDEALANKINE----------IYVEVIIAANVDEKALAVFEGK-KR 363
Query: 436 LRILETKK----NKKGKLSLRQVGGGWLAQDSDDLTPEDIQ-FKVVSEKKPQESELHDAE 490
++I + K + + GG++ Q+SD++ ++++ K+ S+++ + EL D E
Sbjct: 364 IKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLXSQREASKEELKDLE 423
Query: 491 FAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRE---SLRIAMKKAGDEVKGAALASDAF 547
A KSN +V KN + +G G +R + + K+ G +++G LAS+AF
Sbjct: 424 IAXKIAAFTKSNNVVYVKNGAXVAIGXGXTSRIDAAKAAIAKAKEXGLDLQGCVLASEAF 483
Query: 548 FPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600
FPF +D+++EA + G+ I EPGGSIRD + + ++YG AL T VRHF H
Sbjct: 484 FPF--RDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGXALYFTGVRHFLH 534
>pdb|1ZCZ|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
pdb|1ZCZ|B Chain B, Crystal Structure Of
Phosphoribosylaminoimidazolecarboxamide
Formyltransferase IMP CYCLOHYDROLASE (TM1249) FROM
THERMOTOGA Maritima At 1.88 A Resolution
Length = 464
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 186/526 (35%), Positives = 268/526 (50%), Gaps = 76/526 (14%)
Query: 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGR 135
K+ L+SL +K+ + L E G+ I ++ GTA L++ G+ V +T F +L G
Sbjct: 14 KRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGL 73
Query: 136 VKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE 195
VKTLHP I GIL + +D+V V+LYP D
Sbjct: 74 VKTLHPEIFAGILGPEPR--------------WDVVFVDLYPPPD--------------- 104
Query: 196 NIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASY 255
IDIGG A++RAAAKN K V E +E DD++ R+ LA F + Y
Sbjct: 105 -IDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEI-----DDEETRKYLAGMTFAFTSVY 158
Query: 256 DSAVSEWLWKQIAEEDKFPPSFTVPLELKS-SLRYGENPHQKAAFYVDKSLAEVNAGGIA 314
DS + ++F ++ + + LRYGENPH+KA Y G A
Sbjct: 159 DSIRA----------NQFVEGISLAFKREDLQLRYGENPHEKAFVY----------GKPA 198
Query: 315 TAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKA 374
I H GK +S+NN LDA+ AW V+VKH +PCG A +D +E K A++A
Sbjct: 199 FEILHEGKTISFNNILDAENAWFMAKNLPRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEA 258
Query: 375 DPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSK 434
D S+FGGI+A N E+DE +AK L++Y E++VAPS+T+E +E+L K
Sbjct: 259 DDESSFGGILAVNFEMDEEVAKSLKKY-----------LEVIVAPSFTQEAIEVLSKKKV 307
Query: 435 NLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWL 494
L + GK++ G L S+ PE F++V + E EL D EFA+
Sbjct: 308 RLLKPGDYASWAGKMAF-----GSLVL-SERKYPEG-NFELVVGEPLSEKELEDLEFAYR 360
Query: 495 CVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKGAALASDAFFPFAWKD 554
V+ KSNA++IAK+ +G+GSGQP+R+ + IA AG++ KGA ASDAFFPF D
Sbjct: 361 VVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAKGAVAASDAFFPFP--D 418
Query: 555 AVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600
++E + G+ + P GSIRD + I+ + G+ R F+H
Sbjct: 419 SLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH 464
>pdb|1PKX|A Chain A, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|B Chain B, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|C Chain C, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1PKX|D Chain D, Crystal Structure Of Human Atic In Complex With Xmp
pdb|1P4R|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1P4R|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor Bw1540u88ud
pdb|1PL0|A Chain A, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|B Chain B, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|C Chain C, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
pdb|1PL0|D Chain D, Crystal Structure Of Human Atic In Complex With Folate-
Based Inhibitor, Bw2315u89uc
Length = 592
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 172/489 (35%), Positives = 239/489 (48%), Gaps = 66/489 (13%)
Query: 78 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK 137
AL S+SDK L L LG +V++GGTA +L +AG++V V +LT FPEML GRVK
Sbjct: 7 ALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGRVK 66
Query: 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI 197
TLHP +H GILAR + + D ++ +V NLYPF V S G+ E+ +E I
Sbjct: 67 TLHPAVHAGILARNIPEDNAD-MARLDFNLIRVVACNLYPFVKTVASP-GVTVEEAVEQI 124
Query: 198 DIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQ---QFRRKLAWKAFQHVAS 254
DIGG ++RAAAKNH V VV EDY + ++ ++ + RR+LA KAF H A
Sbjct: 125 DIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSESKDTSLETRRQLALKAFTHTAQ 184
Query: 255 YDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAA--FYVDKSLAEVNAGG 312
YD A+S++ KQ ++ P LRYG NPHQ A + + L G
Sbjct: 185 YDEAISDYFRKQYSKGVSQMP-----------LRYGMNPHQTPAQLYTLQPKLPITVLNG 233
Query: 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVA-----SRDD 363
I N DA AW V E K P KH +P G A S D+
Sbjct: 234 APGFI----------NLCDALNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDE 283
Query: 364 ---------------ILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGE 408
I AY A AD +S+FG VA + D AK + R +DG
Sbjct: 284 AKVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSDVCDVPTAKIIS--REVSDG- 340
Query: 409 TRMFYEIVVAPSYTEEGLEIL-RGKSKNLRILETKKN-KKGKLSLRQVGGGWLAQDSDDL 466
++AP Y EE L IL + K+ N +L+ ++ K + +R + G L+Q ++
Sbjct: 341 -------IIAPGYEEEALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNG 393
Query: 467 TPEDIQFK--VVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRE 524
+ F V K ES L D A + VK+ +SN++ AKN ++G+G+GQ +R
Sbjct: 394 VVDKSLFSNVVTKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIH 453
Query: 525 SLRIAMKKA 533
R+A KA
Sbjct: 454 CTRLAGDKA 462
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 541 ALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600
+++SDAFFPF +D V+ A +G+ IA P GS D I+ C++ G+ L T++R F H
Sbjct: 535 SISSDAFFPF--RDNVDRAKRSGVAYIAAPSGSAADKVVIEACDELGIILAHTNLRLFHH 592
>pdb|1THZ|A Chain A, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|1THZ|B Chain B, Crystal Structure Of Avian Aicar Transformylase In Complex
With A Novel Inhibitor Identified By Virtual Ligand
Screening
pdb|2B1G|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|C Chain C, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1G|D Chain D, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2B1I|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU0|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|A Chain A, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
pdb|2IU3|B Chain B, Crystal Structures Of Transition State Analogue Inhibitors
Of Inosine Monophosphate Cyclohydrolase
Length = 593
Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 167/491 (34%), Positives = 240/491 (48%), Gaps = 70/491 (14%)
Query: 78 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK 137
AL+S+S+K L L LG ++++GGTAT+L +AG+ V V LT FPEML GRVK
Sbjct: 8 ALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVK 67
Query: 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI 197
TLHP +H GILAR + + D +++ +VV NLYPF K S+ G+ + +E I
Sbjct: 68 TLHPAVHAGILARNIPEDNAD-MNKQDFSLVRVVVCNLYPFV-KTVSSPGVTVPEAVEKI 125
Query: 198 DIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQ---QFRRKLAWKAFQHVAS 254
DIGG A++RAAAKNH V VV DY ++ + + ++D + RR LA KAF H A
Sbjct: 126 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 185
Query: 255 YDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAA-FYVDK---SLAEVNA 310
YD+A+S++ K+ ++ P LRYG NPHQ A Y + L VN
Sbjct: 186 YDAAISDYFRKEYSKGVSQLP-----------LRYGMNPHQSPAQLYTTRPKLPLTVVNG 234
Query: 311 GGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVA------- 359
+ N DA AW V E K P KH +P G A
Sbjct: 235 SP------------GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSE 282
Query: 360 -------------SRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTD 406
+ + AY + AD +S+FG +A + D AK + R +D
Sbjct: 283 EEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIIS--REVSD 340
Query: 407 GETRMFYEIVVAPSYTEEGLEIL-RGKSKNLRILETKKN-KKGKLSLRQVGGGWLAQDSD 464
G VVAP Y EE L+IL + K+ +L+ N + +R + G L Q +
Sbjct: 341 G--------VVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRN 392
Query: 465 DLTPEDIQFK--VVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNR 522
+ + FK V K ES + D A + VK+ +SN++ AK+ ++G+G+GQ +R
Sbjct: 393 NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSR 452
Query: 523 RESLRIAMKKA 533
R+A KA
Sbjct: 453 IHCTRLAGDKA 463
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 536 EVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595
++ +L+SDAFFPF +D V+ A G+ I P GS D I+ CN+ G+ L+ T++
Sbjct: 531 KLTAVSLSSDAFFPF--RDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNL 588
Query: 596 RHFKH 600
R F H
Sbjct: 589 RLFHH 593
>pdb|1M9N|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1M9N|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With Aicar And Xmp At 1.93 Angstroms.
pdb|1OZ0|A Chain A, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor
Beta-dadf.
pdb|1OZ0|B Chain B, Crystal Structure Of The Homodimeric Bifunctional
Transformylase And Cyclohydrolase Enzyme Avian Atic In
Complex With A Multisubstrate Adduct Inhibitor Beta-dadf
Length = 613
Score = 222 bits (565), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 167/491 (34%), Positives = 240/491 (48%), Gaps = 70/491 (14%)
Query: 78 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK 137
AL+S+S+K L L LG ++++GGTAT+L +AG+ V V LT FPEML GRVK
Sbjct: 28 ALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEMLGGRVK 87
Query: 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI 197
TLHP +H GILAR + + D +++ +VV NLYPF K S+ G+ + +E I
Sbjct: 88 TLHPAVHAGILARNIPEDNAD-MNKQDFSLVRVVVCNLYPFV-KTVSSPGVTVPEAVEKI 145
Query: 198 DIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQ---QFRRKLAWKAFQHVAS 254
DIGG A++RAAAKNH V VV DY ++ + + ++D + RR LA KAF H A
Sbjct: 146 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEMAASKDKDTSVETRRHLALKAFTHTAQ 205
Query: 255 YDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAA-FYVDK---SLAEVNA 310
YD+A+S++ K+ ++ P LRYG NPHQ A Y + L VN
Sbjct: 206 YDAAISDYFRKEYSKGVSQLP-----------LRYGMNPHQSPAQLYTTRPKLPLTVVNG 254
Query: 311 GGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVA------- 359
+ N DA AW V E K P KH +P G A
Sbjct: 255 SP------------GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSE 302
Query: 360 -------------SRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTD 406
+ + AY + AD +S+FG +A + D AK + R +D
Sbjct: 303 EEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFIALSDICDVPTAKIIS--REVSD 360
Query: 407 GETRMFYEIVVAPSYTEEGLEIL-RGKSKNLRILETKKN-KKGKLSLRQVGGGWLAQDSD 464
G VVAP Y EE L+IL + K+ +L+ N + +R + G L Q +
Sbjct: 361 G--------VVAPGYEEEALKILSKKKNGGYCVLQMDPNYEPDDNEIRTLYGLQLMQKRN 412
Query: 465 DLTPEDIQFK--VVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNR 522
+ + FK V K ES + D A + VK+ +SN++ AK+ ++G+G+GQ +R
Sbjct: 413 NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSR 472
Query: 523 RESLRIAMKKA 533
R+A KA
Sbjct: 473 IHCTRLAGDKA 483
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 536 EVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595
++ +L+SDAFFPF +D V+ A G+ I P GS D I+ CN+ G+ L+ T++
Sbjct: 551 KLTAVSLSSDAFFPF--RDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNL 608
Query: 596 RHFKH 600
R F H
Sbjct: 609 RLFHH 613
>pdb|1G8M|A Chain A, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
pdb|1G8M|B Chain B, Crystal Structure Of Avian Atic, A Bifunctional
Transformylase And Cyclohydrolase Enzyme In Purine
Biosynthesis At 1.75 Ang. Resolution
Length = 593
Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 166/491 (33%), Positives = 236/491 (48%), Gaps = 70/491 (14%)
Query: 78 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK 137
AL+S+S+K L L LG ++++GGTAT+L +AG+ V V LT FPE L GRVK
Sbjct: 8 ALLSVSEKAGLVEFARSLNALGLGLIASGGTATALRDAGLPVRDVSDLTGFPEXLGGRVK 67
Query: 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI 197
TLHP +H GILAR + + D ++ +VV NLYPF K S+ G+ + +E I
Sbjct: 68 TLHPAVHAGILARNIPEDNADX-NKQDFSLVRVVVCNLYPFV-KTVSSPGVTVPEAVEKI 125
Query: 198 DIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQ---QFRRKLAWKAFQHVAS 254
DIGG A++RAAAKNH V VV DY ++ + ++D + RR LA KAF H A
Sbjct: 126 DIGGVALLRAAAKNHARVTVVCDPADYSSVAKEXAASKDKDTSVETRRHLALKAFTHTAQ 185
Query: 255 YDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAA-FYVDK---SLAEVNA 310
YD+A+S++ K+ ++ P LRYG NPHQ A Y + L VN
Sbjct: 186 YDAAISDYFRKEYSKGVSQLP-----------LRYGXNPHQSPAQLYTTRPKLPLTVVNG 234
Query: 311 GGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVA------- 359
+ N DA AW V E K P KH +P G A
Sbjct: 235 SP------------GFINLCDALNAWQLVKELKQALGIPAAASFKHVSPAGAAVGIPLSE 282
Query: 360 -------------SRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTD 406
+ + AY + AD S+FG +A + D AK + R +D
Sbjct: 283 EEAQVCXVHDLHKTLTPLASAYARSRGADRXSSFGDFIALSDICDVPTAKIIS--REVSD 340
Query: 407 GETRMFYEIVVAPSYTEEGLEIL-RGKSKNLRILETKKN-KKGKLSLRQVGGGWLAQDSD 464
G VVAP Y EE L+IL + K+ +L+ N + +R + G L Q +
Sbjct: 341 G--------VVAPGYEEEALKILSKKKNGGYCVLQXDPNYEPDDNEIRTLYGLQLXQKRN 392
Query: 465 DLTPEDIQFK--VVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNR 522
+ + FK V K ES + D A + VK+ +SN++ AK+ ++G+G+GQ +R
Sbjct: 393 NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYAKDGQVIGIGAGQQSR 452
Query: 523 RESLRIAMKKA 533
R+A KA
Sbjct: 453 IHCTRLAGDKA 463
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 536 EVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595
++ +L+SDAFFPF +D V+ A G+ I P GS D I+ CN+ G+ L+ T++
Sbjct: 531 KLTAVSLSSDAFFPF--RDNVDRAKRIGVQFIVAPSGSAADEVVIEACNELGITLIHTNL 588
Query: 596 RHFKH 600
R F H
Sbjct: 589 RLFHH 593
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI R ++ N I +TKK K
Sbjct: 57 LEITREETLNPIIQDTKKGK 76
>pdb|2HCN|A Chain A, Crystal Structure Of Rna Dependent Rna Polymerase Domain
From West Nile Virus
pdb|2HCS|A Chain A, Crystal Structure Of Rna Dependant Rna Polymerase Domain
Of West Nile Virus
Length = 595
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 50/206 (24%)
Query: 92 GIGLQELGYTI----VSTGGTATSLENAG----VSVTKVEQLTCFPEMLDGR-------- 135
G+GLQ+LGY + GG + + AG ++ +E E+LDG
Sbjct: 201 GLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAI 260
Query: 136 ---------VKTLHPNIHG----GILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKV 182
VK + P G +++R DQ+ ++ + + TF + V L ++
Sbjct: 261 IELTYRHKVVKVMRPAADGRTVMDVISREDQRGSGQVVT-YALNTFTNLAVQLV----RM 315
Query: 183 TSAGGIDFEDGIENIDIG-GPAMIRAAAKNHKDVL--VVVGSED---------YPALLEF 230
G+ D +E + G GP + ++N ++ L + V +D + L F
Sbjct: 316 MEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDDRFATSLHF 375
Query: 231 L----KGNQDDQQFRRKLAWKAFQHV 252
L K +D Q+++ W +Q V
Sbjct: 376 LNAMSKVRKDIQEWKPSTGWYDWQQV 401
>pdb|2HFZ|A Chain A, Crystal Structure Of Rna Dependent Rna Polymerase Domain
From West Nile Virus
Length = 639
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 50/206 (24%)
Query: 92 GIGLQELGYTI----VSTGGTATSLENAG----VSVTKVEQLTCFPEMLDGR-------- 135
G+GLQ+LGY + GG + + AG ++ +E E+LDG
Sbjct: 245 GLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAI 304
Query: 136 ---------VKTLHPNIHG----GILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKV 182
VK + P G +++R DQ+ ++ + + TF + V L ++
Sbjct: 305 IELTYRHKVVKVMRPAADGRTVMDVISREDQRGSGQVVT-YALNTFTNLAVQLV----RM 359
Query: 183 TSAGGIDFEDGIENIDIG-GPAMIRAAAKNHKDVL--VVVGSED---------YPALLEF 230
G+ D +E + G GP + ++N ++ L + V +D + L F
Sbjct: 360 MEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDDRFATSLHF 419
Query: 231 L----KGNQDDQQFRRKLAWKAFQHV 252
L K +D Q+++ W +Q V
Sbjct: 420 LNAMSKVRKDIQEWKPSTGWYDWQQV 445
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 218 VVGSEDYPALLEFLKGNQDDQQFRRKLAWK-----AFQHVASYDSAVSEWLWKQIAEEDK 272
VVG D P + + Q +RR +AWK F D ++ W W+ +
Sbjct: 202 VVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGERQLT 261
Query: 273 FPPSFTVPLELKSS----LRYGENP 293
P VPL ++ L Y E P
Sbjct: 262 GLPVPNVPLANAATALAVLHYSELP 286
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 16 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 57
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 58 LEITKEETLNPIIQDTKKGK 77
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 16 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 57
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 58 LEITKEETLNPIIQDTKKGK 77
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVEIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 368 YKLAVKAD--PVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEG 425
YK+ ++ D PVSAF I + D E +F +V P +T
Sbjct: 15 YKVYIEKDGKPVSAFHDIPLY------------------ADKENNIFNMVVDIPRWTNAK 56
Query: 426 LEILRGKSKNLRILETKKNK 445
LEI + ++ N I +TKK K
Sbjct: 57 LEITKEETLNPIIQDTKKGK 76
>pdb|1A4S|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1A4S|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|A Chain A, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|B Chain B, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|C Chain C, Betaine Aldehyde Dehydrogenase From Cod Liver
pdb|1BPW|D Chain D, Betaine Aldehyde Dehydrogenase From Cod Liver
Length = 503
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 472 QFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMK 531
+ +V++ K +D + AW C+++ A ++ + L G+ RRE L +
Sbjct: 102 KLEVINNGKTITEAEYDIDAAWQCIEYYAGLAPTLSGQHIQLPGGAFAYTRREPLGVC-- 159
Query: 532 KAGDEVKGAALASDAFFPFAWKDAVEEACENGI 564
G + F AWK A AC N +
Sbjct: 160 ------AGILAWNYPFMIAAWKCAPALACGNAV 186
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 356 CGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELR 399
G SR D++ A +A++ D V +G I+AFNV+V + A+EL+
Sbjct: 382 IGDVSRRDVVNA-GIALQEDRV--YGAIIAFNVKVIPSAAQELK 422
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 356 CGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELR 399
G SR D++ A +A++ D V +G I+AFNV+V + A+EL+
Sbjct: 382 IGDVSRRDVVNA-GIALQEDRV--YGAIIAFNVKVIPSAAQELK 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,840,355
Number of Sequences: 62578
Number of extensions: 747600
Number of successful extensions: 1700
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 33
length of query: 600
length of database: 14,973,337
effective HSP length: 104
effective length of query: 496
effective length of database: 8,465,225
effective search space: 4198751600
effective search space used: 4198751600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)