Query 007518
Match_columns 600
No_of_seqs 244 out of 1359
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 11:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02891 IMP cyclohydrolase 100.0 6E-224 1E-228 1775.3 56.4 546 53-600 1-547 (547)
2 TIGR00355 purH phosphoribosyla 100.0 6E-215 1E-219 1704.1 54.8 505 76-600 1-511 (511)
3 COG0138 PurH AICAR transformyl 100.0 4E-212 8E-217 1664.0 49.4 507 74-600 1-515 (515)
4 PRK00881 purH bifunctional pho 100.0 1E-203 3E-208 1622.2 55.6 507 74-600 3-513 (513)
5 KOG2555 AICAR transformylase/I 100.0 5E-155 1E-159 1205.6 36.7 492 74-600 3-588 (588)
6 PF01808 AICARFT_IMPCHas: AICA 100.0 4E-125 9E-130 967.8 29.1 311 208-533 1-315 (315)
7 smart00798 AICARFT_IMPCHas AIC 100.0 2E-124 5E-129 960.3 31.9 309 208-533 1-311 (311)
8 PRK07106 5-aminoimidazole-4-ca 100.0 4E-123 8E-128 966.6 32.9 295 284-600 3-390 (390)
9 cd01421 IMPCH Inosine monophos 100.0 3.9E-83 8.4E-88 616.6 18.7 186 76-263 1-187 (187)
10 PF02142 MGS: MGS-like domain 99.7 3.1E-17 6.8E-22 141.7 4.7 95 87-203 1-95 (95)
11 smart00851 MGS MGS-like domain 99.5 3.8E-14 8.2E-19 121.1 6.4 90 87-203 1-90 (90)
12 cd00532 MGS-like MGS-like doma 99.5 1.2E-13 2.5E-18 123.0 8.6 107 78-225 2-110 (112)
13 cd01423 MGS_CPS_I_III Methylgl 99.0 9.5E-10 2.1E-14 98.0 8.9 52 77-128 2-55 (116)
14 cd01424 MGS_CPS_II Methylglyox 98.9 3E-09 6.4E-14 93.9 5.4 51 76-126 1-53 (110)
15 PRK05234 mgsA methylglyoxal sy 98.8 1.6E-08 3.4E-13 95.0 7.7 117 74-232 3-124 (142)
16 PRK05294 carB carbamoyl phosph 98.6 8.5E-08 1.9E-12 113.7 9.9 113 75-233 937-1051(1066)
17 PLN02735 carbamoyl-phosphate s 98.5 2.3E-07 4.9E-12 110.7 9.1 53 74-126 971-1025(1102)
18 cd01422 MGS Methylglyoxal synt 98.4 2.9E-07 6.4E-12 83.2 4.0 47 78-125 3-53 (115)
19 TIGR01369 CPSaseII_lrg carbamo 98.2 2.9E-06 6.3E-11 100.9 9.8 111 74-229 936-1048(1050)
20 PRK12815 carB carbamoyl phosph 98.2 1.3E-06 2.7E-11 104.1 5.8 113 74-232 936-1050(1068)
21 PF06230 DUF1009: Protein of u 97.8 0.00015 3.3E-09 72.9 10.5 113 474-591 84-213 (214)
22 PF06506 PrpR_N: Propionate ca 91.8 0.19 4.2E-06 48.2 4.1 133 82-232 16-161 (176)
23 PF07085 DRTGG: DRTGG domain; 90.3 0.2 4.3E-06 44.1 2.4 45 554-598 52-96 (105)
24 COG3494 Uncharacterized protei 89.7 3.1 6.6E-05 43.8 10.7 117 474-591 141-274 (279)
25 KOG0370 Multifunctional pyrimi 89.5 0.33 7.1E-06 58.2 3.9 40 76-115 1298-1338(1435)
26 TIGR02571 ComEB ComE operon pr 82.8 9.3 0.0002 36.8 9.3 91 500-594 26-139 (151)
27 TIGR01182 eda Entner-Doudoroff 82.8 1.5 3.3E-05 44.1 4.2 35 554-591 71-105 (204)
28 COG0117 RibD Pyrimidine deamin 79.2 14 0.00031 35.9 9.1 76 488-568 13-100 (146)
29 PF01081 Aldolase: KDPG and KH 78.1 2.2 4.8E-05 42.7 3.5 35 554-591 71-105 (196)
30 PRK06015 keto-hydroxyglutarate 77.3 2.9 6.4E-05 42.1 4.2 35 554-591 67-101 (201)
31 PRK14869 putative manganese-de 76.6 12 0.00025 42.1 9.1 43 554-596 192-234 (546)
32 PRK07523 gluconate 5-dehydroge 76.6 12 0.00025 36.7 8.0 127 76-222 11-148 (255)
33 PRK06552 keto-hydroxyglutarate 75.9 3.4 7.4E-05 41.7 4.2 35 554-591 79-113 (213)
34 PF11009 DUF2847: Protein of u 74.7 1 2.2E-05 41.3 0.1 67 337-405 12-81 (105)
35 PF13380 CoA_binding_2: CoA bi 74.7 3.8 8.2E-05 37.2 3.8 38 552-591 68-106 (116)
36 COG1936 Predicted nucleotide k 74.6 3.9 8.5E-05 40.8 4.1 121 78-218 3-136 (180)
37 PRK07114 keto-hydroxyglutarate 73.3 4.3 9.3E-05 41.5 4.2 35 554-591 82-116 (222)
38 PLN02384 ribose-5-phosphate is 70.8 10 0.00023 39.9 6.4 62 488-565 36-99 (264)
39 PHA02588 cd deoxycytidylate de 69.8 29 0.00063 33.9 8.9 84 505-591 27-151 (168)
40 TIGR02329 propionate_PrpR prop 67.4 22 0.00047 40.6 8.5 139 80-232 34-180 (526)
41 PF07905 PucR: Purine cataboli 65.6 7.4 0.00016 35.5 3.7 42 554-595 63-107 (123)
42 PRK08264 short chain dehydroge 65.0 47 0.001 31.9 9.3 121 76-223 7-136 (238)
43 PF07799 DUF1643: Protein of u 64.6 10 0.00022 35.0 4.4 69 138-212 19-87 (136)
44 PRK07102 short chain dehydroge 64.6 28 0.0006 33.8 7.6 127 76-221 2-136 (243)
45 cd01987 USP_OKCHK USP domain i 63.7 10 0.00023 33.0 4.1 41 556-597 55-95 (124)
46 PRK05718 keto-hydroxyglutarate 63.3 9.1 0.0002 38.7 4.1 35 554-591 78-112 (212)
47 COG0120 RpiA Ribose 5-phosphat 62.7 18 0.0004 37.4 6.2 69 489-578 8-76 (227)
48 PF08149 BING4CT: BING4CT (NUC 61.1 2.4 5.2E-05 37.4 -0.4 36 537-574 7-42 (80)
49 PRK07097 gluconate 5-dehydroge 60.4 29 0.00063 34.3 7.1 126 76-221 11-147 (265)
50 PF13528 Glyco_trans_1_3: Glyc 59.8 9.2 0.0002 38.7 3.5 96 76-178 1-105 (318)
51 PF01808 AICARFT_IMPCHas: AICA 58.3 47 0.001 36.0 8.5 112 471-593 104-221 (315)
52 COG0800 Eda 2-keto-3-deoxy-6-p 57.3 12 0.00025 38.4 3.7 35 554-591 76-110 (211)
53 cd00530 PTE Phosphotriesterase 55.5 17 0.00037 36.9 4.6 40 554-593 36-78 (293)
54 PRK06101 short chain dehydroge 55.1 1.2E+02 0.0026 29.6 10.2 39 76-114 2-40 (240)
55 cd01286 deoxycytidylate_deamin 54.8 35 0.00075 31.8 6.1 80 489-571 5-117 (131)
56 PLN02807 diaminohydroxyphospho 53.8 70 0.0015 35.2 9.2 104 480-590 28-151 (380)
57 PRK08267 short chain dehydroge 53.8 51 0.0011 32.3 7.5 39 76-114 2-40 (260)
58 COG2355 Zn-dependent dipeptida 53.7 74 0.0016 34.5 9.1 129 86-247 145-301 (313)
59 PRK09186 flagellin modificatio 53.4 1.4E+02 0.0031 28.9 10.4 38 76-113 5-42 (256)
60 PRK08862 short chain dehydroge 53.3 30 0.00064 34.2 5.8 39 76-114 6-44 (227)
61 PRK04017 hypothetical protein; 52.0 68 0.0015 30.8 7.6 66 155-244 32-104 (132)
62 PRK07806 short chain dehydroge 51.9 1.7E+02 0.0037 28.3 10.7 32 76-107 7-38 (248)
63 PRK00724 formate dehydrogenase 51.6 46 0.00099 34.7 7.0 113 479-598 132-255 (263)
64 PRK08220 2,3-dihydroxybenzoate 50.9 67 0.0015 31.1 7.7 33 76-108 9-41 (252)
65 PF00809 Pterin_bind: Pterin b 50.5 33 0.00072 34.2 5.6 56 537-596 70-125 (210)
66 PRK12743 oxidoreductase; Provi 50.4 44 0.00094 32.9 6.4 30 76-105 3-32 (256)
67 PRK06500 short chain dehydroge 50.3 61 0.0013 31.2 7.3 38 76-113 7-44 (249)
68 cd06347 PBP1_ABC_ligand_bindin 50.1 23 0.0005 35.5 4.5 73 522-594 19-98 (334)
69 PF02634 FdhD-NarQ: FdhD/NarQ 48.8 39 0.00084 34.5 5.9 89 503-597 133-225 (236)
70 PRK06179 short chain dehydroge 48.8 84 0.0018 31.0 8.1 119 76-222 5-134 (270)
71 PRK07060 short chain dehydroge 48.8 1.6E+02 0.0036 28.2 10.0 38 76-113 10-47 (245)
72 TIGR02717 AcCoA-syn-alpha acet 48.5 1.4E+02 0.003 33.3 10.5 157 79-255 271-446 (447)
73 TIGR01686 FkbH FkbH-like domai 48.1 45 0.00098 35.0 6.4 39 206-244 116-158 (320)
74 PRK07454 short chain dehydroge 47.9 69 0.0015 30.9 7.3 40 74-113 5-44 (241)
75 PRK05693 short chain dehydroge 47.8 1.1E+02 0.0024 30.3 8.9 38 76-113 2-39 (274)
76 TIGR00661 MJ1255 conserved hyp 47.7 29 0.00064 35.9 5.0 41 77-118 1-48 (321)
77 TIGR03206 benzo_BadH 2-hydroxy 47.7 63 0.0014 31.2 7.0 37 76-112 4-40 (250)
78 PRK13978 ribose-5-phosphate is 47.6 35 0.00075 35.3 5.4 60 490-565 10-70 (228)
79 PRK06128 oxidoreductase; Provi 47.1 1.9E+02 0.0042 29.4 10.7 30 76-105 56-85 (300)
80 PRK05867 short chain dehydroge 46.9 66 0.0014 31.5 7.1 39 76-114 10-48 (253)
81 PRK06181 short chain dehydroge 46.8 83 0.0018 30.8 7.7 129 76-224 2-141 (263)
82 PRK08303 short chain dehydroge 46.5 1.8E+02 0.0039 30.2 10.5 32 76-107 9-40 (305)
83 PRK12481 2-deoxy-D-gluconate 3 46.3 1.2E+02 0.0026 30.0 8.7 31 76-106 9-39 (251)
84 TIGR00160 MGSA methylglyoxal s 46.0 23 0.00049 34.4 3.5 113 77-231 5-121 (143)
85 COG0300 DltE Short-chain dehyd 45.7 49 0.0011 34.9 6.2 103 74-205 5-120 (265)
86 PF08973 TM1506: Domain of unk 44.9 55 0.0012 31.4 5.9 90 333-438 2-91 (134)
87 cd01989 STK_N The N-terminal d 44.7 29 0.00063 31.0 3.9 33 564-597 81-113 (146)
88 PRK05650 short chain dehydroge 44.4 1.6E+02 0.0034 29.2 9.3 37 77-113 2-38 (270)
89 TIGR02717 AcCoA-syn-alpha acet 44.4 18 0.0004 40.0 3.0 39 554-592 79-126 (447)
90 PRK13394 3-hydroxybutyrate deh 44.3 67 0.0014 31.2 6.6 37 76-112 8-44 (262)
91 PRK08085 gluconate 5-dehydroge 44.0 89 0.0019 30.5 7.4 39 76-114 10-48 (254)
92 COG2240 PdxK Pyridoxal/pyridox 43.6 32 0.00068 36.7 4.4 81 313-401 144-227 (281)
93 PRK05866 short chain dehydroge 42.9 63 0.0014 33.1 6.4 39 76-114 41-79 (293)
94 PF03033 Glyco_transf_28: Glyc 42.2 51 0.0011 29.2 5.0 41 84-124 11-53 (139)
95 PRK07666 fabG 3-ketoacyl-(acyl 41.6 1.1E+02 0.0025 29.4 7.7 38 76-113 8-45 (239)
96 cd02169 Citrate_lyase_ligase C 40.8 3.6E+02 0.0079 28.8 11.8 113 93-250 52-170 (297)
97 cd06578 HemD Uroporphyrinogen- 40.7 1.1E+02 0.0025 29.2 7.5 125 83-232 56-193 (239)
98 PRK04247 hypothetical protein; 40.2 33 0.00072 35.8 3.9 28 414-443 208-235 (238)
99 TIGR03590 PseG pseudaminic aci 39.4 92 0.002 32.1 7.0 69 88-180 20-93 (279)
100 PRK08277 D-mannonate oxidoredu 38.7 87 0.0019 31.1 6.5 38 76-113 11-48 (278)
101 PRK06842 fumarate hydratase; P 38.6 48 0.001 33.4 4.6 35 558-594 90-125 (185)
102 smart00798 AICARFT_IMPCHas AIC 37.7 42 0.00091 36.3 4.3 109 472-591 103-216 (311)
103 PRK12744 short chain dehydroge 37.5 4E+02 0.0087 26.1 10.9 30 76-105 9-38 (257)
104 PRK12429 3-hydroxybutyrate deh 37.4 2.1E+02 0.0046 27.6 8.9 38 76-113 5-42 (258)
105 PRK11009 aphA acid phosphatase 37.3 77 0.0017 32.7 6.0 84 85-170 116-210 (237)
106 PRK09291 short chain dehydroge 37.3 1.5E+02 0.0034 28.7 7.9 35 76-110 3-37 (257)
107 PRK05928 hemD uroporphyrinogen 37.1 1.7E+02 0.0036 28.5 8.1 126 84-232 60-197 (249)
108 TIGR02415 23BDH acetoin reduct 37.0 4E+02 0.0086 25.8 11.9 35 76-110 1-35 (254)
109 PLN02448 UDP-glycosyltransfera 37.0 1E+02 0.0022 34.3 7.3 104 73-183 9-125 (459)
110 PRK05773 3,4-dihydroxy-2-butan 36.7 50 0.0011 34.1 4.5 37 555-591 166-208 (219)
111 PRK09134 short chain dehydroge 36.5 4E+02 0.0086 26.1 10.7 34 74-107 8-41 (258)
112 PRK05993 short chain dehydroge 36.4 4.3E+02 0.0092 26.5 11.1 39 75-113 4-42 (277)
113 PF08727 P3A: Poliovirus 3A pr 36.3 13 0.00029 30.9 0.3 16 573-588 26-41 (57)
114 PRK07985 oxidoreductase; Provi 36.1 2.8E+02 0.0061 28.3 9.9 31 76-106 50-80 (294)
115 PRK07856 short chain dehydroge 36.0 1.7E+02 0.0037 28.6 8.0 34 76-109 7-40 (252)
116 PRK06947 glucose-1-dehydrogena 35.9 3.7E+02 0.008 26.0 10.3 31 75-105 2-32 (248)
117 PRK08057 cobalt-precorrin-6x r 35.5 49 0.0011 34.3 4.3 45 549-594 176-222 (248)
118 cd06379 PBP1_iGluR_NMDA_NR1 N- 35.5 1.4E+02 0.003 31.4 7.7 98 490-594 1-116 (377)
119 PRK06603 enoyl-(acyl carrier p 35.3 4.1E+02 0.009 26.4 10.7 125 76-222 9-149 (260)
120 PRK00366 ispG 4-hydroxy-3-meth 35.2 38 0.00083 37.3 3.6 48 540-590 81-133 (360)
121 PRK08936 glucose-1-dehydrogena 35.1 2.2E+02 0.0048 28.0 8.7 33 75-107 7-39 (261)
122 PRK06138 short chain dehydroge 35.0 2.2E+02 0.0047 27.5 8.5 39 76-114 6-44 (252)
123 PLN02871 UDP-sulfoquinovose:DA 35.0 3.9E+02 0.0084 29.2 11.3 33 73-105 56-97 (465)
124 cd06330 PBP1_Arsenic_SBP_like 34.7 60 0.0013 33.2 4.8 73 522-594 19-98 (346)
125 cd04732 HisA HisA. Phosphorib 34.6 68 0.0015 31.6 5.0 23 154-179 85-107 (234)
126 PF13561 adh_short_C2: Enoyl-( 34.4 85 0.0018 30.6 5.6 105 89-220 10-134 (241)
127 PF13524 Glyco_trans_1_2: Glyc 34.3 1.5E+02 0.0031 24.8 6.3 47 204-253 32-78 (92)
128 PRK07063 short chain dehydroge 34.2 97 0.0021 30.4 6.0 38 76-113 8-45 (260)
129 PRK07576 short chain dehydroge 34.1 71 0.0015 31.8 5.1 38 76-113 10-47 (264)
130 PRK06124 gluconate 5-dehydroge 34.0 2.2E+02 0.0048 27.8 8.4 39 76-114 12-50 (256)
131 PRK07792 fabG 3-ketoacyl-(acyl 33.8 3.6E+02 0.0079 27.7 10.3 31 76-106 13-43 (306)
132 cd00452 KDPG_aldolase KDPG and 33.6 57 0.0012 31.8 4.2 34 554-590 67-100 (190)
133 PF00106 adh_short: short chai 33.5 66 0.0014 29.1 4.4 121 76-223 1-138 (167)
134 COG3967 DltE Short-chain dehyd 33.4 1.2E+02 0.0027 31.7 6.6 107 77-207 7-118 (245)
135 PRK08213 gluconate 5-dehydroge 33.3 2.1E+02 0.0045 28.1 8.1 38 76-113 13-50 (259)
136 PRK09372 ribonuclease activity 33.3 1.2E+02 0.0025 29.7 6.2 64 525-595 47-114 (159)
137 PF13407 Peripla_BP_4: Peripla 33.3 74 0.0016 30.8 4.9 43 552-594 44-87 (257)
138 PRK08643 acetoin reductase; Va 33.2 2.2E+02 0.0047 27.8 8.2 35 76-110 3-37 (256)
139 PRK08339 short chain dehydroge 32.9 94 0.002 31.0 5.8 37 76-112 9-45 (263)
140 PRK11133 serB phosphoserine ph 32.9 1.2E+02 0.0026 32.5 6.8 82 85-173 183-270 (322)
141 PRK07028 bifunctional hexulose 32.7 1.1E+02 0.0024 33.7 6.6 62 527-595 281-345 (430)
142 PF02571 CbiJ: Precorrin-6x re 32.6 61 0.0013 33.6 4.4 45 549-594 180-226 (249)
143 PRK05678 succinyl-CoA syntheta 32.5 54 0.0012 34.8 4.1 38 554-591 80-120 (291)
144 PRK12823 benD 1,6-dihydroxycyc 32.1 4.9E+02 0.011 25.4 11.0 32 76-107 9-40 (260)
145 PRK00881 purH bifunctional pho 31.9 73 0.0016 36.7 5.2 111 472-593 238-353 (513)
146 KOG4127 Renal dipeptidase [Pos 31.4 1.3E+02 0.0028 33.7 6.7 85 150-247 283-382 (419)
147 PF02593 dTMP_synthase: Thymid 31.3 60 0.0013 33.4 4.1 38 555-592 68-108 (217)
148 PRK07478 short chain dehydroge 31.1 1.1E+02 0.0023 30.0 5.7 39 76-114 7-45 (254)
149 COG1184 GCD2 Translation initi 30.9 96 0.0021 33.5 5.7 50 76-125 120-179 (301)
150 PRK07825 short chain dehydroge 30.9 1.6E+02 0.0036 29.1 7.0 39 76-114 6-44 (273)
151 PF01071 GARS_A: Phosphoribosy 30.8 75 0.0016 32.1 4.6 56 325-381 19-77 (194)
152 PRK07775 short chain dehydroge 30.8 2.6E+02 0.0056 28.0 8.5 127 75-221 10-147 (274)
153 PRK10786 ribD bifunctional dia 30.8 97 0.0021 33.8 5.8 83 502-591 28-123 (367)
154 cd01284 Riboflavin_deaminase-r 30.7 1.8E+02 0.0038 26.8 6.7 77 489-568 5-93 (115)
155 PRK09140 2-dehydro-3-deoxy-6-p 30.6 66 0.0014 32.3 4.2 35 554-591 74-108 (206)
156 PRK13753 dihydropteroate synth 30.6 1.6E+02 0.0034 31.5 7.1 54 539-597 76-129 (279)
157 TIGR01963 PHB_DH 3-hydroxybuty 30.4 1.1E+02 0.0024 29.5 5.6 34 76-109 2-35 (255)
158 PLN02572 UDP-sulfoquinovose sy 30.3 1E+02 0.0022 34.1 5.9 37 68-106 40-78 (442)
159 PF01548 DEDD_Tnp_IS110: Trans 29.9 28 0.00062 31.6 1.4 60 79-138 25-94 (144)
160 CHL00200 trpA tryptophan synth 29.8 62 0.0013 33.9 4.0 39 554-592 110-149 (263)
161 TIGR00326 eubact_ribD riboflav 29.7 2.1E+02 0.0046 30.6 8.1 97 488-591 4-117 (344)
162 PF02603 Hpr_kinase_N: HPr Ser 29.5 61 0.0013 30.0 3.5 42 554-595 72-113 (127)
163 TIGR01133 murG undecaprenyldip 29.5 79 0.0017 32.1 4.6 47 77-123 2-56 (348)
164 PRK09072 short chain dehydroge 29.2 4.5E+02 0.0098 25.8 9.8 39 76-114 6-44 (263)
165 PRK12745 3-ketoacyl-(acyl-carr 29.2 3.7E+02 0.008 26.1 9.0 33 76-108 3-35 (256)
166 cd06320 PBP1_allose_binding Pe 29.1 73 0.0016 31.1 4.2 41 555-595 49-90 (275)
167 TIGR03467 HpnE squalene-associ 28.9 79 0.0017 33.0 4.6 56 108-167 2-63 (419)
168 TIGR00542 hxl6Piso_put hexulos 28.7 1.7E+02 0.0037 29.7 6.9 39 554-592 98-151 (279)
169 PRK13361 molybdenum cofactor b 28.6 2.3E+02 0.005 30.0 8.0 50 74-123 61-121 (329)
170 TIGR03363 VI_chp_8 type VI sec 28.6 40 0.00086 36.5 2.4 63 352-440 12-76 (353)
171 TIGR01019 sucCoAalpha succinyl 28.4 66 0.0014 34.1 4.0 38 554-591 78-118 (286)
172 PRK07791 short chain dehydroge 28.4 3.3E+02 0.0072 27.7 8.9 31 76-106 7-37 (286)
173 PRK08227 autoinducer 2 aldolas 28.3 44 0.00096 35.2 2.6 38 555-592 99-145 (264)
174 PRK06125 short chain dehydroge 28.3 3.5E+02 0.0077 26.5 8.8 39 76-114 8-46 (259)
175 COG1803 MgsA Methylglyoxal syn 28.0 1.4E+02 0.0031 29.0 5.6 51 74-124 4-58 (142)
176 TIGR01382 PfpI intracellular p 28.0 2.1E+02 0.0046 26.4 6.9 45 85-143 78-122 (166)
177 PRK08263 short chain dehydroge 27.8 3.1E+02 0.0067 27.3 8.4 39 76-114 4-42 (275)
178 cd06268 PBP1_ABC_transporter_L 27.6 80 0.0017 30.3 4.1 74 522-595 19-98 (298)
179 PRK13209 L-xylulose 5-phosphat 27.5 1.6E+02 0.0035 29.7 6.5 39 554-592 103-156 (283)
180 TIGR00723 ttdB_fumA_fumB hydro 27.5 91 0.002 31.1 4.4 31 557-589 79-110 (168)
181 PLN02591 tryptophan synthase 27.2 70 0.0015 33.3 3.8 39 554-592 97-136 (250)
182 PRK06914 short chain dehydroge 27.1 2.5E+02 0.0055 27.8 7.6 38 76-113 4-41 (280)
183 PRK06114 short chain dehydroge 27.0 5.2E+02 0.011 25.3 9.8 32 76-107 9-40 (254)
184 PRK00726 murG undecaprenyldiph 27.0 83 0.0018 32.5 4.3 49 76-124 2-58 (357)
185 PRK06139 short chain dehydroge 27.0 1.5E+02 0.0032 31.4 6.2 39 76-114 8-46 (330)
186 PRK13210 putative L-xylulose 5 27.0 2E+02 0.0043 28.9 6.9 39 554-592 98-151 (284)
187 cd04509 PBP1_ABC_transporter_G 26.9 73 0.0016 30.5 3.7 75 521-595 18-99 (299)
188 TIGR03863 PQQ_ABC_bind ABC tra 26.9 80 0.0017 33.7 4.3 75 520-594 11-90 (347)
189 cd01988 Na_H_Antiporter_C The 26.8 73 0.0016 27.5 3.4 40 557-597 63-104 (132)
190 PRK11780 isoprenoid biosynthes 26.7 89 0.0019 31.7 4.4 113 99-222 16-138 (217)
191 PRK06398 aldose dehydrogenase; 26.7 1.7E+02 0.0037 29.0 6.4 32 76-107 7-38 (258)
192 PRK06194 hypothetical protein; 26.7 2E+02 0.0043 28.7 6.8 39 76-114 7-45 (287)
193 PF01939 DUF91: Protein of unk 26.6 55 0.0012 33.9 2.9 31 412-444 183-213 (228)
194 PRK05627 bifunctional riboflav 26.5 1.5E+02 0.0033 31.6 6.3 64 153-224 72-156 (305)
195 PRK10860 tRNA-specific adenosi 26.4 1.5E+02 0.0032 29.2 5.7 62 503-568 37-108 (172)
196 KOG1203 Predicted dehydrogenas 26.1 4.2E+02 0.009 30.0 9.7 78 73-152 77-166 (411)
197 PRK01792 ribB 3,4-dihydroxy-2- 26.1 77 0.0017 32.6 3.8 37 555-591 157-200 (214)
198 TIGR01496 DHPS dihydropteroate 26.0 2.8E+02 0.0061 28.8 7.9 53 539-596 75-127 (257)
199 PF02602 HEM4: Uroporphyrinoge 25.8 80 0.0017 30.7 3.8 126 84-232 50-188 (231)
200 COG0569 TrkA K+ transport syst 25.7 1.5E+02 0.0033 29.9 5.9 95 89-231 13-112 (225)
201 COG0108 RibB 3,4-dihydroxy-2-b 25.6 76 0.0016 32.6 3.6 38 555-592 146-190 (203)
202 PRK05872 short chain dehydroge 25.5 1.2E+02 0.0026 30.9 5.1 39 76-114 10-48 (296)
203 PRK06483 dihydromonapterin red 25.5 1.9E+02 0.0041 27.9 6.3 34 75-108 2-35 (236)
204 PRK08228 L(+)-tartrate dehydra 25.5 1E+02 0.0022 31.7 4.4 30 558-589 93-122 (204)
205 PRK08177 short chain dehydroge 25.4 2E+02 0.0044 27.6 6.4 35 76-110 2-36 (225)
206 PRK07106 5-aminoimidazole-4-ca 25.3 2.2E+02 0.0048 31.9 7.3 97 472-573 27-145 (390)
207 PRK05653 fabG 3-ketoacyl-(acyl 25.3 3.1E+02 0.0067 26.1 7.6 37 76-112 6-42 (246)
208 PRK08226 short chain dehydroge 25.3 6E+02 0.013 24.8 9.8 34 76-109 7-40 (263)
209 cd01301 rDP_like renal dipepti 25.0 1.7E+02 0.0036 31.3 6.2 81 151-247 207-304 (309)
210 cd06341 PBP1_ABC_ligand_bindin 24.9 1.6E+02 0.0034 30.1 5.8 74 521-595 18-98 (341)
211 PRK07904 short chain dehydroge 24.8 6.6E+02 0.014 25.0 10.1 36 73-108 6-42 (253)
212 PRK07062 short chain dehydroge 24.7 1.2E+02 0.0025 29.9 4.7 39 76-114 9-47 (265)
213 PF00383 dCMP_cyt_deam_1: Cyti 24.6 2E+02 0.0044 24.6 5.6 77 489-568 8-99 (102)
214 PRK08245 hypothetical protein; 24.5 1.8E+02 0.0039 29.9 6.2 63 526-595 78-144 (240)
215 KOG1610 Corticosteroid 11-beta 24.1 1.2E+02 0.0026 33.2 4.9 31 76-106 30-60 (322)
216 PF13173 AAA_14: AAA domain 24.1 1.1E+02 0.0025 27.4 4.2 46 85-142 73-122 (128)
217 COG4109 Predicted transcriptio 24.0 63 0.0014 36.0 2.9 98 483-598 65-168 (432)
218 cd01285 nucleoside_deaminase N 24.0 1.9E+02 0.0041 25.7 5.5 77 489-568 5-93 (109)
219 PLN02389 biotin synthase 24.0 1.8E+02 0.0039 32.1 6.3 80 86-175 153-237 (379)
220 PRK13111 trpA tryptophan synth 23.9 83 0.0018 32.8 3.6 38 555-592 109-147 (258)
221 TIGR01458 HAD-SF-IIA-hyp3 HAD- 23.8 7.8E+02 0.017 25.1 10.6 106 74-224 37-148 (257)
222 PRK12859 3-ketoacyl-(acyl-carr 23.8 4.2E+02 0.0091 26.1 8.4 30 76-105 7-38 (256)
223 PRK01033 imidazole glycerol ph 23.7 1.3E+02 0.0027 31.0 4.9 95 87-221 31-131 (258)
224 TIGR03325 BphB_TodD cis-2,3-di 23.7 2E+02 0.0044 28.3 6.2 39 76-114 6-44 (262)
225 cd01391 Periplasmic_Binding_Pr 23.6 94 0.002 28.7 3.6 43 554-596 49-91 (269)
226 PRK12742 oxidoreductase; Provi 23.6 6.5E+02 0.014 24.0 10.8 31 76-106 7-37 (237)
227 KOG1205 Predicted dehydrogenas 23.3 2.3E+02 0.0049 30.4 6.7 156 76-264 13-183 (282)
228 COG2185 Sbm Methylmalonyl-CoA 23.2 4.1E+02 0.0088 26.0 7.8 80 73-172 10-99 (143)
229 PRK09856 fructoselysine 3-epim 23.1 1.2E+02 0.0027 30.4 4.6 50 542-591 5-64 (275)
230 cd00423 Pterin_binding Pterin 23.1 4.1E+02 0.009 27.3 8.5 53 539-596 76-129 (258)
231 PLN02173 UDP-glucosyl transfer 23.0 1.5E+02 0.0033 33.3 5.7 92 88-184 22-122 (449)
232 PRK05301 pyrroloquinoline quin 22.8 2.3E+02 0.005 30.3 6.9 83 75-166 63-156 (378)
233 cd04726 KGPDC_HPS 3-Keto-L-gul 22.8 1E+02 0.0022 29.6 3.8 37 556-592 70-108 (202)
234 TIGR00290 MJ0570_dom MJ0570-re 22.8 3.3E+02 0.0071 28.1 7.6 71 84-180 70-149 (223)
235 cd00293 USP_Like Usp: Universa 22.7 1.2E+02 0.0026 25.3 3.8 35 561-596 67-102 (130)
236 PRK07315 fructose-bisphosphate 22.7 2.9E+02 0.0063 29.4 7.4 58 202-259 64-133 (293)
237 PRK08265 short chain dehydroge 22.7 1.5E+02 0.0032 29.4 5.1 38 76-113 7-44 (261)
238 PRK09997 hydroxypyruvate isome 22.6 2.6E+02 0.0057 28.1 6.8 39 554-592 89-142 (258)
239 PRK06172 short chain dehydroge 22.6 1.3E+02 0.0028 29.3 4.5 38 76-113 8-45 (253)
240 PRK05939 hypothetical protein; 22.6 1.8E+02 0.0039 31.8 6.0 96 479-592 45-166 (397)
241 PRK10490 sensor protein KdpD; 22.6 1E+02 0.0023 37.3 4.6 88 507-597 249-346 (895)
242 PRK11188 rrmJ 23S rRNA methylt 22.4 3.9E+02 0.0085 26.5 7.9 66 161-233 111-180 (209)
243 PRK07109 short chain dehydroge 22.4 2.9E+02 0.0063 29.0 7.4 39 76-114 9-47 (334)
244 KOG3020 TatD-related DNase [Re 22.2 1.1E+02 0.0025 32.9 4.3 45 548-592 30-75 (296)
245 cd00613 GDC-P Glycine cleavage 22.2 1.1E+02 0.0025 32.0 4.3 41 554-594 150-196 (398)
246 cd06382 PBP1_iGluR_Kainate N-t 22.2 90 0.0019 31.8 3.5 73 518-594 11-94 (327)
247 cd06332 PBP1_aromatic_compound 22.1 1.1E+02 0.0023 30.8 4.0 73 522-594 19-96 (333)
248 PRK06953 short chain dehydroge 22.1 2.9E+02 0.0062 26.5 6.8 37 76-112 2-38 (222)
249 cd06342 PBP1_ABC_LIVBP_like Ty 22.0 1.2E+02 0.0026 30.6 4.3 41 554-594 57-97 (334)
250 COG4221 Short-chain alcohol de 21.9 2.3E+02 0.005 30.0 6.3 124 76-222 7-142 (246)
251 PF06941 NT5C: 5' nucleotidase 21.9 16 0.00035 35.2 -1.9 69 86-167 76-158 (191)
252 PRK00854 rocD ornithine--oxo-a 21.9 1.3E+02 0.0028 32.0 4.6 46 547-592 171-226 (401)
253 TIGR03128 RuMP_HxlA 3-hexulose 21.8 1.1E+02 0.0024 29.6 3.9 15 555-569 94-108 (206)
254 PRK09989 hypothetical protein; 21.8 1.1E+02 0.0024 30.8 4.0 43 549-594 16-60 (258)
255 PRK07774 short chain dehydroge 21.6 2E+02 0.0044 27.8 5.6 37 76-112 7-43 (250)
256 PRK00208 thiG thiazole synthas 21.6 1.7E+02 0.0037 31.0 5.3 96 73-174 92-204 (250)
257 COG1646 Predicted phosphate-bi 21.6 4.4E+02 0.0095 27.9 8.2 102 451-595 120-221 (240)
258 PRK13790 phosphoribosylamine-- 21.5 28 0.0006 37.6 -0.4 118 80-231 11-134 (379)
259 PF14394 DUF4423: Domain of un 21.5 77 0.0017 31.1 2.7 32 209-246 119-150 (171)
260 PRK08251 short chain dehydroge 21.4 5.1E+02 0.011 25.0 8.4 38 76-113 3-40 (248)
261 PRK04073 rocD ornithine--oxo-a 21.3 1.3E+02 0.0028 32.2 4.6 46 547-592 170-225 (396)
262 TIGR00124 cit_ly_ligase [citra 21.3 7.9E+02 0.017 26.7 10.5 110 100-253 87-198 (332)
263 PRK11706 TDP-4-oxo-6-deoxy-D-g 21.1 1.7E+02 0.0036 31.2 5.4 44 547-592 105-151 (375)
264 cd06331 PBP1_AmiC_like Type I 21.0 1E+02 0.0022 31.6 3.5 70 524-593 21-97 (333)
265 cd01292 metallo-dependent_hydr 21.0 1.3E+02 0.0029 28.5 4.2 42 554-595 39-88 (275)
266 KOG0725 Reductases with broad 20.8 6E+02 0.013 26.4 9.2 133 74-222 7-152 (270)
267 TIGR03821 AblA_like_1 lysine-2 20.7 2.8E+02 0.0061 29.7 6.9 90 484-591 159-268 (321)
268 TIGR01935 NOT-MenG RraA famliy 20.7 2.6E+02 0.0057 27.1 6.1 64 525-595 43-110 (150)
269 TIGR00624 tag DNA-3-methyladen 20.5 82 0.0018 31.6 2.7 30 88-117 139-168 (179)
270 KOG3075 Ribose 5-phosphate iso 20.5 2.4E+02 0.0052 30.1 6.1 72 481-565 21-92 (261)
271 PRK06201 hypothetical protein; 20.4 2.3E+02 0.0049 28.9 5.9 63 526-595 70-136 (221)
272 TIGR02198 rfaE_dom_I rfaE bifu 20.4 3.8E+02 0.0083 27.2 7.6 41 87-127 49-98 (315)
273 PRK07832 short chain dehydroge 20.4 2.3E+02 0.005 28.2 5.9 37 77-113 2-38 (272)
274 COG3830 ACT domain-containing 20.3 1.4E+02 0.0031 27.1 3.9 29 76-104 2-33 (90)
275 cd06339 PBP1_YraM_LppC_lipopro 20.2 1.9E+02 0.0041 30.1 5.4 71 523-594 20-90 (336)
No 1
>PLN02891 IMP cyclohydrolase
Probab=100.00 E-value=6.5e-224 Score=1775.28 Aligned_cols=546 Identities=84% Similarity=1.293 Sum_probs=513.7
Q ss_pred ccccccccccCCCCCCCCCCCCCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCC
Q 007518 53 MAHSHTVSVPTNQPQSSSSSQANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEML 132 (600)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEil 132 (600)
||.+.+++-.+.+||+|.||+ .+|||||||||+||++||+.|.++||||+|||||+++|+++||+|++|++||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~krALISVsDKtgi~~fAk~L~~~gveIiSTgGTak~L~e~Gi~v~~Vsd~TgfPEiL 79 (547)
T PLN02891 1 MAASATAARAPAQPQSSPSSG-KKQALISLSDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEML 79 (547)
T ss_pred CCcccccccccccccCCCCcc-ccEEEEEEecccCHHHHHHHHHHCCCEEEEcchHHHHHHHcCCceeeHHhccCCchhh
Confidence 444555555555777766665 8899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccccccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCC
Q 007518 133 DGRVKTLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNH 212 (600)
Q Consensus 133 dGRVKTLHPkIhGGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~ 212 (600)
|||||||||+||||||+||++++|+++|++|||++|||||||||||++||+++ ++++||+|||||||||||||||||||
T Consensus 80 ~GRVKTLHPkIhgGILa~r~~~~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~-~~~~ee~IEnIDIGGpsmlRAAAKN~ 158 (547)
T PLN02891 80 DGRVKTLHPAVHGGILARRDQEHHMEALNEHGIGTIDVVVVNLYPFYDTVTSG-GISFEDGVENIDIGGPAMIRAAAKNH 158 (547)
T ss_pred CCcccccCchhhhhhhcCCCCHHHHHHHHHcCCCceeeEEEeccChHHHHhcC-CCCHHHHHHhccCCcHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred CCEEEEeCCCCHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccccccCC
Q 007518 213 KDVLVVVGSEDYPALLEFLKGNQDDQ-QFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGE 291 (600)
Q Consensus 213 ~~V~Vv~dP~DY~~vl~eL~~G~~s~-~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGE 291 (600)
++|+|||||+||+.++++|+.|.+++ ++|++||.|||+|||+||++|++||+++...+..||+.+.+.|++.|+|||||
T Consensus 159 ~~V~Vv~dP~DY~~vl~el~~g~~~~~~~R~~LA~kAF~~Ta~YD~~Ia~yl~~~~~~~~~~p~~~~~~~~k~~~LRYGE 238 (547)
T PLN02891 159 KDVLVVVDPADYPALLEYLKGKQDDQQDFRRKLAWKAFQHVASYDSAVSEWLWKQINGGGKFPPSLTVPLTLKSSLRYGE 238 (547)
T ss_pred CCeEEECCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhhcccccccCCCCC
Confidence 99999999999999999999888997 99999999999999999999999998654211249999999999999999999
Q ss_pred CcccccccccccchhhhccCCccccccccCCCCCCchhhcHHHHHHHHHhcCCCeEEEEccCCcccccccCCHHHHHHHH
Q 007518 292 NPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLA 371 (600)
Q Consensus 292 NPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~l~eAy~~A 371 (600)
||||+|+||.++.......+++..++||||||||||||+|+|+||+||+||++|+||||||+||||||+++|+.|||++|
T Consensus 239 NPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKelSyNN~lD~daA~~~v~ef~~pa~vivKH~nPCGvA~~~~~~eAy~~A 318 (547)
T PLN02891 239 NPHQKAAFYVDKSLSEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFSNPTCVVVKHTNPCGVASRGDILEAYRLA 318 (547)
T ss_pred CcccCcceeecCcccccccccchhhHHhcCCCCCcchhhchHHHHHHHHhcCcCeeeeecccCccceeecCCHHHHHHHH
Confidence 99999999975421000124689999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecCCCCCCceE
Q 007518 372 VKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSL 451 (600)
Q Consensus 372 ~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~~~~~~~~ 451 (600)
|+|||+|||||||||||+||.++|++|.+.|+|+|||++.|+||||||+|++||||||++|+||||||+++......+++
T Consensus 319 ~~~Dp~SaFGGIvA~Nr~vd~~~A~~i~~~~~~~d~~~~~F~EvviAP~f~~eAleiL~~K~knlRvL~~~~~~~~~~~~ 398 (547)
T PLN02891 319 VRADPVSAFGGIVAFNCEVDEDLAREIREFRSPTDGETRMFYEIVVAPKYTEKGLEVLKGKSKTLRILEAKPRKKGRLSL 398 (547)
T ss_pred HhcCCccccCCEEEEcCccCHHHHHHHHhhccccccccceeEEEEEcCCCCHHHHHHHHhcCCCEEEEEecCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999876799999995333356899
Q ss_pred EEEceeEEEecCCCCCCCcccceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHH
Q 007518 452 RQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMK 531 (600)
Q Consensus 452 r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~ 531 (600)
|+|.||+|+|++|...+++.+|+|||+++||++||+||+|||+||||||||||||+||++|||||+||||||||+|+|++
T Consensus 399 r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~DL~FAwkvvK~vKSNAIV~akd~~tvGIGaGQ~sRVda~~iA~~ 478 (547)
T PLN02891 399 RQVGGGWLAQDSDDLTPEDITFTVVSEKVPTESELEDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALE 478 (547)
T ss_pred EEEeeEEEEECCCCCCCCHHHCeecCCCCcCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHH
Confidence 99999999999999888778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCccCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccCCC
Q 007518 532 KAGDEVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600 (600)
Q Consensus 532 kA~~~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHFrH 600 (600)
||+++++|+||||||||||+|.|+||+|+++||+|||||||||||+|||++||||||+|||||+|||||
T Consensus 479 kA~~~~~G~vlASDAFFPF~~~D~ve~aa~~Gv~aIIQPGGSiRD~evI~aane~giaMvfTg~RhFrH 547 (547)
T PLN02891 479 KAGEEAKGAALASDAFFPFAWNDAVEEACQAGVKVIAEPGGSMRDQDAIDCCNKYGVALLFTGVRHFRH 547 (547)
T ss_pred HhccccCCeEEEecccCCCCCCccHHHHHHhCCEEEECCCCCCCcHHHHHHHHHhCCEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
No 2
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=100.00 E-value=5.8e-215 Score=1704.14 Aligned_cols=505 Identities=52% Similarity=0.825 Sum_probs=485.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+||||||+||+++++||+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++++
T Consensus 1 kraLISVsDK~~iv~lAk~L~~lGfeIiATgGTak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~ 80 (511)
T TIGR00355 1 RRALLSVSDKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDD 80 (511)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEechHHHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhC-C
Q 007518 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG-N 234 (600)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~-G 234 (600)
+++|++|||++|||||||||||++||+++ +++++|+|||||||||||||||||||++|+|||||+||+.++++|+. |
T Consensus 81 -~~~l~~~~I~~IDlVvvNLYPF~~tv~~~-~~~~~e~IEnIDIGGptmlRaAAKN~~~V~Vv~dp~dY~~vl~el~~~g 158 (511)
T TIGR00355 81 -DADLEEHGIEPIDLVVVNLYPFKETVAKP-GVTLAEAVENIDIGGPTMLRAAAKNHADVTILVDPKDYSAILSELDEQG 158 (511)
T ss_pred -HHHHHHcCCCceeEEEEeccChHHHhccC-CCCHHHHHHhccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999997 99999999999999999999999999999999999999999999986 9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCCcc
Q 007518 235 QDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGGIA 314 (600)
Q Consensus 235 ~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~ 314 (600)
++|+++|++||.|||+|||+||++|++||+++..+ .||+.+++.|++.|+|||||||||+|+||.++.. ..+++.
T Consensus 159 ~~s~~~R~~lA~kAF~~Ta~YD~~Ia~yl~~~~~~--~~p~~~~~~~~k~~~LRYGENPHQ~Aa~Y~~~~~---~~~~~~ 233 (511)
T TIGR00355 159 SISLALRFDLAIKAFEHTAAYDAAIANYFGKLVGE--KEPRQFNLNFTKKQTLRYGENPHQKAAFYVTQNV---KEGSVA 233 (511)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchhhhhcceeccccCCCCCcccceeeecccCc---CCcccc
Confidence 99999999999999999999999999999865432 3899999999999999999999999999975410 124678
Q ss_pred ccccccCCCCCCchhhcHHHHHHHHHhcCCCeEEEEccCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEEccccCHHH
Q 007518 315 TAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEAL 394 (600)
Q Consensus 315 ~~~ql~GKeLSYNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~l~eAy~~A~~~DpvSaFGGIVA~Nr~vD~~t 394 (600)
.++|||||+||||||+|+|+||+||+||++|+||||||+||||+|+++|+.|||++||+|||+|||||||||||+||++|
T Consensus 234 ~~~qL~GKelSyNNilD~daA~~~v~ef~~pa~vivKH~nPCGvA~~~~l~~Ay~~A~~~Dp~SaFGGiva~N~~vd~~~ 313 (511)
T TIGR00355 234 TAEQLQGKELSYNNIADADAALEIVKEFDEPAAVIVKHANPCGVALGKTILDAYDRAFGADPTSAFGGIIALNRELDVPT 313 (511)
T ss_pred ceeeecCCCCCccchhchHHHHHHHHhcCCCcEEEEecCCcceeecCCCHHHHHHHHHhcCCccccCCEEEECCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecC--CCCCCceEEEEceeEEEecCCCCCCCccc
Q 007518 395 AKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKK--NKKGKLSLRQVGGGWLAQDSDDLTPEDIQ 472 (600)
Q Consensus 395 A~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~--~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~ 472 (600)
|++|.++ |+||||||+|++|||+||++| ||||||++.. ...+.+++|+|.||+|+|++|...++..+
T Consensus 314 A~~i~~~----------F~EvviAP~f~~eAl~iL~~K-KnlRll~~~~~~~~~~~~~~r~v~GG~LvQ~~d~~~~~~~~ 382 (511)
T TIGR00355 314 AKAIVRQ----------FLEVIIAPGYSAEALEILAKK-KNLRVLILGIWANRVPELDFKRVNGGLLVQDRDDGMVDQST 382 (511)
T ss_pred HHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCEEEEEecCCCCCCCCceEEEEeeEEEEECCCCCCCChhh
Confidence 9999999 999999999999999999999 9999999942 11346899999999999999998887889
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHc---CCccCceEEeeccccc
Q 007518 473 FKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKA---GDEVKGAALASDAFFP 549 (600)
Q Consensus 473 ~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA---~~~~~GavlASDAFFP 549 (600)
|+|||+++||++||+||+||||||||||||||||+||++|||||+||||||||+|+|++|| +.+++|+|||||||||
T Consensus 383 ~~vVt~~~pt~~e~~dL~FAwkv~k~vKSNAIv~akd~~tvGiGaGQ~sRV~s~riA~~kA~~~~~~~~G~vlASDAFFP 462 (511)
T TIGR00355 383 LKVVTKRQPTEQELIDLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMSRVGSAKIAGIKADDEGLEAKGSSLASDAFFP 462 (511)
T ss_pred ceeeCCCCCCHHHHHHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHHHHHhhCCCccCcEEEeccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999 6789999999999999
Q ss_pred CCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccCCC
Q 007518 550 FAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600 (600)
Q Consensus 550 F~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHFrH 600 (600)
|+ |+||.|+++||+|||||||||||+|||++||||||+|||||+|||||
T Consensus 463 F~--D~ve~aa~aGi~aIiQPGGSiRD~evI~aa~e~giaMvfTg~RhFrH 511 (511)
T TIGR00355 463 FR--DGVEEAAAAGITCIIQPGGSMRDEDSIWAADEHGIVMVFTGMRHFRH 511 (511)
T ss_pred CC--ccHHHHHHcCCEEEEcCCCCCCcHHHHHHHHHhCCEEEECCCCCCCC
Confidence 99 99999999999999999999999999999999999999999999999
No 3
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.7e-212 Score=1664.05 Aligned_cols=507 Identities=55% Similarity=0.880 Sum_probs=489.6
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCC
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~ 153 (600)
+++|+|||||||+|+++|||.|.++||+|+|||||+++|+++||+|++||++||||||||||||||||+||||||+||+.
T Consensus 1 ~ikrALiSVsdKtGive~ak~L~~~gvei~STGGTak~l~eaGi~V~~Vs~~TgfpE~ldGRVKTLHP~ihgGiL~~r~~ 80 (515)
T COG0138 1 MIKRALLSVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDITGFPEMLDGRVKTLHPKIHGGILARRDK 80 (515)
T ss_pred CcchhheeeccccChHHHHHHHHhCCEEEEecCCHHHHHHhCCCCCCchhhccCChhHhCCcceeeccccccceeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhC
Q 007518 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (600)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~ 233 (600)
++|+++|++|+|.+|||||||||||++|++++ +++++|+|||||||||||||||||||++|+|||||.||+.++++|+.
T Consensus 81 ~~h~~~l~e~~I~~iDlVvvNLYPF~~tv~~~-~~~~~e~vEnIDIGGptmlRaAAKN~~~V~V~~dp~Dy~~vl~~l~~ 159 (515)
T COG0138 81 DEHMAALEEHGIEPIDLVVVNLYPFEETVAKP-GVTLEEAVENIDIGGPTMLRAAAKNHKDVTVVVDPADYAAVLEELKA 159 (515)
T ss_pred HHHHHHHHHcCCCCccEEEEcCCChhhhccCC-CCCHHHHHhccccCchHHhHHhhhccCCeeEEecchhhHHHHHHHhc
Confidence 99999999999999999999999999999997 99999999999999999999999999999999999999999999996
Q ss_pred -CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCC
Q 007518 234 -NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312 (600)
Q Consensus 234 -G~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~ 312 (600)
|++|+++|++||.|||+|||+||++|++||.+.++. .||+.+.+.+.+++.|||||||||+|+||.+... .++
T Consensus 160 ~~~~~~~~R~~lA~kaF~hTA~YDaaI~~~~~~~~~~--~fp~~~~~~~~~~~~lRYGENPHQ~aa~Y~~~~~----~~~ 233 (515)
T COG0138 160 NGELSLATRKRLAAKAFEHTAAYDAAIANYFSELLGG--EFPEQLNLSFTKKQDLRYGENPHQSAAFYRDGNA----KGG 233 (515)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccc--ccchheecccccceeeecCCCCCCCCeEEecCCC----CCc
Confidence 699999999999999999999999999999986543 4999999999999999999999999999976521 247
Q ss_pred ccccccccCCCCCCchhhcHHHHHHHHHhcCC--CeEEEEccCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEEcccc
Q 007518 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKN--PTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEV 390 (600)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~--pa~vivKH~nPCGvA~~~~l~eAy~~A~~~DpvSaFGGIVA~Nr~v 390 (600)
+..++|||||+||||||+|+|+||+||+||++ |+||||||+||||||+++|+.+||++||+|||+||||||||+||+|
T Consensus 234 va~a~qL~GK~lSYNNi~DaDaA~~~v~ef~~~~pa~~ivKH~NPcGvA~~~~i~~Ay~~A~~~D~~SaFGGIIA~Nr~v 313 (515)
T COG0138 234 VATAKQLQGKELSYNNIADADAAWELVKEFDEPGPACAIVKHANPCGVAVGDTIAEAYKRAYEADPTSAFGGIIALNREV 313 (515)
T ss_pred hhhHHHhcCCcccccchhhHHHHHHHHHhcCCcCceEEEEecCCCchhccChhHHHHHHHHHcCCCccccCCEEEEcCcc
Confidence 99999999999999999999999999999997 5999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecCC-C-CCCceEEEEceeEEEecCCCCCC
Q 007518 391 DEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKN-K-KGKLSLRQVGGGWLAQDSDDLTP 468 (600)
Q Consensus 391 D~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~-~-~~~~~~r~v~GG~LvQ~~D~~~~ 468 (600)
|.+||+.|.++ |+||||||+|++|||+||++| ||||||+++.. . ...+++|+|.||+|+|++|...+
T Consensus 314 D~etA~~i~~~----------F~EvIIAP~~~~~Al~il~kK-~NlRvL~~~~~~~~~~~~~~k~v~GGlLvQ~~d~~~~ 382 (515)
T COG0138 314 DVETAEAISKI----------FLEVIIAPSYTEEALEILAKK-KNLRVLTIGPLGPRAAGLEFKRVSGGLLVQERDDGMI 382 (515)
T ss_pred CHHHHHHHHhh----------hEEEEEcCCCCHHHHHHHhhc-CceEEEecCCCCCCCcceeEEEEeeeEEEEccccccc
Confidence 99999999999 999999999999999999988 99999999864 2 24699999999999999999888
Q ss_pred CcccceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCc---cCceEEeec
Q 007518 469 EDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDE---VKGAALASD 545 (600)
Q Consensus 469 ~~~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~---~~GavlASD 545 (600)
+..+|+|||+|+||++||+||+||||||||||||||||+|||+|||||+||||||||+|||++||++. ++|+|||||
T Consensus 383 ~~~~~~vVTkr~pt~~e~~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~sRV~sariA~~kA~~~~~~~~Gav~ASD 462 (515)
T COG0138 383 DEAELKVVTKRQPTEQELEDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGLRAHGAVLASD 462 (515)
T ss_pred CccceeEecCCCCCHHHHHHHHHHHHHHhHhccceEEEEcCCeEEEecCCccchHHHHHHHHHHHHHhhhhccCcEEeec
Confidence 88999999999999999999999999999999999999999999999999999999999999999874 569999999
Q ss_pred ccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccCCC
Q 007518 546 AFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600 (600)
Q Consensus 546 AFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHFrH 600 (600)
|||||+ |+|+.|+++||+|||||||||||+|||++||||||+|||||+|||||
T Consensus 463 AFFPF~--D~i~~aA~aGi~aIIqPGGSirD~eVI~aAde~giaMvfTg~RhF~H 515 (515)
T COG0138 463 AFFPFP--DGIDAAAKAGIKAIIQPGGSIRDQEVIAAADEHGIAMVFTGVRHFRH 515 (515)
T ss_pred ccCCCc--chHHHHHHcCCeEEECCCCccccHHHHHHHHhcCcEEEEccccccCC
Confidence 999999 99999999999999999999999999999999999999999999999
No 4
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=100.00 E-value=1.2e-203 Score=1622.21 Aligned_cols=507 Identities=56% Similarity=0.877 Sum_probs=487.5
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCC
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~ 153 (600)
+|++|||||+||+++++||+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++
T Consensus 3 ~~~~aLISVsDK~~iv~lAk~L~~lGfeI~AT~GTak~L~e~GI~v~~V~k~TgfpEil~GRVKTLHP~IhgGiLa~r~~ 82 (513)
T PRK00881 3 MIKRALISVSDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGRVKTLHPKIHGGILARRDN 82 (513)
T ss_pred CcCEEEEEEeCcccHHHHHHHHHHCCCEEEEcchHHHHHHHCCCeeEEeecccCCchhcCCccccCCchhhhhhccCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhC
Q 007518 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (600)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~ 233 (600)
++|+++|++|||++|||||||||||++|++++ +++++++|||||||||||||||||||++|+|||||+||+.++++|+.
T Consensus 83 ~~h~~~l~~~~i~~IDlVvvNLYPF~~tv~~~-~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~Vv~dp~dY~~v~~~l~~ 161 (513)
T PRK00881 83 PEHVAALEEHGIEPIDLVVVNLYPFEETVAKP-GVTLEEAIENIDIGGPTMVRAAAKNHKDVAVVVDPADYDAVLEELKA 161 (513)
T ss_pred HHHHHHHHHcCCCceeEEEEeCcChHHHhccC-CCCHHHHHhcccCCcHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999987 89999999999999999999999999999999999999999999997
Q ss_pred -CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccccccCCCcccccccccccchhhhccCC
Q 007518 234 -NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKAAFYVDKSLAEVNAGG 312 (600)
Q Consensus 234 -G~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~Aa~Y~~~~~~~~~~~~ 312 (600)
|++|+++|++||.|||+|||+||++|++||+++.++ .||+.+++.|++.|+|||||||||+|+||.... ..++
T Consensus 162 ~g~~s~~~R~~lA~kAF~~ta~YD~~I~~yl~~~~~~--~~p~~~~~~~~~~~~LRYGENPHQ~aa~Y~~~~----~~~~ 235 (513)
T PRK00881 162 NGSTTLETRFRLAAKAFAHTAAYDAAIANYLTEQVGE--EFPETLNLSFEKKQDLRYGENPHQKAAFYRDPN----AEGG 235 (513)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCchhhhcchhhcccccCCCCCCcCceeeeccC----Cccc
Confidence 899999999999999999999999999999865432 489999999999999999999999999997542 1246
Q ss_pred ccccccccCCCCCCchhhcHHHHHHHHHhcCCCeEEEEccCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEEccccCH
Q 007518 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDE 392 (600)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~l~eAy~~A~~~DpvSaFGGIVA~Nr~vD~ 392 (600)
+.+++|||||+||||||+|+|+||+||+||++|+||||||+||||+|+++|+.+||++||+|||+|||||||||||+||+
T Consensus 236 ~~~~~ql~GK~lSyNN~lD~d~A~~~v~ef~~pa~vivKH~nPCGvA~~~~~~~Ay~~A~~~Dp~SaFGgiva~N~~vd~ 315 (513)
T PRK00881 236 VATAEQLQGKELSYNNIADADAALELVKEFDEPACVIVKHANPCGVAVGDTILEAYDKAYACDPVSAFGGIIAFNREVDA 315 (513)
T ss_pred ccccceecCCccCCcchhchHHHHHHHHhcCCCeEEEEecCCcceeecCCCHHHHHHHHHhcCCccccCCEEEECCccCH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecCCCCCCceEEEEceeEEEecCCCCCCCccc
Q 007518 393 ALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNKKGKLSLRQVGGGWLAQDSDDLTPEDIQ 472 (600)
Q Consensus 393 ~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~ 472 (600)
+||++|.++ |+||||||+|++|||+||++| ||||||++.......+++|+|.||+|+|++|...+++.+
T Consensus 316 ~~A~~i~~~----------f~EviiAP~~~~eAl~iL~~K-knlR~l~~~~~~~~~~~~r~v~Gg~LvQ~~d~~~~~~~~ 384 (513)
T PRK00881 316 ETAEAIHKI----------FLEVIIAPSFSEEALEILAKK-KNLRLLECPFPGGWEGDFKSVSGGLLVQDRDLGMVDPAD 384 (513)
T ss_pred HHHHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCeEEEEecCCCCCCeeEEEEeeeEEEECCCCCCcCccc
Confidence 999999999 999999999999999999999 999999995322346799999999999999988887889
Q ss_pred ceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCC---ccCceEEeeccccc
Q 007518 473 FKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGD---EVKGAALASDAFFP 549 (600)
Q Consensus 473 ~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~---~~~GavlASDAFFP 549 (600)
|++||+++||++||+||+|||+|||||||||||++||++|||||||||||||++++|++||++ +++|+|||||||||
T Consensus 385 ~~vvT~~~pt~~e~~Dl~faw~v~K~vkSNaIVvvkd~~~vgIgaGQ~sRvd~t~~Ai~rag~~~~~~~gav~aSDafFP 464 (513)
T PRK00881 385 LKVVTKRQPTEQELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAIEKAGDAGLDLKGAVLASDAFFP 464 (513)
T ss_pred ceeecCCCCCHHHHHHHHHHHHHHHhcCCCcEEEEeCCeEEEECCCCcchHHHHHHHHHHHHHhccCcCCeEEEeeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999964 46999999999999
Q ss_pred CCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccCCC
Q 007518 550 FAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600 (600)
Q Consensus 550 F~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHFrH 600 (600)
|+ |+||.|+++||++|||||||+||+|||++||||||+|+|||+|||||
T Consensus 465 f~--Dtie~aa~~Gv~aIiqPgGSirD~evI~aAne~gIamvfTg~RhF~H 513 (513)
T PRK00881 465 FR--DGVEAAAKAGITAIIQPGGSIRDEEVIAAADEHGIAMVFTGVRHFRH 513 (513)
T ss_pred ch--hHHHHHHHcCCeEEEeCCCCCChHHHHHHHHHcCCEEEECCCCCCCC
Confidence 99 99999999999999999999999999999999999999999999999
No 5
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.1e-155 Score=1205.63 Aligned_cols=492 Identities=46% Similarity=0.691 Sum_probs=455.5
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCC
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~ 153 (600)
.-+.||||||||+||++||+.|.++|+.|+||||||+.|+++|++|++|+++|+||||||||||||||.||||||+| |.
T Consensus 3 ~~k~AllSVsDKtgLl~La~gL~~~g~~lvaSGGTAk~lrdaG~~V~dVs~iT~fPEMLgGRVKTLHPaVHgGILAR-di 81 (588)
T KOG2555|consen 3 GTKLALLSVSDKTGLLDLAKGLVELGVTLVASGGTAKMLRDAGLPVRDVSEITHFPEMLGGRVKTLHPAVHGGILAR-DI 81 (588)
T ss_pred CceEEEEEeecccChHHHHhHHHhcCcEEEecCchHHHHHhCCCccchHHhhcCChHHhCCcccccccccccceeec-cC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999997 89
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhC
Q 007518 154 KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG 233 (600)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~ 233 (600)
++|+++|++|||..||+||||||||.+||+++ ++|++|+|||||||||||||||||||++|+|||||.||+.++++|+.
T Consensus 82 esd~kdL~e~~i~~vdvVVcNLYPF~etVa~p-gvtveeaVEnIDIGGvTLLRAAAKNH~rVtiv~dp~DY~~vlsel~~ 160 (588)
T KOG2555|consen 82 ESDEKDLKEQGIDKVDVVVCNLYPFKETVAKP-GVTVEEAVENIDIGGVTLLRAAAKNHARVTIVCDPADYDAVLSELKS 160 (588)
T ss_pred chhHHHHHHcCCCeEEEEEEeccchHhhhcCC-CCcHHHHhhhcccccHHHHHHHHhcCCcEEEEechhHHHHHHHHHhc
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccccccCCCccccc-ccccccchhhhccCC
Q 007518 234 NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSSLRYGENPHQKA-AFYVDKSLAEVNAGG 312 (600)
Q Consensus 234 G~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~LRYGENPHQ~A-a~Y~~~~~~~~~~~~ 312 (600)
++++...|.+.|+|||+|||.||++|++||++|..+ ......||||+||||++ .+|... +
T Consensus 161 ~~~~~d~~~r~aLKaf~Hta~yD~Aisd~frKQy~~-----------gvsq~slRYg~npHQ~paql~~~q--------~ 221 (588)
T KOG2555|consen 161 SEISQDLRNRRALKAFEHTASYDAAISDYFRKQYSE-----------GVSQLSLRYGMNPHQKPAQLYVVQ--------G 221 (588)
T ss_pred cccchhHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh-----------hhhhcchhcCCCcccChhhHhhhc--------C
Confidence 777777777777799999999999999999997542 23456799999999987 578532 3
Q ss_pred ccccccccCCCCCCchhhcHHHHHHHHHhcCC----CeEEEEccCCccccccc-------------CCHHH------HHH
Q 007518 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKN----PTCVIVKHTNPCGVASR-------------DDILE------AYK 369 (600)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~----pa~vivKH~nPCGvA~~-------------~~l~e------Ay~ 369 (600)
-.+++.|+| +++||||+|++++|.||+||.+ |+|+++||.||||+|+| +++.| ||+
T Consensus 222 ~lp~~vl~g-spgyiNl~DAln~w~lvkel~~~l~~paaasfKHvsPaGaAvg~pls~~e~kv~~v~Di~eltpla~AYa 300 (588)
T KOG2555|consen 222 KLPFKVLCG-SPGYINLLDALNSWPLVKELSENLGLPAAASFKHVSPAGAAVGLPLSDVEAKVYFVDDIYELTPLACAYA 300 (588)
T ss_pred CCceEEecC-CCchhhHHhhhcchhhhhHHHhhcCCcccceecccCcccccccCccchhhhheeehhhhhhcchHHHHHH
Confidence 456889999 6699999999999999999987 99999999999999996 46677 999
Q ss_pred HHHhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCC--ceEEEecCCC-C
Q 007518 370 LAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKN--LRILETKKNK-K 446 (600)
Q Consensus 370 ~A~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~Kn--lRlL~~~~~~-~ 446 (600)
+|+.+|++|+||++||+|..||..||+.|+ |+++|| ||||+|+||||+||+|| || ++||++++.+ +
T Consensus 301 rArgADrmSsFGdfvAls~~vDv~tAriIs--revsDG--------viApgYepeaLeiL~Kk-K~g~yciLq~dpny~p 369 (588)
T KOG2555|consen 301 RARGADRMSSFGDFVALSDVVDVVTARIIS--REVSDG--------VIAPGYEPEALEILSKK-KNGKYCILQMDPNYVP 369 (588)
T ss_pred HHhcCCccccccCeEEeeeehhhhhHhHhh--ccccCc--------eecCCCCHHHHHHHhcc-cCCceEEEEeCCCcCc
Confidence 999999999999999999999999999999 567777 99999999999999777 65 8999999876 4
Q ss_pred CCceEEEEceeEEEecCCCCCCCcccc-eeecCCCC-CHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHH
Q 007518 447 GKLSLRQVGGGWLAQDSDDLTPEDIQF-KVVSEKKP-QESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRE 524 (600)
Q Consensus 447 ~~~~~r~v~GG~LvQ~~D~~~~~~~~~-~vVT~~~P-t~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVd 524 (600)
...+.|+|+|++|.|++|+..++...| +|||+.++ ++..+.||+|||.++||+|||+|||||||++|||||||+|||.
T Consensus 370 ~~~e~rqv~G~~L~Qkrnda~i~~s~F~~vvsknk~l~e~a~~Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqsRih 449 (588)
T KOG2555|consen 370 GEVERRQVFGLTLQQKRNDAVIDQSLFSNVVSKNKDLPESALIDLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQSRIH 449 (588)
T ss_pred ccceeeeeeeEEeeeecCcCcchhHHHHHHhhcCCCcchHHHHHHHHHHHhhhhhccccEEEEeCCEEEeecCCCcccee
Confidence 579999999999999999998887777 68888765 5556899999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-----------------------------------------------------------------CccCc
Q 007518 525 SLRIAMKKAG-----------------------------------------------------------------DEVKG 539 (600)
Q Consensus 525 s~~iA~~kA~-----------------------------------------------------------------~~~~G 539 (600)
|.|+|..||. ++++|
T Consensus 450 ctRlAgdkadnwwlr~hp~vl~mkfkkgvkr~e~snaid~~v~g~~~e~~~~~~~~~~fe~~p~~~t~~e~~ewl~~l~~ 529 (588)
T KOG2555|consen 450 CTRLAGDKADNWWLRQHPKVLGMKFKKGVKRAEKSNAIDLYVTGTVGEDPELSQWESKFEEVPEPLTKEERKEWLEKLKG 529 (588)
T ss_pred eeecccccccchhhhcCchhhhhhhhhcccchhhccchhhhcccccccCcchhhhhhhhhhcccccChHHHHHHHHHhcC
Confidence 9999966653 13689
Q ss_pred eEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccCCC
Q 007518 540 AALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHFKH 600 (600)
Q Consensus 540 avlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHFrH 600 (600)
.+|+|||||||+ |.|++|++.||+.|..||||++|+.||++|||+||.|++|..|||+|
T Consensus 530 v~l~SDAFFPF~--Dnv~ra~qsGv~yiaaP~GSv~D~~v~~a~d~~~iv~~~t~lRlFhH 588 (588)
T KOG2555|consen 530 VSLSSDAFFPFP--DNVYRAVQSGVKYIAAPSGSVMDKVVIDACDEFGIVLAETNLRLFHH 588 (588)
T ss_pred ceecccccccCc--hHHHHHHhcCCeEEecCCCcchhHHHHHHHHhhCeEEEecchhhhcC
Confidence 999999999999 99999999999999999999999999999999999999999999999
No 6
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=100.00 E-value=4.3e-125 Score=967.82 Aligned_cols=311 Identities=54% Similarity=0.838 Sum_probs=278.8
Q ss_pred HHHCCCCEEEEeCCCCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccc
Q 007518 208 AAKNHKDVLVVVGSEDYPALLEFLKG-NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSS 286 (600)
Q Consensus 208 AAKN~~~V~Vv~dP~DY~~vl~eL~~-G~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~ 286 (600)
|||||++|+|||||+||+.|+++|+. |++|+++|++||.|||+|||+||++|++||+++... +.||+.++++|++.|+
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~~G~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~-~~~p~~~~~~~~~~~~ 79 (315)
T PF01808_consen 1 AAKNYKDVTVVVDPADYDEVLEELKSNGEISLETRRRLAAKAFAHTAAYDAAIANYLSEQFGA-EEFPETLTLSLKKVQD 79 (315)
T ss_dssp HHHTTTT-EEE-SGGGHHHHHHHHHTTTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--TTS-SEEEEEEEEEEE
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccchhhhchhhhHhhc
Confidence 89999999999999999999999997 999999999999999999999999999999987652 2599999999999999
Q ss_pred cccCCCcccccccccccchhhhccCCccccccccCCCCCCchhhcHHHHHHHHHhcC-CCeEEEEccCCcccccccCCHH
Q 007518 287 LRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFK-NPTCVIVKHTNPCGVASRDDIL 365 (600)
Q Consensus 287 LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~-~pa~vivKH~nPCGvA~~~~l~ 365 (600)
|||||||||+|+||..+.. ...++..++||||||||||||+|+|+||++|+||+ +|+||||||+||||||+|+|+.
T Consensus 80 LRYGENPHQ~Aa~Y~~~~~---~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~~pa~vivKH~nPCGvA~~~~~~ 156 (315)
T PF01808_consen 80 LRYGENPHQKAAFYREPSE---EEGGLAPAEQLQGKELSYNNLLDADAAWRLVREFDDEPACVIVKHNNPCGVAIGDTLL 156 (315)
T ss_dssp ESSSSSTTS-EEEEECTTS---SSE-GHSEEEEESS---HHHHHHHHHHHHHHHCCCHSCEEEEEETTEEEEEEEESHHH
T ss_pred cccCCCCCchhhheecCCc---ccccccchHHhcCcCcccCCchhHHHHHHHHHHcCCCCeEEEEecCccceeEecCCHH
Confidence 9999999999999976521 12368999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecCCC
Q 007518 366 EAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNK 445 (600)
Q Consensus 366 eAy~~A~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~~ 445 (600)
|||++||+|||+|||||||||||+||++||++|+++ |+||||||+|++|||+||++| ||||||+++...
T Consensus 157 eAy~~A~~~Dp~SaFGGIva~N~~vD~~~A~~i~~~----------F~EviiAP~f~~eAleiL~~K-KnlRll~~~~~~ 225 (315)
T PF01808_consen 157 EAYEKAFACDPVSAFGGIVAFNRPVDEETAEEISEI----------FLEVIIAPDFTPEALEILKKK-KNLRLLKLPDPP 225 (315)
T ss_dssp HHHHHHHHSTTTTTTTEEEEESSEB-HHHHHHHCTS-----------EEEEEESEB-HHHHHHHHCT-CCGEEEEEEEST
T ss_pred HHHHHHHHhCcccccCCEEEEcCccCHHHHHHHHhc----------eEEEEEeCCCCHHHHHHHHhc-CCeEEEEecccc
Confidence 999999999999999999999999999999999999 999999999999999999999 999999997543
Q ss_pred C--CCceEEEEceeEEEecCCCCCCCcccceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHH
Q 007518 446 K--GKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRR 523 (600)
Q Consensus 446 ~--~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRV 523 (600)
. +.+++|+|.||+|+|++|...+++.+|+|||+++||++||+||+|||+||||||||||||+||++|||||+||||||
T Consensus 226 ~~~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~sRV 305 (315)
T PF01808_consen 226 NSKPELEFRSVDGGLLVQDRDNALIDPDDWKVVTKRQPTEEELEDLLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMSRV 305 (315)
T ss_dssp TC--SEEEEEETTEEEEEE--SGGCSGGGGEEESSS---HHHHHHHHHHHHHHHCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred cCCCCeEEEEEeccEEEEcCCCCCCCHHHCeEecCCCCCHHHHHHHHHHHHHHhhcccceEEEEeCCeEEEeCCCCcchH
Confidence 2 37999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 007518 524 ESLRIAMKKA 533 (600)
Q Consensus 524 ds~~iA~~kA 533 (600)
||+|||++||
T Consensus 306 da~~iA~~KA 315 (315)
T PF01808_consen 306 DAARIAIEKA 315 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhC
Confidence 9999999997
No 7
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=100.00 E-value=2.2e-124 Score=960.26 Aligned_cols=309 Identities=55% Similarity=0.825 Sum_probs=292.3
Q ss_pred HHHCCCCEEEEeCCCCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhcccCCCCCceeeccccccc
Q 007518 208 AAKNHKDVLVVVGSEDYPALLEFLKG-NQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIAEEDKFPPSFTVPLELKSS 286 (600)
Q Consensus 208 AAKN~~~V~Vv~dP~DY~~vl~eL~~-G~~s~~~R~~LA~kAF~~TA~YD~aIa~yl~~~~~~~~~~p~~~~~~~~~~~~ 286 (600)
|||||++|+|||||+||+.++++|+. |.+|+++|++||.|||+|||.||++|++||+++.++ .||+.+++.+++.|+
T Consensus 1 AAKN~~~V~Vv~dP~dY~~vl~el~~~g~~s~~~R~~LA~kAF~~Ta~YD~aIa~yl~~~~~~--~~p~~~~~~~~k~~~ 78 (311)
T smart00798 1 AAKNHKDVTVVVDPADYAEVLEELKAGGGLSLETRKRLAAKAFAHTAAYDAAISNYLAKQLAS--EFPETLTLSFEKKQD 78 (311)
T ss_pred CCCCCCCeEEECCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cCchhhhhcceecCc
Confidence 79999999999999999999999987 999999999999999999999999999999865332 499999999999999
Q ss_pred cccCCCcccccccccccchhhhccCCccccccccCCCCCCchhhcHHHHHHHHHhcCCCeEEEEccCCcccccccCCHHH
Q 007518 287 LRYGENPHQKAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILE 366 (600)
Q Consensus 287 LRYGENPHQ~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~l~e 366 (600)
|||||||||+|+||.++. ..+++.+++||||||||||||+|+|+||+||+||++|+||||||+||||+|+|+|+.|
T Consensus 79 LRYGENPHQ~Aa~Y~~~~----~~~~~~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~~~~~ 154 (311)
T smart00798 79 LRYGENPHQKAAFYTDPD----ALGGIATAKQLQGKELSYNNILDADAALELVKEFDEPACVIVKHANPCGVAVGDTLAE 154 (311)
T ss_pred cCCCCCcCcceeEEeccC----cccccccchhhcCcccCCcchhchHHHHHHHHhcCCCcEEEEecCCcceeecCCCHHH
Confidence 999999999999997542 1235788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHHhhccCCceEEEecCCC-
Q 007518 367 AYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEILRGKSKNLRILETKKNK- 445 (600)
Q Consensus 367 Ay~~A~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~~- 445 (600)
||++||+|||+|||||||||||+||++||++|+++ |+||||||+|++|||+||++| ||||||+++...
T Consensus 155 Ay~kA~~~Dp~SaFGGIva~Nr~vd~~~A~~i~~~----------F~EviiAP~f~~eAleiL~~K-KnlRll~~~~~~~ 223 (311)
T smart00798 155 AYRKAYAADPVSAFGGIIAFNRPVDEETAEAINKI----------FLEVIIAPDFDEEALEILSKK-KNLRLLELGPLPD 223 (311)
T ss_pred HHHHHHhcCCccccCCEEEECCccCHHHHHHHHhh----------eEEEEEcCCCCHHHHHHHhhC-CCEEEEEeCCCCC
Confidence 99999999999999999999999999999999999 999999999999999999999 999999996332
Q ss_pred CCCceEEEEceeEEEecCCCCCCCcccceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHH
Q 007518 446 KGKLSLRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRES 525 (600)
Q Consensus 446 ~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds 525 (600)
...+++|+|.||+|+|++|...+++.+|++||+++||++||+||+||||||||||||||||+||++|||||+||||||||
T Consensus 224 ~~~~~~r~v~GG~LvQ~~D~~~~~~~~~~vvt~~~pt~~e~~dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVda 303 (311)
T smart00798 224 PDGLEFKSVSGGLLVQDRDNGGIDPEDLKVVTKRQPTEEELKDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDS 303 (311)
T ss_pred CCceEEEEEeeEEEEECCCCCCCCHHHCEecCCCCCCHHHHHHhHHHHHHHhhcccceEEEEeCCeEEEecCCCccHHHH
Confidence 34689999999999999999877778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHc
Q 007518 526 LRIAMKKA 533 (600)
Q Consensus 526 ~~iA~~kA 533 (600)
+|+|++||
T Consensus 304 ~~iA~~kA 311 (311)
T smart00798 304 ARIAAEKA 311 (311)
T ss_pred HHHHHhhC
Confidence 99999986
No 8
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=100.00 E-value=3.6e-123 Score=966.63 Aligned_cols=295 Identities=36% Similarity=0.578 Sum_probs=281.1
Q ss_pred ccccccCCCccc-ccccccccchhhhccCCccccccccCCCCCCchhhcHHHHHHHHHhcC----CCeEEEEccCCcccc
Q 007518 284 KSSLRYGENPHQ-KAAFYVDKSLAEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFK----NPTCVIVKHTNPCGV 358 (600)
Q Consensus 284 ~~~LRYGENPHQ-~Aa~Y~~~~~~~~~~~~~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~----~pa~vivKH~nPCGv 358 (600)
+++||||||||| +|+||... ++.+++||||| ||||||+|+|+||+||+||+ +|+||||||+||||+
T Consensus 3 ~~~LRYGeNPHQk~Aa~y~~~--------~~~~~~~L~Gk-lSynNilDad~A~~lv~ef~~~~~~paavivKH~nPCG~ 73 (390)
T PRK07106 3 ELELKYGCNPNQKPARIFMKE--------GELPIEVLNGR-PGYINFLDALNSWQLVKELKEATGLPAAASFKHVSPAGA 73 (390)
T ss_pred CCCccCCCCcCcccceeeecC--------CccCceEecCc-CCcchHHHHHHHHHHHHHhhhccCCCcEEeeeccCccee
Confidence 578999999999 69999642 46789999999 99999999999999999998 699999999999999
Q ss_pred cccCC------------------HHHHHHHHHhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCC
Q 007518 359 ASRDD------------------ILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPS 420 (600)
Q Consensus 359 A~~~~------------------l~eAy~~A~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~ 420 (600)
|++++ +.+||++||+|||+|+||||||+|++||++||++|++. |+||||||+
T Consensus 74 A~~~~l~~~~~~~~~~~~~~~~~~~~Ay~rA~~~Dp~SaFGgivA~N~~vD~~tA~~i~~~----------f~EvIIAP~ 143 (390)
T PRK07106 74 AVGLPLSDTLKKIYFVDDMELSPLACAYARARGADRMSSYGDFAALSDVCDVETAKLLKRE----------VSDGIIAPG 143 (390)
T ss_pred eecCCcchhhhheeecccccccHHHHHHHHHHhcCCccccCCEEEECCccCHHHHHHHHhh----------EEEEEEcCC
Confidence 99998 99999999999999999999999999999999999999 999999999
Q ss_pred CCHHHHHHHhhccC--CceEEEecCCC-CCCceEEEEceeEEEecCCCCCCCcccc-eeecC-CCCCHHHHHHHHHHHHH
Q 007518 421 YTEEGLEILRGKSK--NLRILETKKNK-KGKLSLRQVGGGWLAQDSDDLTPEDIQF-KVVSE-KKPQESELHDAEFAWLC 495 (600)
Q Consensus 421 f~~eAleiL~~K~K--nlRlL~~~~~~-~~~~~~r~v~GG~LvQ~~D~~~~~~~~~-~vVT~-~~Pt~~e~~dL~FAwkv 495 (600)
|++||||||++| | |+|||+++... +..+++|+|.||+|+|++|...++.+.| ++||+ ++||++|++||+|||+|
T Consensus 144 f~~eALeiL~~K-Kn~nlriL~~~~~~~~~~~e~r~v~Gg~L~Q~~d~~~~~~~~~~~vVT~~~~pt~~e~~DL~fAw~v 222 (390)
T PRK07106 144 YTPEALEILKAK-KKGNYNIIKIDPNYEPAPIETKDVFGITFEQGRNELKIDEDLLKNIVTENKELPDEAKRDLIIALIT 222 (390)
T ss_pred CCHHHHHHHHhC-cCCceEEEEcCCCCCCCceEEEEEeeEEEEECCCCCCCCHHHhhcccCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999 8 69999996433 4578999999999999999988877889 99998 99999999999999999
Q ss_pred HhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCC----------------------------------------
Q 007518 496 VKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGD---------------------------------------- 535 (600)
Q Consensus 496 vKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~---------------------------------------- 535 (600)
|||||||||||+|||+|||||+||||||||+|+|++||+.
T Consensus 223 vK~vkSNaIv~akdg~tvGIGaGQ~SRVd~~rlA~~KA~~~~lr~hp~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~ 302 (390)
T PRK07106 223 LKYTQSNSVCYAKDGQAIGIGAGQQSRIHCTRLAGNKADIWYLRQHPKVLNLPFKEGIRRPDRDNAIDVYLSDDYMDVLA 302 (390)
T ss_pred HHhcccceEEEEeCCeEEEeCCCCcchHHHHHHHHHHhcchhhhccchhhcccccccccccccccchhhhhccchhchhh
Confidence 9999999999999999999999999999999999999971
Q ss_pred -------------------------ccCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEE
Q 007518 536 -------------------------EVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVAL 590 (600)
Q Consensus 536 -------------------------~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaM 590 (600)
+++|+||||||||||+ |+||.|+++||++||||||||||+|||++||||||+|
T Consensus 303 ~~~~~~~f~~~p~~lt~~er~~~~~~l~G~vlASDAFFPF~--D~Id~Aa~~GV~aIiQPGGSiRD~evI~aane~giaM 380 (390)
T PRK07106 303 DGVWQQFFTEKPEPLTREEKRAWLATLTGVALGSDAFFPFG--DNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGMTM 380 (390)
T ss_pred hhhhhhhcccCcccccHHHHHHHhhhcCCeEEEecccCCCC--chHHHHHHcCCEEEECCCCCCCcHHHHHHHHHhCCEE
Confidence 5799999999999999 9999999999999999999999999999999999999
Q ss_pred EecCCccCCC
Q 007518 591 LLTSVRHFKH 600 (600)
Q Consensus 591 vfTg~RHFrH 600 (600)
||||+|||||
T Consensus 381 vfTg~RhF~H 390 (390)
T PRK07106 381 AFTGVRLFHH 390 (390)
T ss_pred EECCCCCCCC
Confidence 9999999999
No 9
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=100.00 E-value=3.9e-83 Score=616.65 Aligned_cols=186 Identities=58% Similarity=0.889 Sum_probs=183.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+||||||+||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++||||||||||||||||+||||||+||++++
T Consensus 1 ~~vLISVsDK~~l~~lAk~L~~lGf~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~~ 80 (187)
T cd01421 1 KRALISVSDKTGLVEFAKELVELGVEILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEE 80 (187)
T ss_pred CEEEEEEeCcccHHHHHHHHHHCCCEEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCChh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhC-C
Q 007518 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKG-N 234 (600)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~-G 234 (600)
|+ +|++|||++|||||||||||++|++++ +++++++|||||||||||||||||||++|+|||||+||+.++++|+. |
T Consensus 81 ~~-~~~~~~i~~idlVvvNlYpF~~~~~~~-~~~~~~~iEnIDIGGpsmlRaAAKN~~~V~vv~dp~dY~~v~~~l~~~g 158 (187)
T cd01421 81 HK-DLEEHGIEPIDLVVVNLYPFEETVAKG-NVTLEEAIENIDIGGPSLLRAAAKNYKDVTVLVDPADYQKVLEELKSNG 158 (187)
T ss_pred HH-HHHHcCCCCeeEEEEcccChHHHhccC-CCCHHHHHHhccCCcHHHHHHHHhcCCCeEEEcCHHHHHHHHHHHHhcC
Confidence 99 999999999999999999999999987 89999999999999999999999999999999999999999999987 9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007518 235 QDDQQFRRKLAWKAFQHVASYDSAVSEWL 263 (600)
Q Consensus 235 ~~s~~~R~~LA~kAF~~TA~YD~aIa~yl 263 (600)
.+|+++|++||.|||+|||+||++|++||
T Consensus 159 ~~~~~~R~~lA~kAF~~ta~YD~~I~~~~ 187 (187)
T cd01421 159 SISEETRRRLALKAFAHTAEYDAAISNYL 187 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999997
No 10
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=99.67 E-value=3.1e-17 Score=141.72 Aligned_cols=95 Identities=34% Similarity=0.479 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHHHcCCC
Q 007518 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIG 166 (600)
Q Consensus 87 glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~~~I~ 166 (600)
+++++|+.|.++||+|+||+||+++|+++||+|..|.+++++||.++||+ ++++.+++ +
T Consensus 1 e~~~~a~~l~~lG~~i~AT~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~------------------~i~~~i~~---~ 59 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEIYATEGTAKFLKEHGIEVTEVVNKIGEGESPDGRV------------------QIMDLIKN---G 59 (95)
T ss_dssp THHHHHHHHHHTTSEEEEEHHHHHHHHHTT--EEECCEEHSTG-GGTHCH------------------HHHHHHHT---T
T ss_pred CHHHHHHHHHHCCCEEEEChHHHHHHHHcCCCceeeeeecccCccCCchh------------------HHHHHHHc---C
Confidence 58999999999999999999999999999999999999999999999999 55555555 4
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHH
Q 007518 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPA 203 (600)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGps 203 (600)
.|||||+++||+....... +..+..+..++||+++|
T Consensus 60 ~IdlVIn~~~~~~~~~~~d-g~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 60 KIDLVINTPYPFSDQEHTD-GYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp SEEEEEEE--THHHHHTHH-HHHHHHHHHHTTSHEEC
T ss_pred CeEEEEEeCCCCcccccCC-cHHHHHHHHHcCCCCcC
Confidence 7899999999999987621 56677777778887654
No 11
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=99.49 E-value=3.8e-14 Score=121.12 Aligned_cols=90 Identities=46% Similarity=0.712 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHHHcCCC
Q 007518 87 DLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGIG 166 (600)
Q Consensus 87 glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~~~I~ 166 (600)
+++++++.|.++||+|+||+||+++|+++||+| ||+|++|++|+. ..++....+
T Consensus 1 ~~~~~~~~l~~lG~~i~AT~gTa~~L~~~Gi~~-----------------~~~~~ki~~~~~---------~i~~~i~~g 54 (90)
T smart00851 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPV-----------------KTLHPKVHGGIL---------AILDLIKNG 54 (90)
T ss_pred CHHHHHHHHHHCCCEEEEccHHHHHHHHCCCcc-----------------eeccCCCCCCCH---------HHHHHhcCC
Confidence 478999999999999999999999999999975 889999999863 246667789
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHH
Q 007518 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPA 203 (600)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGps 203 (600)
.||+||++.|||.+...+. +..+..+..++||+++|
T Consensus 55 ~id~VIn~~~~~~~~~~~d-~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 55 EIDLVINTLYPLGAQPHED-GKALRRAAENIDIPGAT 90 (90)
T ss_pred CeEEEEECCCcCcceeccC-cHHHHHHHHHcCCCeeC
Confidence 9999999999987654432 45556666666666543
No 12
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=99.47 E-value=1.2e-13 Score=123.03 Aligned_cols=107 Identities=29% Similarity=0.398 Sum_probs=88.8
Q ss_pred EEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 78 ALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 78 ALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+|||++ ||..++++|+.|.++||+|+||+||+++|+++||+|+.|.++.+ + -||.|+..|..+
T Consensus 2 i~isv~d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~~~Gi~~~~v~~~~~-----~-----g~~~i~~~i~~~----- 66 (112)
T cd00532 2 VFLSVSDHVKAMLVDLAPKLSSDGFPLFATGGTSRVLADAGIPVRAVSKRHE-----D-----GEPTVDAAIAEK----- 66 (112)
T ss_pred EEEEEEcccHHHHHHHHHHHHHCCCEEEECcHHHHHHHHcCCceEEEEecCC-----C-----CCcHHHHHHhCC-----
Confidence 799999 79999999999999999999999999999999999999999853 1 357776666543
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHH
Q 007518 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYP 225 (600)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~ 225 (600)
+.||+||...+|... .+.+..|..|.|+|.+| +|.++|+++-+.
T Consensus 67 ----------g~idlVIn~~~~~~~--------------~~~~~dg~~iRR~A~~~--~Ip~~T~~~ta~ 110 (112)
T cd00532 67 ----------GKFDVVINLRDPRRD--------------RCTDEDGTALLRLARLY--KIPVTTPNATAM 110 (112)
T ss_pred ----------CCEEEEEEcCCCCcc--------------cccCCChHHHHHHHHHc--CCCEEECHHHHh
Confidence 569999988766642 12456799999999998 999999886543
No 13
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=99.03 E-value=9.5e-10 Score=98.00 Aligned_cols=52 Identities=35% Similarity=0.412 Sum_probs=49.4
Q ss_pred EEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCC
Q 007518 77 QALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCF 128 (600)
Q Consensus 77 rALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGf 128 (600)
.+|+|+. ||+.++++++.|.++||+|+||+||+++|+++|++|+.|++++++
T Consensus 2 ~vlisv~~~dk~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~ 55 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEE 55 (116)
T ss_pred cEEEecCcccchhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCC
Confidence 5899998 699999999999999999999999999999999999999998876
No 14
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=98.85 E-value=3e-09 Score=93.87 Aligned_cols=51 Identities=35% Similarity=0.596 Sum_probs=47.7
Q ss_pred cEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccC
Q 007518 76 KQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLT 126 (600)
Q Consensus 76 ~rALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiT 126 (600)
+.+|+|++ ||..++++++.|.++||+|+||+||+++|+++|++|+.|.++.
T Consensus 1 g~vl~s~~~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~ 53 (110)
T cd01424 1 GTVFISVADRDKPEAVEIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVS 53 (110)
T ss_pred CeEEEEEEcCcHhHHHHHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecC
Confidence 36899999 6889999999999999999999999999999999999999874
No 15
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=98.78 E-value=1.6e-08 Score=94.96 Aligned_cols=117 Identities=25% Similarity=0.306 Sum_probs=82.3
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHc--CcEEEEechhHHHHHHC-CCeeEEecccCCCCCCCCCcccccccccccccc
Q 007518 74 ANKQALISLS--DKKDLASLGIGLQEL--GYTIVSTGGTATSLENA-GVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGIL 148 (600)
Q Consensus 74 ~i~rALISVs--DK~glv~~Ak~L~~l--GfeIiATgGTAk~L~e~-GI~v~~VskiTGfPEildGRVKTLHPkIhGGIL 148 (600)
..+++||||+ ||..++++++.|.++ ||+|+||+||+++|+++ ||+|+.| +. +-++|+ |.|
T Consensus 3 ~~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~l~AT~gTa~~L~~~~Gi~v~~v--i~---~~~gg~-----~~i----- 67 (142)
T PRK05234 3 ARKRIALIAHDHKKDDLVAWVKAHKDLLEQHELYATGTTGGLIQEATGLDVTRL--LS---GPLGGD-----QQI----- 67 (142)
T ss_pred cCcEEEEEEeccchHHHHHHHHHHHHHhcCCEEEEeChHHHHHHhccCCeeEEE--Ec---CCCCCc-----hhH-----
Confidence 4568999999 699999999999999 99999999999999999 9999988 32 222443 222
Q ss_pred cCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHH
Q 007518 149 ARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALL 228 (600)
Q Consensus 149 arr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl 228 (600)
.++-.. +.||+||.---|... . . -.-.|-.|-|+|.+ .+|-++++.+-=..++
T Consensus 68 ---------~~~I~~--g~i~lVInt~dp~~~---~--~---------~~~D~~~IRR~Av~--~~IP~~T~l~tA~a~~ 120 (142)
T PRK05234 68 ---------GALIAE--GKIDMLIFFRDPLTA---Q--P---------HDPDVKALLRLADV--WNIPVATNRATADFLI 120 (142)
T ss_pred ---------HHHHHc--CceeEEEEecCCCCC---C--c---------ccchHHHHHHHHHH--cCCCEEcCHHHHHHHH
Confidence 222222 478998654333311 0 0 01135677777777 4588899988777777
Q ss_pred HHHh
Q 007518 229 EFLK 232 (600)
Q Consensus 229 ~eL~ 232 (600)
+.|.
T Consensus 121 ~al~ 124 (142)
T PRK05234 121 SSLL 124 (142)
T ss_pred HHHh
Confidence 7764
No 16
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.63 E-value=8.5e-08 Score=113.73 Aligned_cols=113 Identities=28% Similarity=0.416 Sum_probs=85.9
Q ss_pred CcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCC
Q 007518 75 NKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRD 152 (600)
Q Consensus 75 i~rALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~ 152 (600)
.+++||||+ ||++++++|+.|.++||+|+||+||+++|+++||+|+.|+++.. | +|.|
T Consensus 937 ~~~~lisv~~~dK~~l~~~a~~l~~~G~~i~aT~gT~~~l~~~gi~~~~v~~~~~------~-----~~~i--------- 996 (1066)
T PRK05294 937 SGTVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELVNKVHE------G-----RPHI--------- 996 (1066)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHHcCCEEEEccHHHHHHHHCCCeeEEEeeccC------c-----CccH---------
Confidence 368999999 89999999999999999999999999999999999999999741 1 2322
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHh
Q 007518 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLK 232 (600)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~ 232 (600)
++.+++ +.||+||..... .+ -.-.|-.+=|+|..| .|-++|+.+--..+++.|+
T Consensus 997 ----~~~i~~---~~idlvIn~~~~-----~~------------~~~~g~~iRr~Av~~--~ip~~T~~~~a~~~v~al~ 1050 (1066)
T PRK05294 997 ----VDLIKN---GEIDLVINTPTG-----RQ------------AIRDGFSIRRAALEY--KVPYITTLAGARAAVKAIE 1050 (1066)
T ss_pred ----HHHHHc---CCeEEEEECCCC-----cc------------cccccHHHHHHHHHc--CCCEEecHHHHHHHHHHHH
Confidence 122222 468998766331 11 012477788888884 6777899998888888885
Q ss_pred C
Q 007518 233 G 233 (600)
Q Consensus 233 ~ 233 (600)
.
T Consensus 1051 ~ 1051 (1066)
T PRK05294 1051 A 1051 (1066)
T ss_pred h
Confidence 3
No 17
>PLN02735 carbamoyl-phosphate synthase
Probab=98.51 E-value=2.3e-07 Score=110.71 Aligned_cols=53 Identities=45% Similarity=0.634 Sum_probs=49.6
Q ss_pred CCcEEEEEecC--cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccC
Q 007518 74 ANKQALISLSD--KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLT 126 (600)
Q Consensus 74 ~i~rALISVsD--K~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiT 126 (600)
..+++||||+| |++++++|+.|.++||+|+||+||+++|+++||+|+.|.++.
T Consensus 971 ~~g~vliSv~d~~K~~~~~~a~~L~~lG~~i~aT~GTa~~L~~~Gi~~~~v~~~~ 1025 (1102)
T PLN02735 971 LSGTVFISLNDLTKPHLVPIARGFLELGFRIVSTSGTAHFLELAGIPVERVLKLH 1025 (1102)
T ss_pred CCCeEEEEEecCCchhHHHHHHHHHHCCCEEEEccHHHHHHHHCCCceEEEeecc
Confidence 34689999996 999999999999999999999999999999999999999874
No 18
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=98.37 E-value=2.9e-07 Score=83.22 Aligned_cols=47 Identities=32% Similarity=0.448 Sum_probs=43.2
Q ss_pred EEEEec-CcccHHHHHHHHHHc--CcEEEEechhHHHHHH-CCCeeEEeccc
Q 007518 78 ALISLS-DKKDLASLGIGLQEL--GYTIVSTGGTATSLEN-AGVSVTKVEQL 125 (600)
Q Consensus 78 ALISVs-DK~glv~~Ak~L~~l--GfeIiATgGTAk~L~e-~GI~v~~Vski 125 (600)
|||+=- ||..++++++.|.++ ||+|+||+||+++|++ +||+|+.| ++
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~AT~gTa~~L~~~~Gi~v~~v-k~ 53 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHRLVATGTTGLLIQEATGLTVNRM-KS 53 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCEEEEechHHHHHHHhhCCcEEEE-ec
Confidence 566544 899999999999999 9999999999999999 99999999 75
No 19
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.25 E-value=2.9e-06 Score=100.88 Aligned_cols=111 Identities=30% Similarity=0.439 Sum_probs=78.3
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCC
Q 007518 74 ANKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (600)
Q Consensus 74 ~i~rALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr 151 (600)
..+.+|+|++ ||..++++|+.|.++||+|+||.||+++|+++||+|+.|.++. +|| |.|
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~l~~~g~~~~at~gta~~l~~~gi~~~~~~~~~------~~~-----~~~-------- 996 (1050)
T TIGR01369 936 KKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELVLKVS------EGR-----PNI-------- 996 (1050)
T ss_pred CCCeEEEEeccCchHHHHHHHHHHHHCCCEEEEechHHHHHHHCCCceEEEeecC------CCC-----ccH--------
Confidence 4467999998 6899999999999999999999999999999999999999875 222 222
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHH
Q 007518 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLE 229 (600)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~ 229 (600)
++.+++ +.|||||.-... .+ . -.-.|-.|=|+|.+ ..|.++|+.+--..+++
T Consensus 997 -----~~~i~~---~~i~lvin~~~~-----~~----~-------~~~~g~~iRr~Ai~--~~ip~~t~~~~a~~~~~ 1048 (1050)
T TIGR01369 997 -----LDLIKN---GEIELVINTTSK-----GA----G-------TATDGYKIRREALD--YGVPLITTLNTAEAFAE 1048 (1050)
T ss_pred -----HHHHHc---CCeEEEEECCCC-----Cc----c-------cccccHHHHHHHHH--cCCCEEecHHHHHHHHh
Confidence 122222 567988654211 11 0 12347777888887 46677777665444443
No 20
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.21 E-value=1.3e-06 Score=104.11 Aligned_cols=113 Identities=23% Similarity=0.323 Sum_probs=79.9
Q ss_pred CCcEEEEEec--CcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCC
Q 007518 74 ANKQALISLS--DKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (600)
Q Consensus 74 ~i~rALISVs--DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr 151 (600)
..+++||||+ ||..++++|+.|.++||+|+||.||+++|+++||+|+.|.++.. || |.|
T Consensus 936 ~~~~~~~~~~~~~k~~~~~~~~~~~~~g~~~~at~gt~~~l~~~gi~~~~v~~~~~------~~-----~~~-------- 996 (1068)
T PRK12815 936 SYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITTGVVEKVQE------GS-----PSL-------- 996 (1068)
T ss_pred CCCeEEEEecccchHHHHHHHHHHHHCCCEEEEccHHHHHHHhCCCeEEEEeeccC------CC-----ccH--------
Confidence 3467999999 68999999999999999999999999999999999999998751 21 222
Q ss_pred CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 007518 152 DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 152 ~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL 231 (600)
-++-++ +.||+|+. + |-. + ... --|-.+=|+|..+ +|-++|+.+--..+++.|
T Consensus 997 ------~~~~~~--~~~~~vin-~-~~~----~--~~~---------~~~~~irr~a~~~--~ip~~t~~~~a~~~~~~~ 1049 (1068)
T PRK12815 997 ------LERIKQ--HRIVLVVN-T-SLS----D--SAS---------EDAIKIRDEALST--HIPVFTELETAQAFLQVL 1049 (1068)
T ss_pred ------HHHHHc--CCeEEEEE-C-CCC----c--ccc---------cccHHHHHHHHHc--CCCEEecHHHHHHHHHHH
Confidence 112222 44788865 3 211 1 100 1255566666664 577778887777777777
Q ss_pred h
Q 007518 232 K 232 (600)
Q Consensus 232 ~ 232 (600)
+
T Consensus 1050 ~ 1050 (1068)
T PRK12815 1050 E 1050 (1068)
T ss_pred H
Confidence 4
No 21
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=97.79 E-value=0.00015 Score=72.89 Aligned_cols=113 Identities=29% Similarity=0.468 Sum_probs=85.3
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhhhcceEE---EEEeCCeEEEecCCCCcHHHHHHHHHHHcCCc---cCceEEee---
Q 007518 474 KVVSEKKPQESELHDAEFAWLCVKHVKSNAI---VIAKNNCMLGMGSGQPNRRESLRIAMKKAGDE---VKGAALAS--- 544 (600)
Q Consensus 474 ~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAI---V~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~---~~GavlAS--- 544 (600)
-+.|.++||++|++|+.|||++++.+-.==| |++++++.|++-+ +.-+--++.++++- -+|.|+.=
T Consensus 84 G~lt~~~p~~~~~~Di~~g~~ia~~lg~lDiGQ~vVV~~g~VlAVEa-----~EGTD~~i~R~~~l~~~~~~~VlvK~~K 158 (214)
T PF06230_consen 84 GVLTGRKPSKEELADIEFGFEIAKALGRLDIGQAVVVKDGRVLAVEA-----IEGTDAMIRRAGELRGKGKGGVLVKVPK 158 (214)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEECCEEEEEec-----cccHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 5778999999999999999999998875443 6889999999987 23445556665542 24677652
Q ss_pred ---cccccCC--ccchHHHHHHCCCeEEe-cCCCCC--CchHHHHHHHhcCcEEE
Q 007518 545 ---DAFFPFA--WKDAVEEACENGIGVIA-EPGGSI--RDGDAIDCCNKYGVALL 591 (600)
Q Consensus 545 ---DAFFPF~--~~D~ve~Aa~aGi~aII-QPGGSi--RD~evI~aa~e~giaMv 591 (600)
|-=|--| +-|+|+.++++|.++|. +.|+++ .-+++|+.||++||..+
T Consensus 159 p~QD~R~DlPtIG~~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 159 PGQDLRFDLPTIGPDTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIV 213 (214)
T ss_pred CCCcccccccccCHHHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEe
Confidence 3333333 67899999999999985 555553 45699999999999875
No 22
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=91.77 E-value=0.19 Score=48.21 Aligned_cols=133 Identities=21% Similarity=0.351 Sum_probs=75.6
Q ss_pred ecCcccHHHHHHHH-HHcCcEE-EEechhHHHHHHC-CCeeEEecccCCCCCCCCC--cccccccccccccccCCCCHHh
Q 007518 82 LSDKKDLASLGIGL-QELGYTI-VSTGGTATSLENA-GVSVTKVEQLTCFPEMLDG--RVKTLHPNIHGGILARRDQKHH 156 (600)
Q Consensus 82 VsDK~glv~~Ak~L-~~lGfeI-iATgGTAk~L~e~-GI~v~~VskiTGfPEildG--RVKTLHPkIhGGILarr~~~~h 156 (600)
..+=+..++.|+.| ...|+++ +|.|||+.+|+++ ++||..|. +|++ ++|.. +.|..+++| |++.-++.-..
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~-~s~~-Dil~al~~a~~~~~~I--avv~~~~~~~~ 91 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIP-ISGF-DILRALAKAKKYGPKI--AVVGYPNIIPG 91 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE----HH-HHHHHHHHCCCCTSEE--EEEEESS-SCC
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEEC-CCHh-HHHHHHHHHHhcCCcE--EEEecccccHH
Confidence 33557788999999 8899986 5669999999998 79888875 3554 55443 335556666 66666544444
Q ss_pred HHHHHH-cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhc-----cc--cchHHHHHHHHHCCCCEEEEeCCCCHHHHH
Q 007518 157 MDALSE-HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN-----ID--IGGPAMIRAAAKNHKDVLVVVGSEDYPALL 228 (600)
Q Consensus 157 ~~~l~~-~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEn-----ID--IGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl 228 (600)
+..+.+ +|+ ++....+.--+ +.+++|++ +| |||....+.|.|..-. .|+..+ .++.+.
T Consensus 92 ~~~~~~ll~~---~i~~~~~~~~~---------e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~-~v~i~s-g~esi~ 157 (176)
T PF06506_consen 92 LESIEELLGV---DIKIYPYDSEE---------EIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLP-GVLIES-GEESIR 157 (176)
T ss_dssp HHHHHHHHT----EEEEEEESSHH---------HHHHHHHHHHHTT--EEEESHHHHHHHHHTTSE-EEESS---HHHHH
T ss_pred HHHHHHHhCC---ceEEEEECCHH---------HHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCc-EEEEEe-cHHHHH
Confidence 555543 344 44433332222 22333333 34 7999988888774444 344444 456777
Q ss_pred HHHh
Q 007518 229 EFLK 232 (600)
Q Consensus 229 ~eL~ 232 (600)
..|.
T Consensus 158 ~Al~ 161 (176)
T PF06506_consen 158 RALE 161 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 23
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=90.31 E-value=0.2 Score=44.12 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=36.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccC
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHF 598 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHF 598 (600)
|.+..|..+|+.+||=.||.-=++++++.|+++||+++.|..--|
T Consensus 52 di~~~a~~~~i~~iIltg~~~~~~~v~~la~~~~i~vi~t~~dtf 96 (105)
T PF07085_consen 52 DIQLAAIEAGIACIILTGGLEPSEEVLELAKELGIPVISTPYDTF 96 (105)
T ss_dssp HHHHHHCCTTECEEEEETT----HHHHHHHHHHT-EEEE-SS-HH
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 999999999999999999999999999999999999999987554
No 24
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.71 E-value=3.1 Score=43.83 Aligned_cols=117 Identities=20% Similarity=0.352 Sum_probs=79.8
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHhhhcceEE---EEEeCCeEEEecC--CCCcHHHHHHHHHHHcCC-ccCceEEeecc-
Q 007518 474 KVVSEKKPQESELHDAEFAWLCVKHVKSNAI---VIAKNNCMLGMGS--GQPNRRESLRIAMKKAGD-EVKGAALASDA- 546 (600)
Q Consensus 474 ~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAI---V~ak~~~tvGiGa--GQ~sRVds~~iA~~kA~~-~~~GavlASDA- 546 (600)
.+.|+..|+.++++|...|..++++.-+==| +++++|+.|++=+ |-...+.-+. .+.++|. .-+|.||.==+
T Consensus 141 g~lt~~~P~~~d~~dI~~g~~aA~~lg~lDVGQ~aV~~~g~vvAvEg~EGTd~ml~R~a-~lr~~gr~~rr~gvLvK~aK 219 (279)
T COG3494 141 GPLTKKEPDNEDLRDIELGIEAANALGALDVGQGAVVVGGRVVAVEGAEGTDAMLRRVA-DLRKAGRAERRGGVLVKMAK 219 (279)
T ss_pred CcccCCCCChhhHHHHHHHHHHHHHhccccccceeEEeCCeEEEEeeccchHHHHHHHH-HHhhcccccccCCEEEEccC
Confidence 6889999999999999999999999865433 5789999999854 2222222111 1222221 12566665321
Q ss_pred -------cccCCccchHHHHHHCCCeEEecCCCC---CCchHHHHHHHhcCcEEE
Q 007518 547 -------FFPFAWKDAVEEACENGIGVIAEPGGS---IRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 547 -------FFPF~~~D~ve~Aa~aGi~aIIQPGGS---iRD~evI~aa~e~giaMv 591 (600)
=.|==+-++|+.|+++|.+.|.---|- +.-++.|++||++||-.+
T Consensus 220 p~QD~R~DlPtIG~~Ti~~a~kaGlaGIaieagr~lile~e~~l~~Ank~giFI~ 274 (279)
T COG3494 220 PQQDERADLPTIGPNTIENAAKAGLAGIAIEAGRVLILEREATLKLANKLGIFIV 274 (279)
T ss_pred CCccccccCCccCHHHHHHHHHcCccceeeecCcEEEeccHHHHHhHhhCCeEEE
Confidence 123225589999999999998655554 245689999999998654
No 25
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=89.47 E-value=0.33 Score=58.17 Aligned_cols=40 Identities=35% Similarity=0.451 Sum_probs=37.8
Q ss_pred cEEEEEec-CcccHHHHHHHHHHcCcEEEEechhHHHHHHC
Q 007518 76 KQALISLS-DKKDLASLGIGLQELGYTIVSTGGTATSLENA 115 (600)
Q Consensus 76 ~rALISVs-DK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~ 115 (600)
+..|||+. +|..++..++.|.++||+|++|.||++++.++
T Consensus 1298 ~~i~i~ig~~k~ell~~~~~l~~~gy~lyat~~t~d~~~~~ 1338 (1435)
T KOG0370|consen 1298 KNILISIGSYKPELLPSARDLAKLGYKLYATNGTADFYLEN 1338 (1435)
T ss_pred CCeEEEeccchHHHHHHHHHHHhcCceeEEeccchhhhhcc
Confidence 56899987 89999999999999999999999999999998
No 26
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=82.80 E-value=9.3 Score=36.77 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=67.8
Q ss_pred cceEEEEEeCCeEEEecCCCCc--------------------HHHHHHHHHHHcC---CccCceEEeecccccCCccchH
Q 007518 500 KSNAIVIAKNNCMLGMGSGQPN--------------------RRESLRIAMKKAG---DEVKGAALASDAFFPFAWKDAV 556 (600)
Q Consensus 500 KSNAIV~ak~~~tvGiGaGQ~s--------------------RVds~~iA~~kA~---~~~~GavlASDAFFPF~~~D~v 556 (600)
+-=|+ +++|++.||.|--++- .+.|--.|+.+|. .++.|+.|-. -++|=+ -+.
T Consensus 26 ~VGAV-IV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~~~l~g~tlYv-T~ePC~--~Ca 101 (151)
T TIGR02571 26 SVGAT-IVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFGVSTEGAEIYV-THFPCL--QCT 101 (151)
T ss_pred CEEEE-EEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcCCCcCCcEEEE-eCCCcH--HHH
Confidence 33464 5699999999866642 2566667888773 3567877655 388999 999
Q ss_pred HHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 557 EEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 557 e~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
....++||+.|+=+..--.|...++.-.+.||....-.
T Consensus 102 ~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~ 139 (151)
T TIGR02571 102 KSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVP 139 (151)
T ss_pred HHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeC
Confidence 99999999999986543334578999999999887554
No 27
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=82.76 E-value=1.5 Score=44.08 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=32.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|++.|+-||- |.||+++|+++||+.+
T Consensus 71 ~~a~~a~~aGA~FivsP~~---~~~v~~~~~~~~i~~i 105 (204)
T TIGR01182 71 EQLRQAVDAGAQFIVSPGL---TPELAKHAQDHGIPII 105 (204)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCcEE
Confidence 6789999999999999974 8999999999999875
No 28
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=79.18 E-value=14 Score=35.91 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhcce---EEEEEeCCeEEEecC----CCCcHHHHHHHHHHHcCCccCceEEee-----cccccCCccch
Q 007518 488 DAEFAWLCVKHVKSN---AIVIAKNNCMLGMGS----GQPNRRESLRIAMKKAGDEVKGAALAS-----DAFFPFAWKDA 555 (600)
Q Consensus 488 dL~FAwkvvKhvKSN---AIV~ak~~~tvGiGa----GQ~sRVds~~iA~~kA~~~~~GavlAS-----DAFFPF~~~D~ 555 (600)
.|..||+..=.+..| .-|++|||++||.|. |++ .|-..|+.+||+.++|+.+-. .=|=-=| =+
T Consensus 13 Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~p---HAEv~Al~~ag~~a~Gat~yVTLEPCsH~GrTP--PC 87 (146)
T COG0117 13 ALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGP---HAEVCALRMAGEAARGATAYVTLEPCSHYGRTP--PC 87 (146)
T ss_pred HHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCC---cHHHHHHHHcCcccCCCEEEEEecCcccCCCCc--ch
Confidence 366888888888888 678999999999995 555 677889999998888876432 1111223 56
Q ss_pred HHHHHHCCCeEEe
Q 007518 556 VEEACENGIGVIA 568 (600)
Q Consensus 556 ve~Aa~aGi~aII 568 (600)
.+...++||+.|+
T Consensus 88 ~~ali~agi~rVv 100 (146)
T COG0117 88 ADALIKAGVARVV 100 (146)
T ss_pred HHHHHHhCCCEEE
Confidence 7777777777766
No 29
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=78.05 E-value=2.2 Score=42.74 Aligned_cols=35 Identities=29% Similarity=0.592 Sum_probs=30.0
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|+..|+-|+ =|+||++.|+++||+.+
T Consensus 71 e~a~~a~~aGA~FivSP~---~~~~v~~~~~~~~i~~i 105 (196)
T PF01081_consen 71 EQAEAAIAAGAQFIVSPG---FDPEVIEYAREYGIPYI 105 (196)
T ss_dssp HHHHHHHHHT-SEEEESS-----HHHHHHHHHHTSEEE
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCccc
Confidence 788999999999999996 48999999999999875
No 30
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.34 E-value=2.9 Score=42.07 Aligned_cols=35 Identities=29% Similarity=0.486 Sum_probs=32.0
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|++.|+-|+ =|+|||++|+++||+.+
T Consensus 67 e~a~~ai~aGA~FivSP~---~~~~vi~~a~~~~i~~i 101 (201)
T PRK06015 67 KQFEDAAKAGSRFIVSPG---TTQELLAAANDSDVPLL 101 (201)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence 778999999999999997 38999999999999875
No 31
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=76.64 E-value=12 Score=42.14 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=39.9
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
|.+..|.+.|+.+||=.||.--++++++.|++.|++.+.|..-
T Consensus 192 d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~~~i~ii~t~~d 234 (546)
T PRK14869 192 DIQLAAIEAGVRLLIITGGAPVSEDVLELAKENGVTVISTPYD 234 (546)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHHHhCCCeEEEeccc
Confidence 6777999999999999999999999999999999999999863
No 32
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=76.60 E-value=12 Score=36.71 Aligned_cols=127 Identities=17% Similarity=0.151 Sum_probs=66.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
|++||+-....=-..+|+.|.+.|++++.+.-+...+++.. .++.. .++++..+ .+.=.+++
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~------~~i~~----~~~~~~~~--------~~D~~~~~ 72 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAA------ESLKG----QGLSAHAL--------AFDVTDHD 72 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH------HHHHh----cCceEEEE--------EccCCCHH
Confidence 68999888655557889999999999998876555444311 01100 01222211 11112333
Q ss_pred hHHHHH---HcCCCceeEEEEeccCcHHhhhcCCCCChh---hhhhccccchHHHHHHHHHC-----CCCEEEEeCCC
Q 007518 156 HMDALS---EHGIGTFDLVVVNLYPFYDKVTSAGGIDFE---DGIENIDIGGPAMIRAAAKN-----HKDVLVVVGSE 222 (600)
Q Consensus 156 h~~~l~---~~~I~~IDlVVVNLYPFe~tv~~~~~~~~e---e~IEnIDIGGpsmiRAAAKN-----~~~V~Vv~dP~ 222 (600)
.++++- .....++|.||.|-..+...-.. ..+.+ +.++.-=.|=.-+++++.+. ..+++.+++..
T Consensus 73 ~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (255)
T PRK07523 73 AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLE--DFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ 148 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCChh--hCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence 333322 22457899999998654211111 12222 22222223445677777753 45566666543
No 33
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=75.94 E-value=3.4 Score=41.68 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|+..|+-||- |+||+++|+++||+.+
T Consensus 79 ~~~~~a~~aGA~FivsP~~---~~~v~~~~~~~~i~~i 113 (213)
T PRK06552 79 VTARLAILAGAQFIVSPSF---NRETAKICNLYQIPYL 113 (213)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEE
Confidence 6788999999999999975 7999999999999876
No 34
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=74.70 E-value=1 Score=41.29 Aligned_cols=67 Identities=21% Similarity=0.329 Sum_probs=39.6
Q ss_pred HHHHhcCCCeEEEEccCCcccccccCCHHHHHHHHHhcCC--CCcCCCEEEEccccCHHHHHHHh-cccCCC
Q 007518 337 NCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADP--VSAFGGIVAFNVEVDEALAKELR-EYRSPT 405 (600)
Q Consensus 337 ~lv~ef~~pa~vivKH~nPCGvA~~~~l~eAy~~A~~~Dp--vSaFGGIVA~Nr~vD~~tA~~i~-~~~~~~ 405 (600)
+++.+=.++.++|+||.+-||+... ....|++-++..| +..+==.|-=+|+|.-+.|+.+. .+-||+
T Consensus 12 ~i~~~S~~~~~~iFKHSt~C~IS~~--a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 12 EILEESKEKPVLIFKHSTRCPISAM--ALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp HHHHH---SEEEEEEE-TT-HHHHH--HHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred HHHHhcccCcEEEEEeCCCChhhHH--HHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 3334433677999999999999843 5677777777766 33222222337889899999876 666777
No 35
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=74.65 E-value=3.8 Score=37.24 Aligned_cols=38 Identities=21% Similarity=0.495 Sum_probs=28.6
Q ss_pred ccchHHHHHHCCCeEE-ecCCCCCCchHHHHHHHhcCcEEE
Q 007518 552 WKDAVEEACENGIGVI-AEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 552 ~~D~ve~Aa~aGi~aI-IQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.|-++.+.+.|++++ +||| .+++|++++|+++||.++
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g--~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG--AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT--S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEcc--hHHHHHHHHHHHcCCEEE
Confidence 3488999999999875 6777 779999999999999976
No 36
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=74.61 E-value=3.9 Score=40.85 Aligned_cols=121 Identities=25% Similarity=0.318 Sum_probs=75.8
Q ss_pred EEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCC-------CCccccccccc--ccccc
Q 007518 78 ALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEML-------DGRVKTLHPNI--HGGIL 148 (600)
Q Consensus 78 ALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEil-------dGRVKTLHPkI--hGGIL 148 (600)
++|+..==.|=-.+++.|.++|++.+.-. ++.+++|. +||++|.. +.=.+-|+|.+ .++|+
T Consensus 3 I~ITGTPGvGKTT~~~~L~~lg~~~i~l~---el~~e~~~-------~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Iv 72 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLRELGYKVIELN---ELAKENGL-------YTEYDELRKSVIVDVDKLRKRLEELLREGSGIV 72 (180)
T ss_pred EEEeCCCCCchHHHHHHHHHhCCceeeHH---HHHHhcCC-------eeccCCccceEEeeHHHHHHHHHHHhccCCeEe
Confidence 33443322333457778888888888764 78888888 78887752 34447788854 36666
Q ss_pred cCCCCHHhHHHHHHcCCCceeEEEE-eccCcH--HhhhcCCCCChhhhhhccccchHHHHHHHHH-CCCCEEEE
Q 007518 149 ARRDQKHHMDALSEHGIGTFDLVVV-NLYPFY--DKVTSAGGIDFEDGIENIDIGGPAMIRAAAK-NHKDVLVV 218 (600)
Q Consensus 149 arr~~~~h~~~l~~~~I~~IDlVVV-NLYPFe--~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK-N~~~V~Vv 218 (600)
. .|...| ++.+||||| -.+|+. +-.++. |-+.+.+.||++-=-...+=.=|. -|..|..|
T Consensus 73 d-----~H~~hl----~~~~dlVvVLR~~p~~L~~RLk~R-Gy~~eKI~ENveAEi~~vi~~EA~E~~~~v~ev 136 (180)
T COG1936 73 D-----SHLSHL----LPDCDLVVVLRADPEVLYERLKGR-GYSEEKILENVEAEILDVILIEAVERFEAVIEV 136 (180)
T ss_pred e-----chhhhc----CCCCCEEEEEcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 4 555433 235999887 566664 445554 899999999998655444433333 23445444
No 37
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.32 E-value=4.3 Score=41.47 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=31.9
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|+..|+-|| =|+||++.|+++||+.+
T Consensus 82 e~a~~a~~aGA~FiVsP~---~~~~v~~~~~~~~i~~i 116 (222)
T PRK07114 82 ATAALYIQLGANFIVTPL---FNPDIAKVCNRRKVPYS 116 (222)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHcCCCEe
Confidence 778899999999999997 38999999999999875
No 38
>PLN02384 ribose-5-phosphate isomerase
Probab=70.82 E-value=10 Score=39.90 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCccCc--eEEeecccccCCccchHHHHHHCCCe
Q 007518 488 DAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKG--AALASDAFFPFAWKDAVEEACENGIG 565 (600)
Q Consensus 488 dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~G--avlASDAFFPF~~~D~ve~Aa~aGi~ 565 (600)
-..-|+++++||+| |++||+|.|.|...---++|-+...+.+++ +|-.| . ++-..|.++|+.
T Consensus 36 K~~aA~~A~~~V~~--------gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS------~--~T~~~a~~~GIp 99 (264)
T PLN02384 36 KKIAAYKAVEFVES--------GMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTS------K--KTHEQAVSLGIP 99 (264)
T ss_pred HHHHHHHHHHhccC--------CCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCc------H--HHHHHHHHcCCc
Confidence 34688999999875 789999999988733234443322222332 22223 1 566777788886
No 39
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=69.84 E-value=29 Score=33.94 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=62.5
Q ss_pred EEEeCCeEEEecCCCCc-------------------------------------HHHHHHHHHHHcC---CccCceEEee
Q 007518 505 VIAKNNCMLGMGSGQPN-------------------------------------RRESLRIAMKKAG---DEVKGAALAS 544 (600)
Q Consensus 505 V~ak~~~tvGiGaGQ~s-------------------------------------RVds~~iA~~kA~---~~~~GavlAS 544 (600)
||++|++.|+.|-=++- .+.|-..|+.+|. ..+.|+.|-.
T Consensus 27 VIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~nAi~~a~~~~~~~~g~tLYv 106 (168)
T PHA02588 27 VIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNEIHAELNAILFAARNGISIEGATMYV 106 (168)
T ss_pred EEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCCCccHHHHHHHHHhhcCCCCCCcEEEE
Confidence 56699999999965432 3466666787773 4578887755
Q ss_pred cccccCCccchHHHHHHCCCeEEecCCCCCC-chHHHHHHHhcCcEEE
Q 007518 545 DAFFPFAWKDAVEEACENGIGVIAEPGGSIR-DGDAIDCCNKYGVALL 591 (600)
Q Consensus 545 DAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiR-D~evI~aa~e~giaMv 591 (600)
-.+|=+ -+......+||+.|+=+..--+ +.+.++.-++.||...
T Consensus 107 -TlePC~--~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~ 151 (168)
T PHA02588 107 -TASPCP--DCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVI 151 (168)
T ss_pred -eCCCcH--HHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEE
Confidence 388999 9999999999999997654212 3457889999999865
No 40
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=67.37 E-value=22 Score=40.64 Aligned_cols=139 Identities=14% Similarity=0.171 Sum_probs=82.7
Q ss_pred EEecCcccHHHHH-HHHHHcCcEE-EEechhHHHHHHC-CCeeEEecccCCCCCCCCC--cccccccccccccccCCCCH
Q 007518 80 ISLSDKKDLASLG-IGLQELGYTI-VSTGGTATSLENA-GVSVTKVEQLTCFPEMLDG--RVKTLHPNIHGGILARRDQK 154 (600)
Q Consensus 80 ISVsDK~glv~~A-k~L~~lGfeI-iATgGTAk~L~e~-GI~v~~VskiTGfPEildG--RVKTLHPkIhGGILarr~~~ 154 (600)
+-+.|=...+++| +.+...|+++ +|-||||.+|+++ .|||.+|. ++|| ++|.- +.|..+.+| |++.-.+..
T Consensus 34 v~~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~~~~iPVv~i~-~s~~-Dil~al~~a~~~~~~i--a~vg~~~~~ 109 (526)
T TIGR02329 34 PIQLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKSRLSLPVIVIK-PTGF-DVMQALARARRIASSI--GVVTHQDTP 109 (526)
T ss_pred EEeccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHhCCCCEEEec-CChh-hHHHHHHHHHhcCCcE--EEEecCccc
Confidence 4445655567777 5577778875 5779999999995 78888875 5777 45442 334445555 666655555
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHH---hhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 007518 155 HHMDALSEHGIGTFDLVVVNLYPFYD---KVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~---tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL 231 (600)
..++.+.+. -.+|+.+.-..--++ .+.+ --++.++ +=|||....+.|.|.--+-..+++. +.+.+.+
T Consensus 110 ~~~~~~~~l--l~~~i~~~~~~~~~e~~~~~~~----l~~~G~~-~viG~~~~~~~A~~~gl~~ili~s~---esi~~a~ 179 (526)
T TIGR02329 110 PALRRFQAA--FNLDIVQRSYVTEEDARSCVND----LRARGIG-AVVGAGLITDLAEQAGLHGVFLYSA---DSVRQAF 179 (526)
T ss_pred HHHHHHHHH--hCCceEEEEecCHHHHHHHHHH----HHHCCCC-EEECChHHHHHHHHcCCceEEEecH---HHHHHHH
Confidence 555555532 233444443333332 2221 0011122 2379999999998877666666663 6666666
Q ss_pred h
Q 007518 232 K 232 (600)
Q Consensus 232 ~ 232 (600)
+
T Consensus 180 ~ 180 (526)
T TIGR02329 180 D 180 (526)
T ss_pred H
Confidence 4
No 41
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=65.64 E-value=7.4 Score=35.50 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=30.3
Q ss_pred chHHHHHHCCCeEEecCCC-CCC--chHHHHHHHhcCcEEEecCC
Q 007518 554 DAVEEACENGIGVIAEPGG-SIR--DGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGG-SiR--D~evI~aa~e~giaMvfTg~ 595 (600)
+-|+.+++.|+.+++=--| .+. .+++|++||+++++++....
T Consensus 63 ~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 63 EFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 5567777777777665444 222 46999999999999998654
No 42
>PRK08264 short chain dehydrogenase; Validated
Probab=65.05 E-value=47 Score=31.94 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=66.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCc-EEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGY-TIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGf-eIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~ 154 (600)
+++||....--=-..+|+.|.+.|+ +++.+.-..+.+++ .+.+|+.+. ++-.++
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-----------------~~~~~~~~~--------~D~~~~ 61 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-----------------LGPRVVPLQ--------LDVTDP 61 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-----------------cCCceEEEE--------ecCCCH
Confidence 5688877644334678899999999 98888766555544 122333322 111234
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccc--cchHHH-HHHHH-----HCCCCEEEEeCCCC
Q 007518 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENID--IGGPAM-IRAAA-----KNHKDVLVVVGSED 223 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnID--IGGpsm-iRAAA-----KN~~~V~Vv~dP~D 223 (600)
+.++++.+. +.++|+||.|--.+...-.-. ..+.++..+.++ .-|+-. ++++. ++..+++.+++..-
T Consensus 62 ~~~~~~~~~-~~~id~vi~~ag~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~ 136 (238)
T PRK08264 62 ASVAAAAEA-ASDVTILVNNAGIFRTGSLLL-EGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLS 136 (238)
T ss_pred HHHHHHHHh-cCCCCEEEECCCcCCCCCccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhh
Confidence 455554442 468999999875421110000 234555544444 455543 34432 24556666666543
No 43
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=64.61 E-value=10 Score=35.02 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=37.6
Q ss_pred ccccccccccccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCC
Q 007518 138 TLHPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNH 212 (600)
Q Consensus 138 TLHPkIhGGILarr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~ 212 (600)
.++|.--...-.+.....-+.-++..|++ -++|+|||||..|-.+ .+..+-+-|+.=.-..|+.++|..
T Consensus 19 ~lNPS~A~~~~~D~T~~~~~~~a~~~gyg--~~~i~NLf~~~~t~p~----~l~~~~~~~~~~N~~~i~~~~~~~ 87 (136)
T PF07799_consen 19 GLNPSTADAEKDDPTIRRCINFARRWGYG--GVIIVNLFPQRSTDPK----DLKKAPDPIGPENDEHIREALKEA 87 (136)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHhhcCCC--eEEEEEecccccCCHH----HHHhccCcccHhHHHHHHHHHhcc
Confidence 34454443333333223334446777888 6789999999886332 122222333333445677777744
No 44
>PRK07102 short chain dehydrogenase; Provisional
Probab=64.57 E-value=28 Score=33.79 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=64.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+++||+....-=-..+++.|.+.|++++.+.-...-+++. ..++. ..-+++|..++- +-.+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~------~~~~~---~~~~~~~~~~~~--------Dl~~~~ 64 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERL------ADDLR---ARGAVAVSTHEL--------DILDTA 64 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH------HHHHH---HhcCCeEEEEec--------CCCChH
Confidence 4677777654334778899999999998886444333220 00000 001234443321 112334
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhh--ccccchHH-HHHHHHH-----CCCCEEEEeCC
Q 007518 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIE--NIDIGGPA-MIRAAAK-----NHKDVLVVVGS 221 (600)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IE--nIDIGGps-miRAAAK-----N~~~V~Vv~dP 221 (600)
+++++.+.-...+|+||.|-..+...-.. +.+.++..+ +++.-|+- +++++.+ +..++.++++.
T Consensus 65 ~~~~~~~~~~~~~d~vv~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 65 SHAAFLDSLPALPDIVLIAVGTLGDQAAC--EADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred HHHHHHHHHhhcCCEEEECCcCCCCcccc--cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 44443332223469999886543221111 345555544 34555554 3444443 35667777765
No 45
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=63.69 E-value=10 Score=32.97 Aligned_cols=41 Identities=17% Similarity=0.292 Sum_probs=34.2
Q ss_pred HHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCcc
Q 007518 556 VEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRH 597 (600)
Q Consensus 556 ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RH 597 (600)
.+.+.++|+...+--||++ -+.+.++|+++++.|++.|.|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~-~~~I~~~~~~~~~dllviG~~~ 95 (124)
T cd01987 55 LRLAEELGAEVVTLPGDDV-AEAIVEFAREHNVTQIVVGKSR 95 (124)
T ss_pred HHHHHHcCCEEEEEeCCcH-HHHHHHHHHHcCCCEEEeCCCC
Confidence 4556678888877778886 5789999999999999999874
No 46
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.34 E-value=9.1 Score=38.74 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=32.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+.++.|.++|+..|+-||= |+|+|+.|.++||.++
T Consensus 78 ~~a~~a~~aGA~FivsP~~---~~~vi~~a~~~~i~~i 112 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPGL---TPPLLKAAQEGPIPLI 112 (212)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEe
Confidence 7799999999999999984 4599999999999988
No 47
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=62.75 E-value=18 Score=37.42 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCccCceEEeecccccCCccchHHHHHHCCCeEEe
Q 007518 489 AEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKGAALASDAFFPFAWKDAVEEACENGIGVIA 568 (600)
Q Consensus 489 L~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aII 568 (600)
.+-||+++.||++ |++||+|.|.|-.-.-=.++-.+.++.-.++|-.|. ++-..|.+.||
T Consensus 8 ~~aa~~A~~~v~~--------gmviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~--------~t~~l~~~~GI---- 67 (227)
T COG0120 8 KAAAKAALEYVKD--------GMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSF--------QTEELARELGI---- 67 (227)
T ss_pred HHHHHHHHHHhcC--------CCEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCH--------HHHHHHHHcCC----
Confidence 4689999999998 899999999887744444442222222235555552 68888999998
Q ss_pred cCCCCCCchH
Q 007518 569 EPGGSIRDGD 578 (600)
Q Consensus 569 QPGGSiRD~e 578 (600)
|=.|..+-+
T Consensus 68 -~v~~l~~~~ 76 (227)
T COG0120 68 -PVSSLNEVD 76 (227)
T ss_pred -eecCccccC
Confidence 445555544
No 48
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=61.08 E-value=2.4 Score=37.37 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=32.5
Q ss_pred cCceEEeecccccCCccchHHHHHHCCCeEEecCCCCC
Q 007518 537 VKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSI 574 (600)
Q Consensus 537 ~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSi 574 (600)
..|..+.|-.|.||. |-+-...+.|++.||.||..-
T Consensus 7 ~~~~~v~~~~F~PfE--DvLgvGh~~G~sSiiVPGsGe 42 (80)
T PF08149_consen 7 KPGSPVESLRFCPFE--DVLGVGHSKGFSSIIVPGSGE 42 (80)
T ss_pred CCCCeeeeeEEechH--HeeEeeccCceeEEeccCCCC
Confidence 357788999999999 999999999999999999754
No 49
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=60.40 E-value=29 Score=34.28 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=68.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+++||+.....=-..+++.|.+.|++++.+..+...+++.- .++.. .++|+..+ .++-.+++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~------~~~~~----~~~~~~~~--------~~Dl~~~~ 72 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGL------AAYRE----LGIEAHGY--------VCDVTDED 72 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH------HHHHh----cCCceEEE--------EcCCCCHH
Confidence 56888877654446789999999999998877765554410 01100 12333322 22223344
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc--chH-HHHHHHHH-----CCCCEEEEeCC
Q 007518 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI--GGP-AMIRAAAK-----NHKDVLVVVGS 221 (600)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI--GGp-smiRAAAK-----N~~~V~Vv~dP 221 (600)
.++++-+ ...++||.||.|--.+...-.. ..+.++.-+.+++ -|| .+++++.+ +..+++.+++.
T Consensus 73 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~ 147 (265)
T PRK07097 73 GVQAMVSQIEKEVGVIDILVNNAGIIKRIPML--EMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSM 147 (265)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcc--cCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 4433322 2356899999998654321111 3455665555554 333 34444433 45567777664
No 50
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=59.82 E-value=9.2 Score=38.69 Aligned_cols=96 Identities=22% Similarity=0.262 Sum_probs=51.9
Q ss_pred cEEEEEecC-----cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcc---ccccccccccc
Q 007518 76 KQALISLSD-----KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRV---KTLHPNIHGGI 147 (600)
Q Consensus 76 ~rALISVsD-----K~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRV---KTLHPkIhGGI 147 (600)
+|+|+.|.. -+.-+.+|+.|...-+.+++.+--.++|++. +++..+..+. + ..-+|++ +|++-..+-
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lrg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-- 75 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALRGHEVTFITSGPAPEFLKPR-FPVREIPGLG-P-IQENGRLDRWKTVRNNIRW-- 75 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHccCceEEEEcCCcHHHhccc-cCEEEccCce-E-eccCCccchHHHHHHHHHh--
Confidence 467777763 4567889999944334444444444788776 5766664441 1 1122333 444433311
Q ss_pred ccCCCCHHhHH-HHHHcCCCceeEEEEeccCc
Q 007518 148 LARRDQKHHMD-ALSEHGIGTFDLVVVNLYPF 178 (600)
Q Consensus 148 Larr~~~~h~~-~l~~~~I~~IDlVVVNLYPF 178 (600)
+. .....++ ..+...-..+|+||++.||+
T Consensus 76 ~~--~~~~~~~~~~~~l~~~~pDlVIsD~~~~ 105 (318)
T PF13528_consen 76 LA--RLARRIRREIRWLREFRPDLVISDFYPL 105 (318)
T ss_pred hH--HHHHHHHHHHHHHHhcCCCEEEEcChHH
Confidence 11 1111211 22334455699999999998
No 51
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=58.31 E-value=47 Score=35.98 Aligned_cols=112 Identities=29% Similarity=0.340 Sum_probs=77.1
Q ss_pred ccceeecCCCCCHHHHHHHHHHHHHHhhhc-ceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHc--CC--ccCceEEeec
Q 007518 471 IQFKVVSEKKPQESELHDAEFAWLCVKHVK-SNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKA--GD--EVKGAALASD 545 (600)
Q Consensus 471 ~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvK-SNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA--~~--~~~GavlASD 545 (600)
..++....+.++---+-|+.-||++++-.. .+|.|++|.+.--|++.| +.+..|.+|| .| +.=|.++|.-
T Consensus 104 ~~~~qL~GKeLSyNN~lD~daA~~lv~ef~~~pa~vivKH~nPCGvA~~-----~~~~eAy~~A~~~Dp~SaFGGIva~N 178 (315)
T PF01808_consen 104 APAEQLQGKELSYNNLLDADAAWRLVREFDDEPACVIVKHNNPCGVAIG-----DTLLEAYEKAFACDPVSAFGGIVAFN 178 (315)
T ss_dssp HSEEEEESS---HHHHHHHHHHHHHHHCCCHSCEEEEEETTEEEEEEEE-----SHHHHHHHHHHHSTTTTTTTEEEEES
T ss_pred cchHHhcCcCcccCCchhHHHHHHHHHHcCCCCeEEEEecCccceeEec-----CCHHHHHHHHHHhCcccccCCEEEEc
Confidence 467888889999999999999999999999 999999999999999998 4556666666 44 3448888765
Q ss_pred ccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHH-HHhcCcEEEec
Q 007518 546 AFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDC-CNKYGVALLLT 593 (600)
Q Consensus 546 AFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~a-a~e~giaMvfT 593 (600)
. |.. .+.-+...+.=+..||.|+=+ +|..+. ..+-|+-++-.
T Consensus 179 ~--~vD-~~~A~~i~~~F~EviiAP~f~---~eAleiL~~KKnlRll~~ 221 (315)
T PF01808_consen 179 R--PVD-EETAEEISEIFLEVIIAPDFT---PEALEILKKKKNLRLLKL 221 (315)
T ss_dssp S--EB--HHHHHHHCTS-EEEEEESEB----HHHHHHHHCTCCGEEEEE
T ss_pred C--ccC-HHHHHHHHhceEEEEEeCCCC---HHHHHHHHhcCCeEEEEe
Confidence 4 333 234444555557889999865 444433 33446666543
No 52
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=57.29 E-value=12 Score=38.43 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=32.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+-++.|+++|..-||-||= |.|+|++|+++||+.+
T Consensus 76 ~q~~~a~~aGa~fiVsP~~---~~ev~~~a~~~~ip~~ 110 (211)
T COG0800 76 EQARQAIAAGAQFIVSPGL---NPEVAKAANRYGIPYI 110 (211)
T ss_pred HHHHHHHHcCCCEEECCCC---CHHHHHHHHhCCCccc
Confidence 7789999999999999984 8999999999999864
No 53
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=55.46 E-value=17 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.220 Sum_probs=32.8
Q ss_pred chHHHHHHCCCeEEecCCCC--CCc-hHHHHHHHhcCcEEEec
Q 007518 554 DAVEEACENGIGVIAEPGGS--IRD-GDAIDCCNKYGVALLLT 593 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGS--iRD-~evI~aa~e~giaMvfT 593 (600)
..++.+.++||+.|+.+|.+ -+| +.+.+.|+++|+.++++
T Consensus 36 ~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 78 (293)
T cd00530 36 EELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAA 78 (293)
T ss_pred HHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEe
Confidence 46788899999999999986 356 68899999999876654
No 54
>PRK06101 short chain dehydrogenase; Provisional
Probab=55.08 E-value=1.2e+02 Score=29.58 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=27.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+...--=-..+++.|.+.|++++.+.-..+.+++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~ 40 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDE 40 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 467777664222257899999999999998766655554
No 55
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=54.78 E-value=35 Score=31.83 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcc----eEEEEEeCCeEEEecCCCCc--------------------------HHHHHHHHHHHcC---C
Q 007518 489 AEFAWLCVKHVKS----NAIVIAKNNCMLGMGSGQPN--------------------------RRESLRIAMKKAG---D 535 (600)
Q Consensus 489 L~FAwkvvKhvKS----NAIV~ak~~~tvGiGaGQ~s--------------------------RVds~~iA~~kA~---~ 535 (600)
|..|+..++..+. -+-||+++|+.||.|-.+.. -+.|-..|+.+|. .
T Consensus 5 m~~A~~~A~~s~~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~~~~ 84 (131)
T cd01286 5 MAIARLAALRSTCPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAARHGV 84 (131)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhHcCC
Confidence 4555666654222 13467789999999977653 3566666777765 3
Q ss_pred ccCceEEeecccccCCccchHHHHHHCCCeEEecCC
Q 007518 536 EVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPG 571 (600)
Q Consensus 536 ~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPG 571 (600)
.+.|+.|-.= .+|=+ -+.....++||+.|+=..
T Consensus 85 ~~~~~tLyvT-~ePC~--~C~~ai~~~gI~~Vvy~~ 117 (131)
T cd01286 85 SLEGATLYVT-LFPCI--ECAKLIIQAGIKKVVYAE 117 (131)
T ss_pred CcCCeEEEEe-cCcHH--HHHHHHHHhCCCEEEEee
Confidence 6788877664 78888 899999999999998553
No 56
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=53.83 E-value=70 Score=35.24 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHHHhhh---cc----eEEEEEeCCeEEEecCCCCc-HHHHHHHHHHHcCCccCceEEeecccccC-
Q 007518 480 KPQESELHDAEFAWLCVKHV---KS----NAIVIAKNNCMLGMGSGQPN-RRESLRIAMKKAGDEVKGAALASDAFFPF- 550 (600)
Q Consensus 480 ~Pt~~e~~dL~FAwkvvKhv---KS----NAIV~ak~~~tvGiGaGQ~s-RVds~~iA~~kA~~~~~GavlASDAFFPF- 550 (600)
.|+.++ .-|..|...++.- .+ -+-|+++||+.||.|--+.. ..+|-..|+++|++.+.|+.|-.= ..|=
T Consensus 28 ~~~~d~-~~M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g~~HAEi~Ai~~a~~~~~g~tlyvT-LEPC~ 105 (380)
T PLN02807 28 AGDDDS-FYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDAGDLAENATAYVS-LEPCN 105 (380)
T ss_pred CCchHH-HHHHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHhhhhcCCcEEEEE-cCCCc
Confidence 344433 2355566555542 11 24567799999999965432 256777899999888888876552 6777
Q ss_pred -----CccchHHHHHHCCCeEEe------cCCCCCCchHHHHHHHhcCcEE
Q 007518 551 -----AWKDAVEEACENGIGVIA------EPGGSIRDGDAIDCCNKYGVAL 590 (600)
Q Consensus 551 -----~~~D~ve~Aa~aGi~aII------QPGGSiRD~evI~aa~e~giaM 590 (600)
+ -|.+...++||+.|+ -|+.. ...++.-.+.||.+
T Consensus 106 h~Gktp--~C~~aii~agI~rVv~g~~dp~~~~~---g~g~~~l~~~gi~V 151 (380)
T PLN02807 106 HYGRTP--PCTEALIKAKVKRVVVGMVDPNPIVA---SKGIERLRDAGIEV 151 (380)
T ss_pred CCCCCh--HHHHHHHHhCCCEEEEEecCCCcccc---chHHHHHHhCCCEE
Confidence 6 799999999999988 34432 23455566777764
No 57
>PRK08267 short chain dehydrogenase; Provisional
Probab=53.79 E-value=51 Score=32.32 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=28.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+++.|.+.|++++.+..+.+.+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAA 40 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 567777765433467889999999999998766665554
No 58
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=53.71 E-value=74 Score=34.47 Aligned_cols=129 Identities=21% Similarity=0.224 Sum_probs=79.6
Q ss_pred ccHHHH----HHHHHHcCcEEEEe----chhHHHHHHCCCeeEEecccCCCCCCC---CCcccccccccccccccCCCCH
Q 007518 86 KDLASL----GIGLQELGYTIVST----GGTATSLENAGVSVTKVEQLTCFPEML---DGRVKTLHPNIHGGILARRDQK 154 (600)
Q Consensus 86 ~glv~~----Ak~L~~lGfeIiAT----gGTAk~L~e~GI~v~~VskiTGfPEil---dGRVKTLHPkIhGGILarr~~~ 154 (600)
.||-++ .+.+.++|.-|.-+ .++...|.- +.+|=+. +-|..+=|| |.=.+
T Consensus 145 ~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~~Dvl~~-----------s~~PviaSHSN~~al~~h~--------RNl~D 205 (313)
T COG2355 145 GGLTPFGKELVREMNELGIIIDLSHLSDKTFWDVLDL-----------SKAPVVASHSNARALVDHP--------RNLSD 205 (313)
T ss_pred CCCCHHHHHHHHHHHhcCCEEEecccCCccHHHHHhc-----------cCCceEEecCCchhccCCC--------CCCCH
Confidence 455544 45556677777644 444444444 3344333 234444454 34567
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc----chHHHHHHHHHCCCC-------------EEE
Q 007518 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI----GGPAMIRAAAKNHKD-------------VLV 217 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI----GGpsmiRAAAKN~~~-------------V~V 217 (600)
++++++.+.| =+|-||+||---+-.+.+..|++++++.||- +| +++ +.-
T Consensus 206 ~qlkaI~~~g----GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G----------~dhVglGsDf~g~~~~p~g 271 (313)
T COG2355 206 EQLKAIAETG----GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVG----------IDHVGLGSDFDGGTGPPDG 271 (313)
T ss_pred HHHHHHHhcC----CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcC----------cceeEecccccCCCCCchh
Confidence 8888898887 4788899884322111126799999999972 11 122 445
Q ss_pred EeCCCCHHHHHHHHhCCCCCHHHHHHHHHH
Q 007518 218 VVGSEDYPALLEFLKGNQDDQQFRRKLAWK 247 (600)
Q Consensus 218 v~dP~DY~~vl~eL~~G~~s~~~R~~LA~k 247 (600)
+=|++.|+.++++|..-..+.+.=+++|.+
T Consensus 272 led~~~l~~l~~~L~~~G~~e~~i~~i~~~ 301 (313)
T COG2355 272 LEDVGKLPNLTAALIERGYSEEEIEKIAGE 301 (313)
T ss_pred hcChhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 667889999999998733777777777766
No 59
>PRK09186 flagellin modification protein A; Provisional
Probab=53.37 E-value=1.4e+02 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.118 Sum_probs=28.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+-...-=-..+|+.|.+.|++++.+.-+.+.++
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~ 42 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALN 42 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHH
Confidence 57888887654446789999999999999976554443
No 60
>PRK08862 short chain dehydrogenase; Provisional
Probab=53.33 E-value=30 Score=34.19 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=30.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+-...-=-..+|+.|.+.|++++.++-+.+.|++
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~ 44 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKD 44 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 468888776544468999999999999999877776655
No 61
>PRK04017 hypothetical protein; Provisional
Probab=52.01 E-value=68 Score=30.76 Aligned_cols=66 Identities=26% Similarity=0.495 Sum_probs=45.1
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHH-----HHH
Q 007518 155 HHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPA-----LLE 229 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~-----vl~ 229 (600)
.|.+.|++.|+.. +++++|=+|+.+.. | ++ |-+.+.|.++|||+.=.+ +.+
T Consensus 32 ~D~~~L~~lGv~~-~iI~t~g~~~~~~~------------e--------~i---a~~~r~VIILTD~D~~GekIr~~l~~ 87 (132)
T PRK04017 32 RDVESLRKLGVEG-EIIKVSRTPLAEIA------------E--------LI---ASRGKEVIILTDFDRKGEELAKKLSE 87 (132)
T ss_pred cHHHHHHHcCCCc-cEEEECCeecchHH------------H--------HH---HhcCCeEEEEECCCcchHHHHHHHHH
Confidence 4567799999975 77778877764322 1 22 348899999999986443 333
Q ss_pred HHhC--CCCCHHHHHHH
Q 007518 230 FLKG--NQDDQQFRRKL 244 (600)
Q Consensus 230 eL~~--G~~s~~~R~~L 244 (600)
.|.. -.++.++|++|
T Consensus 88 ~l~~~G~~vd~~~R~~l 104 (132)
T PRK04017 88 YLQGYGIKVDTEIRREL 104 (132)
T ss_pred HHHhCCCCccHHHHHHH
Confidence 3443 36888888887
No 62
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.88 E-value=1.7e+02 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.089 Sum_probs=23.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+++||+....-=-..+++.|.+.|++++.+..
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 57888876543335688999999999987644
No 63
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=51.59 E-value=46 Score=34.67 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHHHH-------hhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHH---cCCccCceEEeecccc
Q 007518 479 KKPQESELHDAEFAWLCV-------KHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKK---AGDEVKGAALASDAFF 548 (600)
Q Consensus 479 ~~Pt~~e~~dL~FAwkvv-------KhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~k---A~~~~~GavlASDAFF 548 (600)
-+++.+++.++.-.+.-. --+-+ |.++..+|..+-+ .=-..|..|+--++-. .|..+.+.+|.+-.=-
T Consensus 132 ~~i~~~~i~~~~~~l~~~~~l~~~TGgvH~-aal~~~~g~~l~~-~EDIGRHNAvDKviG~all~g~~~~~~~l~~SGR~ 209 (263)
T PRK00724 132 QTFTAEDLDRAMAQLQDAQPLFQLTGGVHA-AALLCPDGELLAV-REDVGRHNALDKLIGAALRAGIPLRDGALLVSGRA 209 (263)
T ss_pred CccCHHHHHHHHHHHHhhChhhhccCceeE-EEEEcCCCCEEEE-EecCchhHHHHHHHHHHHHcCCCccCcEEEEeCCc
Confidence 345667766665443321 11112 2233345544433 1224465555443333 3556777788777878
Q ss_pred cCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE-ecCCccC
Q 007518 549 PFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL-LTSVRHF 598 (600)
Q Consensus 549 PF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv-fTg~RHF 598 (600)
|| |-|..|+.+||..|+-.+.- -..-|+.|+++||++| |+.-..|
T Consensus 210 s~---emv~Ka~~aGipvivS~saP--T~lAVelA~~~giTLiGf~R~~r~ 255 (263)
T PRK00724 210 SS---EMVQKAAMAGIPILVAVSAP--TSLAVELAEELGLTLVGFARGGRF 255 (263)
T ss_pred hH---HHHHHHHHcCCcEEEEcccc--hHHHHHHHHHhCCEEEEEecCCCe
Confidence 77 59999999999999999887 6789999999999998 6554444
No 64
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=50.86 E-value=67 Score=31.09 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=25.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGT 108 (600)
+++||+....-=-..+++.|.+.|++++.+.-+
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~ 41 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA 41 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence 578887765444467889999999999988654
No 65
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=50.52 E-value=33 Score=34.17 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=49.7
Q ss_pred cCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 537 VKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 537 ~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
..+..++=|-|-| +.++.|.++|+..|+--.|--.|+++++.|.+||.++|...++
T Consensus 70 ~~~~plSIDT~~~----~v~~~aL~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 70 NPDVPLSIDTFNP----EVAEAALKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HTTSEEEEEESSH----HHHHHHHHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred CCCeEEEEECCCH----HHHHHHHHcCcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 3588999999875 8899999999999999888666999999999999999987766
No 66
>PRK12743 oxidoreductase; Provisional
Probab=50.40 E-value=44 Score=32.88 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=23.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiAT 105 (600)
+++||+....-=-..+++.|.+.|++++.+
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~ 32 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGIT 32 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 578888775443477899999999999876
No 67
>PRK06500 short chain dehydrogenase; Provisional
Probab=50.28 E-value=61 Score=31.24 Aligned_cols=38 Identities=26% Similarity=0.166 Sum_probs=28.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+++.|.+.|++++.++-....++
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 44 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLE 44 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHH
Confidence 57888887655557889999999999998865544343
No 68
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=50.15 E-value=23 Score=35.53 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCc--cCc----eEEeecccccCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 522 RRESLRIAMKKAGDE--VKG----AALASDAFFPFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 522 RVds~~iA~~kA~~~--~~G----avlASDAFFPF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
-..++++|+++.+.+ +.| .+...|..=|..-.+.++.+.+. ||.+||-|.+|---..+...|++.+|++|.++
T Consensus 19 ~~~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~i~~~ 98 (334)
T cd06347 19 EKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAANAATRLIDQDKVVAIIGPVTSGATLAAGPIAEDAKVPMITPS 98 (334)
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEEEEecCCCChHHHHHHHHHHhcccCeEEEEcCCccHhHHHhHHHHHHCCCeEEcCC
Confidence 347888898886432 222 45555556666655677778876 99999999888666688899999999999854
No 69
>PF02634 FdhD-NarQ: FdhD/NarQ family; InterPro: IPR003786 Formate dehydrogenase is required for nitrate inducible formate dehydrogenase activity. In Wolinella succinogenes it is a membranous molybdo-enzyme which is involved in phosphorylative electron transport. The functional formate dehydrogenase may be made up of three or four different subunits []. In Escherichia coli, FdhD is required for the formation of active formate dehydrogenases.; GO: 0008863 formate dehydrogenase (NAD+) activity, 0009326 formate dehydrogenase complex; PDB: 2PW9_D.
Probab=48.83 E-value=39 Score=34.48 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=57.5
Q ss_pred EEEEEeCCeEEEecCCCCcHHHHHHHHHHHc---CCccCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHH
Q 007518 503 AIVIAKNNCMLGMGSGQPNRRESLRIAMKKA---GDEVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDA 579 (600)
Q Consensus 503 AIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA---~~~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~ev 579 (600)
|.++..+|..+-+- =-..|..|+--++-++ |..+.+.+|.+-.=-|+ |-|..|+++||..|+-.+.- -.-.
T Consensus 133 aal~~~~g~~~~~~-EDIGRHNA~DK~iG~~ll~g~~~~~~~l~~SGR~s~---emv~Ka~~aGipvivS~sap--T~~a 206 (236)
T PF02634_consen 133 AALFDEDGEILLVR-EDIGRHNALDKLIGAALLNGIDLSDKILLTSGRISS---EMVQKAARAGIPVIVSRSAP--TSLA 206 (236)
T ss_dssp EEEEE-TTEEEEEE-EESSHHHHHHHHHHHHHT-TSS-SSSEEEESS-B-H---HHHHHHHHHT-SEEEESS-B---HHH
T ss_pred EEEEecCCcEEEEE-EECchhhHHHHHHHHHHhCCCCccCcEEEEcCccCH---HHHHHHHHcCCCEEEEcccc--cHHH
Confidence 44444466655432 2245766665544443 55677888888787877 59999999999999998887 6789
Q ss_pred HHHHHhcCcEEE-ecCCcc
Q 007518 580 IDCCNKYGVALL-LTSVRH 597 (600)
Q Consensus 580 I~aa~e~giaMv-fTg~RH 597 (600)
|+.|+++||+|+ |..-..
T Consensus 207 v~~A~~~gitLigf~R~~~ 225 (236)
T PF02634_consen 207 VELARKLGITLIGFARGGR 225 (236)
T ss_dssp HHHHHHHT-EEEEEEETTE
T ss_pred HHHHHHhCCEEEEEecCCC
Confidence 999999999998 654433
No 70
>PRK06179 short chain dehydrogenase; Provisional
Probab=48.81 E-value=84 Score=31.01 Aligned_cols=119 Identities=15% Similarity=0.093 Sum_probs=63.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+++||+...--=-..+++.|.+.|++++.+.-+...+... .+|.. +-+=+ .+++
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~------------------~~~~~-----~~~D~---~d~~ 58 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI------------------PGVEL-----LELDV---TDDA 58 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc------------------CCCee-----EEeec---CCHH
Confidence 4688877653333578899999999999886543322210 11211 11222 2334
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHH-----HCCCCEEEEeCCC
Q 007518 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAA-----KNHKDVLVVVGSE 222 (600)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAA-----KN~~~V~Vv~dP~ 222 (600)
.++++-+ ...+++|+||.|--.+...-.. ..+.++.-+.+++ |=..+++++. ++..+++.+++..
T Consensus 59 ~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~ 134 (270)
T PRK06179 59 SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAE--ESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVL 134 (270)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcc--cCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCcc
Confidence 4433222 1235799999998654321111 2344555454554 4445666642 3566777766643
No 71
>PRK07060 short chain dehydrogenase; Provisional
Probab=48.75 E-value=1.6e+02 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=27.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+.....=-..+++.|.+.|++++.+.-+.+.++
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~ 47 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALD 47 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888776443346788999999999999876654443
No 72
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=48.55 E-value=1.4e+02 Score=33.34 Aligned_cols=157 Identities=22% Similarity=0.185 Sum_probs=88.5
Q ss_pred EEEecCcccHHHHHHHHHH------cCcEEEEech-----hHHHHHHCCCeeEEecccC--CCCCCCCCccccccccccc
Q 007518 79 LISLSDKKDLASLGIGLQE------LGYTIVSTGG-----TATSLENAGVSVTKVEQLT--CFPEMLDGRVKTLHPNIHG 145 (600)
Q Consensus 79 LISVsDK~glv~~Ak~L~~------lGfeIiATgG-----TAk~L~e~GI~v~~VskiT--GfPEildGRVKTLHPkIhG 145 (600)
.+-|.|-+.+.++++.|.. .+.-|++.+| ++..+.++|+.+-..++-| ..-++|-..+..-.|-=-+
T Consensus 271 v~~~~~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~ 350 (447)
T TIGR02717 271 VIRADSIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVL 350 (447)
T ss_pred eEEeCCHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecC
Confidence 6777888999999999874 3688999888 7888899999766544332 1112333334443454334
Q ss_pred ccccCCCCHHhHH-HHHH-cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHC-CCCEEEEeCC-
Q 007518 146 GILARRDQKHHMD-ALSE-HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKN-HKDVLVVVGS- 221 (600)
Q Consensus 146 GILarr~~~~h~~-~l~~-~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN-~~~V~Vv~dP- 221 (600)
|. ..++.+. .++. ..-+.+|.|+|+++|-.. . +.+++. -.+++++.+. -+-| +++-+
T Consensus 351 ~~----~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~--~-----~~~~~a-------~~l~~~~~~~~~KPv-v~~~~g 411 (447)
T TIGR02717 351 GD----ATPERYAKALKTVAEDENVDGVVVVLTPTAM--T-----DPEEVA-------KGIIEGAKKSNEKPV-VAGFMG 411 (447)
T ss_pred CC----CCHHHHHHHHHHHHcCCCCCEEEEEccCCcc--C-----CHHHHH-------HHHHHHHHhcCCCcE-EEEecC
Confidence 43 2233332 2332 223569999999986421 1 112222 2344444443 4555 33433
Q ss_pred -CCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHhhh
Q 007518 222 -EDYPALLEFLKG-NQDDQQFRRKLAWKAFQHVASY 255 (600)
Q Consensus 222 -~DY~~vl~eL~~-G~~s~~~R~~LA~kAF~~TA~Y 255 (600)
..++...+.|++ |-.... --+-|.+||.+...|
T Consensus 412 g~~~~~~~~~L~~~Gip~f~-~p~~A~~al~~~~~~ 446 (447)
T TIGR02717 412 GKSVDPAKRILEENGIPNYT-FPERAVKALSALYRY 446 (447)
T ss_pred CccHHHHHHHHHhCCCCccC-CHHHHHHHHHHHHhh
Confidence 466667666765 422221 122388888887766
No 73
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=48.08 E-value=45 Score=35.04 Aligned_cols=39 Identities=21% Similarity=0.208 Sum_probs=25.7
Q ss_pred HHHHHC-CCCEEEEeCCCCHHHHHHHHh---CCCCCHHHHHHH
Q 007518 206 RAAAKN-HKDVLVVVGSEDYPALLEFLK---GNQDDQQFRRKL 244 (600)
Q Consensus 206 RAAAKN-~~~V~Vv~dP~DY~~vl~eL~---~G~~s~~~R~~L 244 (600)
+.++|+ ...|.+.++|++|...+...- .-.+|.|.|+|.
T Consensus 116 ~~~~~~~lp~~~~~~~~~~~~~~l~~~~~~~~~~~t~ed~~r~ 158 (320)
T TIGR01686 116 RANVKITLPVKTLLCDPAELAAILLFLNELLPLANTKEDRIRA 158 (320)
T ss_pred HHHHHHHCCCCccCCChHHHHHHhcccccccCccCCHHHHHHH
Confidence 444554 566899999999977654432 146777776654
No 74
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.95 E-value=69 Score=30.93 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=29.7
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+.+++||+.....=-..+++.|.+.|++++.+.-+.+.++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 44 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE 44 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4578999887443336789999999999999876554443
No 75
>PRK05693 short chain dehydrogenase; Provisional
Probab=47.84 E-value=1.1e+02 Score=30.34 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=27.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
|++||+....-=-..+++.|.+.|++++.+.-+..-+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~ 39 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE 39 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888776443335788999999999999876655444
No 76
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=47.68 E-value=29 Score=35.89 Aligned_cols=41 Identities=17% Similarity=0.419 Sum_probs=30.0
Q ss_pred EEEEEec-----CcccHHHHHHHHHHcCcEE--EEechhHHHHHHCCCe
Q 007518 77 QALISLS-----DKKDLASLGIGLQELGYTI--VSTGGTATSLENAGVS 118 (600)
Q Consensus 77 rALISVs-----DK~glv~~Ak~L~~lGfeI--iATgGTAk~L~e~GI~ 118 (600)
|+|++++ .-.-.+.+++.|.+ |+++ ++|+...+++++.|++
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~ 48 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFK 48 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCc
Confidence 3566665 23567899999999 9665 6677777777888887
No 77
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=47.66 E-value=63 Score=31.15 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=27.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
+++||+.....=-..+++.|.+.|++++.+.-+...+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~ 40 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAA 40 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHH
Confidence 4678877655444788999999999999886555443
No 78
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=47.64 E-value=35 Score=35.31 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCccC-ceEEeecccccCCccchHHHHHHCCCe
Q 007518 490 EFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVK-GAALASDAFFPFAWKDAVEEACENGIG 565 (600)
Q Consensus 490 ~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~-GavlASDAFFPF~~~D~ve~Aa~aGi~ 565 (600)
.-|+++++|||| |++||+|.|.|...---+++-+...+.++ -+|-.|. ++-..|.++|+.
T Consensus 10 ~aa~~A~~~V~~--------gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~--------~t~~~a~~~Gip 70 (228)
T PRK13978 10 MTLNDVLSQING--------DMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSN--------KIAFLAKELGIK 70 (228)
T ss_pred HHHHHHHHhCCC--------CCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcH--------HHHHHHHHcCCc
Confidence 678999998865 78999999988773322444333322232 1122221 455666677876
No 79
>PRK06128 oxidoreductase; Provisional
Probab=47.12 E-value=1.9e+02 Score=29.42 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=25.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiAT 105 (600)
|++||+....-=-..+|+.|.+.|++++.+
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~ 85 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALN 85 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEE
Confidence 689999987655578999999999999865
No 80
>PRK05867 short chain dehydrogenase; Provisional
Probab=46.95 E-value=66 Score=31.47 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+++.|.+.|++++.++-+.+.+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 48 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEK 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 578888876555578899999999999988776655544
No 81
>PRK06181 short chain dehydrogenase; Provisional
Probab=46.84 E-value=83 Score=30.84 Aligned_cols=129 Identities=17% Similarity=0.147 Sum_probs=65.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
+++||+....-=-..+++.|.+.|++++.+..+..-+++. ..++.+ .++++.+. -+=+. +++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~------~~~l~~----~~~~~~~~-----~~Dl~---~~~ 63 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASL------AQELAD----HGGEALVV-----PTDVS---DAE 63 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH------HHHHHh----cCCcEEEE-----EccCC---CHH
Confidence 3567766544333678899999999999998775544321 011110 12222221 11122 223
Q ss_pred hHHHHHH---cCCCceeEEEEeccCcHHhhhcCCCC-Chhhhhhccc---cchHHHHHHHH----HCCCCEEEEeCCCCH
Q 007518 156 HMDALSE---HGIGTFDLVVVNLYPFYDKVTSAGGI-DFEDGIENID---IGGPAMIRAAA----KNHKDVLVVVGSEDY 224 (600)
Q Consensus 156 h~~~l~~---~~I~~IDlVVVNLYPFe~tv~~~~~~-~~ee~IEnID---IGGpsmiRAAA----KN~~~V~Vv~dP~DY 224 (600)
.++++-+ ....++|.||.|--++...-.. .. +.++..+.++ +|---|++++. ++..++.++++..-|
T Consensus 64 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~--~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~ 141 (263)
T PRK06181 64 ACERLIEAAVARFGGIDILVNNAGITMWSRFD--ELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGL 141 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccccchh--ccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccccc
Confidence 2222211 1246899999997655432111 22 4444433333 34444556664 344567777776544
No 82
>PRK08303 short chain dehydrogenase; Provisional
Probab=46.48 E-value=1.8e+02 Score=30.23 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=25.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+++||+....-=-..+|+.|.+.|+.++.+.-
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence 57888887664457889999999999988753
No 83
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=46.31 E-value=1.2e+02 Score=29.99 Aligned_cols=31 Identities=32% Similarity=0.406 Sum_probs=25.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
|++||+....-=-..+|+.|.+.|++++.++
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 6789988876555788999999999999764
No 84
>TIGR00160 MGSA methylglyoxal synthase. Methylglyoxal synthase (MGS) generates methylglyoxal (MG), a toxic metabolite (that may also be a regulatory metabolite and) that is detoxified, prinicipally, through a pathway involving glutathione and glyoxylase I. Totemeyer, et al. (MUID:98149311) propose that, during a loss of control over carbon flux, with accumulation of phosphorylated sugars and depletion of phosphate, as might happen during a rapid shift to a richer medium, MGS aids the cell by converting some dihydroxyacetone phosphate (DHAP) to MG and phosphate. This is therefore an alternative to triosephosphate isomerase and the remainder of the glycolytic pathway for the disposal of DHAP during the stress of a sudden increase in available sugars.
Probab=46.02 E-value=23 Score=34.43 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=70.8
Q ss_pred EEEEEec-CcccHHHHHHHHHHc--CcEEEEechhHHHHHH-CCCeeEEecccCCCCCCCCCcccccccccccccccCCC
Q 007518 77 QALISLS-DKKDLASLGIGLQEL--GYTIVSTGGTATSLEN-AGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRD 152 (600)
Q Consensus 77 rALISVs-DK~glv~~Ak~L~~l--GfeIiATgGTAk~L~e-~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~ 152 (600)
-|||.=- -|..+++|++.-.+. +++|+|||-|.+.|++ -|++|+.... -=.||
T Consensus 5 IALIAHD~kK~~l~~f~~~~~~~L~~h~L~ATgTTG~~i~~~tgL~V~~~~S-----------------GplGG------ 61 (143)
T TIGR00160 5 IALIAHDKKKQDLVNFVQQHKPLLSQHDLYATGTTGNLISRATGLNINAMLS-----------------GPMGG------ 61 (143)
T ss_pred EEEEecccchHHHHHHHHHHHHHHcCCCEEECccHHHHHHHHHCCCeEEecc-----------------CCccH------
Confidence 3555443 389999999887663 8999999999999988 3444432221 11222
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 007518 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL 231 (600)
+..+.++-.. +.||+||.=--|....=.. .+ | -+|+|.+.= .+|-+-|+++-=+-++..+
T Consensus 62 -DqQIga~Ia~--g~id~vIFf~DPl~~~phe---pD---------i--~aLlRlc~v--~nIP~AtN~aTA~~li~~~ 121 (143)
T TIGR00160 62 -DQQIGALIAE--GKIDAVIFFWDPLNAQPHE---PD---------V--KALLRLCTV--WNIPLATNVATADFLIKSP 121 (143)
T ss_pred -HHHHHHHHHh--CCCCEEEEecCCCCCCCCC---cC---------H--HHHHHHHHh--hCcccccCHHHHHHHHhCc
Confidence 2334333333 4789999988887542222 22 1 378888754 5677777777655555544
No 85
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=45.72 E-value=49 Score=34.90 Aligned_cols=103 Identities=23% Similarity=0.311 Sum_probs=64.2
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH--------CCCeeEEecccCCCCCCCCCccccccccccc
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN--------AGVSVTKVEQLTCFPEMLDGRVKTLHPNIHG 145 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e--------~GI~v~~VskiTGfPEildGRVKTLHPkIhG 145 (600)
+.+++||+....-=-.++|+.|.+.|+.++=+.-+.+.|.+ +|+.|..+.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~---------------------- 62 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIP---------------------- 62 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEE----------------------
Confidence 45689998874333378999999999999999999886665 344443222
Q ss_pred ccccCCCCHHhHHHHHHcCCCceeEEEEec-----cCcHHhhhcCCCCChhhhhhccccchHHHH
Q 007518 146 GILARRDQKHHMDALSEHGIGTFDLVVVNL-----YPFYDKVTSAGGIDFEDGIENIDIGGPAMI 205 (600)
Q Consensus 146 GILarr~~~~h~~~l~~~~I~~IDlVVVNL-----YPFe~tv~~~~~~~~ee~IEnIDIGGpsmi 205 (600)
-=|++.+.-+.+.+--.....+||+.|-|- =||.+ .++++..|.|++==-+++
T Consensus 63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~-------~~~~~~~~mi~lN~~a~~ 120 (265)
T COG0300 63 ADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE-------LSLDEEEEMIQLNILALT 120 (265)
T ss_pred CcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCccchhh-------CChHHHHHHHHHHHHHHH
Confidence 123333333333322233445799999883 35654 356677776665444433
No 86
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=44.86 E-value=55 Score=31.35 Aligned_cols=90 Identities=22% Similarity=0.309 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCeEEEEccCCcccccccCCHHHHHHHHHhcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccE
Q 007518 333 DAAWNCVSEFKNPTCVIVKHTNPCGVASRDDILEAYKLAVKADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMF 412 (600)
Q Consensus 333 daA~~lv~ef~~pa~vivKH~nPCGvA~~~~l~eAy~~A~~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F 412 (600)
+.+.+++.+ ..++||+.|..+ .=...+.-+..-|.. +..+|.+--|..|| -+.|..+.|-.+... =
T Consensus 2 ~~~~~~L~e-~~~S~Vv~~~~~-i~t~~~rGv~pL~~l-l~~~~~~l~ga~va-DKvvGKAAA~lmv~g----------g 67 (134)
T PF08973_consen 2 EEAIKLLHE-ENYSCVVLKDGE-IRTSDGRGVKPLYDL-LNEEPEFLKGAVVA-DKVVGKAAAALMVLG----------G 67 (134)
T ss_dssp -HHHHHHHH-TT-SEEEESSSE-EEEE--STTHHHHHH-HHH-S---TT-EEE-EEEE-HHHHHHHHHH-----------
T ss_pred HHHHHHHHh-CCceEEEEeCCE-EEEeCCCChHHHHHH-HHhChhhhhcccHH-HHHHhHHHHHHHHHh----------c
Confidence 456777777 579999999998 666677788888877 89999887777766 467888888887654 2
Q ss_pred EEEEEcCCCCHHHHHHHhhccCCceE
Q 007518 413 YEIVVAPSYTEEGLEILRGKSKNLRI 438 (600)
Q Consensus 413 ~EvIIAP~f~~eAleiL~~K~KnlRl 438 (600)
+.=|=|.=.|+.|+++|.+. ++++
T Consensus 68 v~~vyA~viS~~Al~~L~~~--gI~v 91 (134)
T PF08973_consen 68 VKEVYADVISEPALDLLEEA--GIKV 91 (134)
T ss_dssp -SEEEEEEEEHHHHHHHHHT--T--E
T ss_pred HHHHHHHHHhHHHHHHHHHc--CCce
Confidence 33355666699999999987 5553
No 87
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=44.69 E-value=29 Score=31.04 Aligned_cols=33 Identities=6% Similarity=0.132 Sum_probs=27.5
Q ss_pred CeEEecCCCCCCchHHHHHHHhcCcEEEecCCcc
Q 007518 564 IGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRH 597 (600)
Q Consensus 564 i~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RH 597 (600)
+..++..||+.. +++++.|+++++.||..|.|.
T Consensus 81 ~~~~~~~g~~~~-~~I~~~a~~~~~dlIV~Gs~g 113 (146)
T cd01989 81 CEDVVLEDDDVA-KAIVEYVADHGITKLVMGASS 113 (146)
T ss_pred EEEEEEeCCcHH-HHHHHHHHHcCCCEEEEeccC
Confidence 467888888764 679999999999999999763
No 88
>PRK05650 short chain dehydrogenase; Provisional
Probab=44.36 E-value=1.6e+02 Score=29.22 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=25.3
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 77 rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
++||+...-.=-..+++.|.+.|++++.+.-....++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~ 38 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGE 38 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5666665433336788999999999988865544433
No 89
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=44.35 E-value=18 Score=40.04 Aligned_cols=39 Identities=33% Similarity=0.524 Sum_probs=31.6
Q ss_pred chHHHHHHCCCeEEe-------cCC--CCCCchHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIA-------EPG--GSIRDGDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aII-------QPG--GSiRD~evI~aa~e~giaMvf 592 (600)
|.++++++.||++|| +.| |....++++++|.++||.++-
T Consensus 79 ~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 79 QVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred HHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 899999999999886 544 233347999999999999873
No 90
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.26 E-value=67 Score=31.23 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=28.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
+++||+....-=-..+++.|.+.|++++.+.-...-+
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGA 44 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHH
Confidence 5789988765444678999999999999886655333
No 91
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=43.96 E-value=89 Score=30.52 Aligned_cols=39 Identities=33% Similarity=0.220 Sum_probs=30.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++++.++-+...+++
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~ 48 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL 48 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence 568888776544478899999999999999877655544
No 92
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=43.62 E-value=32 Score=36.75 Aligned_cols=81 Identities=22% Similarity=0.070 Sum_probs=62.7
Q ss_pred ccccccccCCCCCCchhhcHHHHHHHHHhcCCCeEEEEccCCcccccccC---CHHHHHHHHHhcCCCCcCCCEEEEccc
Q 007518 313 IATAIQHHGKEMSYNNYLDADAAWNCVSEFKNPTCVIVKHTNPCGVASRD---DILEAYKLAVKADPVSAFGGIVAFNVE 389 (600)
Q Consensus 313 ~~~~~ql~GKeLSYNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~---~l~eAy~~A~~~DpvSaFGGIVA~Nr~ 389 (600)
....+.|.|++ +||..|+-.|.+.+.+ ..|..|+|+|..+-|-..+. +...++...... |...|. +|..
T Consensus 144 ~fELe~Ltg~~--~~~~~da~~aa~~L~~-~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~~~----~~Gt 215 (281)
T COG2240 144 IFELEILTGKP--LNTLDDAVKAARKLGA-DGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVPFI----PNGT 215 (281)
T ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhh-cCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCCCC----CCCc
Confidence 35578899987 9999999888888888 67999999999997764443 444555555665 777776 8888
Q ss_pred cCHHHHHHHhcc
Q 007518 390 VDEALAKELREY 401 (600)
Q Consensus 390 vD~~tA~~i~~~ 401 (600)
=|.-+|..+.++
T Consensus 216 GDL~sallla~l 227 (281)
T COG2240 216 GDLFSALLLARL 227 (281)
T ss_pred hHHHHHHHHHHH
Confidence 899888888765
No 93
>PRK05866 short chain dehydrogenase; Provisional
Probab=42.88 E-value=63 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=28.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++|+.++-....|++
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA 79 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 578888764333368899999999999998766555543
No 94
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=42.17 E-value=51 Score=29.21 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=31.4
Q ss_pred CcccHHHHHHHHHHcCcE--EEEechhHHHHHHCCCeeEEecc
Q 007518 84 DKKDLASLGIGLQELGYT--IVSTGGTATSLENAGVSVTKVEQ 124 (600)
Q Consensus 84 DK~glv~~Ak~L~~lGfe--IiATgGTAk~L~e~GI~v~~Vsk 124 (600)
|=.=++.+++.|.+.|++ +.+.++-.+.+++.|++...+..
T Consensus 11 hv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 11 HVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPG 53 (139)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSS
T ss_pred HHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecC
Confidence 333467899999999988 56668888889999999988765
No 95
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=41.61 E-value=1.1e+02 Score=29.40 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+...--=-..+++.|.+.|++++.+.-+..-++
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~ 45 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLK 45 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888877543346688999999999998876544443
No 96
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=40.77 E-value=3.6e+02 Score=28.76 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=64.4
Q ss_pred HHHHHcCcE---EEEechhHHHHHHCCCeeEE-ecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHH--HcCCC
Q 007518 93 IGLQELGYT---IVSTGGTATSLENAGVSVTK-VEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALS--EHGIG 166 (600)
Q Consensus 93 k~L~~lGfe---IiATgGTAk~L~e~GI~v~~-VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~--~~~I~ 166 (600)
+.+.++|++ +.++..+..+-++.|..... +++. ++-+-.| |-. ..+-++++. +.+..
T Consensus 52 ~~a~~~g~~~i~L~t~~~~~~fYek~GF~~~~~~~~~--~~~~~~g------------i~~---~~~~~~~~~~~~~~~~ 114 (297)
T cd02169 52 NKAYEEGIFHLFLFTKPKNAKFFRGLGFKELANASDE--AVLLENG------------KPG---IEDYLKNLPKPDQPGK 114 (297)
T ss_pred HHHHHCCCCEEEEEEcccHHHHHHHCCCEEecccCCe--eeEecCC------------chH---HHHHHHHHHhhccCCC
Confidence 444556655 56666667788888886443 3331 0111111 111 223344442 35556
Q ss_pred ceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhCCCCCHHHHHHHHH
Q 007518 167 TFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAW 246 (600)
Q Consensus 167 ~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~G~~s~~~R~~LA~ 246 (600)
.|--+|.++-||-. |=-.|+|.|++.+.-+.|+.-|. +....+.+.|.++..
T Consensus 115 ~~~~~~~~FDPiH~-------------------GHl~ii~~a~~~~d~~~V~i~~~---------~~~~~~~e~R~~ml~ 166 (297)
T cd02169 115 KIAAIVMNANPFTL-------------------GHRYLVEKAAAENDWVHLFVVSE---------DKSLFSFADRFKLVK 166 (297)
T ss_pred ceEEEEecCCCCch-------------------HHHHHHHHHHhhCCeEEEEEEcC---------CCCCCCHHHHHHHHH
Confidence 77777888877732 33456777777777777776664 223467777777777
Q ss_pred HHHH
Q 007518 247 KAFQ 250 (600)
Q Consensus 247 kAF~ 250 (600)
+|+.
T Consensus 167 ~ai~ 170 (297)
T cd02169 167 KGTK 170 (297)
T ss_pred HHhC
Confidence 6655
No 97
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=40.65 E-value=1.1e+02 Score=29.16 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=69.1
Q ss_pred cCcccHHHHHHHHHH------cCcEEEEe-chhHHHHHHCCCeeEEe-cccCCCCCCCCCcccccccc--cccccccCCC
Q 007518 83 SDKKDLASLGIGLQE------LGYTIVST-GGTATSLENAGVSVTKV-EQLTCFPEMLDGRVKTLHPN--IHGGILARRD 152 (600)
Q Consensus 83 sDK~glv~~Ak~L~~------lGfeIiAT-gGTAk~L~e~GI~v~~V-skiTGfPEildGRVKTLHPk--IhGGILarr~ 152 (600)
..+.++.-|.+.+.+ .+..+++- ..|++.|++.|+++..+ ...+ .+|=.+.+... -..=||.-+.
T Consensus 56 tS~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~~~~~~-----~~~L~~~i~~~~~~~~~il~~~g 130 (239)
T cd06578 56 TSPNAVEAFFEALEELGLRALAGLKIAAVGPKTAEALREAGLTADFVPEEGD-----SEGLLELLELQDGKGKRILRPRG 130 (239)
T ss_pred ECHHHHHHHHHHHHhhCCccccCCEEEEECHHHHHHHHHcCCCceeCCCccC-----HHHHHHHHHhcCCCCCEEEEEcC
Confidence 345667777777653 56777777 68999999999988876 2222 12333333332 2222333332
Q ss_pred C---HHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHH
Q 007518 153 Q---KHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLE 229 (600)
Q Consensus 153 ~---~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~ 229 (600)
. +.-.+.|+++|+..+.+++-..-|-..+ ....+.+++ ...+++++++|+..+.+++
T Consensus 131 ~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~------~~~~~~l~~--------------~~~~~iiftS~~~v~~f~~ 190 (239)
T cd06578 131 GRAREDLAEALRERGAEVDEVEVYRTVPPDLD------AELLELLEE--------------GAIDAVLFTSPSTVRNLLE 190 (239)
T ss_pred cchhHHHHHHHHHCCCEEEEEEEEEEECCCCc------HHHHHHHHc--------------CCCcEEEEeCHHHHHHHHH
Confidence 2 3444557777775444443322221100 011222222 2233899999999888888
Q ss_pred HHh
Q 007518 230 FLK 232 (600)
Q Consensus 230 eL~ 232 (600)
.+.
T Consensus 191 ~~~ 193 (239)
T cd06578 191 LLG 193 (239)
T ss_pred HHh
Confidence 774
No 98
>PRK04247 hypothetical protein; Provisional
Probab=40.24 E-value=33 Score=35.77 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.9
Q ss_pred EEEEcCCCCHHHHHHHhhccCCceEEEecC
Q 007518 414 EIVVAPSYTEEGLEILRGKSKNLRILETKK 443 (600)
Q Consensus 414 EvIIAP~f~~eAleiL~~K~KnlRlL~~~~ 443 (600)
=|+|||+|++.|+++|+++ +|+-+.+.+
T Consensus 208 GilvAp~i~~~A~~ll~~~--Gle~~~l~p 235 (238)
T PRK04247 208 GILVAPSITDRARRLLEKE--GLEFVKLEP 235 (238)
T ss_pred EEEECCcCCHHHHHHHHHc--CCeEEEecC
Confidence 3689999999999999877 898887764
No 99
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.42 E-value=92 Score=32.10 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCcEE-EEec---hh-HHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHHH
Q 007518 88 LASLGIGLQELGYTI-VSTG---GT-ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSE 162 (600)
Q Consensus 88 lv~~Ak~L~~lGfeI-iATg---GT-Ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~ 162 (600)
-+.||+.|.+.|+++ +.+. +. .+.|++.|.+|..+++-+++ ..|..+-.+.+++
T Consensus 20 cl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~---------------------~~d~~~~~~~l~~ 78 (279)
T TIGR03590 20 CLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSR---------------------YDDALELINLLEE 78 (279)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCch---------------------hhhHHHHHHHHHh
Confidence 578999998888875 3332 22 47889999999888775431 1122222333444
Q ss_pred cCCCceeEEEEeccCcHH
Q 007518 163 HGIGTFDLVVVNLYPFYD 180 (600)
Q Consensus 163 ~~I~~IDlVVVNLYPFe~ 180 (600)
. ..|+|||.-|-|..
T Consensus 79 ~---~~d~vV~D~y~~~~ 93 (279)
T TIGR03590 79 E---KFDILIVDHYGLDA 93 (279)
T ss_pred c---CCCEEEEcCCCCCH
Confidence 3 56999999996644
No 100
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=38.67 E-value=87 Score=31.11 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=29.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+++.|.+.|+.++.+.-+...++
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~ 48 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE 48 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888877654448899999999999999876554443
No 101
>PRK06842 fumarate hydratase; Provisional
Probab=38.60 E-value=48 Score=33.43 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHCCCeEEecCCCCCCchHHHHHHHhcCcE-EEecC
Q 007518 558 EACENGIGVIAEPGGSIRDGDAIDCCNKYGVA-LLLTS 594 (600)
Q Consensus 558 ~Aa~aGi~aIIQPGGSiRD~evI~aa~e~gia-MvfTg 594 (600)
...+.|++++|--||- ++|++++|.+||-. +.++|
T Consensus 90 ~l~~~Gv~~~IGKG~r--~~~~~~a~k~~gaVYl~~~G 125 (185)
T PRK06842 90 RLLDIGLKGMIGKGAR--SDEVIESIKKNKAVYFGAIG 125 (185)
T ss_pred HHHHCCCeEEEECCCC--CHHHHHHHHHcCEEEEEcCC
Confidence 3345799999999995 89999999999865 45554
No 102
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=37.66 E-value=42 Score=36.30 Aligned_cols=109 Identities=27% Similarity=0.306 Sum_probs=74.3
Q ss_pred cceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHc--CCc--cCceEEeeccc
Q 007518 472 QFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKA--GDE--VKGAALASDAF 547 (600)
Q Consensus 472 ~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA--~~~--~~GavlASDAF 547 (600)
.++..-.++.+---+-|+.-||++++-...+|.|++|...--|++.|. .+..|.+|| .|. .=|.++|--.
T Consensus 103 ~~~qL~GKeLSyNN~lD~daA~~lv~ef~~pa~vivKH~nPCGvA~~~-----~~~~Ay~kA~~~Dp~SaFGGIva~Nr- 176 (311)
T smart00798 103 TAKQLQGKELSYNNILDADAALELVKEFDEPACVIVKHANPCGVAVGD-----TLAEAYRKAYAADPVSAFGGIIAFNR- 176 (311)
T ss_pred cchhhcCcccCCcchhchHHHHHHHHhcCCCcEEEEecCCcceeecCC-----CHHHHHHHHHhcCCccccCCEEEECC-
Confidence 456666777888899999999999999999999999999999999994 345666666 333 3366665432
Q ss_pred ccCCccchHHHHHHCCCeEEecCCCCCCchHHHHH-HHhcCcEEE
Q 007518 548 FPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDC-CNKYGVALL 591 (600)
Q Consensus 548 FPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~a-a~e~giaMv 591 (600)
|.. .+.-+...+.=+..||.|+=+ +|..+. ..+-|+-++
T Consensus 177 -~vd-~~~A~~i~~~F~EviiAP~f~---~eAleiL~~KKnlRll 216 (311)
T smart00798 177 -PVD-EETAEAINKIFLEVIIAPDFD---EEALEILSKKKNLRLL 216 (311)
T ss_pred -ccC-HHHHHHHHhheEEEEEcCCCC---HHHHHHHhhCCCEEEE
Confidence 233 234444445557788999754 444443 244456555
No 103
>PRK12744 short chain dehydrogenase; Provisional
Probab=37.53 E-value=4e+02 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=23.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVST 105 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiAT 105 (600)
+++||+.....=-..+|+.|.+.|++++..
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 578998876555578999999999995543
No 104
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=37.36 E-value=2.1e+02 Score=27.58 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+++.|.+.|++++.+.-+..-++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~ 42 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAA 42 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 46888776433337899999999999998865544443
No 105
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=37.33 E-value=77 Score=32.66 Aligned_cols=84 Identities=14% Similarity=0.060 Sum_probs=52.6
Q ss_pred cccHHHHHHHHHHcCcEEEE-ec-------hhHHHHHH-CCCeeEEecc--cCCCCCCCCCcccccccccccccccCCCC
Q 007518 85 KKDLASLGIGLQELGYTIVS-TG-------GTATSLEN-AGVSVTKVEQ--LTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (600)
Q Consensus 85 K~glv~~Ak~L~~lGfeIiA-Tg-------GTAk~L~e-~GI~v~~Vsk--iTGfPEildGRVKTLHPkIhGGILarr~~ 153 (600)
+.|+.++.+.|.+.|++|+= |+ .|++.|.+ .|+|...-.. ++|-..-=..+...+. -+|=.+.-.|+
T Consensus 116 ~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd~~~K~~K~~~l~--~~~i~I~IGDs 193 (237)
T PRK11009 116 KEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGDKPGQYTKTQWLK--KKNIRIFYGDS 193 (237)
T ss_pred hHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCCCCCCCCHHHHHH--hcCCeEEEcCC
Confidence 46699999999999999874 43 37888876 9996432111 1221000011122221 13335667799
Q ss_pred HHhHHHHHHcCCCceeE
Q 007518 154 KHHMDALSEHGIGTFDL 170 (600)
Q Consensus 154 ~~h~~~l~~~~I~~IDl 170 (600)
..|+...++.||..|=+
T Consensus 194 ~~Di~aA~~AGi~~I~v 210 (237)
T PRK11009 194 DNDITAAREAGARGIRI 210 (237)
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 99999999999998743
No 106
>PRK09291 short chain dehydrogenase; Provisional
Probab=37.28 E-value=1.5e+02 Score=28.68 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=25.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk 110 (600)
+++||+.....=-..+++.|.+.|++++++.-...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~ 37 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAP 37 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788777433335678999999999999866443
No 107
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=37.12 E-value=1.7e+02 Score=28.46 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHH------HcCcEEEEe-chhHHHHHHCCCeeEEecccCCCCCCCCCcccccccc-cc-cccccCCC--
Q 007518 84 DKKDLASLGIGLQ------ELGYTIVST-GGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPN-IH-GGILARRD-- 152 (600)
Q Consensus 84 DK~glv~~Ak~L~------~lGfeIiAT-gGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPk-Ih-GGILarr~-- 152 (600)
.+.++.-|.+.|. -.+..+++- ..|++.|++.|+++..+.+- + -.+|=++.|... ++ .-||.-|.
T Consensus 60 S~~av~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~~~~~~~-~---~~~~l~~~l~~~~~~~~~ili~~~~~ 135 (249)
T PRK05928 60 SKNAVEFLLSALKKKKLKWPKNKKYAAIGEKTALALKKLGGKVVFVPED-G---ESSELLLELPELLLKGKRVLYLRGNG 135 (249)
T ss_pred CHHHHHHHHHHHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCccccCCC-C---cChHHHHhChhhhcCCCEEEEECCCC
Confidence 3566677777665 236678887 68999999999987766432 1 223445555544 22 23444443
Q ss_pred -CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHH
Q 007518 153 -QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 153 -~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL 231 (600)
.+.-.+.|+++|+. ++.+-+|- ++.. ....++..+ ....+.-+++|+++|.-.+.+++.+
T Consensus 136 ~~~~l~~~L~~~G~~---v~~~~~Y~---~~~~--~~~~~~~~~-----------~~~~~~~d~ivftS~~~v~~~~~~~ 196 (249)
T PRK05928 136 GREVLGDTLEERGAE---VDECEVYE---RVPP--KLDGAELLA-----------RLQSGEVDAVIFTSPSTVRAFFSLA 196 (249)
T ss_pred CHHHHHHHHHHCCCE---EeEEEEEE---eeCC--CCChHHHHH-----------HHHhCCCCEEEECCHHHHHHHHHHh
Confidence 22334557788875 44444552 2211 111111111 1114677999999999988888877
Q ss_pred h
Q 007518 232 K 232 (600)
Q Consensus 232 ~ 232 (600)
.
T Consensus 197 ~ 197 (249)
T PRK05928 197 P 197 (249)
T ss_pred c
Confidence 4
No 108
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=37.01 E-value=4e+02 Score=25.80 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=24.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk 110 (600)
+++||+...-.=-..+++.|.+.|++++.+.....
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~ 35 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEE 35 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35677665433346788999999999998865443
No 109
>PLN02448 UDP-glycosyltransferase family protein
Probab=36.98 E-value=1e+02 Score=34.30 Aligned_cols=104 Identities=11% Similarity=0.124 Sum_probs=61.4
Q ss_pred CCCcEEEEEec---CcccHHHHHHHHHHc--CcE--EEEechhHHHHHHC----CCeeEEecccCCCCCCCCCccccccc
Q 007518 73 QANKQALISLS---DKKDLASLGIGLQEL--GYT--IVSTGGTATSLENA----GVSVTKVEQLTCFPEMLDGRVKTLHP 141 (600)
Q Consensus 73 ~~i~rALISVs---DK~glv~~Ak~L~~l--Gfe--IiATgGTAk~L~e~----GI~v~~VskiTGfPEildGRVKTLHP 141 (600)
+...-+++..- +=.=+++||+.|... |+. +++|....+.++.. ||....+.+ |.|+.++.. ..+ +
T Consensus 9 ~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~--~~p~~~~~~-~~~-~ 84 (459)
T PLN02448 9 TSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPN--VIPSELVRA-ADF-P 84 (459)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCC--CCCCccccc-cCH-H
Confidence 45555666654 777789999999987 754 67888888888885 888777765 455544311 100 1
Q ss_pred ccccccccCCCCHHhHHHH-HHcCCCceeEEEEecc-CcHHhhh
Q 007518 142 NIHGGILARRDQKHHMDAL-SEHGIGTFDLVVVNLY-PFYDKVT 183 (600)
Q Consensus 142 kIhGGILarr~~~~h~~~l-~~~~I~~IDlVVVNLY-PFe~tv~ 183 (600)
......+ +....+++++ ++.. .++|+||.+++ ++-..++
T Consensus 85 ~~~~~~~--~~~~~~~~~~l~~~~-~~~~~VI~D~~~~wa~~vA 125 (459)
T PLN02448 85 GFLEAVM--TKMEAPFEQLLDRLE-PPVTAIVADTYLFWAVGVG 125 (459)
T ss_pred HHHHHHH--HHhHHHHHHHHHhcC-CCcEEEEECCccHHHHHHH
Confidence 1111111 1123344443 3333 67899999844 4444444
No 110
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=36.66 E-value=50 Score=34.07 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=28.8
Q ss_pred hHHHHHHCCC------eEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 555 AVEEACENGI------GVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 555 ~ve~Aa~aGi------~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
+|+.|--+|. .-|+-+||+.|-+|+.++|++||++|+
T Consensus 166 svdLa~lAGl~P~~vicEil~~~~~~~~~~~~~fA~~~~l~~i 208 (219)
T PRK05773 166 SIALAQAAGLEPSAVIAEMLDEKLSLSKEKAKKIAKNLGFPLV 208 (219)
T ss_pred HHHHHHHcCCCccEEEEEEeCCCCCcCHHHHHHHHHHcCCcEE
Confidence 3555555554 346678999999999999999999995
No 111
>PRK09134 short chain dehydrogenase; Provisional
Probab=36.50 E-value=4e+02 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=24.8
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+.+++||+....-=-..+++.|.+.|+.++.+..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 3457999887533335788999999999987543
No 112
>PRK05993 short chain dehydrogenase; Provisional
Probab=36.40 E-value=4.3e+02 Score=26.50 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=28.4
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 75 i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
.+++||+....-=-..+|+.|.+.|++++.+.-....|+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~ 42 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA 42 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 357888887433235788999999999999876655444
No 113
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=36.31 E-value=13 Score=30.94 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCCchHHHHHHHhcCc
Q 007518 573 SIRDGDAIDCCNKYGV 588 (600)
Q Consensus 573 SiRD~evI~aa~e~gi 588 (600)
|++|+|||+.|.+.|-
T Consensus 26 SV~~~eV~~YC~~~GW 41 (57)
T PF08727_consen 26 SVDSPEVREYCEEQGW 41 (57)
T ss_dssp HH--HHHHHHHHHHT-
T ss_pred hcCCHHHHHHHHHCCc
Confidence 7899999999999884
No 114
>PRK07985 oxidoreductase; Provisional
Probab=36.06 E-value=2.8e+02 Score=28.35 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=25.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
+++||+....-=-..+|+.|.+.|++++.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~ 80 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISY 80 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEec
Confidence 6899998865555789999999999998864
No 115
>PRK07856 short chain dehydrogenase; Provisional
Probab=36.02 E-value=1.7e+02 Score=28.62 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=25.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTA 109 (600)
+++||+....-=-..+++.|.+.|++++.+.-..
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5788887754434678899999999998886543
No 116
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=35.89 E-value=3.7e+02 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.5
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEe
Q 007518 75 NKQALISLSDKKDLASLGIGLQELGYTIVST 105 (600)
Q Consensus 75 i~rALISVsDK~glv~~Ak~L~~lGfeIiAT 105 (600)
++++||+....-=-..+++.|.+.|++++.+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGIN 32 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 4678888875433356899999999998765
No 117
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=35.52 E-value=49 Score=34.31 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=35.6
Q ss_pred cCCccchHHHHHHCCCeEEe--cCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 549 PFAWKDAVEEACENGIGVIA--EPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 549 PF~~~D~ve~Aa~aGi~aII--QPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
||...+......+.||.++| +-||+ --.|=|+||.++||+++.-.
T Consensus 176 Pfs~e~n~aL~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~ 222 (248)
T PRK08057 176 PFSLELERALLRQHRIDVVVTKNSGGA-GTEAKLEAARELGIPVVMIA 222 (248)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEe
Confidence 66655777777888999888 56888 77888899999999888754
No 118
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=35.45 E-value=1.4e+02 Score=31.39 Aligned_cols=98 Identities=18% Similarity=0.189 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcceEEEEEeCCeEEEecCCCCc--HHHHHHHHHHHcCCc--------cCceEEeecccccCCccchH---
Q 007518 490 EFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPN--RRESLRIAMKKAGDE--------VKGAALASDAFFPFAWKDAV--- 556 (600)
Q Consensus 490 ~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~s--RVds~~iA~~kA~~~--------~~GavlASDAFFPF~~~D~v--- 556 (600)
+|+|.....+ ++.. .+...|=||+=.++ --.+.+.|++.+..+ +.|..+--| .=||. -+.
T Consensus 1 ~~~~~~~~~~---~~~~-~~~~~i~IG~i~~~~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~-~~~~~--~a~~~~ 73 (377)
T cd06379 1 LFALLFLSLC---ARAG-CSPKTVNIGAVLSNKKHEQEFKEAVNAANVERHGSRKIKLNATTITHD-PNPIQ--TALSVC 73 (377)
T ss_pred CHHHHHHHHh---cccC-CCCcEEEEeEEecchhHHHHHHHHHHHHhhhhcCCcceeeccceEeec-CChhh--HHHHHH
Confidence 4788877776 2221 33445555554442 335678898888652 334322223 13444 222
Q ss_pred HHHHHCCCeEEe--cCCCCCC---chHHHHHHHhcCcEEEecC
Q 007518 557 EEACENGIGVIA--EPGGSIR---DGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 557 e~Aa~aGi~aII--QPGGSiR---D~evI~aa~e~giaMvfTg 594 (600)
+.+.+.||-+|| -|++|.. =.-+...|++++|+||..+
T Consensus 74 ~~Li~~~V~aii~~~~~ss~~~~~~~~v~~~~~~~~iP~Is~~ 116 (377)
T cd06379 74 EQLISNQVYAVIVSHPPTSNDHLTPTSVSYTAGFYRIPVVGIS 116 (377)
T ss_pred HHHhhcceEEEEEeCCCCCcccccHHHHHHHhhCCCCcEEecc
Confidence 334567999997 4545542 2245668999999999654
No 119
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.32 E-value=4.1e+02 Score=26.44 Aligned_cols=125 Identities=12% Similarity=0.098 Sum_probs=66.0
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEechhH---HHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccC
Q 007518 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVSTGGTA---TSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILAR 150 (600)
Q Consensus 76 ~rALISVsDK-~gl-v~~Ak~L~~lGfeIiATgGTA---k~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILar 150 (600)
|.+||+..-. .|| ..+|+.|.+.|+.++-+.-.. +.+++ +.+ + + |.+ + ++..=+.
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~-------l~~-----~-~-g~~---~--~~~~Dv~- 68 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKP-------LAE-----E-I-GCN---F--VSELDVT- 68 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHH-------HHH-----h-c-CCc---e--EEEccCC-
Confidence 5689988865 466 688999999999998764321 11222 000 0 0 211 1 1112222
Q ss_pred CCCHHhHHHHHH---cCCCceeEEEEeccCcHHh--hhcCCCCChhhhhhccccc---hHHHHHHHHHCC---CCEEEEe
Q 007518 151 RDQKHHMDALSE---HGIGTFDLVVVNLYPFYDK--VTSAGGIDFEDGIENIDIG---GPAMIRAAAKNH---KDVLVVV 219 (600)
Q Consensus 151 r~~~~h~~~l~~---~~I~~IDlVVVNLYPFe~t--v~~~~~~~~ee~IEnIDIG---GpsmiRAAAKN~---~~V~Vv~ 219 (600)
+++.++++-+ ...++||++|.|-.-.... .....+.++++.-+.+|+. =.-++|++.+-. .+++.++
T Consensus 69 --~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 69 --NPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred --CHHHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 3333333221 2346899999997533210 0110145677888888874 334566665433 4566666
Q ss_pred CCC
Q 007518 220 GSE 222 (600)
Q Consensus 220 dP~ 222 (600)
+..
T Consensus 147 S~~ 149 (260)
T PRK06603 147 YYG 149 (260)
T ss_pred cCc
Confidence 543
No 120
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.15 E-value=38 Score=37.29 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=37.6
Q ss_pred eEEeecccccCCccchHHHHHHCCCeEE-ecCC--CCCCch--HHHHHHHhcCcEE
Q 007518 540 AALASDAFFPFAWKDAVEEACENGIGVI-AEPG--GSIRDG--DAIDCCNKYGVAL 590 (600)
Q Consensus 540 avlASDAFFPF~~~D~ve~Aa~aGi~aI-IQPG--GSiRD~--evI~aa~e~giaM 590 (600)
.=|.-|--|-++ -.-.|+++|+.+| |-|| |+++++ +|+++|.++|+++
T Consensus 81 iPlvADIHFd~~---lAl~a~~~G~~~iRINPGNig~~~~~v~~vv~~ak~~~ipI 133 (360)
T PRK00366 81 VPLVADIHFDYR---LALAAAEAGADALRINPGNIGKRDERVREVVEAAKDYGIPI 133 (360)
T ss_pred CCEEEecCCCHH---HHHHHHHhCCCEEEECCCCCCchHHHHHHHHHHHHHCCCCE
Confidence 456668778766 4567889999988 8888 555554 8999999999997
No 121
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=35.05 E-value=2.2e+02 Score=27.97 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=26.6
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 75 i~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
-+++||+.....=-..+|+.|.+.|+.++.+.-
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 367899888766568899999999999987643
No 122
>PRK06138 short chain dehydrogenase; Provisional
Probab=35.04 E-value=2.2e+02 Score=27.48 Aligned_cols=39 Identities=13% Similarity=0.060 Sum_probs=29.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+...--=-..+++.|.+.|++++.+..+...+++
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 44 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAER 44 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHH
Confidence 468888875444478899999999999999876654443
No 123
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=35.00 E-value=3.9e+02 Score=29.24 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=21.3
Q ss_pred CCCcEEEEEec-----C----cccHHHHHHHHHHcCcEEEEe
Q 007518 73 QANKQALISLS-----D----KKDLASLGIGLQELGYTIVST 105 (600)
Q Consensus 73 ~~i~rALISVs-----D----K~glv~~Ak~L~~lGfeIiAT 105 (600)
.+.+|+++-+. . ...+.++++.|.+.|+++.-.
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vl 97 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVV 97 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45556655543 1 235778888998888887443
No 124
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=34.75 E-value=60 Score=33.20 Aligned_cols=73 Identities=15% Similarity=0.110 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHcCCc--cC----ceEEeecccccCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 522 RRESLRIAMKKAGDE--VK----GAALASDAFFPFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 522 RVds~~iA~~kA~~~--~~----GavlASDAFFPF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
-..+++.|++..++. +. ..+...|..-|..-...++.+++. +|.+||-|-+|--...+.+.|++++|+||.+.
T Consensus 19 ~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~ 98 (346)
T cd06330 19 ARNGAELAVEEINAAGGIGGRKIELVVRDEAGKPDEAIREARELVENEGVDMLIGLISSGVALAVAPVAEELKVFFIATD 98 (346)
T ss_pred HHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHhccCCcEEEcccchHHHHHHHHHHHHcCCeEEEcC
Confidence 456788888876532 12 234444444443322245555554 99999999888888899999999999999854
No 125
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.55 E-value=68 Score=31.61 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=16.3
Q ss_pred HHhHHHHHHcCCCceeEEEEeccCcH
Q 007518 154 KHHMDALSEHGIGTFDLVVVNLYPFY 179 (600)
Q Consensus 154 ~~h~~~l~~~~I~~IDlVVVNLYPFe 179 (600)
.++++++-+.| .|.||++-++++
T Consensus 85 ~e~~~~~~~~G---ad~vvigs~~l~ 107 (234)
T cd04732 85 LEDIERLLDLG---VSRVIIGTAAVK 107 (234)
T ss_pred HHHHHHHHHcC---CCEEEECchHHh
Confidence 56677766655 688888877764
No 126
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=34.35 E-value=85 Score=30.63 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=61.3
Q ss_pred HHHHHHHHHcCcEEEEechhHHHH--------HHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHH
Q 007518 89 ASLGIGLQELGYTIVSTGGTATSL--------ENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDAL 160 (600)
Q Consensus 89 v~~Ak~L~~lGfeIiATgGTAk~L--------~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l 160 (600)
..+|+.|.+.|.+++-|+-..+.+ ++.|.++ +-+.-.++++++++
T Consensus 10 ~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~D~~~~~~v~~~ 62 (241)
T PF13561_consen 10 RAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEV---------------------------IQCDLSDEESVEAL 62 (241)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEE---------------------------EESCTTSHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCce---------------------------EeecCcchHHHHHH
Confidence 568999999999999998776653 2233221 11222234444443
Q ss_pred ----HHcCCCceeEEEEeccCcHHh-hhcC-CCCChhhhhhcccc---chHHHHHHHHHC---CCCEEEEeC
Q 007518 161 ----SEHGIGTFDLVVVNLYPFYDK-VTSA-GGIDFEDGIENIDI---GGPAMIRAAAKN---HKDVLVVVG 220 (600)
Q Consensus 161 ----~~~~I~~IDlVVVNLYPFe~t-v~~~-~~~~~ee~IEnIDI---GGpsmiRAAAKN---~~~V~Vv~d 220 (600)
.+..-+.||++|.|.-..... ..++ .+.+.++.-+.+|+ +...|+|++.+. ..+++.++.
T Consensus 63 ~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 63 FDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp HHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 333238899999887544321 1110 02456677777776 777888888662 134555543
No 127
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=34.31 E-value=1.5e+02 Score=24.77 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=33.8
Q ss_pred HHHHHHHCCCCEEEEeCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 007518 204 MIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVA 253 (600)
Q Consensus 204 miRAAAKN~~~V~Vv~dP~DY~~vl~eL~~G~~s~~~R~~LA~kAF~~TA 253 (600)
.++.--++-.++..+-||++....++.+.+ +++.|+++|.+|.++..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~el~~~i~~ll~---~~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 32 GLREIFEDGEHIITYNDPEELAEKIEYLLE---NPEERRRIAKNARERVL 78 (92)
T ss_pred HHHHHcCCCCeEEEECCHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHH
Confidence 334444555566666677777777777653 77999999999998887
No 128
>PRK07063 short chain dehydrogenase; Provisional
Probab=34.22 E-value=97 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=28.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
|++||+....-=-..+++.|.+.|++++.+.-+...++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~ 45 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAE 45 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888887654447789999999999998866544444
No 129
>PRK07576 short chain dehydrogenase; Provisional
Probab=34.12 E-value=71 Score=31.78 Aligned_cols=38 Identities=5% Similarity=0.100 Sum_probs=27.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+..-.-=-..+++.|.+.|++++.+.-+..-++
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~ 47 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVD 47 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 47888876443336688999999999999876554443
No 130
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=34.04 E-value=2.2e+02 Score=27.75 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=29.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+-...-=-..+++.|.+.|++++.+.-+...|++
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~ 50 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEA 50 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHH
Confidence 578888876555577899999999999999766554443
No 131
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.76 E-value=3.6e+02 Score=27.72 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=24.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
+++||+....-=-..+|+.|.+.|.+++...
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~ 43 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVND 43 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 5788888765444788999999999998764
No 132
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=33.62 E-value=57 Score=31.75 Aligned_cols=34 Identities=26% Similarity=0.531 Sum_probs=21.3
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVAL 590 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaM 590 (600)
|.++.|.++|+..|+-||. |.+++++|+++|+..
T Consensus 67 ~~~~~a~~~Ga~~i~~p~~---~~~~~~~~~~~~~~~ 100 (190)
T cd00452 67 EQADAAIAAGAQFIVSPGL---DPEVVKAANRAGIPL 100 (190)
T ss_pred HHHHHHHHcCCCEEEcCCC---CHHHHHHHHHcCCcE
Confidence 6666666666666665542 566666666666653
No 133
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.47 E-value=66 Score=29.07 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=68.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHc-CcEEEEechh--HHHH-------HHCCCeeEEecccCCCCCCCCCccccccccccc
Q 007518 76 KQALISLSDKKDLASLGIGLQEL-GYTIVSTGGT--ATSL-------ENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHG 145 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~l-GfeIiATgGT--Ak~L-------~e~GI~v~~VskiTGfPEildGRVKTLHPkIhG 145 (600)
|++||.-....=-..+++.|.+. ++.++.++-. ...+ ++.|..+..+. -.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~-----------------~D--- 60 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIE-----------------CD--- 60 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEE-----------------SE---
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccc-----------------cc---
Confidence 45666665544347889999999 6688888765 3333 33333332222 11
Q ss_pred ccccCCCCHHhHHHHH-H--cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccc---cchHHHHHHHHH-CCCCEEEE
Q 007518 146 GILARRDQKHHMDALS-E--HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENID---IGGPAMIRAAAK-NHKDVLVV 218 (600)
Q Consensus 146 GILarr~~~~h~~~l~-~--~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnID---IGGpsmiRAAAK-N~~~V~Vv 218 (600)
+ . +++.++++- + ....++|+||.|---+....-. ..+.++..+.+. .|-..|.|++.. +..+++++
T Consensus 61 --~--~-~~~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~ 133 (167)
T PF00106_consen 61 --L--S-DPESIRALIEEVIKRFGPLDILINNAGIFSDGSLD--DLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNI 133 (167)
T ss_dssp --T--T-SHHHHHHHHHHHHHHHSSESEEEEECSCTTSBSGG--GSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEE
T ss_pred --c--c-ccccccccccccccccccccccccccccccccccc--cccchhhhhccccccceeeeeeehheeccccceEEe
Confidence 1 1 223333222 2 2347899999997776632222 334455555544 456677788877 77777777
Q ss_pred eCCCC
Q 007518 219 VGSED 223 (600)
Q Consensus 219 ~dP~D 223 (600)
++...
T Consensus 134 sS~~~ 138 (167)
T PF00106_consen 134 SSIAG 138 (167)
T ss_dssp EEGGG
T ss_pred cchhh
Confidence 76543
No 134
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=33.42 E-value=1.2e+02 Score=31.71 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=66.3
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCccccccccccccc--ccCCCCH
Q 007518 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGI--LARRDQK 154 (600)
Q Consensus 77 rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGI--Larr~~~ 154 (600)
++||+..---=-+.||++|.++|=+++-+|--.+.|.+ +|-..|.||+=. +++++.-
T Consensus 7 TiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e---------------------~~~~~p~~~t~v~Dv~d~~~~ 65 (245)
T COG3967 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAE---------------------AKAENPEIHTEVCDVADRDSR 65 (245)
T ss_pred EEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHH---------------------HHhcCcchheeeecccchhhH
Confidence 56776653222378999999999999999999999988 344555555422 2333322
Q ss_pred HhHHHHHHcCCCceeEEEEec---cCcHHhhhcCCCCChhhhhhccccchHHHHHH
Q 007518 155 HHMDALSEHGIGTFDLVVVNL---YPFYDKVTSAGGIDFEDGIENIDIGGPAMIRA 207 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNL---YPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRA 207 (600)
..+.+--....+.++++|-|- |+.+-+ .. .-+++++-+.|+|-=-+=||=
T Consensus 66 ~~lvewLkk~~P~lNvliNNAGIqr~~dlt-~~--e~~~~~~~~eI~~Nl~API~L 118 (245)
T COG3967 66 RELVEWLKKEYPNLNVLINNAGIQRNEDLT-GA--EDLLDDAEQEIATNLLAPIRL 118 (245)
T ss_pred HHHHHHHHhhCCchheeeecccccchhhcc-CC--cchhhHHHHHHHHhhhhHHHH
Confidence 223222345667788888873 444444 22 346677777777754444443
No 135
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=33.29 E-value=2.1e+02 Score=28.07 Aligned_cols=38 Identities=26% Similarity=0.258 Sum_probs=28.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+|+.|.+.|++++.+.-+...++
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~ 50 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE 50 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 57899887554447789999999999998866554443
No 136
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=33.27 E-value=1.2e+02 Score=29.71 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCccCceEEeeccccc--CC-ccchHHHHH-HCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 525 SLRIAMKKAGDEVKGAALASDAFFP--FA-WKDAVEEAC-ENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 525 s~~iA~~kA~~~~~GavlASDAFFP--F~-~~D~ve~Aa-~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
.+..|++.++ .|.||.-|+.=. .. |||-+-.++ ..|+..+|-- |.+||-+-|. +.|.++...|.
T Consensus 47 ~~~~~i~~~~---~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid-G~vRD~~~i~---~~~~Pvfa~g~ 114 (159)
T PRK09372 47 LVKELLEEPG---EGRVLVVDGGGSLRRALVGDNLAELAVDNGWEGIVVY-GCVRDVDELA---ELDIGIQALAA 114 (159)
T ss_pred HHHHHHhcCC---CCeEEEEECCCCcCcEeehHHHHHHHHHcCCeEEEec-ccccCHHHHh---hCCCCeEEeee
Confidence 3556777765 499998887532 22 899887755 5599998876 7799986654 78888877653
No 137
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.27 E-value=74 Score=30.83 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=35.3
Q ss_pred ccchHHHHHHCCCeEEe-cCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 552 WKDAVEEACENGIGVIA-EPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 552 ~~D~ve~Aa~aGi~aII-QPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
+.+.++.+.+.|+.+|| .|.-+-.=.++++.|.+.||++|+..
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d 87 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVD 87 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEe
Confidence 55789999999999988 66665445689999999999999854
No 138
>PRK08643 acetoin reductase; Validated
Probab=33.16 E-value=2.2e+02 Score=27.82 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=27.1
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk 110 (600)
|++||+....-=-..+++.|.+.|++++.+.-...
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~ 37 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEE 37 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46788877655557899999999999998865443
No 139
>PRK08339 short chain dehydrogenase; Provisional
Probab=32.92 E-value=94 Score=31.04 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=28.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
|++||+....-=-..+|+.|.+.|++++.++-...-+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~ 45 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENL 45 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4789988766545779999999999999886444333
No 140
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=32.88 E-value=1.2e+02 Score=32.51 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=47.8
Q ss_pred cccHHHHHHHHHHcCcEE-EEechh----HHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHH
Q 007518 85 KKDLASLGIGLQELGYTI-VSTGGT----ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDA 159 (600)
Q Consensus 85 K~glv~~Ak~L~~lGfeI-iATgGT----Ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~ 159 (600)
..|+.++.+.|++.|+.+ +.|+|. ...+++.|+.-..-+.+ |+.+|++..- +.|-+.....+++.+++
T Consensus 183 ~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~~~an~l----ei~dg~ltg~---v~g~iv~~k~K~~~L~~ 255 (322)
T PRK11133 183 MPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDAAVANEL----EIMDGKLTGN---VLGDIVDAQYKADTLTR 255 (322)
T ss_pred ChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCeEEEeEE----EEECCEEEeE---ecCccCCcccHHHHHHH
Confidence 478889999999999975 677775 34455677743222222 3335554221 11122333455666666
Q ss_pred H-HHcCCCceeEEEE
Q 007518 160 L-SEHGIGTFDLVVV 173 (600)
Q Consensus 160 l-~~~~I~~IDlVVV 173 (600)
+ +++|+.+=+.|+|
T Consensus 256 la~~lgi~~~qtIaV 270 (322)
T PRK11133 256 LAQEYEIPLAQTVAI 270 (322)
T ss_pred HHHHcCCChhhEEEE
Confidence 4 5788877666665
No 141
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=32.67 E-value=1.1e+02 Score=33.69 Aligned_cols=62 Identities=21% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHHcCCccCceEEeecccccCC--ccchHH-HHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 527 RIAMKKAGDEVKGAALASDAFFPFA--WKDAVE-EACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 527 ~iA~~kA~~~~~GavlASDAFFPF~--~~D~ve-~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
..|++.++ .|.||.-|+..+.. |||-+- .|...|+..+|-- |.+||-+-| .+.|.+++-.|.
T Consensus 281 ~~~~~~~~---~G~VlVi~~~~~~~a~~G~~~~~~a~~~G~~G~Vid-G~vRD~~~i---~~~~~pv~~~g~ 345 (430)
T PRK07028 281 VEAIDVAK---PGDVIVIYNSSKDIAPWGELATLSCLNKGIAGVVID-GAVRDVDEI---RKLGFPVFARAI 345 (430)
T ss_pred HHHHhcCC---CCeEEEEECCCCCceeecHHHHHHHHHCCCeEEEEe-eccCCHHHH---hhCCCCeEeeec
Confidence 45666664 48999999844443 999984 4666799998876 789997766 456888776553
No 142
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=32.63 E-value=61 Score=33.61 Aligned_cols=45 Identities=24% Similarity=0.434 Sum_probs=38.2
Q ss_pred cCCccchHHHHHHCCCeEEe--cCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 549 PFAWKDAVEEACENGIGVIA--EPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 549 PF~~~D~ve~Aa~aGi~aII--QPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
||...+......+.||.++| +-||+ --+|=|+||.+.||++|.-.
T Consensus 180 Pfs~e~n~al~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 180 PFSKELNRALFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEEe
Confidence 66655777778899999999 57888 89999999999999998754
No 143
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=32.48 E-value=54 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=26.1
Q ss_pred chHHHHHHCCCeE-EecCCC-CCCc-hHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGV-IAEPGG-SIRD-GDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~a-IIQPGG-SiRD-~evI~aa~e~giaMv 591 (600)
|.++++++.||++ ||-..| +.+| +++.+.|.++||.++
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 6777777777766 333333 4443 388999999998876
No 144
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=32.12 E-value=4.9e+02 Score=25.40 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=24.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+++||+-...-==..+++.|.+.|++++.+.-
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r 40 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDR 40 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57888887554446789999999999998754
No 145
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=31.93 E-value=73 Score=36.73 Aligned_cols=111 Identities=24% Similarity=0.240 Sum_probs=75.2
Q ss_pred cceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcC--Cc--cCceEEeeccc
Q 007518 472 QFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAG--DE--VKGAALASDAF 547 (600)
Q Consensus 472 ~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~--~~--~~GavlASDAF 547 (600)
.++.+-.++.+---+-|+.-||++++-..-+|.|++|...--|++.|. .+..|..||- |. .=|.++|--.
T Consensus 238 ~~~ql~GK~lSyNN~lD~d~A~~~v~ef~~pa~vivKH~nPCGvA~~~-----~~~~Ay~~A~~~Dp~SaFGgiva~N~- 311 (513)
T PRK00881 238 TAEQLQGKELSYNNIADADAALELVKEFDEPACVIVKHANPCGVAVGD-----TILEAYDKAYACDPVSAFGGIIAFNR- 311 (513)
T ss_pred ccceecCCccCCcchhchHHHHHHHHhcCCCeEEEEecCCcceeecCC-----CHHHHHHHHHhcCCccccCCEEEECC-
Confidence 566677777888999999999999999999999999999999999996 4567777763 32 3366665332
Q ss_pred ccCCccchHHHHHHCCCeEEecCCCCCCchHHHHH-HHhcCcEEEec
Q 007518 548 FPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDC-CNKYGVALLLT 593 (600)
Q Consensus 548 FPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~a-a~e~giaMvfT 593 (600)
|.. .+.-+...+.=+..||.|+=+ +|.++. ..+-|+-++-.
T Consensus 312 -~vd-~~~A~~i~~~f~EviiAP~~~---~eAl~iL~~KknlR~l~~ 353 (513)
T PRK00881 312 -EVD-AETAEAIHKIFLEVIIAPSFS---EEALEILAKKKNLRLLEC 353 (513)
T ss_pred -ccC-HHHHHHHHhheEEEEEcCCCC---HHHHHHHhhCCCeEEEEe
Confidence 222 123333344457788999864 444433 34445655543
No 146
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=31.43 E-value=1.3e+02 Score=33.74 Aligned_cols=85 Identities=26% Similarity=0.286 Sum_probs=57.5
Q ss_pred CCCCHHhHHH-HHHcCCCceeEEEEeccC-cHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEe-------C
Q 007518 150 RRDQKHHMDA-LSEHGIGTFDLVVVNLYP-FYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVV-------G 220 (600)
Q Consensus 150 rr~~~~h~~~-l~~~~I~~IDlVVVNLYP-Fe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~-------d 220 (600)
.|+-|+|+=+ ++++| -+|-||||| |-. ... .++..++++.||- ||+-|= ++||-.=. -
T Consensus 283 ~rNVPDdVL~llk~Ng----GvVMVnfy~~~is-c~~--~A~v~~v~~Hi~h-----Ir~VaG-~~hIGlGg~yDGi~~~ 349 (419)
T KOG4127|consen 283 SRNVPDDVLQLLKENG----GVVMVNFYPGFIS-CSD--RATVSDVADHINH-----IRAVAG-IDHIGLGGDYDGIPRV 349 (419)
T ss_pred ccCCcHHHHHHHhhcC----CEEEEEeeccccc-CCC--cccHHHHHHHHHH-----HHHhhc-cceeeccCCcCCcCCC
Confidence 4677888755 44555 489999999 433 333 6789999999983 777666 77776644 3
Q ss_pred CC------CHHHHHHHHhCCCCCHHHHHHHHHH
Q 007518 221 SE------DYPALLEFLKGNQDDQQFRRKLAWK 247 (600)
Q Consensus 221 P~------DY~~vl~eL~~G~~s~~~R~~LA~k 247 (600)
|. -|+.++.||-+...+.+.-..||.-
T Consensus 350 PkGLEDVSkYP~LiaeLl~r~~~~~E~~~l~g~ 382 (419)
T KOG4127|consen 350 PKGLEDVSKYPDLIAELLERGWWEEELIGLAGG 382 (419)
T ss_pred CcchhhhhhhHHHHHHHHhcCCcHHHHHHHhcc
Confidence 44 8999999997644444443446643
No 147
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=31.29 E-value=60 Score=33.41 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.6
Q ss_pred hHHHHHHCCCeEEecCCCCCC---chHHHHHHHhcCcEEEe
Q 007518 555 AVEEACENGIGVIAEPGGSIR---DGDAIDCCNKYGVALLL 592 (600)
Q Consensus 555 ~ve~Aa~aGi~aIIQPGGSiR---D~evI~aa~e~giaMvf 592 (600)
-++.|.+.|+++||-|+++=+ =+++.+-|.++||-++|
T Consensus 68 l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~ 108 (217)
T PF02593_consen 68 LPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEF 108 (217)
T ss_pred HHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeec
Confidence 456777799999999999855 33899999999998876
No 148
>PRK07478 short chain dehydrogenase; Provisional
Probab=31.15 E-value=1.1e+02 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=29.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+++.|.+.|++++.++-+.+-+++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~ 45 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQ 45 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578888876544477899999999999998766555544
No 149
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=30.93 E-value=96 Score=33.50 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcC--cEEEEech--------hHHHHHHCCCeeEEeccc
Q 007518 76 KQALISLSDKKDLASLGIGLQELG--YTIVSTGG--------TATSLENAGVSVTKVEQL 125 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lG--feIiATgG--------TAk~L~e~GI~v~~Vski 125 (600)
+.++++.++-+.+.++.+...+.| |+++-|++ |++.|+++||+++.|.+-
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEech
Confidence 568888888778888888877776 69999986 899999999999998774
No 150
>PRK07825 short chain dehydrogenase; Provisional
Probab=30.88 E-value=1.6e+02 Score=29.07 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=28.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+...-.=-..+++.|.+.|+.++.+.-....+++
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~ 44 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKE 44 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 468888764333367889999999999888766555543
No 151
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=30.84 E-value=75 Score=32.10 Aligned_cols=56 Identities=27% Similarity=0.319 Sum_probs=40.0
Q ss_pred CCchhhcHHHHHHHHHhcCCCeEEEEccCCcc---cccccCCHHHHHHHHHhcCCCCcCC
Q 007518 325 SYNNYLDADAAWNCVSEFKNPTCVIVKHTNPC---GVASRDDILEAYKLAVKADPVSAFG 381 (600)
Q Consensus 325 SYNN~lD~daA~~lv~ef~~pa~vivKH~nPC---GvA~~~~l~eAy~~A~~~DpvSaFG 381 (600)
.|-.+.|.+.|++.++++..|. ++||..-.| ||-+.+|..||.+-.-+.=-...||
T Consensus 19 ~~~~f~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg 77 (194)
T PF01071_consen 19 KYKVFTDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFG 77 (194)
T ss_dssp -EEEESSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTC
T ss_pred CeeEECCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccC
Confidence 4666778999999999998888 899977666 5666778877765544433334555
No 152
>PRK07775 short chain dehydrogenase; Provisional
Probab=30.84 E-value=2.6e+02 Score=28.00 Aligned_cols=127 Identities=14% Similarity=0.201 Sum_probs=63.5
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCH
Q 007518 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (600)
Q Consensus 75 i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~ 154 (600)
.+++||+...--=-..+++.|.+.|++++.+......+++.. .++. ..++++.+++-.+ .++
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~------~~~~----~~~~~~~~~~~Dl--------~~~ 71 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELV------DKIR----ADGGEAVAFPLDV--------TDP 71 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH------HHHH----hcCCeEEEEECCC--------CCH
Confidence 357888876533336788999999999988765443333310 0000 0123444332211 123
Q ss_pred HhHHH-HHH--cCCCceeEEEEeccCcHHhhhcCCCCChhhh--hhccccchHHHHHHHH------HCCCCEEEEeCC
Q 007518 155 HHMDA-LSE--HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDG--IENIDIGGPAMIRAAA------KNHKDVLVVVGS 221 (600)
Q Consensus 155 ~h~~~-l~~--~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~--IEnIDIGGpsmiRAAA------KN~~~V~Vv~dP 221 (600)
+.+++ +++ ...+++|.||.|---....-.. ..+.++. .-++..-|+-.+..++ ++..+++.+++-
T Consensus 72 ~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~ 147 (274)
T PRK07775 72 DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLH--EISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSD 147 (274)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCCcccc--cCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECCh
Confidence 33322 221 2245899999887433211111 2233332 2245666776554443 344556666653
No 153
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=30.83 E-value=97 Score=33.75 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=58.3
Q ss_pred eEEEEEeCCeEEEecCCCCc-HHHHHHHHHHHcCCccCceEEeecccccC------CccchHHHHHHCCCeEEec-----
Q 007518 502 NAIVIAKNNCMLGMGSGQPN-RRESLRIAMKKAGDEVKGAALASDAFFPF------AWKDAVEEACENGIGVIAE----- 569 (600)
Q Consensus 502 NAIV~ak~~~tvGiGaGQ~s-RVds~~iA~~kA~~~~~GavlASDAFFPF------~~~D~ve~Aa~aGi~aIIQ----- 569 (600)
=||+ ++||+.||.|.-+.+ ..+|-..|+.+|+..++|+.|-.= ..|= + -|.....++||+.|+=
T Consensus 28 Gavi-v~~g~ii~~g~n~~~g~~HAE~~ai~~a~~~~~g~tlyvT-lEPC~~~g~t~--mC~~aii~agI~rVv~~~~dp 103 (367)
T PRK10786 28 GCVI-VKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVT-LEPCSHHGRTP--PCCDALIAAGVARVVAAMQDP 103 (367)
T ss_pred EEEE-EeCCEEEEEEeCCCCCCCCHHHHHHHHHhhhcCCCEEEEe-cCCccCCCCCh--HHHHHHHHhCCCEEEEecCCC
Confidence 3554 589999999986653 257778899999888888776543 6777 5 6899999999999984
Q ss_pred -CCCCCCchHHHHHHHhcCcEEE
Q 007518 570 -PGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 570 -PGGSiRD~evI~aa~e~giaMv 591 (600)
||..-+ .++.-.++||.++
T Consensus 104 ~~~~~g~---~~~~l~~~gi~v~ 123 (367)
T PRK10786 104 NPQVAGR---GLYRLQQAGIDVS 123 (367)
T ss_pred CcccCch---HHHHHhcCCcEEE
Confidence 222211 2333446777664
No 154
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=30.71 E-value=1.8e+02 Score=26.82 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=54.6
Q ss_pred HHHHHHH--Hh--hhcceEEEEEeCCeEEEecCCCCc-HHHHHHHHHHHcCC-ccCceEEeecccccC------CccchH
Q 007518 489 AEFAWLC--VK--HVKSNAIVIAKNNCMLGMGSGQPN-RRESLRIAMKKAGD-EVKGAALASDAFFPF------AWKDAV 556 (600)
Q Consensus 489 L~FAwkv--vK--hvKSNAIV~ak~~~tvGiGaGQ~s-RVds~~iA~~kA~~-~~~GavlASDAFFPF------~~~D~v 556 (600)
+.-||+. .+ ...--|+++-+||++|+.|--+.. -.+|-..|+.+|.. .+.|+.|-+ -..|= + =+.
T Consensus 5 l~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~~l~g~tly~-TlEPC~~~~~~~--mC~ 81 (115)
T cd01284 5 LELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEKLARGATLYV-TLEPCSHHGKTP--PCV 81 (115)
T ss_pred HHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhcCCCCeEEEE-eCCCCCCCCCch--HHH
Confidence 4455554 22 333446666566999999887763 34677788999877 688887765 35666 4 589
Q ss_pred HHHHHCCCeEEe
Q 007518 557 EEACENGIGVIA 568 (600)
Q Consensus 557 e~Aa~aGi~aII 568 (600)
.....+||+.|+
T Consensus 82 ~ai~~~gi~~Vv 93 (115)
T cd01284 82 DAIIEAGIKRVV 93 (115)
T ss_pred HHHHHHCcCEEE
Confidence 999999999998
No 155
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=30.62 E-value=66 Score=32.28 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=19.5
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMv 591 (600)
|-++.|.++|+..|+-|+ -|.|++++|.+.|+..+
T Consensus 74 ~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~ 108 (206)
T PRK09140 74 EQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVM 108 (206)
T ss_pred HHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEE
Confidence 455555566665555554 25566666665555443
No 156
>PRK13753 dihydropteroate synthase; Provisional
Probab=30.59 E-value=1.6e+02 Score=31.50 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=45.6
Q ss_pred ceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCcc
Q 007518 539 GAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRH 597 (600)
Q Consensus 539 GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RH 597 (600)
+..++-|-|-| +.++.|.++|+.-|--=.|. +|++..+.+.++|.++|...+|+
T Consensus 76 ~~~ISIDT~~~----~va~~al~aGadiINDVsg~-~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 76 MHRVSIDSFQP----ETQRYALKRGVGYLNDIQGF-PDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CCcEEEECCCH----HHHHHHHHcCCCEEEeCCCC-CchHHHHHHHHcCCCEEEEecCC
Confidence 56788899875 78999999999877766776 59999999999999999988763
No 157
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=30.38 E-value=1.1e+02 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=24.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTA 109 (600)
+++||+....-=-..+++.|.+.|++++.+.-..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4677777654444688999999999999875433
No 158
>PLN02572 UDP-sulfoquinovose synthase
Probab=30.26 E-value=1e+02 Score=34.06 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCCCCCCcEEEEEecCcccH--HHHHHHHHHcCcEEEEec
Q 007518 68 SSSSSQANKQALISLSDKKDL--ASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 68 ~~~~~~~i~rALISVsDK~gl--v~~Ak~L~~lGfeIiATg 106 (600)
.+|+.-+.+++||+.. +|. -.+++.|.+.|++++...
T Consensus 40 ~~~~~~~~k~VLVTGa--tGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 40 GSSSSSKKKKVMVIGG--DGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred CCCccccCCEEEEECC--CcHHHHHHHHHHHHCCCeEEEEe
Confidence 3344446678999876 444 457899999999998854
No 159
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=29.89 E-value=28 Score=31.62 Aligned_cols=60 Identities=35% Similarity=0.431 Sum_probs=44.0
Q ss_pred EEEec-CcccHHHHHHHHHHcC---cEEEEech----hHHHHHHCCCeeEEeccc--CCCCCCCCCcccc
Q 007518 79 LISLS-DKKDLASLGIGLQELG---YTIVSTGG----TATSLENAGVSVTKVEQL--TCFPEMLDGRVKT 138 (600)
Q Consensus 79 LISVs-DK~glv~~Ak~L~~lG---feIiATgG----TAk~L~e~GI~v~~Vski--TGfPEildGRVKT 138 (600)
...+. +..++..|...|.+.+ +-+-+||| =+.+|.++|++|..|+-. -.+.+.+++|.||
T Consensus 25 ~~~~~~~~~~~~~l~~~l~~~~~~~v~~E~tg~y~~~l~~~L~~~g~~v~~vnp~~~~~~~~~~~~~~Kt 94 (144)
T PF01548_consen 25 RFKFENDPAGLEKLLDWLASLGPVLVVMEATGGYWRPLADFLQDAGIEVVVVNPLQVKRFRKSLGRRAKT 94 (144)
T ss_pred EEEEeccccchhHHhhhhccccccccccccccccchhhhhheeccccccccccccccccccccccccccc
Confidence 33444 7899999999998886 44556774 457888899999988765 3566666677776
No 160
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=29.81 E-value=62 Score=33.85 Aligned_cols=39 Identities=21% Similarity=0.440 Sum_probs=29.8
Q ss_pred chHHHHHHCCCeEEecCCCCCCch-HHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDG-DAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~-evI~aa~e~giaMvf 592 (600)
+=++.|+++||..||=|-=+.... |+++.|+++||..+|
T Consensus 110 ~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEE
Confidence 446788888888888887666433 778888888888776
No 161
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=29.69 E-value=2.1e+02 Score=30.58 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhc----ceEEEEEeCCeEEEecCCCC-cHHHHHHHHHHHcCCccCceEEeecccccC------CccchH
Q 007518 488 DAEFAWLCVKHVK----SNAIVIAKNNCMLGMGSGQP-NRRESLRIAMKKAGDEVKGAALASDAFFPF------AWKDAV 556 (600)
Q Consensus 488 dL~FAwkvvKhvK----SNAIV~ak~~~tvGiGaGQ~-sRVds~~iA~~kA~~~~~GavlASDAFFPF------~~~D~v 556 (600)
.+..|++...... =-| |+++||+.||.|-=++ ...+|-..|+.+|+.+++|+.|-.- ..|= + =|.
T Consensus 4 a~~~a~~~~~~~~~~~~vGa-viv~~~~ii~~g~n~~~~~~HAE~~ai~~a~~~~~g~tlyvt-lEPC~~~g~~~--~C~ 79 (344)
T TIGR00326 4 ALDLAKKGQGTTHPNPLVGC-VIVKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGATAYVT-LEPCSHQGRTP--PCA 79 (344)
T ss_pred HHHHHHhcCCCCCCCCCEEE-EEEeCCEEEEEeeCCCCCCCCHHHHHHHHhccccCCcEEEEe-CCCCCCCCCCc--HHH
Confidence 3455666544332 224 5667999999986553 3446777899999988889877553 6777 4 689
Q ss_pred HHHHHCCCeEEe------cCCCCCCchHHHHHHHhcCcEEE
Q 007518 557 EEACENGIGVIA------EPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 557 e~Aa~aGi~aII------QPGGSiRD~evI~aa~e~giaMv 591 (600)
....++||+.|+ -|+..- ..++.-.+.||...
T Consensus 80 ~ai~~~gi~~vv~~~~d~~~~~~~---~~~~~l~~~gi~v~ 117 (344)
T TIGR00326 80 EAIIEAGIKKVVVSMQDPNPLVAG---RGAERLKQAGIEVT 117 (344)
T ss_pred HHHHHcCCCEEEEEeCCCCccccc---hHHHHHhcCCcEEE
Confidence 999999999998 233321 23455566677653
No 162
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=29.50 E-value=61 Score=30.00 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=30.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
..++...+.++.|||=--|-.=.+++++.|+++|++++-|..
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 567777888888888888887788999999999999998875
No 163
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=29.47 E-value=79 Score=32.13 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.0
Q ss_pred EEEEEecCcccH----HHHHHHHHHcCcEEEEech----hHHHHHHCCCeeEEec
Q 007518 77 QALISLSDKKDL----ASLGIGLQELGYTIVSTGG----TATSLENAGVSVTKVE 123 (600)
Q Consensus 77 rALISVsDK~gl----v~~Ak~L~~lGfeIiATgG----TAk~L~e~GI~v~~Vs 123 (600)
+.||++..-.|= .++++.|.+.|+++.-.++ ...++++.|+++..+.
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~ 56 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIP 56 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEe
Confidence 688888844333 4899999999999866433 2233355688777664
No 164
>PRK09072 short chain dehydrogenase; Provisional
Probab=29.21 E-value=4.5e+02 Score=25.82 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=28.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+++.|.+.|++++.+.-..+.+++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~ 44 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEA 44 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 468888765433378999999999999988655444443
No 165
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.20 E-value=3.7e+02 Score=26.05 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=25.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGT 108 (600)
+.+||+....-=-..+++.|.+.|++++.+.-+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecC
Confidence 568888775544467899999999999987643
No 166
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=29.08 E-value=73 Score=31.12 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=29.3
Q ss_pred hHHHHHHCCCeEE-ecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 555 AVEEACENGIGVI-AEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 555 ~ve~Aa~aGi~aI-IQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
.++.+...++.+| |.|..+-...+.++.+.++||++|+.+.
T Consensus 49 ~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (275)
T cd06320 49 IAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVND 90 (275)
T ss_pred HHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECC
Confidence 3666777899985 5554443334678888999999998874
No 167
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=28.88 E-value=79 Score=32.98 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=38.0
Q ss_pred hHHHHHHCCCeeEEecccCCCCCCCCCcccccccc-----c-ccccccCCCCHHhHHHHHHcCCCc
Q 007518 108 TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPN-----I-HGGILARRDQKHHMDALSEHGIGT 167 (600)
Q Consensus 108 TAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPk-----I-hGGILarr~~~~h~~~l~~~~I~~ 167 (600)
+|..|.++|.+|+.++.- +-+|||+.|.+-. + .|+-..-...+.-.+-++++|++.
T Consensus 2 AA~~L~~~G~~v~vlEa~----~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~ 63 (419)
T TIGR03467 2 AAVELARAGARVTLFEAR----PRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEP 63 (419)
T ss_pred hHHHHHhCCCceEEEecC----CCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCch
Confidence 588999999999998885 5689999998643 1 122222223455566677788763
No 168
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.67 E-value=1.7e+02 Score=29.66 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=28.8
Q ss_pred chHHHHHHCCCeEEecCCCCCC----c-----------hHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSIR----D-----------GDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiR----D-----------~evI~aa~e~giaMvf 592 (600)
+.++.|...|++.|+=+|+... + .++.+.|.++||.+.+
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 6788888889888877765432 1 2677888888988776
No 169
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=28.64 E-value=2.3e+02 Score=29.98 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=36.9
Q ss_pred CCcEEEEEecC---cccHHHHHHHHHHcCc--EE-EEechh-----HHHHHHCCCeeEEec
Q 007518 74 ANKQALISLSD---KKDLASLGIGLQELGY--TI-VSTGGT-----ATSLENAGVSVTKVE 123 (600)
Q Consensus 74 ~i~rALISVsD---K~glv~~Ak~L~~lGf--eI-iATgGT-----Ak~L~e~GI~v~~Vs 123 (600)
+++.+-++..+ ..++.++.+.+.+.+. .+ +.|.|+ ++.|+++|+.-..||
T Consensus 61 Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~IS 121 (329)
T PRK13361 61 GVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNIS 121 (329)
T ss_pred CCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEE
Confidence 45667666653 4679999999988763 34 689996 578889999866665
No 170
>TIGR03363 VI_chp_8 type VI secretion-associated protein, ImpA family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=28.55 E-value=40 Score=36.45 Aligned_cols=63 Identities=25% Similarity=0.311 Sum_probs=44.9
Q ss_pred cCCcccccccC-CHHHHHHHHH-hcCCCCcCCCEEEEccccCHHHHHHHhcccCCCCCccccEEEEEEcCCCCHHHHHHH
Q 007518 352 HTNPCGVASRD-DILEAYKLAV-KADPVSAFGGIVAFNVEVDEALAKELREYRSPTDGETRMFYEIVVAPSYTEEGLEIL 429 (600)
Q Consensus 352 H~nPCGvA~~~-~l~eAy~~A~-~~DpvSaFGGIVA~Nr~vD~~tA~~i~~~~~~~~~~~~~F~EvIIAP~f~~eAleiL 429 (600)
-.+|||.=... ...++.+.++ ..+|-..||.++.-...+|-..-+ ..+.++|
T Consensus 12 ~~~P~G~dl~yd~~f~~l~~~~~~~~~~~~~g~~~~~~~~~DW~~V~--------------------------~~~~~lL 65 (353)
T TIGR03363 12 DDSPCGEDLEYSAEFDRLKEARREDDPELQQGDWVTELKAADWPAVE--------------------------RLASELL 65 (353)
T ss_pred CCCCCCCCcccCHHHHHHHHHHhcCCcccccccccccccccCHHHHH--------------------------HHHHHHH
Confidence 36899987754 4678888888 477777888887554444443322 4577899
Q ss_pred hhccCCceEEE
Q 007518 430 RGKSKNLRILE 440 (600)
Q Consensus 430 ~~K~KnlRlL~ 440 (600)
++|+|+|||+-
T Consensus 66 ~~~sKDLrv~~ 76 (353)
T TIGR03363 66 KTRSKDLRLAA 76 (353)
T ss_pred HhcChHHHHHH
Confidence 99999999774
No 171
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=28.43 E-value=66 Score=34.11 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred chHHHHHHCCCeEE--ecCCCCCCc-hHHHHHHHhcCcEEE
Q 007518 554 DAVEEACENGIGVI--AEPGGSIRD-GDAIDCCNKYGVALL 591 (600)
Q Consensus 554 D~ve~Aa~aGi~aI--IQPGGSiRD-~evI~aa~e~giaMv 591 (600)
|.++++++.||+++ +-.|=+-+| +++.+.|.++||.++
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLI 118 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 66666666666553 223334444 588899999998876
No 172
>PRK07791 short chain dehydrogenase; Provisional
Probab=28.41 E-value=3.3e+02 Score=27.67 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=24.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
+++||+....-=-..+|+.|.+.|+.++.+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~ 37 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVND 37 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEee
Confidence 5788888766445788999999999998764
No 173
>PRK08227 autoinducer 2 aldolase; Validated
Probab=28.33 E-value=44 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=28.1
Q ss_pred hHHHHHHCCCeEE---ecCCCCCC-----ch-HHHHHHHhcCcEEEe
Q 007518 555 AVEEACENGIGVI---AEPGGSIR-----DG-DAIDCCNKYGVALLL 592 (600)
Q Consensus 555 ~ve~Aa~aGi~aI---IQPGGSiR-----D~-evI~aa~e~giaMvf 592 (600)
+||.|.+.|+.|| |-||+.-. |- +|++.|+++||+++-
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 4999999987766 56886322 22 567899999999774
No 174
>PRK06125 short chain dehydrogenase; Provisional
Probab=28.25 E-value=3.5e+02 Score=26.51 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=29.6
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+-...-=-..+++.|.+.|++++.++-+...+++
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 46 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEA 46 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 578888875444467889999999999998876655543
No 175
>COG1803 MgsA Methylglyoxal synthase [Carbohydrate transport and metabolism]
Probab=28.03 E-value=1.4e+02 Score=28.98 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred CCcEEEEEec-CcccHHHHHHHHHHc--CcEEEEechhHHHHHH-CCCeeEEecc
Q 007518 74 ANKQALISLS-DKKDLASLGIGLQEL--GYTIVSTGGTATSLEN-AGVSVTKVEQ 124 (600)
Q Consensus 74 ~i~rALISVs-DK~glv~~Ak~L~~l--GfeIiATgGTAk~L~e-~GI~v~~Vsk 124 (600)
.++-|||.=- -|..++.|++.-.+. -++|+|||-|...+++ -|++|..+..
T Consensus 4 ~k~IALIAHD~kK~~lv~f~~~~~~~L~~h~L~ATGTTG~~i~~atgL~v~~~~S 58 (142)
T COG1803 4 RKHIALIAHDHKKDDLVNFVQAHKELLSRHDLYATGTTGGLIQEATGLNVHRLKS 58 (142)
T ss_pred cceEEEEecchhHHHHHHHHHHHHHHhhhceEEEecCchHHHHHHhCCceEEeec
Confidence 4455777665 378999999876553 8999999999998876 5777666544
No 176
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=27.99 E-value=2.1e+02 Score=26.43 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCccccccccc
Q 007518 85 KKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNI 143 (600)
Q Consensus 85 K~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkI 143 (600)
...+.++.+.+.+.|--|.+-..-...|.++|+ |+||=-|-||..
T Consensus 78 ~~~l~~~l~~~~~~~~~i~~ic~G~~~La~agl--------------L~g~~~T~~~~~ 122 (166)
T TIGR01382 78 NNKAVRLVREFVEKGKPVAAICHGPQLLISAGV--------------LRGKKLTSYPAI 122 (166)
T ss_pred CHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCc--------------cCCCEEEcCccH
Confidence 356889999999999999998888889999885 789888999873
No 177
>PRK08263 short chain dehydrogenase; Provisional
Probab=27.83 E-value=3.1e+02 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=27.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+-...-=-..+++.|.+.|++++.+.-....|.+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~ 42 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLAD 42 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 468888764333356889999999999988766655543
No 178
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=27.60 E-value=80 Score=30.27 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCc--cCce---EEeecccccCC-ccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 522 RRESLRIAMKKAGDE--VKGA---ALASDAFFPFA-WKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 522 RVds~~iA~~kA~~~--~~Ga---vlASDAFFPF~-~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
-..+++.|++..++. ..|. +...|.=-.-. .-+.++.+.+.|+.+||-|.+|---..+.+.+++.||+++..+.
T Consensus 19 ~~~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~ 98 (298)
T cd06268 19 VRNGAELAVEEINAAGGILGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISPGA 98 (298)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEccCC
Confidence 445666666665431 2221 23333322111 11445667778999999888775445789999999999998653
No 179
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.54 E-value=1.6e+02 Score=29.70 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=22.4
Q ss_pred chHHHHHHCCCeEEecCCCCCCc---------------hHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSIRD---------------GDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD---------------~evI~aa~e~giaMvf 592 (600)
.+|+.|++.|++.|+=+|+-..+ +++.+.|.++||.+.+
T Consensus 103 ~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 103 KAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 35567777777766655543111 3455666667776554
No 180
>TIGR00723 ttdB_fumA_fumB hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase. This model represents a subset of closely related proteins or modules, including the E. coli tartrate dehydratase beta chain and the C-terminal region of the class I fumarase (where the N-terminal region is homologous to the tartrate dehydratase alpha chain). The activity of archaeal proteins in this subfamily has not been established.
Probab=27.45 E-value=91 Score=31.06 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=25.5
Q ss_pred HHHHH-CCCeEEecCCCCCCchHHHHHHHhcCcE
Q 007518 557 EEACE-NGIGVIAEPGGSIRDGDAIDCCNKYGVA 589 (600)
Q Consensus 557 e~Aa~-aGi~aIIQPGGSiRD~evI~aa~e~gia 589 (600)
+...+ .|++.+|--||- +++++++|.+||-.
T Consensus 79 ~~ll~~~Gv~~~IGKG~~--~~~~~~a~k~~gaV 110 (168)
T TIGR00723 79 PELLEKLGVMAIIGKGGM--SKEVVEACRKYKAV 110 (168)
T ss_pred HHHHHhCCcEEEEECCCC--CHHHHHHHHHCCEE
Confidence 33444 699999999885 99999999999865
No 181
>PLN02591 tryptophan synthase
Probab=27.15 E-value=70 Score=33.29 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred chHHHHHHCCCeEEecCCCCCC-chHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSIR-DGDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiR-D~evI~aa~e~giaMvf 592 (600)
+=++.|+++||..+|=|.=.+. .+|.+++|++|||..||
T Consensus 97 ~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVL 136 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 3457788888888888854442 23788888999988876
No 182
>PRK06914 short chain dehydrogenase; Provisional
Probab=27.09 E-value=2.5e+02 Score=27.83 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=27.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+...--=-..+++.|.+.|++++.++-+...++
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~ 41 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQE 41 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 45788776433346788999999999999876655443
No 183
>PRK06114 short chain dehydrogenase; Provisional
Probab=27.05 E-value=5.2e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=25.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+++||+....-=-..+|+.|.+.|++++.+..
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 57888877655457889999999999988754
No 184
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=26.98 E-value=83 Score=32.48 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.1
Q ss_pred cEEEEEec----CcccHHHHHHHHHHcCcEEEEechh----HHHHHHCCCeeEEecc
Q 007518 76 KQALISLS----DKKDLASLGIGLQELGYTIVSTGGT----ATSLENAGVSVTKVEQ 124 (600)
Q Consensus 76 ~rALISVs----DK~glv~~Ak~L~~lGfeIiATgGT----Ak~L~e~GI~v~~Vsk 124 (600)
+++||++. +-....++++.|.+.|+++.--++. ...+++.|+++..+.-
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~ 58 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPS 58 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEec
Confidence 57888875 4556679999999999997664332 2334556888777653
No 185
>PRK06139 short chain dehydrogenase; Provisional
Probab=26.96 E-value=1.5e+02 Score=31.42 Aligned_cols=39 Identities=10% Similarity=0.055 Sum_probs=28.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+-...-=-..+|+.|.+.|++++.+.-....|++
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~ 46 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQA 46 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 568887775433467889999999999988765555543
No 186
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.96 E-value=2e+02 Score=28.87 Aligned_cols=39 Identities=23% Similarity=0.246 Sum_probs=25.1
Q ss_pred chHHHHHHCCCeEEecCCCCC----Cc-----------hHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSI----RD-----------GDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSi----RD-----------~evI~aa~e~giaMvf 592 (600)
..|+.|...|++.|+=||+.. .+ +++.+.|.++||.+.+
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 566777788888877666531 11 3456667777876665
No 187
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=26.89 E-value=73 Score=30.54 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=49.5
Q ss_pred cHHHHHHHHHHHcCCc--cCc---eEEeecc-cccCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEec
Q 007518 521 NRRESLRIAMKKAGDE--VKG---AALASDA-FFPFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLT 593 (600)
Q Consensus 521 sRVds~~iA~~kA~~~--~~G---avlASDA-FFPF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfT 593 (600)
+...+++.|+++.++. +.| -++..|. -=|....+.++.+++. ||.+||-|+.+--...+.+.+++.||++|..
T Consensus 18 ~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~ 97 (299)
T cd04509 18 FRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISP 97 (299)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEec
Confidence 3567788888887542 222 2222333 2233333566777777 9999999988755556778899999999987
Q ss_pred CC
Q 007518 594 SV 595 (600)
Q Consensus 594 g~ 595 (600)
+.
T Consensus 98 ~~ 99 (299)
T cd04509 98 GA 99 (299)
T ss_pred cC
Confidence 53
No 188
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=26.88 E-value=80 Score=33.70 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHHHcCC--ccCc---eEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 520 PNRRESLRIAMKKAGD--EVKG---AALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 520 ~sRVds~~iA~~kA~~--~~~G---avlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
.+-+.++++|++..++ ...| -++.-|.-=|=..-...+.+++-||.+||.|.+|=-=.-+.+.|++++++|+.++
T Consensus 11 ~~~~~ga~lAveeiNaaGGv~G~~ielv~~D~~~p~~a~~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a~~~~vp~i~~~ 90 (347)
T TIGR03863 11 DRGLDGARLAIEDNNTTGRFLGQTFTLDEVAVRTPEDLVAALKALLAQGVRFFVLDLPAAALLALADAAKAKGALLFNAG 90 (347)
T ss_pred chHHHHHHHHHHHHHhhCCcCCceEEEEEccCCCHHHHHHHHHHHHHCCCCEEEecCChHHHHHHHHHHHhCCcEEEeCC
Confidence 3445889999998642 1222 1222353111111112344566799999999999544567788999999999754
No 189
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=26.80 E-value=73 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHCCCe--EEecCCCCCCchHHHHHHHhcCcEEEecCCcc
Q 007518 557 EEACENGIG--VIAEPGGSIRDGDAIDCCNKYGVALLLTSVRH 597 (600)
Q Consensus 557 e~Aa~aGi~--aIIQPGGSiRD~evI~aa~e~giaMvfTg~RH 597 (600)
+.+.+.|+. .++-.+|++. +++.+.|+++++.||..|.+.
T Consensus 63 ~~~~~~g~~~~~~~~~~~~~~-~~I~~~a~~~~~dlIV~G~~~ 104 (132)
T cd01988 63 RIAASLGVPVHTIIRIDHDIA-SGILRTAKERQADLIIMGWHG 104 (132)
T ss_pred HHhhhcCCceEEEEEecCCHH-HHHHHHHHhcCCCEEEEecCC
Confidence 344456654 4455677754 578999999999999999774
No 190
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=26.73 E-value=89 Score=31.68 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred CcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccC--CCCHHhHHHHHHcCCCceeEEEE---
Q 007518 99 GYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILAR--RDQKHHMDALSEHGIGTFDLVVV--- 173 (600)
Q Consensus 99 GfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILar--r~~~~h~~~l~~~~I~~IDlVVV--- 173 (600)
||+..=.--+...|+++|+.|+.++--.|.+...++.-...-+.-+ +++-. |....+...+++.+...+|.|++
T Consensus 16 G~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG 94 (217)
T PRK11780 16 GSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETR-NVLVESARIARGEIKDLAEADAEDFDALIVPGG 94 (217)
T ss_pred CEehhHHHHHHHHHHHCCCEEEEEeCCCCccccccCcccccccccc-ceeeehhhhhccCCCchhHCChhhCCEEEECCC
Confidence 4444444455778888888888888533333332221100000001 21111 00011123456666777888875
Q ss_pred -----eccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCC
Q 007518 174 -----NLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSE 222 (600)
Q Consensus 174 -----NLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~ 222 (600)
||+.|...- +. + -.|--=-.++|....+-+-|..||.--
T Consensus 95 ~g~~~~l~d~~~~~--------~~-l-r~~~~v~~lv~~f~~~gK~vaAIChgp 138 (217)
T PRK11780 95 FGAAKNLSNFAVKG--------AE-C-TVNPDVKALVRAFHQAGKPIGFICIAP 138 (217)
T ss_pred Cchhhhhhhhcccc--------hh-c-ccCHHHHHHHHHHHHCCCEEEEECHHH
Confidence 122221100 00 0 012223467888899999999998754
No 191
>PRK06398 aldose dehydrogenase; Validated
Probab=26.71 E-value=1.7e+02 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=25.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEech
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGG 107 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgG 107 (600)
+++||+-...-=-..+|+.|.+.|++++.++-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r 38 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEEGSNVINFDI 38 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 57899888655457899999999999998754
No 192
>PRK06194 hypothetical protein; Provisional
Probab=26.68 E-value=2e+02 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=27.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+...--==..+++.|.+.|++++.++-....+++
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~ 45 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDR 45 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence 578888764322357889999999999988755444433
No 193
>PF01939 DUF91: Protein of unknown function DUF91; InterPro: IPR002793 The function of these prokaryotic proteins is unknown. Computational analysis suggests that they may form a restriction endonuclease-like fold, similar to that found in a variety of endonucleases and DNA repair enzymes [].; PDB: 2VLD_A.
Probab=26.57 E-value=55 Score=33.92 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCHHHHHHHhhccCCceEEEecCC
Q 007518 412 FYEIVVAPSYTEEGLEILRGKSKNLRILETKKN 444 (600)
Q Consensus 412 F~EvIIAP~f~~eAleiL~~K~KnlRlL~~~~~ 444 (600)
.=-+++||++++.|.+.|+++ +|+.+++++.
T Consensus 183 VRGilvA~~i~~~a~~ll~~~--glef~~ldp~ 213 (228)
T PF01939_consen 183 VRGILVAPSITPQARELLEDR--GLEFVELDPP 213 (228)
T ss_dssp EEEEEEES-B-HHHHHHHHHH--T-EEEE----
T ss_pred eeEEEECCCCCHHHHHHHHHc--CCEEEEecch
Confidence 346799999999999999777 8998888743
No 194
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=26.46 E-value=1.5e+02 Score=31.59 Aligned_cols=64 Identities=25% Similarity=0.408 Sum_probs=48.8
Q ss_pred CHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhc-----c---------c-------cchHHHHHHHHHC
Q 007518 153 QKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIEN-----I---------D-------IGGPAMIRAAAKN 211 (600)
Q Consensus 153 ~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEn-----I---------D-------IGGpsmiRAAAKN 211 (600)
.++.++.++.+| ||.|++ .||.+.+++ .+.++-|++ + | .|....|+..++.
T Consensus 72 ~eeR~~~l~~~g---VD~~~~--~~F~~~~~~---ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~ 143 (305)
T PRK05627 72 LRDKAELLAELG---VDYVLV--LPFDEEFAK---LSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKE 143 (305)
T ss_pred HHHHHHHHHHcC---CCEEEE--ecCCHHHhc---CCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
Confidence 467777788887 898888 899877764 577777775 2 2 3688999999998
Q ss_pred CCCEEEEeCCCCH
Q 007518 212 HKDVLVVVGSEDY 224 (600)
Q Consensus 212 ~~~V~Vv~dP~DY 224 (600)
|..-+++++|..|
T Consensus 144 ~g~~v~~v~~~~~ 156 (305)
T PRK05627 144 FGFEVTIVPEVKE 156 (305)
T ss_pred cCcEEEEeccEec
Confidence 8877888887643
No 195
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=26.36 E-value=1.5e+02 Score=29.22 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=45.9
Q ss_pred EEEEEeCCeEEEecCCCCcH-----HHHHHHHHHHcCC-----ccCceEEeecccccCCccchHHHHHHCCCeEEe
Q 007518 503 AIVIAKNNCMLGMGSGQPNR-----RESLRIAMKKAGD-----EVKGAALASDAFFPFAWKDAVEEACENGIGVIA 568 (600)
Q Consensus 503 AIV~ak~~~tvGiGaGQ~sR-----Vds~~iA~~kA~~-----~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aII 568 (600)
| |++++|+.|+.|--++.. .+|--.|+.+|.. ++.|+.|-+ -..|=+ -+......+||+.|+
T Consensus 37 A-VIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~-TlEPC~--MC~~aii~agI~rVv 108 (172)
T PRK10860 37 A-VLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYV-TLEPCV--MCAGAMVHSRIGRLV 108 (172)
T ss_pred E-EEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEe-eCCCcH--HHHHHHHHhCCCEEE
Confidence 5 455799999998766432 3555567776643 456777665 378888 999999999999999
No 196
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=26.15 E-value=4.2e+02 Score=29.99 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCCcEEEEEec-CcccHHHHHHHHHHcCcEEEEe----chhHHHHH----HCCCeeEEecccCCCCCCCC---Ccccccc
Q 007518 73 QANKQALISLS-DKKDLASLGIGLQELGYTIVST----GGTATSLE----NAGVSVTKVEQLTCFPEMLD---GRVKTLH 140 (600)
Q Consensus 73 ~~i~rALISVs-DK~glv~~Ak~L~~lGfeIiAT----gGTAk~L~----e~GI~v~~VskiTGfPEild---GRVKTLH 140 (600)
.+.+.+|+-.. =|.| --+.+.|.+.||...+. .++.++++ +.|..+.....+++- +++. ++|--+|
T Consensus 77 ~~~~~VlVvGatG~vG-~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~-d~~~~~~~~~~~~~ 154 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVG-RRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAI-DILKKLVEAVPKGV 154 (411)
T ss_pred CCCCeEEEecCCCchh-HHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeecccccc-chhhhhhhhccccc
Confidence 45567777666 3666 56889999999998886 66777777 555555555554432 3322 3333334
Q ss_pred cccccccccCCC
Q 007518 141 PNIHGGILARRD 152 (600)
Q Consensus 141 PkIhGGILarr~ 152 (600)
+-+--|.-.|.+
T Consensus 155 ~~v~~~~ggrp~ 166 (411)
T KOG1203|consen 155 VIVIKGAGGRPE 166 (411)
T ss_pred eeEEecccCCCC
Confidence 444445444443
No 197
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=26.14 E-value=77 Score=32.65 Aligned_cols=37 Identities=27% Similarity=0.422 Sum_probs=29.0
Q ss_pred hHHHHHHCCCeE------Ee-cCCCCCCchHHHHHHHhcCcEEE
Q 007518 555 AVEEACENGIGV------IA-EPGGSIRDGDAIDCCNKYGVALL 591 (600)
Q Consensus 555 ~ve~Aa~aGi~a------II-QPGGSiRD~evI~aa~e~giaMv 591 (600)
+|+.|--+|.+- |+ .+|.+.|-+|+.++|++||++|+
T Consensus 157 avdLa~lAGl~p~~vicEil~~dG~ma~~~~~~~fA~~~~l~~i 200 (214)
T PRK01792 157 AVDLARLAGYKEAGVICEITNDDGTMARTPEIVEFAKKFGYAVV 200 (214)
T ss_pred HHHHHHHcCCCceEEEEEEecCCCCccCHHHHHHHHHHcCCcEE
Confidence 677877787622 22 45878888899999999999995
No 198
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=25.98 E-value=2.8e+02 Score=28.76 Aligned_cols=53 Identities=25% Similarity=0.525 Sum_probs=42.2
Q ss_pred ceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 539 GAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 539 GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
+..++=|.+-| +.++.|.++|+.-|=-=.|- +|+++++.+.++|.++|....+
T Consensus 75 ~~plsiDT~~~----~vi~~al~~G~~iINsis~~-~~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 75 DVPISVDTYRA----EVARAALEAGADIINDVSGG-QDPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CCeEEEeCCCH----HHHHHHHHcCCCEEEECCCC-CCchhHHHHHHcCCcEEEEeCC
Confidence 67889999875 78999999997755444443 4999999999999999886544
No 199
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=25.81 E-value=80 Score=30.69 Aligned_cols=126 Identities=24% Similarity=0.249 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHH--------HcCcEEEEe-chhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccc-cccCC--
Q 007518 84 DKKDLASLGIGLQ--------ELGYTIVST-GGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGG-ILARR-- 151 (600)
Q Consensus 84 DK~glv~~Ak~L~--------~lGfeIiAT-gGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGG-ILarr-- 151 (600)
.+.++.-|.+.|. -.+..+++. .+|++.|++.|+.+..+-+-.+..|.| +..|...+-++ +|.-+
T Consensus 50 S~~av~~~~~~l~~~~~~~~~~~~~~i~avG~~Ta~~l~~~G~~~~~~~~~~~~s~~L---~~~l~~~~~~~~vl~~~g~ 126 (231)
T PF02602_consen 50 SPNAVRAFFKALQSAGADLRLLKNIKIFAVGPKTAEALREYGFQPDFVPSSEGSSEGL---AELLKEQLRGKRVLILRGE 126 (231)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHSEEEESSHHHHHHHHHTT-EECEE-TTSSSHHHH---HGGHHHCCTTEEEEEEESS
T ss_pred CHHHHHHHHHHHhhhhhhhhhccCCeEEEEcHHHHHHHHHcCCCccccCCCCCCHHHH---HHHHHhhCCCCeEEEEcCC
Confidence 3455555565554 237788888 589999999999987666633332222 22222222211 22222
Q ss_pred -CCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHH
Q 007518 152 -DQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEF 230 (600)
Q Consensus 152 -~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~e 230 (600)
..+.=.+.|+++|+.-.-+.|-.- |=.+ ..+++.+.++-|.+ ++.++++|+-.+.+++.
T Consensus 127 ~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~--------~~~~~~~~l~~~~~-----------~~v~ftS~~~~~~~~~~ 186 (231)
T PF02602_consen 127 GGRPDLPEKLREAGIEVTEVIVYET-PPEE--------LSPELKEALDRGEI-----------DAVVFTSPSAVRAFLEL 186 (231)
T ss_dssp SSCHHHHHHHHHTTEEEEEEECEEE-EEHH--------HHHHHHHHHHHTTT-----------SEEEESSHHHHHHHHHH
T ss_pred CccHHHHHHHHHCCCeEEEEEEeec-cccc--------chHHHHHHHHcCCC-----------CEEEECCHHHHHHHHHH
Confidence 244555678888877555544433 1111 12344444443333 89999999988888877
Q ss_pred Hh
Q 007518 231 LK 232 (600)
Q Consensus 231 L~ 232 (600)
+.
T Consensus 187 ~~ 188 (231)
T PF02602_consen 187 LK 188 (231)
T ss_dssp SS
T ss_pred hH
Confidence 64
No 200
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=25.67 E-value=1.5e+02 Score=29.87 Aligned_cols=95 Identities=25% Similarity=0.239 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCcEEEEechhHHHHHH-CC--CeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHHHcCC
Q 007518 89 ASLGIGLQELGYTIVSTGGTATSLEN-AG--VSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGI 165 (600)
Q Consensus 89 v~~Ak~L~~lGfeIiATgGTAk~L~e-~G--I~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~~~I 165 (600)
-.+|+.|.+.|++++...-+....++ .. +.+..|. .+..|.+.|++.||
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~----------------------------gd~t~~~~L~~agi 64 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVI----------------------------GDATDEDVLEEAGI 64 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEE----------------------------ecCCCHHHHHhcCC
Confidence 46788899999988888777777666 22 2222221 13356677999999
Q ss_pred CceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHH--CCCCEEEEeCCCCHHHHHHHH
Q 007518 166 GTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAK--NHKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 166 ~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK--N~~~V~Vv~dP~DY~~vl~eL 231 (600)
...|+||+=. +.+ .+|+ -|.--|.| |-++|.+-+.-.+|..+++.+
T Consensus 65 ~~aD~vva~t-----------~~d----~~N~-----i~~~la~~~~gv~~viar~~~~~~~~~~~~~ 112 (225)
T COG0569 65 DDADAVVAAT-----------GND----EVNS-----VLALLALKEFGVPRVIARARNPEHEKVLEKL 112 (225)
T ss_pred CcCCEEEEee-----------CCC----HHHH-----HHHHHHHHhcCCCcEEEEecCHHHHHHHHHc
Confidence 9999999731 222 2232 34555666 679999999999999998887
No 201
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=25.63 E-value=76 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.248 Sum_probs=27.6
Q ss_pred hHHHHHHCCCe------EEec-CCCCCCchHHHHHHHhcCcEEEe
Q 007518 555 AVEEACENGIG------VIAE-PGGSIRDGDAIDCCNKYGVALLL 592 (600)
Q Consensus 555 ~ve~Aa~aGi~------aIIQ-PGGSiRD~evI~aa~e~giaMvf 592 (600)
+|+.|--+|.+ -|+- .|++.|=+|++++|+|||++|+-
T Consensus 146 sVdLarlAGl~Pa~VicEi~~~dG~mar~~~~~~fa~~h~l~~it 190 (203)
T COG0108 146 AVDLARLAGLKPAGVICEIMNDDGTMARLPELEEFAKEHGLPVIT 190 (203)
T ss_pred HHHHHHHcCCCCcEEEEEEeCCCccccChHHHHHHHHHcCCcEEE
Confidence 35555555533 2333 78888999999999999999873
No 202
>PRK05872 short chain dehydrogenase; Provisional
Probab=25.53 E-value=1.2e+02 Score=30.92 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=29.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++++.++-+.+.|++
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~ 48 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAA 48 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578988875443477889999999999988776665544
No 203
>PRK06483 dihydromonapterin reductase; Provisional
Probab=25.52 E-value=1.9e+02 Score=27.90 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=26.0
Q ss_pred CcEEEEEecCcccHHHHHHHHHHcCcEEEEechh
Q 007518 75 NKQALISLSDKKDLASLGIGLQELGYTIVSTGGT 108 (600)
Q Consensus 75 i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGT 108 (600)
.+++||+..-.-=-..+|+.|.+.|++++.++-+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence 4578888775544578899999999999887543
No 204
>PRK08228 L(+)-tartrate dehydratase subunit beta; Validated
Probab=25.48 E-value=1e+02 Score=31.72 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=25.0
Q ss_pred HHHHCCCeEEecCCCCCCchHHHHHHHhcCcE
Q 007518 558 EACENGIGVIAEPGGSIRDGDAIDCCNKYGVA 589 (600)
Q Consensus 558 ~Aa~aGi~aIIQPGGSiRD~evI~aa~e~gia 589 (600)
...+.|++++|--||- +++++++|.+||-.
T Consensus 93 ~l~~~G~~~~IGKG~~--~~~~~~a~k~~gav 122 (204)
T PRK08228 93 FIEQTGVKLIVGKGGM--GPGTEEGCQEFKAL 122 (204)
T ss_pred HHHhCCcEEEEECCCC--CHHHHHHHHHcCEE
Confidence 3445699999999985 99999999999855
No 205
>PRK08177 short chain dehydrogenase; Provisional
Probab=25.37 E-value=2e+02 Score=27.63 Aligned_cols=35 Identities=23% Similarity=0.125 Sum_probs=25.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTAT 110 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk 110 (600)
+++||+...--=--.+++.|.+.|++|+.+.-+..
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 36 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQ 36 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 46777776432235688999999999998876544
No 206
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=25.32 E-value=2.2e+02 Score=31.94 Aligned_cols=97 Identities=24% Similarity=0.226 Sum_probs=65.5
Q ss_pred cceeecCCCCCHHHHHHHHHHHHHHhhhc----ceEEEEEeCCeEEEecCCCC-------------cHHHHHHHHHHHcC
Q 007518 472 QFKVVSEKKPQESELHDAEFAWLCVKHVK----SNAIVIAKNNCMLGMGSGQP-------------NRRESLRIAMKKAG 534 (600)
Q Consensus 472 ~~~vVT~~~Pt~~e~~dL~FAwkvvKhvK----SNAIV~ak~~~tvGiGaGQ~-------------sRVds~~iA~~kA~ 534 (600)
.++++-.+ |+---+-|+.-||.++|..+ -+|.|+.|..---|++-|-+ +-...+..|..||-
T Consensus 27 ~~~~L~Gk-lSynNilDad~A~~lv~ef~~~~~~paavivKH~nPCG~A~~~~l~~~~~~~~~~~~~~~~~~~~Ay~rA~ 105 (390)
T PRK07106 27 PIEVLNGR-PGYINFLDALNSWQLVKELKEATGLPAAASFKHVSPAGAAVGLPLSDTLKKIYFVDDMELSPLACAYARAR 105 (390)
T ss_pred CceEecCc-CCcchHHHHHHHHHHHHHhhhccCCCcEEeeeccCcceeeecCCcchhhhheeecccccccHHHHHHHHHH
Confidence 56767666 99999999999999999998 58999999988888888754 12233667788873
Q ss_pred --Cc---cCceEEeecccccCCccchHHHHHHCCCeEEecCCCC
Q 007518 535 --DE---VKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGS 573 (600)
Q Consensus 535 --~~---~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGS 573 (600)
|. ..|.|.-++.. . .+.-+...+.=+..||.||=+
T Consensus 106 ~~Dp~SaFGgivA~N~~v---D-~~tA~~i~~~f~EvIIAP~f~ 145 (390)
T PRK07106 106 GADRMSSYGDFAALSDVC---D-VETAKLLKREVSDGIIAPGYT 145 (390)
T ss_pred hcCCccccCCEEEECCcc---C-HHHHHHHHhhEEEEEEcCCCC
Confidence 32 34444444322 2 133333344446678888754
No 207
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=25.29 E-value=3.1e+02 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=27.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
+++||+....-=-..+++.|.+.|++++.+......+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~ 42 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAA 42 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHH
Confidence 5788888754334788999999999999887665443
No 208
>PRK08226 short chain dehydrogenase; Provisional
Probab=25.27 E-value=6e+02 Score=24.83 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=26.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTA 109 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTA 109 (600)
+++||+....-=-..+++.|.+.|++++.++-+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 5788887765444678899999999999886554
No 209
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=25.02 E-value=1.7e+02 Score=31.34 Aligned_cols=81 Identities=22% Similarity=0.267 Sum_probs=55.7
Q ss_pred CCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc----chHHHHHHHHHCCCCEEE---------
Q 007518 151 RDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI----GGPAMIRAAAKNHKDVLV--------- 217 (600)
Q Consensus 151 r~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI----GGpsmiRAAAKN~~~V~V--------- 217 (600)
.=.++.++++.+.|= +|=+|+||.--.- . +..++++++++||- +|+ ++|.+
T Consensus 207 NltD~~i~~ia~~GG----vigi~~~~~fl~~-~-~~~~~~~~~~hi~~i~~l~G~----------dhVgiGsDfdg~~~ 270 (309)
T cd01301 207 NLTDAQLKAIAETGG----VIGVNFYPAFLSP-G-ADATLDDVVRHIDYIVDLIGI----------DHVGLGSDFDGIGG 270 (309)
T ss_pred CCCHHHHHHHHHcCC----EEEEeeeHHHhCC-C-CCCCHHHHHHHHHHHHHhcCC----------CeEEECcccCCCCC
Confidence 345677788887774 7889999865321 2 26799999999986 332 22222
Q ss_pred ----EeCCCCHHHHHHHHhCCCCCHHHHHHHHHH
Q 007518 218 ----VVGSEDYPALLEFLKGNQDDQQFRRKLAWK 247 (600)
Q Consensus 218 ----v~dP~DY~~vl~eL~~G~~s~~~R~~LA~k 247 (600)
+.|+++|+.++++|..-..|.+.-++++.+
T Consensus 271 ~~~gl~~~~~~~~l~~~L~~rG~s~~~i~~i~g~ 304 (309)
T cd01301 271 TPGGLEDVSDLPNLTAELLERGYSEEEIEKIAGG 304 (309)
T ss_pred CccccCCHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 566899999999997644677766666543
No 210
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.91 E-value=1.6e+02 Score=30.15 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=48.4
Q ss_pred cHHHHHHHHHHHcCC--ccCc----eEEeecccccCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEec
Q 007518 521 NRRESLRIAMKKAGD--EVKG----AALASDAFFPFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLT 593 (600)
Q Consensus 521 sRVds~~iA~~kA~~--~~~G----avlASDAFFPF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfT 593 (600)
.-.++++.|++..++ ...| .++..|.-=|=.....++.+.+. +|.+||.|++|--.. ..+.+++++|++|..
T Consensus 18 ~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~~-~~~~~~~~~ip~v~~ 96 (341)
T cd06341 18 GARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGGS-ALPYLAGAGIPVIGG 96 (341)
T ss_pred HHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccchh-HHHHHhhcCCceecC
Confidence 345678888887632 1222 34444444443333456666666 999999999886543 448899999999976
Q ss_pred CC
Q 007518 594 SV 595 (600)
Q Consensus 594 g~ 595 (600)
+.
T Consensus 97 ~~ 98 (341)
T cd06341 97 AG 98 (341)
T ss_pred CC
Confidence 53
No 211
>PRK07904 short chain dehydrogenase; Provisional
Probab=24.77 E-value=6.6e+02 Score=24.97 Aligned_cols=36 Identities=6% Similarity=-0.134 Sum_probs=25.8
Q ss_pred CCCcEEEEEecCcccHHHHHHHHHHcC-cEEEEechh
Q 007518 73 QANKQALISLSDKKDLASLGIGLQELG-YTIVSTGGT 108 (600)
Q Consensus 73 ~~i~rALISVsDK~glv~~Ak~L~~lG-feIiATgGT 108 (600)
+..+++||+....-==..+|+.|.+.| +.++.+.-.
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~ 42 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALP 42 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 345678888874333367899999885 999888643
No 212
>PRK07062 short chain dehydrogenase; Provisional
Probab=24.71 E-value=1.2e+02 Score=29.93 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=28.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++++.+.-+...|++
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~ 47 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLAS 47 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence 578888875443467999999999999988765554443
No 213
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=24.64 E-value=2e+02 Score=24.60 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=52.2
Q ss_pred HHHHHHHHhhh-----cceEEEEEe-CCeEEEecCCCCc-----HHHHHHHHHHHcCC----ccCceEEeecccccCCcc
Q 007518 489 AEFAWLCVKHV-----KSNAIVIAK-NNCMLGMGSGQPN-----RRESLRIAMKKAGD----EVKGAALASDAFFPFAWK 553 (600)
Q Consensus 489 L~FAwkvvKhv-----KSNAIV~ak-~~~tvGiGaGQ~s-----RVds~~iA~~kA~~----~~~GavlASDAFFPF~~~ 553 (600)
|.-|...++.. .+-+-|+++ ++..|+.|.-... -+.|-..|+.++.. +++|+.|-+ -..|=.
T Consensus 8 m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~lyv-t~ePC~-- 84 (102)
T PF00383_consen 8 MRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARNGGSSLKGCTLYV-TLEPCG-- 84 (102)
T ss_dssp HHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHTTSSGETTEEEEE-EE--BH--
T ss_pred HHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhhccccccCccccc-CCCCHH--
Confidence 44555555554 334555666 8999999975543 35777778887743 367888877 677877
Q ss_pred chHHHHHHCCCeEEe
Q 007518 554 DAVEEACENGIGVIA 568 (600)
Q Consensus 554 D~ve~Aa~aGi~aII 568 (600)
-+......+||+.|+
T Consensus 85 ~C~~ai~~~gi~~vv 99 (102)
T PF00383_consen 85 MCAMAIVHAGIKRVV 99 (102)
T ss_dssp HHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHCcCeEE
Confidence 888999999998875
No 214
>PRK08245 hypothetical protein; Validated
Probab=24.50 E-value=1.8e+02 Score=29.94 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=44.4
Q ss_pred HHHHHHHcCCccCceEEeeccccc--CC-ccchHHHHHH-CCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 526 LRIAMKKAGDEVKGAALASDAFFP--FA-WKDAVEEACE-NGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 526 ~~iA~~kA~~~~~GavlASDAFFP--F~-~~D~ve~Aa~-aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
...|+..+. .|.||.-|+.=+ .. |||-+-.+++ .|+..+|-= |.+||-+-| .+.|++++-.|.
T Consensus 78 ~~~aid~~~---~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~Vid-G~vRD~~ei---~~~gfPvfarg~ 144 (240)
T PRK08245 78 QRAAIETCP---PGCVLVVDARGDARAGSFGDILCTRLKKRGVAGLVTD-GGVRDSPGI---AALGLPVWCAGP 144 (240)
T ss_pred HHHHHhccC---CCeEEEEECCCCCCccccHHHHHHHHHHCCCeEEEEe-eccCCHHHH---hhCCCceEeccc
Confidence 445666664 488888776432 22 8998887655 599998765 788997665 457888887764
No 215
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=24.07 E-value=1.2e+02 Score=33.20 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=27.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
|-|||+.+|--=--.+|+.|.++||.++|.-
T Consensus 30 k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agc 60 (322)
T KOG1610|consen 30 KAVLITGCDSGFGRLLAKKLDKKGFRVFAGC 60 (322)
T ss_pred cEEEEecCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 5699999997666889999999999999974
No 216
>PF13173 AAA_14: AAA domain
Probab=24.06 E-value=1.1e+02 Score=27.37 Aligned_cols=46 Identities=30% Similarity=0.323 Sum_probs=36.1
Q ss_pred cccHHHHHHHHHHcC--cEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCccc--ccccc
Q 007518 85 KKDLASLGIGLQELG--YTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVK--TLHPN 142 (600)
Q Consensus 85 K~glv~~Ak~L~~lG--feIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVK--TLHPk 142 (600)
-.++.+..+.|.+.+ +.|+-||.....|.+. ..+.|.||+. ++||-
T Consensus 73 ~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~------------~~~~l~gr~~~~~l~Pl 122 (128)
T PF13173_consen 73 LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKD------------IAESLAGRVIEIELYPL 122 (128)
T ss_pred hccHHHHHHHHHHhccCceEEEEccchHHHhhc------------ccccCCCeEEEEEECCC
Confidence 467889999999887 8999999988888652 2377889987 66663
No 217
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=24.05 E-value=63 Score=36.04 Aligned_cols=98 Identities=22% Similarity=0.277 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHH------HHHHcCCccCceEEeecccccCCccchH
Q 007518 483 ESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRI------AMKKAGDEVKGAALASDAFFPFAWKDAV 556 (600)
Q Consensus 483 ~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~i------A~~kA~~~~~GavlASDAFFPF~~~D~v 556 (600)
.+.++.|-||-.| =.-||+.+|==+|=.--+.---| ++.+-- ...|.++.-| | -|.=
T Consensus 65 k~~Ie~LTf~Eiv----------~iidgqVLgG~~Gl~k~~sKFvIGAMt~~~i~rY~-~~g~LlIVGn-----R-~~iq 127 (432)
T COG4109 65 KKNIERLTFAEIV----------NIIDGQVLGGRAGLEKELSKFVIGAMTLDAILRYL-DPGGLLIVGN-----R-EDIQ 127 (432)
T ss_pred chhhhhhhHHHHH----------HhhccceeccccchhhhhhhhhhhhhhHHHHHhhc-CCCceEEEec-----H-HHHH
Confidence 4566777777533 34577888755553322211111 222221 2345555544 2 1333
Q ss_pred HHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCccC
Q 007518 557 EEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVRHF 598 (600)
Q Consensus 557 e~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~RHF 598 (600)
..|.+.| .||+-.||=--|+|||+.|||+++|.+-|..-.|
T Consensus 128 ~lAL~~~-~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTF 168 (432)
T COG4109 128 LLALENG-NAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTF 168 (432)
T ss_pred HHHHhcC-CeEEEeCCCCccHHHHHhhcccCCceEEecccce
Confidence 4555665 5788899999999999999999999999876665
No 218
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=24.03 E-value=1.9e+02 Score=25.74 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=54.5
Q ss_pred HHHHHHHHhh--hcceEEEEEeCCeEEEecCCCCc-----HHHHHHHHHHHcCC-----ccCceEEeecccccCCccchH
Q 007518 489 AEFAWLCVKH--VKSNAIVIAKNNCMLGMGSGQPN-----RRESLRIAMKKAGD-----EVKGAALASDAFFPFAWKDAV 556 (600)
Q Consensus 489 L~FAwkvvKh--vKSNAIV~ak~~~tvGiGaGQ~s-----RVds~~iA~~kA~~-----~~~GavlASDAFFPF~~~D~v 556 (600)
+..||+..++ ..-=||++-++|++|+.|--+.. -..|-..|+.++.. .+.|..|-+- ..|=+ -+-
T Consensus 5 l~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t-~EPC~--mC~ 81 (109)
T cd01285 5 IELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTT-LEPCP--MCA 81 (109)
T ss_pred HHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEe-CCChH--HHH
Confidence 4556665432 23336666666999999987764 44566667777754 3688888775 45877 888
Q ss_pred HHHHHCCCeEEe
Q 007518 557 EEACENGIGVIA 568 (600)
Q Consensus 557 e~Aa~aGi~aII 568 (600)
.....+||+.|+
T Consensus 82 ~ai~~~gi~~Vv 93 (109)
T cd01285 82 GALLWARIKRVV 93 (109)
T ss_pred HHHHHHCCCEEE
Confidence 899999999988
No 219
>PLN02389 biotin synthase
Probab=23.96 E-value=1.8e+02 Score=32.06 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=48.4
Q ss_pred ccHHHHHHHHHHcCcEEEEec-----hhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHH
Q 007518 86 KDLASLGIGLQELGYTIVSTG-----GTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDAL 160 (600)
Q Consensus 86 ~glv~~Ak~L~~lGfeIiATg-----GTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l 160 (600)
+.+.++.+.+++.|.+|..|. -+.+.|+++|+....+ .|++ ..-++|+|+++--.. +.-+-++.+
T Consensus 153 e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGld~~~~--------~LeT-s~~~y~~i~~~~s~e-~rl~ti~~a 222 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGLTAYNH--------NLDT-SREYYPNVITTRSYD-DRLETLEAV 222 (379)
T ss_pred HHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCCCEEEe--------eecC-ChHHhCCcCCCCCHH-HHHHHHHHH
Confidence 377788899888899988555 4788999999965433 3444 334556665433111 112445556
Q ss_pred HHcCCCceeEEEEec
Q 007518 161 SEHGIGTFDLVVVNL 175 (600)
Q Consensus 161 ~~~~I~~IDlVVVNL 175 (600)
++.||..--=+++-|
T Consensus 223 ~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 223 REAGISVCSGGIIGL 237 (379)
T ss_pred HHcCCeEeEEEEECC
Confidence 677765433344444
No 220
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.89 E-value=83 Score=32.80 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=23.5
Q ss_pred hHHHHHHCCCeEEecCCCCCCc-hHHHHHHHhcCcEEEe
Q 007518 555 AVEEACENGIGVIAEPGGSIRD-GDAIDCCNKYGVALLL 592 (600)
Q Consensus 555 ~ve~Aa~aGi~aIIQPGGSiRD-~evI~aa~e~giaMvf 592 (600)
-++.|+++||..+|=|.=.... ++.+++|++|||..|+
T Consensus 109 f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 109 FAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 3566777777777766433321 2666777777777665
No 221
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=23.78 E-value=7.8e+02 Score=25.08 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEE----EEechhH--HHHHHCCCeeEEecccCCCCCCCCCccccccccccccc
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTI----VSTGGTA--TSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGI 147 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeI----iATgGTA--k~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGI 147 (600)
+++-+|+|=.......++++.|.++|+.+ +-|.|++ .+|++.|..+-.+-.
T Consensus 37 G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~~g~----------------------- 93 (257)
T TIGR01458 37 SVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLRPMLLVD----------------------- 93 (257)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCCeEEEEC-----------------------
Q ss_pred ccCCCCHHhHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCH
Q 007518 148 LARRDQKHHMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDY 224 (600)
Q Consensus 148 Larr~~~~h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY 224 (600)
+...+++........|.||+-+.+. ..+++.+-+ ++|....+-..+.|.+++..+
T Consensus 94 ------~~~~~~~~~~~~~~~~~Vv~g~~~~--------~~~y~~l~~--------a~~~L~~~~~~~~iatn~~~~ 148 (257)
T TIGR01458 94 ------DRVLPDFDGIDTSDPNCVVMGLAPE--------HFSYQILNQ--------AFRLLLDGAKPLLIAIGKGRY 148 (257)
T ss_pred ------ccHHHHhccCCCCCCCEEEEecccC--------ccCHHHHHH--------HHHHHHcCCCCEEEEeCCCCC
No 222
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.75 E-value=4.2e+02 Score=26.15 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=24.2
Q ss_pred cEEEEEecCc-ccH-HHHHHHHHHcCcEEEEe
Q 007518 76 KQALISLSDK-KDL-ASLGIGLQELGYTIVST 105 (600)
Q Consensus 76 ~rALISVsDK-~gl-v~~Ak~L~~lGfeIiAT 105 (600)
+++||..... .|| ..+|+.|.+.|++++.+
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 5788888764 354 78899999999999876
No 223
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.69 E-value=1.3e+02 Score=31.01 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHcCc-EEEEechhHHHHHHCCCeeEEeccc---CCCCCCCCCcccccccccccccccCCCCHHhHHHHHH
Q 007518 87 DLASLGIGLQELGY-TIVSTGGTATSLENAGVSVTKVEQL---TCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSE 162 (600)
Q Consensus 87 glv~~Ak~L~~lGf-eIiATgGTAk~L~e~GI~v~~Vski---TGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~ 162 (600)
..+++|+.|.+.|+ +|+-|.=.+. ....|.....+.++ ++.|=+++|.++|+ ++++.+.+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~-~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~---------------~d~~~l~~ 94 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS-KRGSEPNYELIENLASECFMPLCYGGGIKTL---------------EQAKKIFS 94 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC-cCCCcccHHHHHHHHHhCCCCEEECCCCCCH---------------HHHHHHHH
Confidence 68899999999886 3333311000 01122222222222 34454555555444 55666665
Q ss_pred cCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCC--CEEEEeCC
Q 007518 163 HGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHK--DVLVVVGS 221 (600)
Q Consensus 163 ~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~--~V~Vv~dP 221 (600)
.| +|-|++|-. ++|+ |.+++..++.|. .+.|=.|.
T Consensus 95 ~G---~~~vvigs~----------------~~~~-----~~~~~~~~~~~~~~~i~vsiD~ 131 (258)
T PRK01033 95 LG---VEKVSINTA----------------ALED-----PDLITEAAERFGSQSVVVSIDV 131 (258)
T ss_pred CC---CCEEEEChH----------------HhcC-----HHHHHHHHHHhCCCcEEEEEEE
Confidence 54 566778821 1222 677888888874 35444443
No 224
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=23.66 E-value=2e+02 Score=28.32 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.5
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++++.++-..+.+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~ 44 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE 44 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 578888775433467889999999999988665554443
No 225
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=23.64 E-value=94 Score=28.73 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=36.1
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
..++.+++.|+.+||=|+.+-....+.+.+++.||++|+.+..
T Consensus 49 ~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~ 91 (269)
T cd01391 49 EALRDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDAT 91 (269)
T ss_pred HHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCC
Confidence 4677888889999999998866666899999999999997653
No 226
>PRK12742 oxidoreductase; Provisional
Probab=23.57 E-value=6.5e+02 Score=24.02 Aligned_cols=31 Identities=16% Similarity=-0.025 Sum_probs=23.4
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEec
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTG 106 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATg 106 (600)
+++||+....-=-..+|+.|.+.|++++.+.
T Consensus 7 k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 5788887643333678899999999998763
No 227
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.26 E-value=2.3e+02 Score=30.36 Aligned_cols=156 Identities=21% Similarity=0.203 Sum_probs=98.3
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
|.|+|+....-==..+|..|.+.|..++=+-++++-|+.-.-.++ + ++-++ +|.++. +--.|.++
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~---~-~~~~~----~v~~~~-------~Dvs~~~~ 77 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELR---K-LGSLE----KVLVLQ-------LDVSDEES 77 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHH---H-hCCcC----ccEEEe-------CccCCHHH
Confidence 467888876544588999999999999999999999887321111 1 23333 343333 22234344
Q ss_pred hHHHHH--HcCCCceeEEEEec----cCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHHHCC-----CCEEEEeCC
Q 007518 156 HMDALS--EHGIGTFDLVVVNL----YPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAAKNH-----KDVLVVVGS 221 (600)
Q Consensus 156 h~~~l~--~~~I~~IDlVVVNL----YPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAAKN~-----~~V~Vv~dP 221 (600)
+.+..+ ....+.+|+.|.|- +-|.+ ..+.+++-+-+|+ |=+.+.|+|...+ -|++|+.+.
T Consensus 78 ~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~------~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSi 151 (282)
T KOG1205|consen 78 VKKFVEWAIRHFGRVDVLVNNAGISLVGFLE------DTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSI 151 (282)
T ss_pred HHHHHHHHHHhcCCCCEEEecCccccccccc------cCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecc
Confidence 333332 24678999999983 22222 2345555555665 7788999998765 456777776
Q ss_pred CCHHHHHHHHhCCCCCHHHH-HHHHHHHHHHHhhhhHHHHHHHH
Q 007518 222 EDYPALLEFLKGNQDDQQFR-RKLAWKAFQHVASYDSAVSEWLW 264 (600)
Q Consensus 222 ~DY~~vl~eL~~G~~s~~~R-~~LA~kAF~~TA~YD~aIa~yl~ 264 (600)
. |..+..++ .+-|.| |+.++.||+.-.++..
T Consensus 152 a-----------G~~~~P~~~~Y~ASK-~Al~~f~etLR~El~~ 183 (282)
T KOG1205|consen 152 A-----------GKMPLPFRSIYSASK-HALEGFFETLRQELIP 183 (282)
T ss_pred c-----------cccCCCcccccchHH-HHHHHHHHHHHHHhhc
Confidence 6 44444444 344444 7888888888777764
No 228
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=23.15 E-value=4.1e+02 Score=25.99 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=0.0
Q ss_pred CCCcEEEEEec----CcccHHHHHHHHHHcCcEEEEech------hHHHHHHCCCeeEEecccCCCCCCCCCcccccccc
Q 007518 73 QANKQALISLS----DKKDLASLGIGLQELGYTIVSTGG------TATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPN 142 (600)
Q Consensus 73 ~~i~rALISVs----DK~glv~~Ak~L~~lGfeIiATgG------TAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPk 142 (600)
++..|+|+-.. ...|.--+++.|.+.||+++-+|. -++..-+....+.-||- ++|.=+||=|+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSs-------l~g~h~~l~~~ 82 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSS-------LDGGHLTLVPG 82 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcCCCEEEEEe-------ccchHHHHHHH
Q ss_pred cccccccCCCCHHhHHHHHHcCCCceeEEE
Q 007518 143 IHGGILARRDQKHHMDALSEHGIGTFDLVV 172 (600)
Q Consensus 143 IhGGILarr~~~~h~~~l~~~~I~~IDlVV 172 (600)
+ .+.|++.|.+.|-+|+
T Consensus 83 l-------------ve~lre~G~~~i~v~~ 99 (143)
T COG2185 83 L-------------VEALREAGVEDILVVV 99 (143)
T ss_pred H-------------HHHHHHhCCcceEEee
No 229
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=23.13 E-value=1.2e+02 Score=30.38 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=36.6
Q ss_pred EeecccccCCccchHHHHHHCCCeEEecCCCC---------C-CchHHHHHHHhcCcEEE
Q 007518 542 LASDAFFPFAWKDAVEEACENGIGVIAEPGGS---------I-RDGDAIDCCNKYGVALL 591 (600)
Q Consensus 542 lASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGS---------i-RD~evI~aa~e~giaMv 591 (600)
+.+.+|..+++-+.++.++++|.+.|=-.++. . .-+++.+.++++||...
T Consensus 5 ~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 5 MFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred eeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 45677776666699999999999987433321 1 12578889999999864
No 230
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=23.06 E-value=4.1e+02 Score=27.26 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=40.3
Q ss_pred ceEEeecccccCCccchHHHHHHCCCeEEecC-CCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 539 GAALASDAFFPFAWKDAVEEACENGIGVIAEP-GGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 539 GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQP-GGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
+..++=|-|-| +.++.|.++|+ .||-- .|.-.|++.++.+.+||.++|...++
T Consensus 76 ~~piSIDT~~~----~v~~aaL~~g~-~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~ 129 (258)
T cd00423 76 DVPISVDTFNA----EVAEAALKAGA-DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred CCeEEEeCCcH----HHHHHHHHhCC-CEEEeCCCCCCChHHHHHHHHcCCCEEEECcC
Confidence 56778888865 88999999994 45543 44433589999999999998887654
No 231
>PLN02173 UDP-glucosyl transferase family protein
Probab=22.96 E-value=1.5e+02 Score=33.27 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCcEE--EEechhHHHHHHC---CCeeEEecccCCCCC-CCCCcccccccccccccccCCCCHHhHHHHH
Q 007518 88 LASLGIGLQELGYTI--VSTGGTATSLENA---GVSVTKVEQLTCFPE-MLDGRVKTLHPNIHGGILARRDQKHHMDALS 161 (600)
Q Consensus 88 lv~~Ak~L~~lGfeI--iATgGTAk~L~e~---GI~v~~VskiTGfPE-ildGRVKTLHPkIhGGILarr~~~~h~~~l~ 161 (600)
+++||+.|...|+.| +.|....+.+... +|.+..+.+ |.|+ ..+ .+.++.-+=..+.++-.+.=.+-++
T Consensus 22 ~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd--glp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (449)
T PLN02173 22 IRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD--GYDQGGFS---SAGSVPEYLQNFKTFGSKTVADIIR 96 (449)
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC--CCCCcccc---cccCHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HcCC--CceeEEEEec-cCcHHhhhc
Q 007518 162 EHGI--GTFDLVVVNL-YPFYDKVTS 184 (600)
Q Consensus 162 ~~~I--~~IDlVVVNL-YPFe~tv~~ 184 (600)
.+.- .|++.||.++ .||...|++
T Consensus 97 ~~~~~~~Pv~cvV~D~f~~Wa~dVA~ 122 (449)
T PLN02173 97 KHQSTDNPITCIVYDSFMPWALDLAR 122 (449)
T ss_pred HhhccCCCceEEEECCcchhHHHHHH
No 232
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.84 E-value=2.3e+02 Score=30.30 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=50.7
Q ss_pred CcEEEEEecC---cccHHHHHHHHHHcCcE-EEEechh------HHHHHHCCCeeEEecccCCCCCCCCCcccccccccc
Q 007518 75 NKQALISLSD---KKDLASLGIGLQELGYT-IVSTGGT------ATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIH 144 (600)
Q Consensus 75 i~rALISVsD---K~glv~~Ak~L~~lGfe-IiATgGT------Ak~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIh 144 (600)
+..+.++..+ ...+.++.+.+.+.|+. -+.|.|| ++.|.++|+....|| |||--+-.|=++.
T Consensus 63 ~~~v~~~GGEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iS--------ldg~~~e~~d~ir 134 (378)
T PRK05301 63 ALQLHFSGGEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLS--------FQDSDPELNDRLA 134 (378)
T ss_pred CcEEEEECCccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEE--------ecCCCHHHHHHHc
Confidence 3455565553 35689999999999975 3667775 567888998766665 3332233444454
Q ss_pred ccc-ccCCCCHHhHHHHHHcCCC
Q 007518 145 GGI-LARRDQKHHMDALSEHGIG 166 (600)
Q Consensus 145 GGI-Larr~~~~h~~~l~~~~I~ 166 (600)
|+- ...+ .-+.++.++++|+.
T Consensus 135 g~~g~f~~-~~~~i~~l~~~g~~ 156 (378)
T PRK05301 135 GTKGAFAK-KLAVARLVKAHGYP 156 (378)
T ss_pred CCCchHHH-HHHHHHHHHHCCCc
Confidence 432 1111 22456667888875
No 233
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=22.81 E-value=1e+02 Score=29.64 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=19.7
Q ss_pred HHHHHHCCCeEEecCCCCCC--chHHHHHHHhcCcEEEe
Q 007518 556 VEEACENGIGVIAEPGGSIR--DGDAIDCCNKYGVALLL 592 (600)
Q Consensus 556 ve~Aa~aGi~aIIQPGGSiR--D~evI~aa~e~giaMvf 592 (600)
++.++++|+..|+=|+-+-- .++++++|.++|+.++.
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEE
Confidence 35556666666665544321 24556666666665553
No 234
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=22.76 E-value=3.3e+02 Score=28.09 Aligned_cols=71 Identities=20% Similarity=0.274 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHHHcCcEEEEechhH---------HHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCH
Q 007518 84 DKKDLASLGIGLQELGYTIVSTGGTA---------TSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQK 154 (600)
Q Consensus 84 DK~glv~~Ak~L~~lGfeIiATgGTA---------k~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~ 154 (600)
....+.++.+.|.+.|++.+.+|.=. +..++.|+ +-+.| |..++.+
T Consensus 70 ~e~~~e~l~~~l~~~gv~~vv~GdI~s~~qr~~~e~v~~~lgl-------------------~~~~P------LW~~~~~ 124 (223)
T TIGR00290 70 EEDEVEELKGILHTLDVEAVVFGAIYSEYQKTRIERVCRELGL-------------------KSFAP------LWHRDPE 124 (223)
T ss_pred ccHHHHHHHHHHHHcCCCEEEECCcccHHHHHHHHHHHHhcCC-------------------EEecc------ccCCCHH
Confidence 34677888899999999999999854 33444444 44445 5678889
Q ss_pred HhHHHHHHcCCCceeEEEEeccCcHH
Q 007518 155 HHMDALSEHGIGTFDLVVVNLYPFYD 180 (600)
Q Consensus 155 ~h~~~l~~~~I~~IDlVVVNLYPFe~ 180 (600)
+-+++|-++|++.| +|.||-|.+.+
T Consensus 125 ~ll~e~i~~G~~ai-Iv~v~a~gL~~ 149 (223)
T TIGR00290 125 KLMEEFVEEKFEAR-IIAVAAEGLDE 149 (223)
T ss_pred HHHHHHHHcCCeEE-EEEEecCCCCh
Confidence 99999999999854 88899987753
No 235
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=22.71 E-value=1.2e+02 Score=25.29 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=25.5
Q ss_pred HCCCeEEecC-CCCCCchHHHHHHHhcCcEEEecCCc
Q 007518 561 ENGIGVIAEP-GGSIRDGDAIDCCNKYGVALLLTSVR 596 (600)
Q Consensus 561 ~aGi~aIIQP-GGSiRD~evI~aa~e~giaMvfTg~R 596 (600)
..|+....+- .|+. .+++++.++++++.|+..|.+
T Consensus 67 ~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~ 102 (130)
T cd00293 67 EAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSR 102 (130)
T ss_pred cCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCC
Confidence 3566554332 2333 789999999999999999975
No 236
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.69 E-value=2.9e+02 Score=29.43 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=49.9
Q ss_pred HHHHHHHHHCCC---CEEEEeCCCCHHHHHHHHhCC---------CCCHHHHHHHHHHHHHHHhhhhHHH
Q 007518 202 PAMIRAAAKNHK---DVLVVVGSEDYPALLEFLKGN---------QDDQQFRRKLAWKAFQHVASYDSAV 259 (600)
Q Consensus 202 psmiRAAAKN~~---~V~Vv~dP~DY~~vl~eL~~G---------~~s~~~R~~LA~kAF~~TA~YD~aI 259 (600)
..|+|++|+.+. -|+|-.|..|++.+.+.|+.| ..+.+...+++.+.-..+..|+..+
T Consensus 64 ~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 64 KNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred HHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 678999999985 399999999999999988753 4788999999999999999998766
No 237
>PRK08265 short chain dehydrogenase; Provisional
Probab=22.67 E-value=1.5e+02 Score=29.37 Aligned_cols=38 Identities=16% Similarity=0.023 Sum_probs=28.2
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+|+.|.+.|++++.++-....++
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~ 44 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGA 44 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 57888887544447889999999999998865544443
No 238
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.64 E-value=2.6e+02 Score=28.07 Aligned_cols=39 Identities=23% Similarity=0.086 Sum_probs=28.5
Q ss_pred chHHHHHHCCCeEEecCCCCCCc---------------hHHHHHHHhcCcEEEe
Q 007518 554 DAVEEACENGIGVIAEPGGSIRD---------------GDAIDCCNKYGVALLL 592 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD---------------~evI~aa~e~giaMvf 592 (600)
++|+.|.+.|++.|.-+.|.... .++.+.|.++||.+.+
T Consensus 89 ~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 89 AAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 78889999999988766665421 2345667788998877
No 239
>PRK06172 short chain dehydrogenase; Provisional
Probab=22.62 E-value=1.3e+02 Score=29.31 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=29.8
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+-....=-..+++.|.+.|++++.+.-+.+-++
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~ 45 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGE 45 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 57888877655557789999999999999987765544
No 240
>PRK05939 hypothetical protein; Provisional
Probab=22.61 E-value=1.8e+02 Score=31.79 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCccCceEEeeccccc---------
Q 007518 479 KKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKGAALASDAFFP--------- 549 (600)
Q Consensus 479 ~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~GavlASDAFFP--------- 549 (600)
..|+-+++++.+..+.=.++ +| -..+| |+=+.++-.++-+.|+ -|+.++..||
T Consensus 45 g~p~~~~lE~~la~leg~~~----~v---------~~ssG-~~Ai~~~l~all~~Gd----~Vv~~~~~y~~t~~~~~~l 106 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVG----TV---------CFATG-MAAIAAVFLTLLRAGD----HLVSSQFLFGNTNSLFGTL 106 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCe----EE---------EeCCH-HHHHHHHHHHHcCCCC----EEEECCCccccHHHHHHHH
Confidence 45888888888877643332 33 34445 4444444444444443 3555554332
Q ss_pred -----------CCccchHHHHHHCCCeEEec-----CCCCCCc-hHHHHHHHhcCcEEEe
Q 007518 550 -----------FAWKDAVEEACENGIGVIAE-----PGGSIRD-GDAIDCCNKYGVALLL 592 (600)
Q Consensus 550 -----------F~~~D~ve~Aa~aGi~aIIQ-----PGGSiRD-~evI~aa~e~giaMvf 592 (600)
..--|.++.+..-..+.|+= |.|.+.| +++.+.|.++|+.++.
T Consensus 107 ~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~liv 166 (397)
T PRK05939 107 RGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVV 166 (397)
T ss_pred HhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEE
Confidence 11014566666666666654 7888888 5788889999987764
No 241
>PRK10490 sensor protein KdpD; Provisional
Probab=22.60 E-value=1e+02 Score=37.26 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=61.3
Q ss_pred EeCCeEEEecCCCCcHHHHHHHHHHHcCCccCc----eEEeec--ccccCC----ccchHHHHHHCCCeEEecCCCCCCc
Q 007518 507 AKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKG----AALASD--AFFPFA----WKDAVEEACENGIGVIAEPGGSIRD 576 (600)
Q Consensus 507 ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~G----avlASD--AFFPF~----~~D~ve~Aa~aGi~aIIQPGGSiRD 576 (600)
+++.-+|.|+.+..|. ..+|-|.+-|.. .++ ..+.+. .+++-. --+.++.|.+.|.+-++.+|+.+-
T Consensus 249 ~~eriLV~v~~~~~~~-~lIr~~~rlA~~-~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~dva- 325 (895)
T PRK10490 249 TRDAILLCIGHNTGSE-KLVRTAARLAAR-LGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPAEE- 325 (895)
T ss_pred cCCeEEEEECCCcchH-HHHHHHHHHHHh-cCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH-
Confidence 5666799999997774 666777766643 222 222221 222222 015678899999999999998775
Q ss_pred hHHHHHHHhcCcEEEecCCcc
Q 007518 577 GDAIDCCNKYGVALLLTSVRH 597 (600)
Q Consensus 577 ~evI~aa~e~giaMvfTg~RH 597 (600)
+.+++.|.++|++.+.-|...
T Consensus 326 ~~i~~~A~~~~vt~IViG~s~ 346 (895)
T PRK10490 326 KAVLRYAREHNLGKIIIGRRA 346 (895)
T ss_pred HHHHHHHHHhCCCEEEECCCC
Confidence 688999999999999999753
No 242
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=22.41 E-value=3.9e+02 Score=26.54 Aligned_cols=66 Identities=12% Similarity=0.199 Sum_probs=36.5
Q ss_pred HHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhccccchHHHHHHHHH---CCCCEEE-EeCCCCHHHHHHHHhC
Q 007518 161 SEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAK---NHKDVLV-VVGSEDYPALLEFLKG 233 (600)
Q Consensus 161 ~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAK---N~~~V~V-v~dP~DY~~vl~eL~~ 233 (600)
+.++.+++|+|++|+-|+-.. .+ ..+.....+. --..++.+.+ +--.+++ +..+++|..++++|+.
T Consensus 111 ~~~~~~~~D~V~S~~~~~~~g--~~-~~d~~~~~~~----~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~ 180 (209)
T PRK11188 111 ERVGDSKVQVVMSDMAPNMSG--TP-AVDIPRAMYL----VELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS 180 (209)
T ss_pred HHhCCCCCCEEecCCCCccCC--Ch-HHHHHHHHHH----HHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh
Confidence 446778999999998775421 10 1111110000 0133444433 3444444 6788999999998853
No 243
>PRK07109 short chain dehydrogenase; Provisional
Probab=22.41 E-value=2.9e+02 Score=29.05 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=28.7
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLEN 114 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e 114 (600)
+++||+....-=-..+|+.|.+.|++++.+.-+...|++
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~ 47 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEA 47 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 468888764433367889999999999988766655544
No 244
>KOG3020 consensus TatD-related DNase [Replication, recombination and repair]
Probab=22.22 E-value=1.1e+02 Score=32.86 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=37.3
Q ss_pred ccCCccchHHHHHHCCCeEEecCCCCCCch-HHHHHHHhcCcEEEe
Q 007518 548 FPFAWKDAVEEACENGIGVIAEPGGSIRDG-DAIDCCNKYGVALLL 592 (600)
Q Consensus 548 FPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~-evI~aa~e~giaMvf 592 (600)
.++.|.+.++.|.+.|+...+--|||..|. ++++.+.++.-.++.
T Consensus 30 ~~~d~s~v~~~a~~~~v~~~~v~gt~~~d~~~~~~l~~~y~~~v~~ 75 (296)
T KOG3020|consen 30 SDSDASQVLERAVQAGVSKLIVTGTSLKDSKEALELAEKYPGSVYP 75 (296)
T ss_pred CCccchHHHHHHHhccceEEEEeCCCcchHHHHHHHHhhCCCceee
Confidence 345555899999999999999999999997 899999999433333
No 245
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=22.22 E-value=1.1e+02 Score=32.02 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=28.8
Q ss_pred chHHHHHHCCCeEEe----cCCCCCCc--hHHHHHHHhcCcEEEecC
Q 007518 554 DAVEEACENGIGVIA----EPGGSIRD--GDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 554 D~ve~Aa~aGi~aII----QPGGSiRD--~evI~aa~e~giaMvfTg 594 (600)
|.++.+.....++|+ .|.|.+.| +++.+.|++||+.++.=+
T Consensus 150 ~~l~~~i~~~t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~ 196 (398)
T cd00613 150 EALKEEVSEEVAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDG 196 (398)
T ss_pred HHHHHhcCCCeEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEe
Confidence 556665555555442 57788877 688899999999887744
No 246
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=22.16 E-value=90 Score=31.82 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHcCCc---cCceEE-------e-ecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhc
Q 007518 518 GQPNRRESLRIAMKKAGDE---VKGAAL-------A-SDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKY 586 (600)
Q Consensus 518 GQ~sRVds~~iA~~kA~~~---~~Gavl-------A-SDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~ 586 (600)
|+.. ..++++|++....+ +.|--| . +|.+-.- ..+....+.||.+||=|..|---.-+-..|+++
T Consensus 11 g~~~-~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~---~~~~~li~~~V~aiiG~~~S~~~~av~~~~~~~ 86 (327)
T cd06382 11 DSGE-ELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETT---KKVCDLLQQGVAAIFGPSSSEASSIVQSICDAK 86 (327)
T ss_pred chHH-HHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHH---HHhhhhhhcCcEEEECCCChhHHHHHHHHHhcc
Confidence 5444 37889999886432 222211 1 4443221 333444445999999998885555778889999
Q ss_pred CcEEEecC
Q 007518 587 GVALLLTS 594 (600)
Q Consensus 587 giaMvfTg 594 (600)
+|+||.++
T Consensus 87 ~vP~Is~~ 94 (327)
T cd06382 87 EIPHIQTR 94 (327)
T ss_pred CCCceecc
Confidence 99999864
No 247
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=22.08 E-value=1.1e+02 Score=30.79 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCccCc---eEEeecccc-cCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 522 RRESLRIAMKKAGDEVKG---AALASDAFF-PFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 522 RVds~~iA~~kA~~~~~G---avlASDAFF-PF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
-..++++|++.++....| -++..|-=. |=.-...++.+.+. ||.+||-|.+|--...+.+.++++||++|..+
T Consensus 19 ~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~~~~~ip~v~~~ 96 (333)
T cd06332 19 IRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSLTESGTFLISPN 96 (333)
T ss_pred HHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHHHHHHHHHhhcCCeEEecC
Confidence 457788888887532223 233333211 10001245666665 99999998777555688899999999999865
No 248
>PRK06953 short chain dehydrogenase; Provisional
Probab=22.07 E-value=2.9e+02 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=26.0
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
+++||+....-=--.+++.|.+.|++++.+.-+...+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~ 38 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL 38 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH
Confidence 5677776643333578899999999999986654433
No 249
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=22.00 E-value=1.2e+02 Score=30.57 Aligned_cols=41 Identities=10% Similarity=0.069 Sum_probs=0.0
Q ss_pred chHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 554 DAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
...+.+.+.||.+||-|.+|---..+.+.|++.||+++.++
T Consensus 57 ~~~~~li~~~v~aiiG~~~s~~~~~~~~~~~~~~ip~i~~~ 97 (334)
T cd06342 57 AVAQKLVDDGVVGVVGHLNSGVTIPASPIYADAGIVMISPA 97 (334)
T ss_pred HHHHHHHhCCceEEECCCccHhHHHhHHHHHhCCCeEEecC
No 250
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=21.91 E-value=2.3e+02 Score=29.95 Aligned_cols=124 Identities=21% Similarity=0.196 Sum_probs=73.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
|.+||+..---=-...|+.|.+.|++++.++--.+.|++.--+ +-.|+++.+- |--+|.++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~------------~~~~~~~~~~-------~DVtD~~~ 67 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADE------------IGAGAALALA-------LDVTDRAA 67 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHh------------hccCceEEEe-------eccCCHHH
Confidence 5577766532222678899999999999999988888873221 1113333322 11233333
Q ss_pred hHHHH--HHcCCCceeEEEEe--ccCcHHhhhcCCCCChhhhhhccccchHHHHH---HH-----HHCCCCEEEEeCCC
Q 007518 156 HMDAL--SEHGIGTFDLVVVN--LYPFYDKVTSAGGIDFEDGIENIDIGGPAMIR---AA-----AKNHKDVLVVVGSE 222 (600)
Q Consensus 156 h~~~l--~~~~I~~IDlVVVN--LYPFe~tv~~~~~~~~ee~IEnIDIGGpsmiR---AA-----AKN~~~V~Vv~dP~ 222 (600)
-.+.+ -....+.||++|.| |||- ..+.+ .+.+|.-.-||+==-.+++ |. ++|.-+|..+.+-+
T Consensus 68 ~~~~i~~~~~~~g~iDiLvNNAGl~~g-~~~~~---~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA 142 (246)
T COG4221 68 VEAAIEALPEEFGRIDILVNNAGLALG-DPLDE---ADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA 142 (246)
T ss_pred HHHHHHHHHHhhCcccEEEecCCCCcC-Chhhh---CCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence 11222 24567899999999 7877 44443 4566666666764444443 32 45666777776654
No 251
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=21.88 E-value=16 Score=35.23 Aligned_cols=69 Identities=23% Similarity=0.276 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHHcCcEEE--Ee----------chhHHHHHHC--CCeeEEecccCCCCCCCCCcccccccccccccccCC
Q 007518 86 KDLASLGIGLQELGYTIV--ST----------GGTATSLENA--GVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARR 151 (600)
Q Consensus 86 ~glv~~Ak~L~~lGfeIi--AT----------gGTAk~L~e~--GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr 151 (600)
.|..+..+.|.+.|++++ +| ..|.+.|+++ +++...+- +++. |++ + +|=+.-.
T Consensus 76 ~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~-~~~~--------K~~---v-~~DvlID 142 (191)
T PF06941_consen 76 PGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLI-FTGD--------KTL---V-GGDVLID 142 (191)
T ss_dssp TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEE-EESS--------GGG---C---SEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEE-EecC--------CCe---E-eccEEec
Confidence 678999999999996655 22 3678999998 66643221 1222 443 2 3334467
Q ss_pred CCHHhHHHHHHcCCCc
Q 007518 152 DQKHHMDALSEHGIGT 167 (600)
Q Consensus 152 ~~~~h~~~l~~~~I~~ 167 (600)
|.++++.++...|+..
T Consensus 143 D~~~n~~~~~~~g~~~ 158 (191)
T PF06941_consen 143 DRPHNLEQFANAGIPV 158 (191)
T ss_dssp SSSHHHSS-SSESSEE
T ss_pred CChHHHHhccCCCceE
Confidence 8899999988888875
No 252
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=21.87 E-value=1.3e+02 Score=32.04 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=31.8
Q ss_pred cccCCccchHHHHHHCCCeEEec-----CCCCCCc-----hHHHHHHHhcCcEEEe
Q 007518 547 FFPFAWKDAVEEACENGIGVIAE-----PGGSIRD-----GDAIDCCNKYGVALLL 592 (600)
Q Consensus 547 FFPF~~~D~ve~Aa~aGi~aIIQ-----PGGSiRD-----~evI~aa~e~giaMvf 592 (600)
+|||.--|.++.+.....++||= |+|.+=+ +++.+.|++||+.+++
T Consensus 171 ~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~ 226 (401)
T PRK00854 171 VVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLIL 226 (401)
T ss_pred EeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45665124566666556666553 6787776 5788999999999875
No 253
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.85 E-value=1.1e+02 Score=29.62 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=7.7
Q ss_pred hHHHHHHCCCeEEec
Q 007518 555 AVEEACENGIGVIAE 569 (600)
Q Consensus 555 ~ve~Aa~aGi~aIIQ 569 (600)
.++.+.+.|+..++.
T Consensus 94 ~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 94 AVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCEEEEE
Confidence 444555555555543
No 254
>PRK09989 hypothetical protein; Provisional
Probab=21.83 E-value=1.1e+02 Score=30.76 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=34.6
Q ss_pred cCCccchHHHHHHCCCeEE-e-cCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 549 PFAWKDAVEEACENGIGVI-A-EPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 549 PF~~~D~ve~Aa~aGi~aI-I-QPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
||. +.++.++++|..+| + .|.| ...+|+.+..+++||.+...+
T Consensus 16 ~l~--~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~v~~~~ 60 (258)
T PRK09989 16 PFI--ERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLTLALFN 60 (258)
T ss_pred CHH--HHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCcEEEec
Confidence 667 99999999999887 3 5554 456799999999999887643
No 255
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.62 E-value=2e+02 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=27.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSL 112 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L 112 (600)
+++||+....-=-..+++.|.+.|++++.+.-+...+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~ 43 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA 43 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4688887655444778899999999999987665443
No 256
>PRK00208 thiG thiazole synthase; Reviewed
Probab=21.60 E-value=1.7e+02 Score=30.98 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=57.5
Q ss_pred CCCcEEEEE-----ecCcccHHHHHHHHHHcCcEEE----EechhHHHHHHCCCeeEEe--ccc-CCC----CCCCCCcc
Q 007518 73 QANKQALIS-----LSDKKDLASLGIGLQELGYTIV----STGGTATSLENAGVSVTKV--EQL-TCF----PEMLDGRV 136 (600)
Q Consensus 73 ~~i~rALIS-----VsDK~glv~~Ak~L~~lGfeIi----ATgGTAk~L~e~GI~v~~V--ski-TGf----PEildGRV 136 (600)
.+||-=.|. ..|-...++-|+.|.+.||+++ -+.=+++.|.+.|-.+... +-| +|. |+.+.==+
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~ 171 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIII 171 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH
Confidence 477644443 2356777888888999999998 3466899999999887744 322 111 11110000
Q ss_pred ccc-ccccccccccCCCCHHhHHHHHHcCCCceeEEEEe
Q 007518 137 KTL-HPNIHGGILARRDQKHHMDALSEHGIGTFDLVVVN 174 (600)
Q Consensus 137 KTL-HPkIhGGILarr~~~~h~~~l~~~~I~~IDlVVVN 174 (600)
+.. -|-|-+|=. ..++|..++-++|. |-|+||
T Consensus 172 e~~~vpVIveaGI---~tpeda~~AmelGA---dgVlV~ 204 (250)
T PRK00208 172 EQADVPVIVDAGI---GTPSDAAQAMELGA---DAVLLN 204 (250)
T ss_pred HhcCCeEEEeCCC---CCHHHHHHHHHcCC---CEEEEC
Confidence 101 244444433 25778877777765 677777
No 257
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.59 E-value=4.4e+02 Score=27.89 Aligned_cols=102 Identities=19% Similarity=0.303 Sum_probs=72.3
Q ss_pred EEEEceeEEEecCCCCCCCcccceeecCCCCCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHH
Q 007518 451 LRQVGGGWLAQDSDDLTPEDIQFKVVSEKKPQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAM 530 (600)
Q Consensus 451 ~r~v~GG~LvQ~~D~~~~~~~~~~vVT~~~Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~ 530 (600)
.+.+.=|.++++.|.. --.||+.+|++-..+|+.-++.++-..=-=-++|..- |=|+|++..+..++...
T Consensus 120 ~e~i~~gYiV~~p~~~------va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~YlEa----gsga~~Pv~~e~v~~v~ 189 (240)
T COG1646 120 LEVIPEGYIVVNPDGT------VAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYLEA----GSGAGDPVPVEMVSRVL 189 (240)
T ss_pred heecceEEEEECCCCc------eeeecccccCCCCcHHHHHHHHHHHHHhCCeEEEEEe----cCCCCCCcCHHHHHHhh
Confidence 5667789999999853 3568999999999999988888776433334555543 55889999998886554
Q ss_pred HHcCCccCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 531 KKAGDEVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 531 ~kA~~~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
.++. + | =||-||+.|.-...-+.|--|+.||.
T Consensus 190 ~~~~------------L--i-------------------vGGGIrs~E~A~~~a~agAD~IVtG~ 221 (240)
T COG1646 190 SDTP------------L--I-------------------VGGGIRSPEQAREMAEAGADTIVTGT 221 (240)
T ss_pred ccce------------E--E-------------------EcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 4330 0 1 27777777777777777777777774
No 258
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=21.51 E-value=28 Score=37.59 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=64.5
Q ss_pred EEecCcccHHHHHHHHHH----cCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHH
Q 007518 80 ISLSDKKDLASLGIGLQE----LGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKH 155 (600)
Q Consensus 80 ISVsDK~glv~~Ak~L~~----lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~ 155 (600)
++..|.+.++++++...= .|.|.....|.++.|++.||++ ..|...+--+. +|...
T Consensus 11 ~~~~d~~~l~~~~~~~~id~vi~g~E~~l~~~~~d~l~~~Gi~~-------------------~g~s~~a~~l~-~dK~~ 70 (379)
T PRK13790 11 ISESDHQAILDFAKQQNVDWVVIGPEQPLIDGLADILRANGFKV-------------------FGPNKQAAQIE-GSKLF 70 (379)
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECCcHHHHHHHHHHHHhCCCcE-------------------ECCCHHHHHHh-CCHHH
Confidence 345677888888876322 1222222346677788888753 22333333333 23333
Q ss_pred hHHHHHHcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcc-ccchHHHHHHHHHC-CCCEEEEeCCCCHHHHHHHH
Q 007518 156 HMDALSEHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENI-DIGGPAMIRAAAKN-HKDVLVVVGSEDYPALLEFL 231 (600)
Q Consensus 156 h~~~l~~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnI-DIGGpsmiRAAAKN-~~~V~Vv~dP~DY~~vl~eL 231 (600)
-.+-|+++||....-..++ +.+++.+-+ .+|.|-+|.+.--- -+.|.++.+.++....++++
T Consensus 71 ~k~~l~~~gIptp~~~~~~--------------~~~ea~~~~~~~g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~ 134 (379)
T PRK13790 71 AKKIMEKYNIPTADYKEVE--------------RKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIM 134 (379)
T ss_pred HHHHHHHCCCCCCCEEEEC--------------CHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH
Confidence 3356899999977644321 123333322 35778887765211 14678887777665555543
No 259
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=21.48 E-value=77 Score=31.06 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=27.6
Q ss_pred HHCCCCEEEEeCCCCHHHHHHHHhCCCCCHHHHHHHHH
Q 007518 209 AKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAW 246 (600)
Q Consensus 209 AKN~~~V~Vv~dP~DY~~vl~eL~~G~~s~~~R~~LA~ 246 (600)
-.|+-.+|.=+|+++|+.+.++|+ ++|+++..
T Consensus 119 ~R~~s~~T~~vs~~~~~ki~~~i~------~fRk~i~~ 150 (171)
T PF14394_consen 119 ERDFSGLTMSVSREDYEKIKKEIR------EFRKKIIA 150 (171)
T ss_pred ccceeeeEEEeCHHHHHHHHHHHH------HHHHHHHH
Confidence 367888889999999999999996 89999863
No 260
>PRK08251 short chain dehydrogenase; Provisional
Probab=21.44 E-value=5.1e+02 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=26.9
Q ss_pred cEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 76 KQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 76 ~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
+++||+....-=-..+++.|.+.|++++.++-+...++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~ 40 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLE 40 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 46777776433336788999999999988876555444
No 261
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=21.27 E-value=1.3e+02 Score=32.19 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=30.9
Q ss_pred cccCCccchHHHHHHCCCeEEe-----cCCCCCCc-----hHHHHHHHhcCcEEEe
Q 007518 547 FFPFAWKDAVEEACENGIGVIA-----EPGGSIRD-----GDAIDCCNKYGVALLL 592 (600)
Q Consensus 547 FFPF~~~D~ve~Aa~aGi~aII-----QPGGSiRD-----~evI~aa~e~giaMvf 592 (600)
++||+.-|.++.+.+..+.+|| -|+|.+-+ +++.+.|++||+.+++
T Consensus 170 ~~~~~d~~~l~~~i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 225 (396)
T PRK04073 170 KIPYGDLEALKAAITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIA 225 (396)
T ss_pred EeCCCCHHHHHHhcccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 4566522455555544555543 47888766 4799999999998875
No 262
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=21.26 E-value=7.9e+02 Score=26.68 Aligned_cols=110 Identities=19% Similarity=0.185 Sum_probs=68.8
Q ss_pred cEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCCHHhHHHHHHcCC--CceeEEEEeccC
Q 007518 100 YTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQKHHMDALSEHGI--GTFDLVVVNLYP 177 (600)
Q Consensus 100 feIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~~~h~~~l~~~~I--~~IDlVVVNLYP 177 (600)
.-+++.....++.++.|.......+... -.|.-+ ..+...-++.|.+..- ..|=+++.|+-|
T Consensus 87 l~l~Tk~~~~~fy~klGF~~i~~~~~~~--v~mE~~--------------~~~~~~y~~~l~~~~~~~~~i~~~~g~fdP 150 (332)
T TIGR00124 87 LFIFTKPEYAALFEYCGFKTLAEAKDQG--VLLENS--------------ATRLKRYCSTLPKPRTPGNKIGSIVMNANP 150 (332)
T ss_pred EEEEECchHHHHHHHcCCEEeeeecceE--EEEecc--------------CcCHHHHHHHHHHhccCCCcEEEEEeCcCC
Confidence 3455656667778888875443322100 001100 0122344455543332 479999999999
Q ss_pred cHHhhhcCCCCChhhhhhccccchHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Q 007518 178 FYDKVTSAGGIDFEDGIENIDIGGPAMIRAAAKNHKDVLVVVGSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVA 253 (600)
Q Consensus 178 Fe~tv~~~~~~~~ee~IEnIDIGGpsmiRAAAKN~~~V~Vv~dP~DY~~vl~eL~~G~~s~~~R~~LA~kAF~~TA 253 (600)
|-. |=-.|++-|++.++.|.|.+--+| ..-.|.+.|.+|..+++.+..
T Consensus 151 ~t~-------------------GH~~li~~A~~~~d~~~v~v~~~~---------~~~f~~~~R~~~v~~~~~~~~ 198 (332)
T TIGR00124 151 FTN-------------------GHRYLIEQAARQCDWLHLFVVKED---------ASLFSYDERFALVKQGIQDLS 198 (332)
T ss_pred Cch-------------------HHHHHHHHHHHHCCEEEEEEEeCC---------CCCCCHHHHHHHHHHHhcCCC
Confidence 942 445678899999999888874221 256899999999999988764
No 263
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=21.08 E-value=1.7e+02 Score=31.20 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=32.5
Q ss_pred cccCCccchHHHHHHCCCeEE--ecCCCCCCc-hHHHHHHHhcCcEEEe
Q 007518 547 FFPFAWKDAVEEACENGIGVI--AEPGGSIRD-GDAIDCCNKYGVALLL 592 (600)
Q Consensus 547 FFPF~~~D~ve~Aa~aGi~aI--IQPGGSiRD-~evI~aa~e~giaMvf 592 (600)
|-+-. |.++.+.+...++| +.|.|..-| +++.+.|+++|+.++-
T Consensus 105 ~~~d~--~~le~~i~~~tk~i~~~~~~G~~~~~~~i~~la~~~~i~vIe 151 (375)
T PRK11706 105 MNIDE--TLIEAAITPKTRAIVPVHYAGVACEMDTIMALAKKHNLFVVE 151 (375)
T ss_pred CCcCH--HHHHHhcCCCCeEEEEeCCCCCccCHHHHHHHHHHcCCEEEE
Confidence 33445 77888776666665 578887767 5888999999998773
No 264
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=21.02 E-value=1e+02 Score=31.58 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCc--cCc----eEEeecccccCCccchHHHHHHC-CCeEEecCCCCCCchHHHHHHHhcCcEEEec
Q 007518 524 ESLRIAMKKAGDE--VKG----AALASDAFFPFAWKDAVEEACEN-GIGVIAEPGGSIRDGDAIDCCNKYGVALLLT 593 (600)
Q Consensus 524 ds~~iA~~kA~~~--~~G----avlASDAFFPF~~~D~ve~Aa~a-Gi~aIIQPGGSiRD~evI~aa~e~giaMvfT 593 (600)
.++++|++..++. ..| .+..-|.-=|-.-...++.+++. ||.+|+-|.+|--...+...|++++|+++..
T Consensus 21 ~g~~~a~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~~~vp~i~~ 97 (333)
T cd06331 21 NAALLAIEEINAAGGILGRPLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSASRKAVLPVVERGRGLLFYP 97 (333)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHHHHHHHHHHHhcCceEEeC
Confidence 6778888775431 222 22333332222222245555666 9999999999977788999999999999873
No 265
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=20.98 E-value=1.3e+02 Score=28.53 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=27.0
Q ss_pred chHHHHHHCCCeEEecCCCCC-------CchHHHHHHHhc-CcEEEecCC
Q 007518 554 DAVEEACENGIGVIAEPGGSI-------RDGDAIDCCNKY-GVALLLTSV 595 (600)
Q Consensus 554 D~ve~Aa~aGi~aIIQPGGSi-------RD~evI~aa~e~-giaMvfTg~ 595 (600)
..++.+.+.||+.++-.+... ..+.+++++.+. ||.++++..
T Consensus 39 ~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (275)
T cd01292 39 RALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGIRVVLGLG 88 (275)
T ss_pred HHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCeeeEEecc
Confidence 456667777888777755332 125667777777 777776543
No 266
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=20.85 E-value=6e+02 Score=26.44 Aligned_cols=133 Identities=18% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCcEEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHHHCCCeeEEecccCCCCCCCCCcccccccccccccccCCCC
Q 007518 74 ANKQALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLENAGVSVTKVEQLTCFPEMLDGRVKTLHPNIHGGILARRDQ 153 (600)
Q Consensus 74 ~i~rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~e~GI~v~~VskiTGfPEildGRVKTLHPkIhGGILarr~~ 153 (600)
.-+.|||+-..+-=-..+|+.|.++|-+++-|+-+.+.|++.=.... -+|++ +++|- ++.++-.+
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~----~~~~~---~~~~~--------~~~~Dv~~ 71 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG----GLGYT---GGKVL--------AIVCDVSK 71 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH----hcCCC---CCeeE--------EEECcCCC
Confidence 34578888887655579999999999999999998887665111000 01221 22221 23333334
Q ss_pred HHhHHHHH----HcCCCceeEEEEeccCcHHhhhcCCCCChhhhhhcccc---chHHHHHHHHH------CCCCEEEEeC
Q 007518 154 KHHMDALS----EHGIGTFDLVVVNLYPFYDKVTSAGGIDFEDGIENIDI---GGPAMIRAAAK------NHKDVLVVVG 220 (600)
Q Consensus 154 ~~h~~~l~----~~~I~~IDlVVVNLYPFe~tv~~~~~~~~ee~IEnIDI---GGpsmiRAAAK------N~~~V~Vv~d 220 (600)
+++.+++. +.--+.||++|.|-..=...-.-. +.+.|+-=..++| |..-+++.+|+ ..-+|.+++.
T Consensus 72 ~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~-~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss 150 (270)
T KOG0725|consen 72 EVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSIL-DLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISS 150 (270)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChh-hCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 44444433 222577999999976543221111 3344433333344 44566666553 3444555544
Q ss_pred CC
Q 007518 221 SE 222 (600)
Q Consensus 221 P~ 222 (600)
..
T Consensus 151 ~~ 152 (270)
T KOG0725|consen 151 VA 152 (270)
T ss_pred cc
Confidence 43
No 267
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=20.67 E-value=2.8e+02 Score=29.69 Aligned_cols=90 Identities=17% Similarity=0.102 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhhhcceEEEEEeCCeEEEec----CCCCcHHHHHHHH-HHHcCCccCceEE--------eecccccC
Q 007518 484 SELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMG----SGQPNRRESLRIA-MKKAGDEVKGAAL--------ASDAFFPF 550 (600)
Q Consensus 484 ~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiG----aGQ~sRVds~~iA-~~kA~~~~~Gavl--------ASDAFFPF 550 (600)
..+.+|+..++..+|++. +||+ +.-++||..-.+. +.+++- .-.++ -.|. |
T Consensus 159 ~~L~~ll~~l~~i~~~~~-----------iri~tr~~~~~p~rit~el~~~L~~~~~--~~~~~~h~dh~~Ei~d~---~ 222 (321)
T TIGR03821 159 HRLDWLLNLLEQIPHLKR-----------LRIHTRLPVVIPDRITSGLCDLLANSRL--QTVLVVHINHANEIDAE---V 222 (321)
T ss_pred hHHHHHHHHHHhCCCCcE-----------EEEecCcceeeHHHhhHHHHHHHHhcCC--cEEEEeeCCChHhCcHH---H
Confidence 347888988888899875 5666 3667899764332 333432 12212 1244 5
Q ss_pred CccchHHHHHHCCCeEEecCCC--CCCc-----hHHHHHHHhcCcEEE
Q 007518 551 AWKDAVEEACENGIGVIAEPGG--SIRD-----GDAIDCCNKYGVALL 591 (600)
Q Consensus 551 ~~~D~ve~Aa~aGi~aIIQPGG--SiRD-----~evI~aa~e~giaMv 591 (600)
. .+|+.+.++|+.-.+|-== .|+| .++++.+.+.|+.-+
T Consensus 223 ~--~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~py 268 (321)
T TIGR03821 223 A--DALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPY 268 (321)
T ss_pred H--HHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeC
Confidence 5 7899999999988777311 1333 356677788898654
No 268
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=20.66 E-value=2.6e+02 Score=27.11 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCccCceEEeecccccCC---ccchHHHHHH-CCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 525 SLRIAMKKAGDEVKGAALASDAFFPFA---WKDAVEEACE-NGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 525 s~~iA~~kA~~~~~GavlASDAFFPF~---~~D~ve~Aa~-aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
.++.|++.++ .|.||.-|+.=.-. |||-+-.+++ .|+..+|--|. +||-+-| .+.|++++-.|.
T Consensus 43 ~~~~ai~~~~---~GdVlVid~~g~~~~a~~G~~~~~~a~~~G~~G~VidG~-vRD~~~i---~~~~~Pvfa~g~ 110 (150)
T TIGR01935 43 LVREVLEQPG---AGRVLVVDGGGSLRCALLGDNLAVLAEENGWEGVIVNGC-VRDVAEL---AGMDLGVKALAA 110 (150)
T ss_pred HHHHHHhcCC---CCeEEEEECCCCCceEeehHHHHHHHHHCCCEEEEEeec-ccCHHHH---hhCCCCEEEeee
Confidence 4566777665 49999988753222 9998877555 59999988765 6997666 567888876553
No 269
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.52 E-value=82 Score=31.55 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCcEEEEechhHHHHHHCCC
Q 007518 88 LASLGIGLQELGYTIVSTGGTATSLENAGV 117 (600)
Q Consensus 88 lv~~Ak~L~~lGfeIiATgGTAk~L~e~GI 117 (600)
...+++.|++.||+.+..-+.+.+|+..|+
T Consensus 139 S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 139 SKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred HHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 478999999999999999999999999997
No 270
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.52 E-value=2.4e+02 Score=30.08 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHHHhhhcceEEEEEeCCeEEEecCCCCcHHHHHHHHHHHcCCccCceEEeecccccCCccchHHHHH
Q 007518 481 PQESELHDAEFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRRESLRIAMKKAGDEVKGAALASDAFFPFAWKDAVEEAC 560 (600)
Q Consensus 481 Pt~~e~~dL~FAwkvvKhvKSNAIV~ak~~~tvGiGaGQ~sRVds~~iA~~kA~~~~~GavlASDAFFPF~~~D~ve~Aa 560 (600)
|.++|---.+-|++.+-.. .|+++.+|||+|.+.-----+|.-.+-..++...|..---|| +=+.+.
T Consensus 21 ~~~~e~~kr~Aa~~avd~~-------~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~------s~q~~~ 87 (261)
T KOG3075|consen 21 LSPQEEAKRLAAYKAVDNY-------VKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFR------SAQLAL 87 (261)
T ss_pred cCchHHHHHHHHhhhhhhh-------ccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchh------hHHHHH
Confidence 4555555567777777653 347999999999876532233433333223444443333333 235666
Q ss_pred HCCCe
Q 007518 561 ENGIG 565 (600)
Q Consensus 561 ~aGi~ 565 (600)
+.|+.
T Consensus 88 ~~gi~ 92 (261)
T KOG3075|consen 88 EYGIP 92 (261)
T ss_pred hcCCc
Confidence 66664
No 271
>PRK06201 hypothetical protein; Validated
Probab=20.44 E-value=2.3e+02 Score=28.90 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=44.7
Q ss_pred HHHHHHHcCCccCceEEeecccccCC---ccchHHHHHH-CCCeEEecCCCCCCchHHHHHHHhcCcEEEecCC
Q 007518 526 LRIAMKKAGDEVKGAALASDAFFPFA---WKDAVEEACE-NGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTSV 595 (600)
Q Consensus 526 ~~iA~~kA~~~~~GavlASDAFFPF~---~~D~ve~Aa~-aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg~ 595 (600)
...|+..++ .|.|+.-|+.=+-. |||-+-.+++ .|+..+|-- |.+||-+-| .+.|++++-.|.
T Consensus 70 ~~~ai~~~~---pG~VlVid~~g~~~~a~~G~~~a~~a~~~G~~G~Vid-G~vRD~~~i---~~~~fPvfa~g~ 136 (221)
T PRK06201 70 IHRALDLAR---PGDVIVVDGGGDLTNALVGEIMLAIAARRGVAGVVID-GAVRDVAAL---REMGFPVFARGV 136 (221)
T ss_pred HHHHHhccC---CCcEEEEECCCCCCccchhHHHHHHHHHCCCeEEEEe-eccCCHHHH---hhCCCCeEEecc
Confidence 345566554 48888888764433 9999888555 599998876 778997665 567888776653
No 272
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=20.43 E-value=3.8e+02 Score=27.25 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHcCcEE--EEechh-------HHHHHHCCCeeEEecccCC
Q 007518 87 DLASLGIGLQELGYTI--VSTGGT-------ATSLENAGVSVTKVEQLTC 127 (600)
Q Consensus 87 glv~~Ak~L~~lGfeI--iATgGT-------Ak~L~e~GI~v~~VskiTG 127 (600)
|...+|..|..+|.+. ++.=|. .+.|++.||++..+....+
T Consensus 49 Ga~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~ 98 (315)
T TIGR02198 49 GAANVARNIASLGARVFLVGVVGDDEAGKRLEALLAEEGIDTSGLIRDKD 98 (315)
T ss_pred HHHHHHHHHHhcCCceEEEEEEecchhHHHHHHHHHHCCCCcceEEECCC
Confidence 4578899999998874 433222 2567889999776655433
No 273
>PRK07832 short chain dehydrogenase; Provisional
Probab=20.40 E-value=2.3e+02 Score=28.18 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=25.3
Q ss_pred EEEEEecCcccHHHHHHHHHHcCcEEEEechhHHHHH
Q 007518 77 QALISLSDKKDLASLGIGLQELGYTIVSTGGTATSLE 113 (600)
Q Consensus 77 rALISVsDK~glv~~Ak~L~~lGfeIiATgGTAk~L~ 113 (600)
++||+.....=-..+++.|.+.|++++.++-....++
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~ 38 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLA 38 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4666665433336788999999999988765444443
No 274
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=20.29 E-value=1.4e+02 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=18.5
Q ss_pred cEEEEEec--CcccHHHHH-HHHHHcCcEEEE
Q 007518 76 KQALISLS--DKKDLASLG-IGLQELGYTIVS 104 (600)
Q Consensus 76 ~rALISVs--DK~glv~~A-k~L~~lGfeIiA 104 (600)
.+++|+|. |+.|++.-. +.|.++|.+|.=
T Consensus 2 ~~avITV~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 2 MRAVITVIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred ceEEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 47899998 999987433 444444444443
No 275
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).
Probab=20.19 E-value=1.9e+02 Score=30.11 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcCCccCceEEeecccccCCccchHHHHHHCCCeEEecCCCCCCchHHHHHHHhcCcEEEecC
Q 007518 523 RESLRIAMKKAGDEVKGAALASDAFFPFAWKDAVEEACENGIGVIAEPGGSIRDGDAIDCCNKYGVALLLTS 594 (600)
Q Consensus 523 Vds~~iA~~kA~~~~~GavlASDAFFPF~~~D~ve~Aa~aGi~aIIQPGGSiRD~evI~aa~e~giaMvfTg 594 (600)
.+++++|++..+.+---.++.-|.. |=......+.+..-+|.+||-|-.|---..+.+.++++||+||..+
T Consensus 20 ~~g~~lA~~~inG~~i~l~~~D~~~-~~~a~~~~~~li~~~V~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~ 90 (336)
T cd06339 20 RNGFLAALYDLNGASIELRVYDTAG-AAGAAAAARQAVAEGADIIVGPLLKENVAALAAAAAELGVPVLALN 90 (336)
T ss_pred HHHHHHHHHhccCCCceEEEEeCCC-cccHHHHHHHHHHcCCCEEEccCCHHHHHHHHhhhccCCCCEEEcc
Confidence 3777888887641112245555556 6554455666666799999988766322234467899999999754
Done!